Wed Jun 12 01:04:30 UTC 2024 I: starting to build python-cobra/unstable/arm64 on jenkins on '2024-06-12 01:04' Wed Jun 12 01:04:30 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_20/23338/console.log Wed Jun 12 01:04:30 UTC 2024 I: Downloading source for unstable/python-cobra=0.29.0-2 --2024-06-12 01:04:30-- http://deb.debian.org/debian/pool/main/p/python-cobra/python-cobra_0.29.0-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 3121 (3.0K) [text/prs.lines.tag] Saving to: ‘python-cobra_0.29.0-2.dsc’ 0K ... 100% 242M=0s 2024-06-12 01:04:30 (242 MB/s) - ‘python-cobra_0.29.0-2.dsc’ saved [3121/3121] Wed Jun 12 01:04:30 UTC 2024 I: python-cobra_0.29.0-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-cobra Binary: python3-cobra, python-cobra-data Architecture: any-amd64 any-i386 arm64 armel armhf mips mips64el mipsel ppc64el alpha hppa m68k powerpc powerpcspe ppc64 sh4 sparc64 all Version: 0.29.0-2 Maintainer: Debian Med Packaging Team Uploaders: Afif Elghraoui Homepage: https://opencobra.github.io/cobrapy/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-cobra Vcs-Git: https://salsa.debian.org/med-team/python-cobra.git Testsuite: autopkgtest Testsuite-Triggers: python3-jsonschema, python3-pytest, python3-pytest-benchmark, python3-pytest-mock, python3-sbml5, python3-scipy, quilt Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-importlib-resources, python3-numpy, python3-optlang (>= 1.7.0-1~), python3-ruamel.yaml, python3-pandas, python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 5.0.8-1~), python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest , python3-pytest-benchmark , python3-pytest-mock , python3-jsonschema , libsbml5-dev , python3-matplotlib , python3-appdirs , python3-diskcache , python3-httpx , python3-pydantic , python3-rich Package-List: python-cobra-data deb python optional arch=all python3-cobra deb python optional arch=any-amd64,arm64,armel,armhf,any-i386,mips,mips64el,mipsel,ppc64el,alpha,hppa,m68k,powerpc,powerpcspe,ppc64,sh4,sparc64,x32 Checksums-Sha1: f28e39c60745c6b7a2c09aa4d9abd39b82bf2b76 3649668 python-cobra_0.29.0.orig.tar.gz a8382a19d158d8f0a674515d3b3feb3ddec7bce6 8884 python-cobra_0.29.0-2.debian.tar.xz Checksums-Sha256: b334b514f0253dfd1f3e1860b687c76005aae55ed98a213166c401b5780fcbc2 3649668 python-cobra_0.29.0.orig.tar.gz df668f6702f022b4e18f19dd75ae71dfcae3085ad92d0622d7b2fb6f8650766a 8884 python-cobra_0.29.0-2.debian.tar.xz Files: d31eb29abffaa85b8db2a936d21bd42f 3649668 python-cobra_0.29.0.orig.tar.gz ad6a395572324288c993f35f6d3e08b3 8884 python-cobra_0.29.0-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmYt5LwRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHjQhAAkbv+0Irxmq7mqQNwipVbt2vGdzljQW2O +XoS+My9ULJo4+ugozxo06kfYyBMEGpnKOyCsNOI6SG4yl6iEH3OYTAze64Tt9O8 zglOe2InBdUUAGAGWmN0PY53XKsA5UruqyLS6jtNhTTe3vw4mXKPbZsYZi8+kD6K OeGQxO0sFaexgGGU53IxVGUjXXdIoOxVPJ24zPsy2Rjvt+JhpAa2jiou9mS4PJdt rfrMrr71dzKsrqriSqUQe+trkgI6ARDk/gVOw3w6D4vhk5UuOg7stqpYM9x69ck6 quvZU6o2ppyUlUlVcTf6OnCoa4Vp4qMI/f8j6xnZ9S9CeYURrNw8hyRG+G3jgfC7 aswPn27NM79eHebRC5DD7/7BjAfW2ak8XdLiweOMMJPJm600voIZsnjWgCqggjkO 04z564XTHBbMzhUUcIdZDTrME90F7+haMJTbKKCJ9K0KbYSDOOIce5UNu27frdj5 lNBk0iRQWIg4zV4L16TDA3rYwLZMWG3K8hTjWagj7PwHPMulwEg9XUGUr5a0qlJ7 lLL9IUwf4+FjEBB9AccxxPGS99niUDZ93wyjH+uon4G+afGLqh91NA6hAa+bJZOA SXF2sVAfRszR0kAv7vLXk4vqmOlHV0+aT/N7DllV8jM4f+ERzQ9kL+KzPTEli15T JkhcCF0jWGo= =J9XS -----END PGP SIGNATURE----- Wed Jun 12 01:04:30 UTC 2024 I: Checking whether the package is not for us Wed Jun 12 01:04:30 UTC 2024 I: Starting 1st build on remote node codethink02-arm64.debian.net. Wed Jun 12 01:04:30 UTC 2024 I: Preparing to do remote build '1' on codethink02-arm64.debian.net. Wed Jun 12 01:09:23 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jun 11 13:04:33 -12 2024 I: pbuilder-time-stamp: 1718154273 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-cobra_0.29.0-2.dsc] I: copying [./python-cobra_0.29.0.orig.tar.gz] I: copying [./python-cobra_0.29.0-2.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Apr 28 05:55:08 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-cobra_0.29.0-2.dsc: no acceptable signature found dpkg-source: info: extracting python-cobra in python-cobra-0.29.0 dpkg-source: info: unpacking python-cobra_0.29.0.orig.tar.gz dpkg-source: info: unpacking python-cobra_0.29.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying mathjax.patch dpkg-source: info: applying xfail_test_show_versions.patch dpkg-source: info: applying ignore_tests.patch dpkg-source: info: applying do-not-seek-for-name.patch dpkg-source: info: applying 32-bit-test.patch dpkg-source: info: applying no_future_dependency.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1462539/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='f2b583f7dcd34f39adb0bbda04b878e8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1462539' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.18Gu2XNa/pbuilderrc_2xvN --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.18Gu2XNa/b1 --logfile b1/build.log python-cobra_0.29.0-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 5 22:35 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1462539/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-importlib-resources, python3-numpy, python3-optlang (>= 1.7.0-1~), python3-ruamel.yaml, python3-pandas, python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 5.0.8-1~), python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-pytest-mock, python3-jsonschema, libsbml5-dev, python3-matplotlib, python3-appdirs, python3-diskcache, python3-httpx, python3-pydantic, python3-rich dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19760 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on libglpk-dev; however: Package libglpk-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-depinfo; however: Package python3-depinfo is not installed. pbuilder-satisfydepends-dummy depends on python3-importlib-resources; however: Package python3-importlib-resources is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-optlang (>= 1.7.0-1~); however: Package python3-optlang is not installed. pbuilder-satisfydepends-dummy depends on python3-ruamel.yaml; however: Package python3-ruamel.yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pip; however: Package python3-pip is not installed. pbuilder-satisfydepends-dummy depends on python3-pipdeptree; however: Package python3-pipdeptree is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-swiglpk (>= 5.0.8-1~); however: Package python3-swiglpk is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate; however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-sbml5; however: Package python3-sbml5 is not installed. pbuilder-satisfydepends-dummy depends on python3-simplejson; however: Package python3-simplejson is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-benchmark; however: Package python3-pytest-benchmark is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however: Package python3-pytest-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-jsonschema; however: Package python3-jsonschema is not installed. pbuilder-satisfydepends-dummy depends on libsbml5-dev; however: Package libsbml5-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-appdirs; however: Package python3-appdirs is not installed. pbuilder-satisfydepends-dummy depends on python3-diskcache; however: Package python3-diskcache is not installed. pbuilder-satisfydepends-dummy depends on python3-httpx; however: Package python3-httpx is not installed. pbuilder-satisfydepends-dummy depends on python3-pydantic; however: Package python3-pydantic is not installed. pbuilder-satisfydepends-dummy depends on python3-rich; however: Package python3-rich is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libamd3{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libbtf2{a} libcamd3{a} libccolamd3{a} libcholmod5{a} libcolamd3{a} libcxsparse4{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libglpk-dev{a} libglpk40{a} libgmp-dev{a} libgmpxx4ldbl{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libklu2{a} liblapack-dev{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldl3{a} liblerc4{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libparu0{a} libpipeline1{a} libpng16-16t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libqhull-r8.0{a} libraqm0{a} librbio4{a} libreadline8t64{a} libsbml5-dev{a} libsbml5t64{a} libsharpyuv0{a} libspex3{a} libspqr4{a} libsuitesparse-dev{a} libsuitesparse-mongoose3{a} libsuitesparseconfig7{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libumfpack6{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-anyio{a} python3-appdirs{a} python3-attr{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-contourpy{a} python3-cpuinfo{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-depinfo{a} python3-dev{a} python3-diskcache{a} python3-distutils{a} python3-fonttools{a} python3-fs{a} python3-h11{a} python3-hatch-vcs{a} python3-hatchling{a} python3-httpcore{a} python3-httpx{a} python3-idna{a} python3-importlib-resources{a} python3-iniconfig{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-markdown-it{a} python3-matplotlib{a} python3-mdurl{a} python3-minimal{a} python3-mpmath{a} python3-numpy{a} python3-optlang{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pathspec{a} python3-pil{a} python3-pil.imagetk{a} python3-pip{a} python3-pipdeptree{a} python3-pkg-resources{a} python3-pluggy{a} python3-pydantic{a} python3-pygments{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-benchmark{a} python3-pytest-mock{a} python3-referencing{a} python3-requests{a} python3-rich{a} python3-rpds-py{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-sbml5{a} python3-scipy{a} python3-setuptools{a} python3-setuptools-scm{a} python3-simplejson{a} python3-six{a} python3-sniffio{a} python3-swiglpk{a} python3-sympy{a} python3-tabulate{a} python3-tk{a} python3-trove-classifiers{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-unicodedata2{a} python3-urllib3{a} python3-wheel{a} python3-zipp{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libgraphblas-dev libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-cssselect python3-elasticsearch python3-freezegun python3-graphviz python3-html5lib python3-jinja2 python3-json-pointer python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pygal python3-rfc3987 python3-tables python3-uritemplate python3-webcolors shared-mime-info wget xdg-user-dirs 0 packages upgraded, 211 newly installed, 0 to remove and 0 not upgraded. Need to get 145 MB of archives. After unpacking 718 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.11-minimal arm64 3.11.9-1 [813 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.11-minimal arm64 3.11.9-1 [1767 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-4 [157 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libpython3.11-stdlib arm64 3.11.9-1 [1775 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 python3.11 arm64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.2.2-1 [1327 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.1-8.1 [95.1 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.12.1-2 [1394 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.21-14 [496 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.14+dfsg-1 [975 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b3 [295 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.43-5 [272 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.2+dfsg-1+b4 [408 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-1.1 [317 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-1.1 [385 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.9-1+b1 [18.1 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libbsd0 arm64 0.12.2-1 [129 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.2-3+b1 [24.3 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2 [143 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.7-1 [328 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1+b1 [27.0 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b1 [51.0 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+23 [252 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b1 [17.0 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libtk8.6 arm64 8.6.14-1 [732 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7 [533 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 blt arm64 2.5.3+dfsg-7 [6024 B] Get: 53 http://deb.debian.org/debian unstable/main arm64 cython3 arm64 3.0.10+dfsg-5 [3120 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 60 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg-3 [609 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.15.3 [901 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 python3-lib2to3 all 3.12.3-3.1 [77.7 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 python3-distutils all 3.12.3-3.1 [131 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 68.1.2-2 [468 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20240422 [107 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 fonts-lyx all 2.4.0-1 [189 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libsuitesparseconfig7 arm64 1:7.7.0+dfsg-2 [22.3 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libamd3 arm64 1:7.7.0+dfsg-2 [36.5 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libblas-dev arm64 3.12.0-3 [98.2 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libbtf2 arm64 1:7.7.0+dfsg-2 [23.0 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libcamd3 arm64 1:7.7.0+dfsg-2 [33.3 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libccolamd3 arm64 1:7.7.0+dfsg-2 [36.1 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libcolamd3 arm64 1:7.7.0+dfsg-2 [29.9 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.1.0-1 [361 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libcholmod5 arm64 1:7.7.0+dfsg-2 [507 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libcxsparse4 arm64 1:7.7.0+dfsg-2 [73.7 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.20-1 [41.5 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libexpat1-dev arm64 2.6.2-1 [278 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.13-3+b1 [71.3 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.80.3-1 [1391 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libltdl7 arm64 2.4.7-7+b1 [393 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libglpk40 arm64 5.0-1+b1 [340 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2+b1 [329 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2+b1 [619 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libklu2 arm64 1:7.7.0+dfsg-2 [76.3 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libldl3 arm64 1:7.7.0+dfsg-2 [22.7 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libsuitesparse-mongoose3 arm64 1:7.7.0+dfsg-2 [42.1 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libumfpack6 arm64 1:7.7.0+dfsg-2 [214 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 librbio4 arm64 1:7.7.0+dfsg-2 [36.5 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libspqr4 arm64 1:7.7.0+dfsg-2 [122 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libspex3 arm64 1:7.7.0+dfsg-2 [51.7 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libparu0 arm64 1:7.7.0+dfsg-2 [56.5 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 liblapack-dev arm64 3.12.0-3 [3584 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libsuitesparse-dev arm64 1:7.7.0+dfsg-2 [1253 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libglpk-dev arm64 5.0-1+b1 [425 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2 [69.2 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 8.3.0-2+b1 [2178 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libimagequant0 arm64 2.18.0-1+b1 [34.6 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b1 [30.4 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 libjs-sphinxdoc all 7.2.6-8 [150 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b1 [25.0 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.14-2+b1 [144 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-4+b1 [142 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.0-2+b3 [177 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libpython3.11t64 arm64 3.11.9-1 [1814 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 libpython3.11-dev arm64 3.11.9-1 [4358 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 libpython3-dev arm64 3.11.8-1 [9564 B] Get: 122 http://deb.debian.org/debian unstable/main arm64 libqhull-r8.0 arm64 2020.2-6+b1 [226 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 libraqm0 arm64 0.10.1-1+b1 [13.7 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 libsbml5t64 arm64 5.20.2+dfsg-7 [1882 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 libsbml5-dev arm64 5.20.2+dfsg-7 [3011 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [111 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.4.0-0.1 [267 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.5.1+git230720-4 [307 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [110 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.4.0-0.1 [122 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 libxslt1.1 arm64 1.1.35-1+b1 [221 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 python-matplotlib-data all 3.6.3-2 [2744 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 python3-idna all 3.6-2.1 [38.6 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 python3-sniffio all 1.3.1-1 [7120 B] Get: 135 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-1 [72.9 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 python3-anyio all 4.4.0-1 [57.3 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 python3-attr all 23.2.0-2 [65.5 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 python3-brotli arm64 1.1.0-2+b3 [316 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 python3-certifi all 2023.11.17-1 [155 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 python3-colorama all 0.4.6-4 [36.2 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 python3-click all 8.1.7-1 [94.0 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:1.26.4+ds-10 [4221 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 python3-contourpy arm64 1.0.7-3 [247 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 python3-cpuinfo all 9.0.0+git20221119-1 [23.2 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 python3-cycler all 0.12.1-1 [9496 B] Get: 149 http://deb.debian.org/debian unstable/main arm64 python3-six all 1.16.0-6 [16.3 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 python3-dateutil all 2.9.0-2 [79.4 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 python3-depinfo arm64 2.2.0-2 [11.5 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 python3.11-dev arm64 3.11.9-1 [501 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 python3-dev arm64 3.11.8-1 [26.1 kB] Get: 155 http://deb.debian.org/debian unstable/main arm64 python3-diskcache all 5.6.3-1 [34.4 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 python3-scipy arm64 1.12.0-2 [18.8 MB] Get: 157 http://deb.debian.org/debian unstable/main arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 159 http://deb.debian.org/debian unstable/main arm64 python3-sympy all 1.12.1-1 [3869 kB] Get: 160 http://deb.debian.org/debian unstable/main arm64 python3-tz all 2024.1-2 [30.9 kB] Get: 161 http://deb.debian.org/debian unstable/main arm64 python3-fs all 2.4.16-4 [95.4 kB] Get: 162 http://deb.debian.org/debian unstable/main arm64 python3-lxml arm64 5.2.1-1 [1767 kB] Get: 163 http://deb.debian.org/debian unstable/main arm64 python3-lz4 arm64 4.0.2+dfsg-1+b3 [26.6 kB] Get: 164 http://deb.debian.org/debian unstable/main arm64 python3-unicodedata2 arm64 15.1.0+ds-1+b1 [300 kB] Get: 165 http://deb.debian.org/debian unstable/main arm64 unicode-data all 15.1.0-1 [8547 kB] Get: 166 http://deb.debian.org/debian unstable/main arm64 python3-fonttools arm64 4.46.0-1 [1510 kB] Get: 167 http://deb.debian.org/debian unstable/main arm64 python3-h11 all 0.14.0-1 [50.1 kB] Get: 168 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.0-1 [45.5 kB] Get: 169 http://deb.debian.org/debian unstable/main arm64 python3-pathspec all 0.12.1-1 [28.1 kB] Get: 170 http://deb.debian.org/debian unstable/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 171 http://deb.debian.org/debian unstable/main arm64 python3-trove-classifiers all 2024.1.31-1 [9968 B] Get: 172 http://deb.debian.org/debian unstable/main arm64 python3-hatchling all 1.24.2-1 [53.2 kB] Get: 173 http://deb.debian.org/debian unstable/main arm64 python3-setuptools-scm all 8.1.0-1 [40.5 kB] Get: 174 http://deb.debian.org/debian unstable/main arm64 python3-hatch-vcs all 0.4.0-1 [8336 B] Get: 175 http://deb.debian.org/debian unstable/main arm64 python3-httpcore all 1.0.4-1 [44.5 kB] Get: 176 http://deb.debian.org/debian unstable/main arm64 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get: 177 http://deb.debian.org/debian unstable/main arm64 python3-mdurl all 0.1.2-1 [9444 B] Get: 178 http://deb.debian.org/debian unstable/main arm64 python3-markdown-it all 3.0.0-2 [62.5 kB] Get: 179 http://deb.debian.org/debian unstable/main arm64 python3-rich all 13.7.1-1 [201 kB] Get: 180 http://deb.debian.org/debian unstable/main arm64 python3-httpx all 0.27.0-1 [76.8 kB] Get: 181 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.19.2-2 [10.2 kB] Get: 182 http://deb.debian.org/debian unstable/main arm64 python3-importlib-resources all 6.0.1-1 [21.7 kB] Get: 183 http://deb.debian.org/debian unstable/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 184 http://deb.debian.org/debian unstable/main arm64 python3-rpds-py arm64 0.12.0-3 [241 kB] Get: 185 http://deb.debian.org/debian unstable/main arm64 python3-referencing all 0.31.0-1 [22.2 kB] Get: 186 http://deb.debian.org/debian unstable/main arm64 python3-jsonschema-specifications all 2023.12.1-1 [8976 B] Get: 187 http://deb.debian.org/debian unstable/main arm64 python3-jsonschema all 4.19.2-3 [71.3 kB] Get: 188 http://deb.debian.org/debian unstable/main arm64 python3-kiwisolver arm64 1.4.5-1 [75.0 kB] Get: 189 http://deb.debian.org/debian unstable/main arm64 python3-pil arm64 10.3.0-2 [552 kB] Get: 190 http://deb.debian.org/debian unstable/main arm64 python3-tk arm64 3.12.3-3.1 [113 kB] Get: 191 http://deb.debian.org/debian unstable/main arm64 python3-pil.imagetk arm64 10.3.0-2 [80.0 kB] Get: 192 http://deb.debian.org/debian unstable/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 193 http://deb.debian.org/debian unstable/main arm64 python3-matplotlib arm64 3.6.3-2 [7978 kB] Get: 194 http://deb.debian.org/debian unstable/main arm64 python3-swiglpk arm64 5.0.10-1 [92.5 kB] Get: 195 http://deb.debian.org/debian unstable/main arm64 python3-optlang all 1.8.1-2 [5375 kB] Get: 196 http://deb.debian.org/debian unstable/main arm64 python3-pandas-lib arm64 2.1.4+dfsg-8 [6609 kB] Get: 197 http://deb.debian.org/debian unstable/main arm64 python3-pandas all 2.1.4+dfsg-8 [3015 kB] Get: 198 http://deb.debian.org/debian unstable/main arm64 python3-wheel all 0.43.0-1 [52.5 kB] Get: 199 http://deb.debian.org/debian unstable/main arm64 python3-pip all 24.0+dfsg-2 [1517 kB] Get: 200 http://deb.debian.org/debian unstable/main arm64 python3-pipdeptree arm64 2.2.0-3 [20.6 kB] Get: 201 http://deb.debian.org/debian unstable/main arm64 python3-pydantic arm64 1.10.14-1 [2709 kB] Get: 202 http://deb.debian.org/debian unstable/main arm64 python3-pytest all 8.2.2-1 [248 kB] Get: 203 http://deb.debian.org/debian unstable/main arm64 python3-pytest-benchmark all 4.0.0-3 [43.4 kB] Get: 204 http://deb.debian.org/debian unstable/main arm64 python3-pytest-mock all 3.12.0-1.1 [17.6 kB] Get: 205 http://deb.debian.org/debian unstable/main arm64 python3-urllib3 all 1.26.18-2 [116 kB] Get: 206 http://deb.debian.org/debian unstable/main arm64 python3-requests all 2.31.0+dfsg-2 [68.7 kB] Get: 207 http://deb.debian.org/debian unstable/main arm64 python3-ruamel.yaml.clib arm64 0.2.8+ds-1 [156 kB] Get: 208 http://deb.debian.org/debian unstable/main arm64 python3-ruamel.yaml all 0.18.6+ds-3 [145 kB] Get: 209 http://deb.debian.org/debian unstable/main arm64 python3-sbml5 arm64 5.20.2+dfsg-7 [3106 kB] Get: 210 http://deb.debian.org/debian unstable/main arm64 python3-simplejson arm64 3.19.2-1+b1 [66.7 kB] Get: 211 http://deb.debian.org/debian unstable/main arm64 python3-tabulate all 0.9.0-1 [45.9 kB] Fetched 145 MB in 4s (33.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19760 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.9-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.2-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_arm64.deb ... Unpacking python3.11 (3.11.9-1) ... 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Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:arm64 (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libqhull-r8.0:arm64 (2020.2-6+b1) ... Setting up libldl3:arm64 (1:7.7.0+dfsg-2) ... Setting up file (1:5.45-3) ... Setting up libjbig0:arm64 (2.1-6.1+b1) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Jun 12 01:05:13 UTC 2024. Universal Time is now: Wed Jun 12 01:05:13 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up libbtf2:arm64 (1:7.7.0+dfsg-2) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:arm64 (2.80.3-1) ... No schema files found: doing nothing. Setting up libblas3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-2+b1) ... Setting up libexpat1-dev:arm64 (2.6.2-1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libfribidi0:arm64 (1.0.13-3+b1) ... Setting up libimagequant0:arm64 (2.18.0-1+b1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.43-5) ... Setting up libtcl8.6:arm64 (8.6.14+dfsg-1) ... Setting up autopoint (0.21-14) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libltdl7:arm64 (2.4.7-7+b1) ... Setting up libgfortran5:arm64 (14.1.0-1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:arm64 (1.4.0-0.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libtiff6:arm64 (4.5.1+git230720-4) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libsuitesparseconfig7:arm64 (1:7.7.0+dfsg-2) ... Setting up libopenjp2-7:arm64 (2.5.0-2+b3) ... Setting up netbase (6.4) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.6.3-2) ... Setting up openssl (3.2.2-1) ... Setting up libwebpmux3:arm64 (1.4.0-0.1) ... Setting up libbsd0:arm64 (0.12.2-1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:arm64 (2.12.7+dfsg-3) ... Setting up libblas-dev:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3+b1) ... Setting up liblapack3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.17.0-2) ... Setting up gettext (0.21-14+b1) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-2+b1) ... Setting up libamd3:arm64 (1:7.7.0+dfsg-2) ... Setting up libtool (2.4.7-7) ... Setting up libcolamd3:arm64 (1:7.7.0+dfsg-2) ... Setting up libsbml5t64:arm64 (5.20.2+dfsg-7) ... Setting up libspex3:arm64 (1:7.7.0+dfsg-2) ... Setting up libsuitesparse-mongoose3:arm64 (1:7.7.0+dfsg-2) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:arm64 (1.4.0-0.1) ... Setting up libcxsparse4:arm64 (1:7.7.0+dfsg-2) ... Setting up libcamd3:arm64 (1:7.7.0+dfsg-2) ... Setting up libsbml5-dev (5.20.2+dfsg-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:arm64 (2.13.2+dfsg-1+b4) ... Setting up libglpk40:arm64 (5.0-1+b1) ... Setting up librbio4:arm64 (1:7.7.0+dfsg-2) ... Setting up liblapack-dev:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libjs-sphinxdoc (7.2.6-8) ... Setting up libccolamd3:arm64 (1:7.7.0+dfsg-2) ... Setting up libreadline8t64:arm64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-4) ... Setting up libxslt1.1:arm64 (1.1.35-1+b1) ... Setting up libx11-6:arm64 (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:arm64 (8.3.0-2+b1) ... Setting up libfontconfig1:arm64 (2.15.0-1.1) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1+b1) ... Setting up libcholmod5:arm64 (1:7.7.0+dfsg-2) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b1) ... Setting up libspqr4:arm64 (1:7.7.0+dfsg-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.9-1) ... Setting up libpython3.11t64:arm64 (3.11.9-1) ... Setting up libxext6:arm64 (2:1.3.4-1+b1) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libklu2:arm64 (1:7.7.0+dfsg-2) ... Setting up libpython3.11-dev:arm64 (3.11.9-1) ... Setting up libraqm0:arm64 (0.10.1-1+b1) ... Setting up libumfpack6:arm64 (1:7.7.0+dfsg-2) ... Setting up libxss1:arm64 (1:1.2.3-1+b1) ... Setting up libpython3-stdlib:arm64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up libxft2:arm64 (2.3.6-1+b1) ... Setting up libpython3-dev:arm64 (3.11.8-1) ... Setting up python3.11-dev (3.11.9-1) ... Setting up libtk8.6:arm64 (8.6.14-1) ... Setting up debhelper (13.15.3) ... Setting up libparu0:arm64 (1:7.7.0+dfsg-2) ... Setting up python3 (3.11.8-1) ... Setting up python3-zipp (3.19.2-2) ... Setting up python3-wheel (0.43.0-1) ... Setting up python3-sbml5 (5.20.2+dfsg-7) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-simplejson (3.19.2-1+b1) ... Setting up python3-pil:arm64 (10.3.0-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2023.11.17-1) ... Setting up python3-brotli (1.1.0-2+b3) ... Setting up python3-mdurl (0.1.2-1) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.5-1) ... Setting up python3-idna (3.6-2.1) ... Setting up cython3 (3.0.10+dfsg-5) ... Setting up python3-h11 (0.14.0-1) ... Setting up python3-typing-extensions (4.12.2-1) ... Setting up python3-pip (24.0+dfsg-2) ... Setting up python3-cpuinfo (9.0.0+git20221119-1) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-markdown-it (3.0.0-2) ... Setting up python3-rpds-py (0.12.0-3) ... Setting up python3-trove-classifiers (2024.1.31-1) ... Setting up python3-lxml:arm64 (5.2.1-1) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-diskcache (5.6.3-1) ... Setting up python3-pathspec (0.12.1-1) ... Setting up python3-lib2to3 (3.12.3-3.1) ... Setting up python3-pipdeptree (2.2.0-3) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-swiglpk (5.0.10-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-3.1) ... Setting up python3-httpcore (1.0.4-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sniffio (1.3.1-1) ... Setting up python3-sympy (1.12.1-1) ... Setting up python3-attr (23.2.0-2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up python3-setuptools (68.1.2-2) ... Setting up libsuitesparse-dev:arm64 (1:7.7.0+dfsg-2) ... Setting up python3-anyio (4.4.0-1) ... Setting up python3-importlib-resources (6.0.1-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-lz4 (4.0.2+dfsg-1+b3) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-pytest (8.2.2-1) ... Setting up python3-unicodedata2 (15.1.0+ds-1+b1) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3-ruamel.yaml.clib:arm64 (0.2.8+ds-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-tk:arm64 (3.12.3-3.1) ... Setting up python3-click (8.1.7-1) ... Setting up python3-setuptools-scm (8.1.0-1) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-pil.imagetk:arm64 (10.3.0-2) ... Setting up libglpk-dev:arm64 (5.0-1+b1) ... Setting up python3-pydantic (1.10.14-1) ... Setting up python3-dev (3.11.8-1) ... Setting up python3-requests (2.31.0+dfsg-2) ... Setting up python3-depinfo (2.2.0-2) ... Setting up python3-numpy (1:1.26.4+ds-10) ... Setting up python3-ruamel.yaml (0.18.6+ds-3) ... Setting up python3-pytest-mock (3.12.0-1.1) ... Setting up python3-contourpy (1.0.7-3) ... Setting up python3-hatchling (1.24.2-1) ... Setting up python3-hatch-vcs (0.4.0-1) ... Setting up python3-referencing (0.31.0-1) ... Setting up python3-optlang (1.8.1-2) ... Setting up python3-pytest-benchmark (4.0.0-3) ... Setting up dh-python (6.20240422) ... Setting up python3-scipy (1.12.0-2) ... Setting up python3-rich (13.7.1-1) ... Setting up python3-pandas-lib:arm64 (2.1.4+dfsg-8) ... Setting up python3-pandas (2.1.4+dfsg-8) ... Setting up python3-httpx (0.27.0-1) ... Setting up python3-jsonschema-specifications (2023.12.1-1) ... Setting up python3-jsonschema (4.19.2-3) ... Setting up python3-fonttools (4.46.0-1) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-2) ... Processing triggers for libc-bin (2.38-13) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-cobra-0.29.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cobra_0.29.0-2_source.changes dpkg-buildpackage: info: source package python-cobra dpkg-buildpackage: info: source version 0.29.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-cobra-0.29.0' dh_auto_clean I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -f cobra/solvers/cglpk.c rm -rf .pytest_cache make[1]: Leaving directory '/build/reproducible-path/python-cobra-0.29.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra copying src/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra copying src/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary copying src/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary copying src/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary copying src/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary copying src/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary copying src/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium copying src/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium copying src/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium copying src/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium copying src/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation copying src/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation copying src/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation copying src/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation copying src/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation copying src/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/gene.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build; python3.11 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-8.2.2, pluggy-1.5.0 benchmark: 4.0.0 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000) rootdir: /build/reproducible-path/python-cobra-0.29.0 configfile: tox.ini plugins: mock-3.12.0, benchmark-4.0.0, anyio-4.4.0 collected 551 items tests/test_core/test_configuration.py ...... [ 1%] tests/test_core/test_core_reaction.py ..........ss...................... [ 7%] ...................x....... [ 12%] tests/test_core/test_dictlist.py ...................... [ 16%] tests/test_core/test_formula.py ..... [ 17%] tests/test_core/test_gene.py . [ 17%] tests/test_core/test_gpr.py .....................x..x................... [ 25%] .......................... [ 29%] tests/test_core/test_group.py .. [ 30%] tests/test_core/test_metabolite.py ...ss.ss. [ 31%] tests/test_core/test_model.py .......................................... [ 39%] ...........s..s.ss. [ 43%] tests/test_core/test_solution.py .ss [ 43%] tests/test_flux_analysis/test_deletion.py ....s..... [ 45%] tests/test_flux_analysis/test_fastcc.py .... [ 46%] tests/test_flux_analysis/test_geometric.py .. [ 46%] tests/test_flux_analysis/test_moma.py . [ 46%] tests/test_flux_analysis/test_parsimonious.py .. [ 47%] tests/test_flux_analysis/test_reaction.py . [ 47%] tests/test_flux_analysis/test_room.py .... [ 47%] tests/test_flux_analysis/test_variability.py ....... [ 49%] tests/test_flux_analysis/test_deletion.py sss [ 49%] tests/test_flux_analysis/test_moma.py s [ 49%] tests/test_flux_analysis/test_deletion.py ...... [ 50%] tests/test_flux_analysis/test_gapfilling.py . [ 51%] tests/test_flux_analysis/test_helpers.py ... [ 51%] tests/test_flux_analysis/test_loopless.py ..... [ 52%] tests/test_flux_analysis/test_phenotype_phase_plane.py ...... [ 53%] tests/test_flux_analysis/test_variability.py ....... [ 54%] tests/test_io/test_annotation.py .. [ 55%] tests/test_io/test_annotation_format.py .. [ 55%] tests/test_io/test_io_order.py ........................... [ 60%] tests/test_io/test_json.py .... [ 61%] tests/test_io/test_mat.py ............... [ 64%] tests/test_io/test_notes.py . [ 64%] tests/test_io/test_pickle.py .. [ 64%] tests/test_io/test_sbml.py .ssss............xxxx.x.x..s............. [ 72%] tests/test_io/test_web/test_load.py ..ssss. [ 73%] tests/test_io/test_yaml.py .x [ 73%] tests/test_manipulation/test_annotate.py . [ 73%] tests/test_manipulation/test_delete.py ....... [ 75%] tests/test_manipulation/test_modify.py ... [ 75%] tests/test_manipulation/test_validate.py .. [ 76%] tests/test_medium/test_boundary_types.py ......... [ 77%] tests/test_medium/test_minimal_medium.py .......... [ 79%] tests/test_sampling/test_achr.py ...... [ 80%] tests/test_sampling/test_optgp.py ...... [ 81%] tests/test_sampling/test_sampling.py .......... [ 83%] tests/test_summary/test_metabolite_summary.py ................. [ 86%] tests/test_summary/test_model_summary.py ............... [ 89%] tests/test_summary/test_reaction_summary.py .................... [ 92%] tests/test_util/test_array.py .. [ 93%] tests/test_util/test_context.py ... [ 93%] tests/test_util/test_process_pool.py ............... [ 96%] tests/test_util/test_solver.py ..............s [ 99%] tests/test_util/test_util.py ...x [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_and_gpr[a AND b-2-gpr_genes2-a and b] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_and_b_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3] /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a AND b'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_or_gpr[a OR b-2-gpr_genes2-a or b] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_as_symbolic_boolean[a OR b-symbolic_gpr2] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_or_b_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_from_symbolic[a OR b-symbolic_gpr5] /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a OR b'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_complicated_gpr[(a OR b) AND c] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_as_symbolic_boolean[(a OR b) AND c-symbolic_gpr6] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_or_and_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists8] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists9] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_from_symbolic[(a OR b) AND c-symbolic_gpr9] /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule '(a OR b) AND c'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_that_needs_two_replacements /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule '(591001.3.peg.1891 AND 591001.3.peg.1892 AND 591001.3.peg.1893)'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_and_b_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3] /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'b AND a'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_or_b_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6] /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'b OR a'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_or_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists7] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists8] /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a OR b or c'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_and_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists7] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists9] /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a AND b and c'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_reaction_delete .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_reaction_delete /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/reaction.py:879: DeprecationWarning: delete is deprecated. Use reaction.remove_from_model instead warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_group_loss_of_elements .pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_gapfilling.py::test_gapfilling /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/group.py:147: UserWarning: need to pass in a list warn("need to pass in a list") .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_change_objective .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_change_objective .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_change_objective /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/reaction.py:761: DeprecationWarning: Please use reaction.flux instead. warn("Please use reaction.flux instead.", DeprecationWarning) .pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion .pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_deletion.py:438: FutureWarning: Calling float on a single element Series is deprecated and will raise a TypeError in the future. Use float(ser.iloc[0]) instead assert math.isnan(sol.growth) .pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion .pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_deletion.py:439: FutureWarning: Calling float on a single element Series is deprecated and will raise a TypeError in the future. Use float(ser.iloc[0]) instead assert math.isnan(sol_one.growth) .pybuild/cpython3_3.11_cobra/build/tests/test_io/test_json.py: 1 warning .pybuild/cpython3_3.11_cobra/build/tests/test_io/test_mat.py: 5 warnings .pybuild/cpython3_3.11_cobra/build/tests/test_io/test_pickle.py: 1 warning .pybuild/cpython3_3.11_cobra/build/tests/test_io/test_sbml.py: 9 warnings .pybuild/cpython3_3.11_cobra/build/tests/test_io/test_yaml.py: 1 warning /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/solver.py:554: UserWarning: Solver status is 'infeasible'. warn(f"Solver status is '{status}'.", UserWarning) .pybuild/cpython3_3.11_cobra/build/tests/test_io/test_yaml.py::test_save_yaml_model /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/tests/test_io/test_yaml.py:29: PendingDeprecationWarning: you should no longer specify 'unsafe'. For **dumping only** use yaml=YAML(typ='full') yaml = YAML(typ="unsafe") .pybuild/cpython3_3.11_cobra/build/tests/test_medium/test_boundary_types.py: 96 warnings /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/boundary_types.py:97: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` return most[0] .pybuild/cpython3_3.11_cobra/build/tests/test_medium/test_boundary_types.py::test_find_external_compartment_multi .pybuild/cpython3_3.11_cobra/build/tests/test_medium/test_boundary_types.py::test_find_external_compartment_multi .pybuild/cpython3_3.11_cobra/build/tests/test_medium/test_boundary_types.py::test_find_external_compartment_multi /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/boundary_types.py:74: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` compartment = most[matches[most]][0] .pybuild/cpython3_3.11_cobra/build/tests/test_util/test_process_pool.py::test_with_context /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/process_pool.py:72: PytestMockWarning: Mocks returned by pytest-mock do not need to be used as context managers. The mocker fixture automatically undoes mocking at the end of a test. This warning can be ignored if it was triggered by mocking a context manager. https://pytest-mock.readthedocs.io/en/latest/remarks.html#usage-as-context-manager self._pool.__enter__() -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ----------------------------------------------------------------------------------------------------------------------- benchmark: 31 tests ------------------------------------------------------------------------------------------------------------------------ Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- test_subtract_metabolite_benchmark[cplex] 4.5197 (1.0) 309.5618 (10.92) 4.8963 (1.04) 6.8966 (12.78) 4.6408 (1.0) 0.0405 (1.0) 9;412 204,236.6580 (0.96) 3416 1 test_subtract_metabolite_benchmark[glpk] 4.5202 (1.00) 317.8022 (11.21) 4.8756 (1.04) 6.8323 (12.66) 4.6799 (1.01) 0.0801 (1.98) 8;61 205,102.2670 (0.97) 3472 1 test_subtract_metabolite_benchmark[gurobi] 4.5598 (1.01) 28.3602 (1.0) 4.7088 (1.0) 0.5398 (1.0) 4.6799 (1.01) 0.0801 (1.98) 14;60 212,369.8038 (1.0) 3324 1 test_achr_sample_benchmark 220.7211 (48.84) 435.8832 (15.37) 233.9277 (49.68) 14.9824 (27.75) 227.8020 (49.09) 10.6804 (263.63) 108;90 4,274.8250 (0.02) 774 1 test_change_objective_benchmark[optlang-glpk] 245.4808 (54.31) 8,518.1328 (300.36) 280.5255 (59.58) 313.3718 (580.51) 255.3621 (55.03) 13.3612 (329.80) 17;254 3,564.7381 (0.02) 2586 1 test_optgp_sample_benchmark 329.4819 (72.90) 520.4431 (18.35) 350.7930 (74.50) 17.3582 (32.16) 342.6028 (73.82) 18.4302 (454.93) 210;62 2,850.6841 (0.01) 1199 1 test_loopless_benchmark_after 1,492.1301 (330.14) 2,176.4538 (76.74) 1,596.5558 (339.06) 75.3065 (139.50) 1,584.7692 (341.49) 75.1200 (>1000.0) 35;6 626.3483 (0.00) 242 1 test_loopless_benchmark_before 7,663.1280 (>1000.0) 16,687.1450 (588.40) 8,769.2845 (>1000.0) 2,446.1443 (>1000.0) 7,868.7896 (>1000.0) 164.5207 (>1000.0) 10;14 114.0344 (0.00) 80 1 test_minimal_medium_mip_benchmark 9,365.6192 (>1000.0) 10,062.8631 (354.82) 9,663.0493 (>1000.0) 138.7253 (256.98) 9,625.9410 (>1000.0) 162.6407 (>1000.0) 20;2 103.4870 (0.00) 67 1 test_minimal_medium_linear_benchmark 9,441.4200 (>1000.0) 10,437.8648 (368.05) 9,953.7400 (>1000.0) 164.8070 (305.30) 9,963.3429 (>1000.0) 214.1907 (>1000.0) 19;2 100.4647 (0.00) 65 1 test_copy_benchmark[optlang-glpk] 19,155.2402 (>1000.0) 373,655.5870 (>1000.0) 28,284.0638 (>1000.0) 52,068.1023 (>1000.0) 19,891.1650 (>1000.0) 2,265.9339 (>1000.0) 1;1 35.3556 (0.00) 46 1 test_single_reaction_deletion_benchmark[glpk] 27,064.6499 (>1000.0) 60,722.1019 (>1000.0) 30,047.6864 (>1000.0) 7,661.7120 (>1000.0) 27,181.7299 (>1000.0) 334.1630 (>1000.0) 4;8 33.2804 (0.00) 36 1 test_deepcopy_benchmark 29,494.5459 (>1000.0) 575,524.2142 (>1000.0) 50,675.8395 (>1000.0) 96,023.7708 (>1000.0) 32,738.6861 (>1000.0) 3,038.9796 (>1000.0) 1;3 19.7333 (0.00) 32 1 test_gpr_equality_benchmark 35,065.0596 (>1000.0) 79,724.7807 (>1000.0) 39,254.4785 (>1000.0) 10,929.1861 (>1000.0) 35,706.8642 (>1000.0) 751.3752 (>1000.0) 2;3 25.4748 (0.00) 25 1 test_fastcc_benchmark[glpk] 73,526.7019 (>1000.0) 90,486.8888 (>1000.0) 78,492.4129 (>1000.0) 4,786.3493 (>1000.0) 78,756.5548 (>1000.0) 6,606.2012 (>1000.0) 2;0 12.7401 (0.00) 14 1 test_add_metabolite_benchmark[gurobi] 83,241.7631 (>1000.0) 169,594.8653 (>1000.0) 102,294.6596 (>1000.0) 33,224.8432 (>1000.0) 84,440.7300 (>1000.0) 31,508.0776 (>1000.0) 1;1 9.7757 (0.00) 7 1 test_add_metabolite_benchmark[glpk] 83,990.8482 (>1000.0) 90,268.3269 (>1000.0) 85,835.3021 (>1000.0) 1,878.8764 (>1000.0) 86,089.7801 (>1000.0) 2,413.9454 (>1000.0) 2;1 11.6502 (0.00) 13 1 test_add_metabolite_benchmark[cplex] 84,287.7300 (>1000.0) 166,212.8838 (>1000.0) 141,478.8116 (>1000.0) 33,018.1778 (>1000.0) 157,932.9921 (>1000.0) 38,213.7699 (>1000.0) 3;0 7.0682 (0.00) 13 1 test_achr_init_benchmark 107,463.9140 (>1000.0) 112,818.9079 (>1000.0) 109,873.0852 (>1000.0) 1,989.3159 (>1000.0) 108,896.0432 (>1000.0) 3,460.7219 (>1000.0) 3;0 9.1014 (0.00) 9 1 test_optgp_init_benchmark 109,819.6087 (>1000.0) 113,789.7940 (>1000.0) 111,674.7008 (>1000.0) 1,832.8987 (>1000.0) 110,426.9726 (>1000.0) 3,549.0119 (>1000.0) 4;0 8.9546 (0.00) 9 1 test_single_gene_deletion_linear_moma_benchmark[glpk] 222,000.0341 (>1000.0) 228,022.9116 (>1000.0) 225,646.5610 (>1000.0) 2,299.2379 (>1000.0) 226,241.7409 (>1000.0) 2,855.6067 (>1000.0) 2;0 4.4317 (0.00) 5 1 test_gpr_symbolism_benchmark 244,449.4949 (>1000.0) 294,055.5671 (>1000.0) 256,912.5735 (>1000.0) 20,892.1588 (>1000.0) 247,992.7982 (>1000.0) 15,256.5462 (>1000.0) 1;1 3.8924 (0.00) 5 1 test_double_gene_deletion_benchmark 277,038.2990 (>1000.0) 295,160.0533 (>1000.0) 285,980.6276 (>1000.0) 7,245.9155 (>1000.0) 286,844.6801 (>1000.0) 11,600.6130 (>1000.0) 2;0 3.4967 (0.00) 5 1 test_pfba_benchmark[glpk] 311,117.0330 (>1000.0) 319,736.1282 (>1000.0) 314,613.9754 (>1000.0) 3,321.0292 (>1000.0) 314,473.8548 (>1000.0) 4,412.1380 (>1000.0) 2;0 3.1785 (0.00) 5 1 test_single_gene_deletion_fba_benchmark[glpk] 319,700.8870 (>1000.0) 394,771.7589 (>1000.0) 343,325.4358 (>1000.0) 30,456.8227 (>1000.0) 335,773.0680 (>1000.0) 35,307.4223 (>1000.0) 1;0 2.9127 (0.00) 5 1 test_single_gene_deletion_linear_room_benchmark[glpk] 348,455.3080 (>1000.0) 659,759.3022 (>1000.0) 420,110.8059 (>1000.0) 134,363.5635 (>1000.0) 368,584.1151 (>1000.0) 93,238.6843 (>1000.0) 1;1 2.3803 (0.00) 5 1 test_copy_benchmark_large_model[optlang-glpk] 381,861.1582 (>1000.0) 893,498.9301 (>1000.0) 598,954.4810 (>1000.0) 264,336.4284 (>1000.0) 454,130.0908 (>1000.0) 498,936.4425 (>1000.0) 2;0 1.6696 (0.00) 5 1 test_flux_variability_loopless_benchmark[glpk] 465,587.0432 (>1000.0) 538,419.8599 (>1000.0) 491,969.7126 (>1000.0) 28,790.5776 (>1000.0) 480,211.5350 (>1000.0) 36,244.1376 (>1000.0) 1;0 2.0326 (0.00) 5 1 test_geometric_fba_benchmark[glpk] 485,842.0896 (>1000.0) 501,549.6691 (>1000.0) 493,616.2191 (>1000.0) 7,264.0448 (>1000.0) 489,834.8758 (>1000.0) 12,597.7893 (>1000.0) 3;0 2.0259 (0.00) 5 1 test_flux_variability_benchmark[glpk] 516,701.0841 (>1000.0) 531,539.1771 (>1000.0) 525,103.7288 (>1000.0) 6,202.8117 (>1000.0) 526,502.6656 (>1000.0) 10,397.7050 (>1000.0) 2;0 1.9044 (0.00) 5 1 test_double_reaction_deletion_benchmark 972,242.4229 (>1000.0) 1,187,952.8980 (>1000.0) 1,119,129.1692 (>1000.0) 86,372.6639 (>1000.0) 1,131,574.7029 (>1000.0) 90,987.1514 (>1000.0) 1;0 0.8936 (0.00) 5 1 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Legend: Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile. OPS: Operations Per Second, computed as 1 / Mean ==== 513 passed, 27 skipped, 11 xfailed, 172 warnings in 160.94s (0:02:40) ===== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11 creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/.benchmarks creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/__pycache__/exceptions.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__ creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/solution.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/reaction.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/group.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/model.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/formula.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/metabolite.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/species.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/gene.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/object.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/dictlist.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/singleton.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/configuration.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/reaction.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/yaml.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/sbml.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/mat.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/json.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/dict.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/cobrapy_repository.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/load.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/biomodels_repository.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/bigg_models_repository.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/abstract_model_repository.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/validate.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/modify.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/delete.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/annotations.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/sampling.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/optgp.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/core.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/achr.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/model_summary.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/reaction_summary.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/metabolite_summary.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/summary.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/process_pool.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/util.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/solver.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/context.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/array.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/configuration.py to configuration.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/dictlist.py to dictlist.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/formula.py to formula.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/gene.py to gene.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/group.py to group.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/metabolite.py to metabolite.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/model.py to model.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/object.py to object.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/reaction.py to reaction.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/singleton.py to singleton.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/solution.py to solution.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/species.py to species.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/room.py to room.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/bigg_models_repository.py to bigg_models_repository.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/biomodels_repository.py to biomodels_repository.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/cobrapy_repository.py to cobrapy_repository.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/load.py to load.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/dict.py to dict.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/json.py to json.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/mat.py to mat.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/yaml.py to yaml.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/sbml.py to sbml.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/delete.py to delete.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/modify.py to modify.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/validate.py to validate.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/annotations.py to annotations.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/achr.py to achr.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/core.py to core.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/optgp.py to optgp.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/sampling.py to sampling.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/model_summary.py to model_summary.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/summary.py to summary.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/array.py to array.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/context.py to context.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/process_pool.py to process_pool.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/solver.py to solver.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/util.py to util.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/exceptions.py to exceptions.cpython-311.pyc running install_egg_info running egg_info creating src/cobra.egg-info writing src/cobra.egg-info/PKG-INFO writing dependency_links to src/cobra.egg-info/dependency_links.txt writing requirements to src/cobra.egg-info/requires.txt writing top-level names to src/cobra.egg-info/top_level.txt writing manifest file 'src/cobra.egg-info/SOURCES.txt' reading manifest file 'src/cobra.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'src/cobra.egg-info/SOURCES.txt' Copying src/cobra.egg-info to /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra-0.29.0.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/python-cobra-0.29.0' dh_install -X update_pickles.py --package=python-cobra-data dh_install --remaining-packages find debian -name __pycache__ | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/python-cobra-0.29.0' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:302: Cannot find package that provides python_libsbml. Please add package that provides it to Build-Depends or add "python_libsbml python3-libsbml" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.29.0-2_arm64.deb'. dpkg-deb: building package 'python-cobra-data' in '../python-cobra-data_0.29.0-2_all.deb'. dpkg-genbuildinfo --build=binary -O../python-cobra_0.29.0-2_arm64.buildinfo dpkg-genchanges --build=binary -O../python-cobra_0.29.0-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1462539 and its subdirectories I: Current time: Tue Jun 11 13:09:21 -12 2024 I: pbuilder-time-stamp: 1718154561 Wed Jun 12 01:09:24 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Wed Jun 12 01:09:24 UTC 2024 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Wed Jun 12 01:16:42 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Wed Jun 12 01:16:43 UTC 2024 I: python-cobra_0.29.0-2_arm64.changes: Format: 1.8 Date: Sun, 28 Apr 2024 07:31:52 +0200 Source: python-cobra Binary: python-cobra-data python3-cobra Architecture: all arm64 Version: 0.29.0-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-based modeling of biological networks with Python 3 Closes: 1069985 Changes: python-cobra (0.29.0-2) unstable; urgency=medium . * Team upload. * Build-Depends: s/libsbml5/libsbml5-dev/ Closes: #1069985 * Standards-Version: 4.7.0 (routine-update) Checksums-Sha1: 2fbff3a4054ebdfbe5a2e74c8c0923042a9963c0 1437816 python-cobra-data_0.29.0-2_all.deb 3247770eaece954cba5138543d5dede087dd106c 10816 python-cobra_0.29.0-2_arm64.buildinfo d85af519251aa52a2a427014312e8514aedc2758 1118916 python3-cobra_0.29.0-2_arm64.deb Checksums-Sha256: 66c38a7cd227fbf6901221760fe4dd73a9db2712dc31bf58facb3e1f31f53a58 1437816 python-cobra-data_0.29.0-2_all.deb 29d670c61eda9d2fd6b5ab7af1c3151551059ec98a3f99d68b1e39bfbe6e6977 10816 python-cobra_0.29.0-2_arm64.buildinfo 4747a9e69daa7e661dc8c0c7e952490a1f3cc3464035a5bef89cdecbe728b6b0 1118916 python3-cobra_0.29.0-2_arm64.deb Files: 390170dd5d73e229e6cd7e883b104efa 1437816 python optional python-cobra-data_0.29.0-2_all.deb 6cdc88310b4dbbfd81b740a60f59ea47 10816 python optional python-cobra_0.29.0-2_arm64.buildinfo 085d2c3b3782acd19af3e22e445cf15c 1118916 python optional python3-cobra_0.29.0-2_arm64.deb Wed Jun 12 01:16:44 UTC 2024 I: diffoscope 271 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_20-23338.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.18Gu2XNa/python-cobra_0.29.0-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.18Gu2XNa/python-cobra_0.29.0-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.18Gu2XNa/python-cobra_0.29.0-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.18Gu2XNa/b1/python-cobra_0.29.0-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.18Gu2XNa/b2/python-cobra_0.29.0-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.439s) 0.439s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.044s) 0.044s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 785ms CPU time consumed: 770ms Wed Jun 12 01:16:45 UTC 2024 I: diffoscope 271 found no differences in the changes files, and a .buildinfo file also exists. Wed Jun 12 01:16:45 UTC 2024 I: python-cobra from unstable built successfully and reproducibly on arm64. Wed Jun 12 01:16:47 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Jun 12 01:16:47 UTC 2024 I: Submitting 12K b1/python-cobra_0.29.0-2_arm64.buildinfo.asc Wed Jun 12 01:16:48 UTC 2024 I: Submitting 12K b2/python-cobra_0.29.0-2_arm64.buildinfo.asc Wed Jun 12 01:16:49 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Jun 12 01:16:49 UTC 2024 I: Done submitting .buildinfo files. Wed Jun 12 01:16:49 UTC 2024 I: Removing signed python-cobra_0.29.0-2_arm64.buildinfo.asc files: removed './b1/python-cobra_0.29.0-2_arm64.buildinfo.asc' removed './b2/python-cobra_0.29.0-2_arm64.buildinfo.asc'