Sat May 18 10:46:34 UTC 2024 I: starting to build minimap/unstable/arm64 on jenkins on '2024-05-18 10:46' Sat May 18 10:46:34 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_22/12057/console.log Sat May 18 10:46:34 UTC 2024 I: Downloading source for unstable/minimap=0.2-8 --2024-05-18 10:46:35-- http://deb.debian.org/debian/pool/main/m/minimap/minimap_0.2-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2082 (2.0K) [text/prs.lines.tag] Saving to: ‘minimap_0.2-8.dsc’ 0K .. 100% 278M=0s 2024-05-18 10:46:35 (278 MB/s) - ‘minimap_0.2-8.dsc’ saved [2082/2082] Sat May 18 10:46:35 UTC 2024 I: minimap_0.2-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: minimap Binary: minimap, libminimap0, libminimap-dev Architecture: any Version: 0.2-8 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss Homepage: https://github.com/lh3/minimap Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/minimap Vcs-Git: https://salsa.debian.org/med-team/minimap.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), d-shlibs, zlib1g-dev Package-List: libminimap-dev deb libdevel optional arch=any libminimap0 deb libs optional arch=any minimap deb science optional arch=any Checksums-Sha1: 1ef8361ca16a92e898d901713b6f95e94c2b0db7 31209 minimap_0.2.orig.tar.gz 451abbf7a4669944e311dd06023fcd1626ed659f 78812 minimap_0.2-8.debian.tar.xz Checksums-Sha256: cfcf77cfe2d8d64b16ea60e0139363190eca4853da9dca9d872c38fe80bf5d68 31209 minimap_0.2.orig.tar.gz 1246ff77cb59091dbb4dd03d798c725c69769af2c6fb1c0877a71be42cf6ce57 78812 minimap_0.2-8.debian.tar.xz Files: 15257d99648f486e86580d8a7accc96b 31209 minimap_0.2.orig.tar.gz 2884b41071614e31427fa27be12d196c 78812 minimap_0.2-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEWzS6WqtVB+kDQm6F6NN64vCfSHIFAmV4dWIACgkQ6NN64vCf SHI29w//aTuDhuwP+mQ5rsA/LMDk4GGCtNKy4YNPxrW6CyOYuaOzthgSMNgO2wzg GK/o5YH2SULgPbAAkj1Dt96fF7j21rGEQCONcWnWoWjQddKCeEPowKO0wgBSv5jJ FgyZdpd/XDe3USO1APfyeLOhQOtUqlZB2ds1giX46dLz2m564hzwtVrHcAJP0J2z SckuuU+xcdi3/HRfggJ10b9ajkPt2JLNb/iO7xnO3lQw4aKJlYz1AifbSWyPsewX bfI20JZqaw6PWRX2h/nv/SuJcAa5rDVRIayXwDgietZ/yq+z5zMQszBSOV1G4vFX Uj7QA+FY/l1Rp6OFYTACnXgeOv2QZddHJzjD2MfUrOeVfwE3sqDVJt3l7gK5i7tL ujowiqpyKlM8xFtrDewWqKNHl1xudsxX0qFwl6M4tqosUSW2ZSio4ByIbgpvZTaf wGI1noDdoLcPLVCf/ghUy85G/Kxfpmi4M562ny4sUdboXGsCHGvOl1HggV0k5FMW wVFbKr7y7V0pkdPgLzzq4sJCmi4XD6la2TJ1C4Y4bApwZzpjfdaYQIqOdZRk0BlH Ej3DG6kXnnDUbQmUMMjn/EruOD/43Xe1R9bS0pJOeSJP/GYx0ItR6Rnc9yvkM2Ou BELWr7zDfXCJzyXQ0MKKcHlAdOaMmr4mpugkGRzZcbBJNIiEpDA= =MO0U -----END PGP SIGNATURE----- Sat May 18 10:46:35 UTC 2024 I: Checking whether the package is not for us Sat May 18 10:46:35 UTC 2024 I: Starting 1st build on remote node codethink04-arm64.debian.net. Sat May 18 10:46:35 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Sat May 18 10:47:23 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri May 17 22:46:38 -12 2024 I: pbuilder-time-stamp: 1716029198 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [minimap_0.2-8.dsc] I: copying [./minimap_0.2.orig.tar.gz] I: copying [./minimap_0.2-8.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Dec 12 14:59:46 2023 gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./minimap_0.2-8.dsc: no acceptable signature found dpkg-source: info: extracting minimap in minimap-0.2 dpkg-source: info: unpacking minimap_0.2.orig.tar.gz dpkg-source: info: unpacking minimap_0.2-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying make_shared_lib dpkg-source: info: applying hardening dpkg-source: info: applying ensure_64bit_value I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/536184/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='074705fecb5a48af993b956796619b03' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='536184' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.KmyYLgOg/pbuilderrc_fStq --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.KmyYLgOg/b1 --logfile b1/build.log minimap_0.2-8.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 17 07:42 /bin -> usr/bin I: user script /srv/workspace/pbuilder/536184/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19764 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdata-optlist-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libparams-util-perl{a} libpipeline1{a} libsub-exporter-perl{a} libsub-install-perl{a} libsub-override-perl{a} libsub-prototype-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 19.7 MB of archives. After unpacking 77.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.1-1 [93.2 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 d-shlibs all 0.106 [10.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libparams-util-perl arm64 1.102-3 [23.4 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libsub-prototype-perl arm64 0.03-2+b2 [9776 B] Get: 26 http://deb.debian.org/debian unstable/main arm64 libsub-override-perl all 0.11-1 [10.4 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 29 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.15.3 [901 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Fetched 19.7 MB in 0s (71.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19764 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-4_arm64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.1-1_arm64.deb ... Unpacking bsdextrautils (2.40.1-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-1_arm64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../15-d-shlibs_0.106_all.deb ... Unpacking d-shlibs (0.106) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../20-libparams-util-perl_1.102-3_arm64.deb ... Unpacking libparams-util-perl (1.102-3) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../21-libsub-install-perl_0.929-1_all.deb ... Unpacking libsub-install-perl (0.929-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../22-libdata-optlist-perl_0.114-1_all.deb ... Unpacking libdata-optlist-perl (0.114-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../23-libsub-exporter-perl_0.990-1_all.deb ... Unpacking libsub-exporter-perl (0.990-1) ... Selecting previously unselected package libsub-prototype-perl. Preparing to unpack .../24-libsub-prototype-perl_0.03-2+b2_arm64.deb ... Unpacking libsub-prototype-perl (0.03-2+b2) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../25-libsub-override-perl_0.11-1_all.deb ... Unpacking libsub-override-perl (0.11-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../26-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../27-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../28-libelf1t64_0.191-1+b1_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../29-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../30-libicu72_72.1-4+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-4+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../31-libxml2_2.9.14+dfsg-1.3+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../32-gettext_0.21-14+b1_arm64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../33-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../34-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../35-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../36-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1) ... Setting up libpipeline1:arm64 (1.5.7-2) ... Setting up libicu72:arm64 (72.1-4+b1) ... Setting up bsdextrautils (2.40.1-1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libsub-install-perl (0.929-1) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up d-shlibs (0.106) ... Setting up libparams-util-perl (1.102-3) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up groff-base (1.23.0-4) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libsub-prototype-perl (0.03-2+b2) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libsub-override-perl (0.11-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.38-11) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/minimap-0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../minimap_0.2-8_source.changes dpkg-buildpackage: info: source package minimap dpkg-buildpackage: info: source version 0.2-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/minimap-0.2' dh_auto_clean make -j12 clean make[2]: Entering directory '/build/reproducible-path/minimap-0.2' rm -fr gmon.out *.o a.out minimap sdust minimap-lite *~ *.a *.dSYM session* make[2]: Leaving directory '/build/reproducible-path/minimap-0.2' test ! -e debian/bseq.h || mv debian/*.h /build/reproducible-path/minimap-0.2 make[1]: Leaving directory '/build/reproducible-path/minimap-0.2' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/minimap-0.2' cp /build/reproducible-path/minimap-0.2/*.h debian/ dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/minimap-0.2' gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. main.c -o main.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. kthread.c -o kthread.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. misc.c -o misc.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. bseq.c -o bseq.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. sketch.c -o sketch.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. sdust.c -o sdust.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. index.c -o index.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. map.c -o map.o index.c: In function 'mm_idx_load': index.c:317:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 317 | fread(&mi->freq_thres, sizeof(float), 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ index.c:319:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 319 | fread(mi->len, 4, mi->n, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ index.c:324:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 324 | fread(&l, 1, 1, fp); | ^~~~~~~~~~~~~~~~~~~ index.c:326:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 326 | fread(mi->name[i], 1, l, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ index.c:335:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 335 | fread(&b->n, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~ index.c:337:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 337 | fread(b->p, 8, b->n, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ index.c:338:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fread(&size, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~ index.c:345:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 345 | fread(x, 8, 2, fp); | ^~~~~~~~~~~~~~~~~~ ar -csru libminimap.a kthread.o misc.o bseq.o sketch.o sdust.o index.o map.o ar: gcc -shared -o libminimap.so.0 kthread.o misc.o bseq.o sketch.o sdust.o index.o map.o -fPIC -Wl,-soname,libminimap.so.0 -lm -lz -lpthread -Wl,-z,relro -Wl,-z,now `u' modifier ignored since `D' is the default (see `U') gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wl,-z,relro -Wl,-z,now main.o -o minimap -L. -lminimap -lm -lz -lpthread make[2]: Leaving directory '/build/reproducible-path/minimap-0.2' make[1]: Leaving directory '/build/reproducible-path/minimap-0.2' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/minimap-0.2' ln -s libminimap.so.* libminimap.so d-shlibmove --commit \ --multiarch \ --devunversioned \ --movedev "*.h" /usr/include/minimap \ libminimap.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libminimap-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libminimap0/usr/lib/aarch64-linux-gnu mv ./libminimap.a debian/libminimap-dev/usr/lib/aarch64-linux-gnu mv ./libminimap.la debian/libminimap-dev/usr/lib/aarch64-linux-gnu || true mv ./libminimap.so debian/libminimap-dev/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/minimap-0.2/libminimap.so.0 debian/libminimap0/usr/lib/aarch64-linux-gnu PKGDEV=libminimap-dev PKGSHL=libminimap0 install -d -m 755 debian/libminimap-dev//usr/include/minimap mv *.h debian/libminimap-dev//usr/include/minimap mv: cannot stat './libminimap.la': No such file or directory test ! -e debian/bseq.h || mv debian/*.h /build/reproducible-path/minimap-0.2 make[1]: Leaving directory '/build/reproducible-path/minimap-0.2' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libminimap-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libminimap-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'minimap' in '../minimap_0.2-8_arm64.deb'. dpkg-deb: building package 'libminimap0' in '../libminimap0_0.2-8_arm64.deb'. dpkg-deb: building package 'minimap-dbgsym' in '../minimap-dbgsym_0.2-8_arm64.deb'. dpkg-deb: building package 'libminimap0-dbgsym' in '../libminimap0-dbgsym_0.2-8_arm64.deb'. dpkg-deb: building package 'libminimap-dev' in '../libminimap-dev_0.2-8_arm64.deb'. dpkg-genbuildinfo --build=binary -O../minimap_0.2-8_arm64.buildinfo dpkg-genchanges --build=binary -O../minimap_0.2-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/536184 and its subdirectories I: Current time: Fri May 17 22:47:21 -12 2024 I: pbuilder-time-stamp: 1716029241 Sat May 18 10:47:24 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink02-arm64.debian.net. Sat May 18 10:47:24 UTC 2024 I: Preparing to do remote build '2' on codethink02-arm64.debian.net. Sat May 18 10:47:55 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. Sat May 18 10:47:56 UTC 2024 I: minimap_0.2-8_arm64.changes: Format: 1.8 Date: Tue, 12 Dec 2023 15:57:39 +0100 Source: minimap Binary: libminimap-dev libminimap0 libminimap0-dbgsym minimap minimap-dbgsym Architecture: arm64 Version: 0.2-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Sascha Steinbiss Description: libminimap-dev - development headers for libminimap libminimap0 - library for approximate mapping of long biosequences minimap - tool for approximate mapping of long biosequences such as DNA rea Closes: 1049859 Changes: minimap (0.2-8) unstable; urgency=medium . * Enable building twice in a row. Closes: #1049859 * Bump Standards-Version. * Bump d/copyright date. Checksums-Sha1: e0c32c7582a67da7b5d035378e4164fce3001505 32044 libminimap-dev_0.2-8_arm64.deb 993aded8a54ea14f93f34904a610d4d9d107aa66 48420 libminimap0-dbgsym_0.2-8_arm64.deb 3449f57cee5c9ffcc8fa6a3a9e1d8eb259a79a93 20604 libminimap0_0.2-8_arm64.deb fd9a44d31a8bf38bcad95892f4d2380f44e0e5fc 53944 minimap-dbgsym_0.2-8_arm64.deb ba3b08bd7f73a050bdd6c3ba06089661fcc87d29 6502 minimap_0.2-8_arm64.buildinfo ee70eeb6efc2607c46362631da3ed2c2e8c3f027 24608 minimap_0.2-8_arm64.deb Checksums-Sha256: 30b7456e55dcc692be0be173d2c1fa39f9fbef064d6f51cb2f58bc66b7d1725e 32044 libminimap-dev_0.2-8_arm64.deb adb020753e37e2a2f81062500f4d42787ea8224e2e3d543d156e4178e97ac8bb 48420 libminimap0-dbgsym_0.2-8_arm64.deb 9ceb9c06404f37e114c34c38e08c4fa33462f856c327a2ae43b2b114ee4a1797 20604 libminimap0_0.2-8_arm64.deb 043e4246ca568c9d5b200cd4c6a5de679397251b5c521ff6151246227430d353 53944 minimap-dbgsym_0.2-8_arm64.deb 5887abb7e3e05ae19153de6fd60753978d29ffd4bf73ecf53de8e95be5989451 6502 minimap_0.2-8_arm64.buildinfo 0d2fff89fd27d5dd928ac12eb5c12ad70866d49f60a769949e4e65d6d9204d2e 24608 minimap_0.2-8_arm64.deb Files: 73e6cc851c00dd44b16e3a67b0b3d75f 32044 libdevel optional libminimap-dev_0.2-8_arm64.deb 0fe2f857fd8174e511c8362e298ef991 48420 debug optional libminimap0-dbgsym_0.2-8_arm64.deb f4ca63d8878cc386b7ca91d852a9d792 20604 libs optional libminimap0_0.2-8_arm64.deb b80e9c59ff920138f6532965f1919070 53944 debug optional minimap-dbgsym_0.2-8_arm64.deb ec0f2bb9755e4f3331c77b58cd99f1b6 6502 science optional minimap_0.2-8_arm64.buildinfo 8498981b35ab00629bc5d49ac157b83a 24608 science optional minimap_0.2-8_arm64.deb Sat May 18 10:47:57 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_22-12057.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.KmyYLgOg/minimap_0.2-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.KmyYLgOg/minimap_0.2-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.KmyYLgOg/minimap_0.2-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.KmyYLgOg/b1/minimap_0.2-8_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.KmyYLgOg/b2/minimap_0.2-8_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.397s) 0.397s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.021s) 0.021s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 732ms CPU time consumed: 732ms Sat May 18 10:47:59 UTC 2024 I: diffoscope 266 found no differences in the changes files, and a .buildinfo file also exists. Sat May 18 10:47:59 UTC 2024 I: minimap from unstable built successfully and reproducibly on arm64. Sat May 18 10:48:00 UTC 2024 I: Submitting .buildinfo files to external archives: Sat May 18 10:48:00 UTC 2024 I: Submitting 8.0K b1/minimap_0.2-8_arm64.buildinfo.asc Sat May 18 10:48:01 UTC 2024 I: Submitting 8.0K b2/minimap_0.2-8_arm64.buildinfo.asc Sat May 18 10:48:02 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat May 18 10:48:02 UTC 2024 I: Done submitting .buildinfo files. Sat May 18 10:48:02 UTC 2024 I: Removing signed minimap_0.2-8_arm64.buildinfo.asc files: removed './b1/minimap_0.2-8_arm64.buildinfo.asc' removed './b2/minimap_0.2-8_arm64.buildinfo.asc'