Mon Nov 18 00:03:55 UTC 2024 I: starting to build loki/unstable/arm64 on jenkins on '2024-11-18 00:03' Mon Nov 18 00:03:55 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_22/39505/console.log Mon Nov 18 00:03:55 UTC 2024 I: Downloading source for unstable/loki=2.4.7.4-11 --2024-11-18 00:03:55-- http://deb.debian.org/debian/pool/main/l/loki/loki_2.4.7.4-11.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1941 (1.9K) [text/prs.lines.tag] Saving to: ‘loki_2.4.7.4-11.dsc’ 0K . 100% 252M=0s 2024-11-18 00:03:55 (252 MB/s) - ‘loki_2.4.7.4-11.dsc’ saved [1941/1941] Mon Nov 18 00:03:55 UTC 2024 I: loki_2.4.7.4-11.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: loki Binary: loki, loki-doc Architecture: any all Version: 2.4.7.4-11 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/loki Vcs-Git: https://salsa.debian.org/med-team/loki.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: loki deb science optional arch=any loki-doc deb doc optional arch=all Checksums-Sha1: ce7d6ff3ca6159c329ca0f5f6ed633bf265acd33 904260 loki_2.4.7.4.orig.tar.gz c634f2a8c1ecb645fdab3be589ac442ee45cf18d 29204 loki_2.4.7.4-11.debian.tar.xz Checksums-Sha256: 78bc51f47fb756fcdc9ab55bc4c7dd649ee87aaa6bd9be87eac44e4a8eac9eb5 904260 loki_2.4.7.4.orig.tar.gz f2bc3dd3e956e7fc70eaff5797634bd38043896355bbc1a704ff475c1ddf9702 29204 loki_2.4.7.4-11.debian.tar.xz Files: 7764c55d3c3a33584a6f92740210b677 904260 loki_2.4.7.4.orig.tar.gz 5126c3ad1eda659fdcc7a4c3afe8dace 29204 loki_2.4.7.4-11.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmc6PiIRHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBptdhAAkmIhSLgEUj/Nd2DZ7pxgJugQuo9cpTqc tLjLIyVUe5Ilhtr6U8KGKpG0AYz9OHTe9KCKuTpBUHE6pgc1vEObuXWQrlcakA0+ +KKzOH1jnKBgASryS11Ep/jED8/N6tTHYATMkPui/jZG4scaXSGXIBDf+d7u+IEV +N56Seu4I+mV7+p1cMtgM/y8gKHrYaEQ5IO4EPGXWc7T+DiUdfGC9XzJ5Bff11Cs o5vMqetX/BiHNnvbXGxg2DmZs3i550WlCrtZVkL7SEBI4P31/KnSHwVva1Eu9RSk 2NBxv7cZClsWk22+IX300ylOJqhug1yU/HHgGLb+PJQ+sGHbQEzl1r46Y6PudeA8 AiwDNSWywvPTjW2uZy6TAsLF2pGUo2T292m/rGS/vz9ARvBGLy9RXPqx89fllmxh a6CS9gy5Nsyz0JrfM0tWS6yAMm4Bj07Y6U+2uSf6bitAaK1SYCB83PI1V6tT4fKF bFdUeMCnizRjPQHhhvosVsJb4/ovjJ4KSUdE25dERb4SvQmM6wUHw4gr+OYrblQ3 8JullFh7IOY1KUKu90Hkh/lFajJQt0PvMsqNocvemkV4WEWNCNfam4gGzPOShror KRabHQpLtcSwFvOCQ3w7GOFaFUZ5c+kdH3QKcqMVIB4UvITvR/Up/rokM2/84sEH s6D1jWSxYkI= =nYee -----END PGP SIGNATURE----- Mon Nov 18 00:03:55 UTC 2024 I: Checking whether the package is not for us Mon Nov 18 00:03:55 UTC 2024 I: Starting 1st build on remote node codethink04-arm64.debian.net. Mon Nov 18 00:03:55 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Mon Nov 18 00:04:59 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 17 12:03:58 -12 2024 I: pbuilder-time-stamp: 1731888238 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [loki_2.4.7.4-11.dsc] I: copying [./loki_2.4.7.4.orig.tar.gz] I: copying [./loki_2.4.7.4-11.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Nov 17 19:04:02 2024 gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A gpgv: issuer "tchet@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./loki_2.4.7.4-11.dsc: no acceptable signature found dpkg-source: info: extracting loki in loki-2.4.7.4 dpkg-source: info: unpacking loki_2.4.7.4.orig.tar.gz dpkg-source: info: unpacking loki_2.4.7.4-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_utils.patch dpkg-source: info: applying 10_lex.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3282740/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='6e4a922d48dc4023a02c38e3f78d571d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3282740' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fgLXSaGl/pbuilderrc_F5Uo --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fgLXSaGl/b1 --logfile b1/build.log loki_2.4.7.4-11.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3282740/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.4 MB of archives. After unpacking 77.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Fetched 19.4 MB in 0s (210 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../23-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/loki-2.4.7.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../loki_2.4.7.4-11_source.changes dpkg-buildpackage: info: source package loki dpkg-buildpackage: info: source version 2.4.7.4-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf autoreconf: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:4: warning: The macro 'AC_CONFIG_HEADER' is obsolete. configure.in:4: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.in:4: the top level configure.in:40: warning: AC_PROG_LEX without either yywrap or noyywrap is obsolete ./lib/autoconf/programs.m4:743: _AC_PROG_LEX is expanded from... ./lib/autoconf/programs.m4:736: AC_PROG_LEX is expanded from... configure.in:40: the top level configure.in:57: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.in:57: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.in:57: the top level configure.in:111: warning: AC_OUTPUT should be used without arguments. configure.in:111: You should run autoupdate. autoheader: warning: autoconf input should be named 'configure.ac', not 'configure.in' debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4' dh_auto_configure -- --exec_prefix=/build/reproducible-path/loki-2.4.7.4/debian/loki/usr ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --exec_prefix=/build/reproducible-path/loki-2.4.7.4/debian/loki/usr checking whether make sets $(MAKE)... yes checking for DMALLOC library Looking for dmalloc.h in ${prefix}/include and libdmalloc.a in ${prefix}/lib/aarch64-linux-gnu Looking for dmalloc.h in /usr/local/include and libdmalloc.a in /usr/local/lib Looking for dmalloc.h in /usr/include and libdmalloc.a in /usr/lib Looking for dmalloc.h in /build/reproducible-path/loki-2.4.7.4/debian/.debhelper/generated/_source/home/include and libdmalloc.a in /build/reproducible-path/loki-2.4.7.4/debian/.debhelper/generated/_source/home/lib checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for flex... no checking for lex... no checking for bison... no checking for byacc... no checking for ranlib... /usr/bin/ranlib checking for ar... /usr/bin/ar checking for sed... /usr/bin/sed checking for cp... /usr/bin/cp checking for grep... /usr/bin/grep checking for mv... /usr/bin/mv checking for gzip... /usr/bin/gzip checking for chmod... /usr/bin/chmod checking for perl... /usr/bin/perl checking for makedepend... : checking for sin in -lm... yes checking for accept in -lsocket... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for sys/wait.h that is POSIX.1 compatible... yes checking for fcntl.h... yes checking for limits.h... yes checking for values.h... yes checking for unistd.h... (cached) yes checking for sys/systeminfo.h... no checking for mode_t... yes checking for off_t... yes checking for pid_t... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for socklen_t... no checking for an ANSI C-conforming const... yes checking for vprintf... yes checking for memcpy... yes checking for regcomp... yes checking for strtod... yes checking for strtol... yes checking for gethostname... yes checking for popen... yes checking for snprintf... yes checking for atexit... yes checking for memmove... yes configure: creating ./config.status config.status: creating Makefile config.status: creating libsrc/Makefile config.status: creating prepsrc/Makefile config.status: creating prepsrc/compat/Makefile config.status: creating lokisrc/Makefile config.status: creating test/Makefile config.status: creating utils/Makefile config.status: creating include/config.h make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4' debian/rules override_dh_auto_configure-indep make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4' # do nothing here make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4' # nothing to do here make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4' dh_auto_build -Nloki-doc make -j12 make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4' for subdir in libsrc prepsrc lokisrc utils; do \ (cd $subdir; make depend) \ done make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/libsrc' : -I../include/ io_stuff.c ranlib.c genrand.c ran_xtra.c mkbackup.c strsep.c utils.c remember.c peel_utils.c qsort.c min_deg.c bin_tree.c getopt_long.c touch depend make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/libsrc' make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc' : -I../include control_parse.c control_lex.c check_het.c test_het.c prep.c calc_nrm.c write_report.c prep_utils.c gen_elim.c prep_do_peel_op.c write_data.c touch depend make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc' make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/lokisrc' : -I../include loki.c loki_peel.c loki_init.c alloc_loki.c loki_sample.c loki_pen.c loki_tlmoves.c meiosis_scan.c loki_identity.c sample_rand.c sample_effects.c loki_setup.c loki_dump.c sample_cens.c handle_res.c print_data.c calc_var_locus.c loki_output.c sample_nu.c loki_complex_peel.c loki_npl.c loki_simple_sample.c loki_simple_peel.c loki_trait_simple_peel.c loki_trait_simple_sample.c get_par_probs.c read_solar_idfile.c peel_to_par.c update_segs.c param_parse.c param_lex.c read_binfiles.c loki_utils.c kinship.c genedrop.c mat_utils.c output_recomb.c seg_pen.c gen_pen.c loki_ibd.c get_founders.c pass_founder_genes.c touch depend make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/lokisrc' make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/utils' : -I../include qavg.c hist.c touch depend make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/utils' touch depend for subdir in libsrc prepsrc lokisrc utils; do \ (cd $subdir; make) \ done make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/libsrc' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o io_stuff.o io_stuff.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ranlib.o ranlib.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o genrand.o genrand.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ran_xtra.o ran_xtra.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mkbackup.o mkbackup.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o strsep.o strsep.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o remember.o remember.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o peel_utils.o peel_utils.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qsort.o qsort.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o min_deg.o min_deg.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bin_tree.o bin_tree.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o getopt_long.o getopt_long.c /usr/bin/ar cr libgen.a io_stuff.o ranlib.o genrand.o ran_xtra.o mkbackup.o strsep.o utils.o remember.o peel_utils.o qsort.o min_deg.o bin_tree.o getopt_long.o /usr/bin/ranlib libgen.a make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/libsrc' make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o control_parse.o control_parse.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o control_lex.o control_lex.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o read_data.o read_data.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o setup_ped.o setup_ped.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o recode_fact.o recode_fact.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cleanup.o cleanup.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restrict_data.o restrict_data.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o match_records.o match_records.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o init_fam.o init_fam.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o output_data.o output_data.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o get_marker_name.o get_marker_name.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o prep.o prep.c setup_ped.c: In function 'setup_pedigree': setup_ped.c:426:83: warning: this statement may fall through [-Wimplicit-fallthrough=] 426 | if(i!=id) { | ^ setup_ped.c:430:74: note: here 430 | default: | ^~~~~~~ lex.yy.c:2062:12: warning: 'input' defined but not used [-Wunused-function] setup_ped.c: In function 'check_ymark': setup_ped.c:1135:42: warning: pointer 'list' may be used after 'free' [-Wuse-after-free] 1135 | if(pl->type==LINK_Y) list[ny++]=locus; | ^ setup_ped.c:1127:9: note: call to 'free' here 1127 | free(list); | ^~~~~~~~~~ setup_ped.c:1141:17: warning: pointer 'list' may be used after 'free' [-Wuse-after-free] 1141 | do_yprint(i,list,ny); | ^~~~~~~~~~~~~~~~~~~~ setup_ped.c:1127:9: note: call to 'free' here 1127 | free(list); | ^~~~~~~~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o calc_nrm.o calc_nrm.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o write_report.o write_report.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o prep_utils.o prep_utils.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gen_elim.o gen_elim.c write_report.c: In function 'WriteReport': write_report.c:286:28: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses] 286 | if(!elem->type&(ST_MODEL|ST_TRAIT)) continue; | ^~~~~~~~~~~ write_report.c:300:28: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses] 300 | if(!elem->type&(ST_MODEL|ST_TRAIT)) continue; | ^~~~~~~~~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o prep_do_peel_op.o prep_do_peel_op.c gen_elim.c: In function 'min_degree': gen_elim.c:1075:31: warning: variable 'best_fg' set but not used [-Wunused-but-set-variable] 1075 | int x,i1,k1,k2,*trans,best_fg=0; | ^~~~~~~ gen_elim.c: In function 'find_sequence': gen_elim.c:1156:24: warning: variable 'mark' set but not used [-Wunused-but-set-variable] 1156 | struct Marker *mark; | ^~~~ gen_elim.c:1155:31: warning: variable 'order1' set but not used [-Wunused-but-set-variable] 1155 | int *g_perm,*order=0,*order1; | ^~~~~~ prep_do_peel_op.c: In function 'do_peel_op': gen_elim.c: In function 'logical_peel': gen_elim.c:1268:24: warning: variable 'mark' set but not used [-Wunused-but-set-variable] 1268 | struct Marker *mark; | ^~~~ gen_elim.c:1266:34: warning: variable 'pp1' set but not used [-Wunused-but-set-variable] 1266 | struct Peelseq_Head *pp,*pp1; | ^~~ prep_do_peel_op.c:238:26: warning: variable 'fill' set but not used [-Wunused-but-set-variable] 238 | double max_terms,fill; | ^~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o write_data.o write_data.c control_lex.l: In function 'yy_orig_lex': control_lex.l:106:11: warning: '__builtin_strncpy' specified bound 4096 equals destination size [-Wstringop-truncation] 106 | (void)strncpy(linebuf,yytext+1,LINEBUFSIZE); | ^ control_lex.l:95:11: warning: '__builtin_strncpy' specified bound 4096 equals destination size [-Wstringop-truncation] 95 | (void)strncpy(linebuf,yytext,LINEBUFSIZE); | ^ /usr/bin/ar cr libprep.a control_parse.o control_lex.o read_data.o setup_ped.o recode_fact.o cleanup.o restrict_data.o match_records.o init_fam.o output_data.o get_marker_name.o /usr/bin/ranlib libprep.a (cd compat; make) make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc/compat' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../../include -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o compat.o compat.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../../include -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o merlin.o merlin.c merlin.c: In function 'process_qtdt': merlin.c:59:60: warning: parameter 'error_check' set but not used [-Wunused-but-set-parameter] 59 | int process_qtdt(int argc,char *argv[],char **LogFile,int *error_check,loki_time *lt) | ~~~~~^~~~~~~~~~~ merlin.c:162:38: warning: this statement may fall through [-Wimplicit-fallthrough=] 162 | nmark++; | ~~~~~^~ merlin.c:163:26: note: here 163 | case 'A': | ^~~~ /usr/bin/ar cr libcompat.a compat.o merlin.o /usr/bin/ranlib libcompat.a make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc/compat' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o prep prep.o calc_nrm.o write_report.o prep_utils.o gen_elim.o prep_do_peel_op.o write_data.o -Wl,-z,relro -Wl,-z,now -L. -L../libsrc -lprep -lgen -Lcompat -lcompat -lm /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/./prepsrc/compat/merlin.c:41: multiple definition of `strip_vars'; prep.o:./prepsrc/./prepsrc/prep.c:43: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here collect2: error: ld returned 1 exit status make[2]: *** [Makefile:51: prep] Error 1 make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc' make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/lokisrc' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o param_parse.o param_parse.c gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -DYY_NO_UNPUT param_lex.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o read_binfiles.o read_binfiles.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_utils.o loki_utils.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kinship.o kinship.c param_lex.c: In function 'yy_get_next_buffer': param_lex.c:641:32: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 641 | for ( n = 0; n < max_size && \ | ^ param_lex.c:1161:17: note: in expansion of macro 'YY_INPUT' 1161 | YY_INPUT( (&YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[number_to_move]), | ^~~~~~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o genedrop.o genedrop.c param_lex.c: At top level: param_lex.c:1301:16: warning: 'input' defined but not used [-Wunused-function] 1301 | static int input (void) | ^~~~~ param_lex.c:1260:17: warning: 'yyunput' defined but not used [-Wunused-function] 1260 | static void yyunput (int c, register char * yy_bp ) | ^~~~~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mat_utils.o mat_utils.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o output_recomb.o output_recomb.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seg_pen.o seg_pen.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gen_pen.o gen_pen.c gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -DIBD_COMPRESS_PROG=\"/usr/bin/gzip\" loki_ibd.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o get_founders.o get_founders.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pass_founder_genes.o pass_founder_genes.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki.o loki.c gen_pen.c: In function 'calc_degree': gen_pen.c:321:31: warning: variable 'k2' set but not used [-Wunused-but-set-variable] 321 | int i1,j,j1,j2,k=0,k1,k2; | ^~ loki_ibd.c: In function 'SetupIBD': loki_ibd.c:215:102: warning: format '%d' expects argument of type 'int', but argument 5 has type 'long unsigned int' [-Wformat=] 215 | fprintf(stderr,"Asked for 2*n_locations*n_pairs*sizeof(int)=2*%d*%d*%d=%d bytes\n",j,np,sizeof(int),2*j*np*sizeof(int)); | ~^ ~~~~~~~~~~~ | | | | int long unsigned int | %ld loki_ibd.c:215:105: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long unsigned int' [-Wformat=] 215 | fprintf(stderr,"Asked for 2*n_locations*n_pairs*sizeof(int)=2*%d*%d*%d=%d bytes\n",j,np,sizeof(int),2*j*np*sizeof(int)); | ~^ ~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld pass_founder_genes.c: In function 'pass_founder_genes': pass_founder_genes.c:35:47: warning: variable 'locus1' set but not used [-Wunused-but-set-variable] 35 | int i,i1,j,s,**genes,**seg,comp,cs,nc,locus1; | ^~~~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_peel.o loki_peel.c param_lex.l: In function 'yylex': param_lex.l:91:11: warning: 'strncpy' specified bound 512 equals destination size [-Wstringop-truncation] 91 | (void)strncpy(linebuf,yytext+1,512); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ param_lex.l:64:11: warning: 'strncpy' specified bound 512 equals destination size [-Wstringop-truncation] 64 | (void)strncpy(linebuf,yytext,512); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_init.o loki_init.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o alloc_loki.o alloc_loki.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_sample.o loki_sample.c loki_init.c: In function 'InitValues': loki_init.c:125:38: warning: this statement may fall through [-Wimplicit-fallthrough=] 125 | tau_beta[mod]*=residual_var[mod]; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ loki_init.c:126:18: note: here 126 | case 1: | ^~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_pen.o loki_pen.c pass_founder_genes.c: In function 'pass_founder_genes2': pass_founder_genes.c:447:44: warning: 'g[0]' may be used uninitialized [-Wmaybe-uninitialized] 447 | for(s=0;s<2;s++) if(genes[s][i]!=g[s]) { | ^ pass_founder_genes.c:426:32: note: 'g[0]' was declared here 426 | int i,i1,j,k,s,**genes,g[2],fg=0,*hap; | ^ pass_founder_genes.c:447:44: warning: 'g[1]' may be used uninitialized [-Wmaybe-uninitialized] 447 | for(s=0;s<2;s++) if(genes[s][i]!=g[s]) { | ^ pass_founder_genes.c:426:32: note: 'g[1]' was declared here 426 | int i,i1,j,k,s,**genes,g[2],fg=0,*hap; | ^ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_tlmoves.o loki_tlmoves.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o meiosis_scan.o meiosis_scan.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_identity.o loki_identity.c loki_tlmoves.c: In function 'sample_mpos': loki_tlmoves.c:152:36: warning: variable 'idd' set but not used [-Wunused-but-set-variable] 152 | int i,j,locus,k2=-1,k3,ids,idd,sx,**seg,s,s1; | ^~~ meiosis_scan.c: In function 'meiosis_scan': meiosis_scan.c:162:76: warning: variable 'n_comp1' set but not used [-Wunused-but-set-variable] 162 | int sex,kid,**seg,**seg1,kid1,nkids1,*kids1,lffg,symflag,n_qtl,qtl,n_comp1; | ^~~~~~~ loki_peel.c: In function 'peel_locus': loki_peel.c:427:43: warning: 'z' may be used uninitialized [-Wmaybe-uninitialized] 427 | if(z== -DBL_MAX) { | ^ loki_peel.c:145:26: note: 'z' was declared here 145 | double like=0.0,like1,z,z1,theta,Mtp[2],Ptp[2],*pos,*eff,**count,*tpp,*freq1,*count1; | ^ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sample_rand.o sample_rand.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sample_effects.o sample_effects.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_setup.o loki_setup.c loki_tlmoves.c:210:61: warning: 'x' may be used uninitialized [-Wmaybe-uninitialized] 210 | r=.5*(1.0-exp(.02*(x-x1))); | ~~^~~~ loki_tlmoves.c:153:48: note: 'x' was declared here 153 | double pp[2][50],ct1[2][50],ct2[2][50],x,x1,r,z,z1; | ^ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_dump.o loki_dump.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sample_cens.o sample_cens.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o handle_res.o handle_res.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o print_data.o print_data.c loki_tlmoves.c: In function 'get_tl_position': loki_tlmoves.c:623:17: warning: 'z' may be used uninitialized [-Wmaybe-uninitialized] 623 | prior[i]+=z; | ^~ loki_tlmoves.c:606:16: note: 'z' was declared here 606 | double z,z1,z2,map_length; | ^ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o calc_var_locus.o calc_var_locus.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_output.o loki_output.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sample_nu.o sample_nu.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_complex_peel.o loki_complex_peel.c loki_output.c: In function 'OutputSample': loki_output.c:345:17: warning: this statement may fall through [-Wimplicit-fallthrough=] 345 | OutputSample_2(fptr,lp); | ^~~~~~~~~~~~~~~~~~~~~~~ loki_output.c:346:10: note: here 346 | case OUTPUT_VERSION_2_3: | ^~~~ loki_complex_peel.c: In function 'loki_complex_peelop': loki_complex_peel.c:458:169: warning: format '%d' expects argument of type 'int', but argument 8 has type 'long unsigned int' [-Wformat=] 458 | (void)fprintf(stderr,"\nToo many individuals in output R-Function for marker %s\nn_peel = %d, n_all = %d, n_bits1 = %d, required size = %d, LONG_BIT = %d\n",marker[locus].name,n_peel,n_all,n_bits1,n_peel*n_bits1,LK_LONG_BIT); | ~^ | | | int | %ld loki_complex_peel.c:379:16: warning: variable 'max_terms' set but not used [-Wunused-but-set-variable] 379 | double max_terms,*tp,prob=0.0,z,p1,Konst=0.0; | ^~~~~~~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_npl.o loki_npl.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_simple_sample.o loki_simple_sample.c loki_simple_sample.c: In function 'loki_simple_sample': loki_simple_sample.c:25:58: warning: variable 'tpp2' set but not used [-Wunused-but-set-variable] 25 | double *tp,p1,p2,z,z1,prob=0.0,pp[4],*tmp,*tpp1,*tpp2; | ^~~~ loki_simple_sample.c:25:52: warning: variable 'tpp1' set but not used [-Wunused-but-set-variable] 25 | double *tp,p1,p2,z,z1,prob=0.0,pp[4],*tmp,*tpp1,*tpp2; | ^~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_simple_peel.o loki_simple_peel.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_trait_simple_peel.o loki_trait_simple_peel.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_trait_simple_sample.o loki_trait_simple_sample.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o get_par_probs.o get_par_probs.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o read_solar_idfile.o read_solar_idfile.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o peel_to_par.o peel_to_par.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o update_segs.o update_segs.c loki_simple_peel.c: In function 'loki_simple_peelop': loki_simple_peel.c:601:54: warning: 'cm[0]' may be used uninitialized [-Wmaybe-uninitialized] 601 | id_set2[i]=(cm[X_MAT]&a1)?lump[X_MAT]:i; | ~~~~~~~~~~^~~~ loki_simple_peel.c:27:28: note: 'cm[0]' was declared here 27 | lk_ulong a,b,a1,b1,cm[2],*tmp_idx,*tmp_idx1,*cmm[2],mask; | ^~ loki_simple_peel.c:600:54: warning: 'cm[1]' may be used uninitialized [-Wmaybe-uninitialized] 600 | id_set1[i]=(cm[X_PAT]&a1)?l:i1; | ~~~~~~~~~~^~~~ loki_simple_peel.c:27:28: note: 'cm[1]' was declared here 27 | lk_ulong a,b,a1,b1,cm[2],*tmp_idx,*tmp_idx1,*cmm[2],mask; | ^~ /usr/bin/ar cr libloki.a param_parse.o param_lex.o read_binfiles.o loki_utils.o kinship.o genedrop.o mat_utils.o output_recomb.o seg_pen.o gen_pen.o loki_ibd.o get_founders.o pass_founder_genes.o loki_simple_peel.c: In function 'loki_simple_peelop_x': loki_simple_peel.c:1279:54: warning: 'cm[0]' may be used uninitialized [-Wmaybe-uninitialized] 1279 | id_set2[i]=(cm[X_MAT]&a1)?lump[X_MAT]:i; | ~~~~~~~~~~^~~~ loki_simple_peel.c:723:28: note: 'cm[0]' was declared here 723 | lk_ulong a,b,a1,b1,cm[2],*tmp_idx,*tmp_idx1,*cmm[2],mask; | ^~ loki_simple_peel.c:1278:54: warning: 'cm[1]' may be used uninitialized [-Wmaybe-uninitialized] 1278 | id_set1[i]=(cm[X_PAT]&a1)?l:i1; | ~~~~~~~~~~^~~~ loki_simple_peel.c:723:28: note: 'cm[1]' was declared here 723 | lk_ulong a,b,a1,b1,cm[2],*tmp_idx,*tmp_idx1,*cmm[2],mask; | ^~ /usr/bin/ranlib libloki.a gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o loki loki.o loki_peel.o loki_init.o alloc_loki.o loki_sample.o loki_pen.o loki_tlmoves.o meiosis_scan.o loki_identity.o sample_rand.o sample_effects.o loki_setup.o loki_dump.o sample_cens.o handle_res.o print_data.o calc_var_locus.o loki_output.o sample_nu.o loki_complex_peel.o loki_npl.o loki_simple_sample.o loki_simple_peel.o loki_trait_simple_peel.o loki_trait_simple_sample.o get_par_probs.o read_solar_idfile.o peel_to_par.o update_segs.o -Wl,-z,relro -Wl,-z,now -L. -L../libsrc -lloki -lgen -lm /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here collect2: error: ld returned 1 exit status make[2]: *** [Makefile:70: loki] Error 1 make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/lokisrc' make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/utils' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o qavg qavg.c -Wl,-z,relro -Wl,-z,now -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o hist hist.c -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/utils' make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4' cd test; if [ -f Makefile ] ; then make ; fi make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/test' /usr/bin/sed s+SED+/usr/bin/sed+g loki_test.in|/usr/bin/sed s+PREP+../prepsrc/prep+g|\ /usr/bin/sed s+LOKI+../lokisrc/loki+g|/usr/bin/sed s+GREP+/usr/bin/grep+g > tmp cp tmp loki_test && chmod 755 loki_test /usr/bin/sed s+COMPRESS+/usr/bin/gzip+g control_gaw9.in > tmp cp tmp control_gaw9 JV test 1 ... Failed JV test 2 ... Failed JV censored data test ... Failed LM sample test ... Failed Major gene test ... Failed GAW9 test ... Failed JV restart test ... Failed make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/test' make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4' dh_auto_test -Nloki create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4' dh_auto_install -a make -j12 install DESTDIR=/build/reproducible-path/loki-2.4.7.4/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4' for subdir in libsrc prepsrc lokisrc utils; do \ (cd $subdir; make) \ done make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/libsrc' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/libsrc' make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc' (cd compat; make) make[4]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc/compat' make[4]: 'libcompat.a' is up to date. make[4]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc/compat' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o prep prep.o calc_nrm.o write_report.o prep_utils.o gen_elim.o prep_do_peel_op.o write_data.o -Wl,-z,relro -Wl,-z,now -L. -L../libsrc -lprep -lgen -Lcompat -lcompat -lm /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/./prepsrc/compat/merlin.c:41: multiple definition of `strip_vars'; prep.o:./prepsrc/./prepsrc/prep.c:43: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here collect2: error: ld returned 1 exit status make[3]: *** [Makefile:51: prep] Error 1 make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc' make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/lokisrc' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o loki loki.o loki_peel.o loki_init.o alloc_loki.o loki_sample.o loki_pen.o loki_tlmoves.o meiosis_scan.o loki_identity.o sample_rand.o sample_effects.o loki_setup.o loki_dump.o sample_cens.o handle_res.o print_data.o calc_var_locus.o loki_output.o sample_nu.o loki_complex_peel.o loki_npl.o loki_simple_sample.o loki_simple_peel.o loki_trait_simple_peel.o loki_trait_simple_sample.o get_par_probs.o read_solar_idfile.o peel_to_par.o update_segs.o -Wl,-z,relro -Wl,-z,now -L. -L../libsrc -lloki -lgen -lm /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here collect2: error: ld returned 1 exit status make[3]: *** [Makefile:70: loki] Error 1 make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/lokisrc' make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/utils' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/utils' for subdir in prepsrc lokisrc utils; do \ (cd $subdir; make install) \ done make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc' (cd compat; make) mkdir ../bin make[4]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc/compat' make[4]: 'libcompat.a' is up to date. make[4]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc/compat' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o prep prep.o calc_nrm.o write_report.o prep_utils.o gen_elim.o prep_do_peel_op.o write_data.o -Wl,-z,relro -Wl,-z,now -L. -L../libsrc -lprep -lgen -Lcompat -lcompat -lm /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/./prepsrc/compat/merlin.c:41: multiple definition of `strip_vars'; prep.o:./prepsrc/./prepsrc/prep.c:43: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here collect2: error: ld returned 1 exit status make[3]: *** [Makefile:51: prep] Error 1 make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc' make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/lokisrc' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o loki loki.o loki_peel.o loki_init.o alloc_loki.o loki_sample.o loki_pen.o loki_tlmoves.o meiosis_scan.o loki_identity.o sample_rand.o sample_effects.o loki_setup.o loki_dump.o sample_cens.o handle_res.o print_data.o calc_var_locus.o loki_output.o sample_nu.o loki_complex_peel.o loki_npl.o loki_simple_sample.o loki_simple_peel.o loki_trait_simple_peel.o loki_trait_simple_sample.o get_par_probs.o read_solar_idfile.o peel_to_par.o update_segs.o -Wl,-z,relro -Wl,-z,now -L. -L../libsrc -lloki -lgen -lm /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here collect2: error: ld returned 1 exit status make[3]: *** [Makefile:70: loki] Error 1 make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/lokisrc' make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/utils' for file in ext count dist freq sort_error; do \ /usr/bin/sed 's!+PERLPROG+!/usr/bin/perl!' $file.in > /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/loki_$file; \ /usr/bin/chmod 755 /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/loki_$file; \ done for file in qavg hist; do \ /usr/bin/cp $file /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/; \ /usr/bin/chmod 755 /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/$file ; \ done make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/utils' make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4' make install prefix=/build/reproducible-path/loki-2.4.7.4/debian/loki/usr bindir=/build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin LDFLAGS="-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4' for subdir in libsrc prepsrc lokisrc utils; do \ (cd $subdir; make) \ done make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/libsrc' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/libsrc' make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc' (cd compat; make) make[4]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc/compat' make[4]: 'libcompat.a' is up to date. make[4]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc/compat' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o prep prep.o calc_nrm.o write_report.o prep_utils.o gen_elim.o prep_do_peel_op.o write_data.o -Wl,-z,relro -Wl,-z,now -L. -L../libsrc -lprep -lgen -Lcompat -lcompat -lm /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/./prepsrc/compat/merlin.c:41: multiple definition of `strip_vars'; prep.o:./prepsrc/./prepsrc/prep.c:43: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here collect2: error: ld returned 1 exit status make[3]: *** [Makefile:51: prep] Error 1 make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc' make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/lokisrc' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o loki loki.o loki_peel.o loki_init.o alloc_loki.o loki_sample.o loki_pen.o loki_tlmoves.o meiosis_scan.o loki_identity.o sample_rand.o sample_effects.o loki_setup.o loki_dump.o sample_cens.o handle_res.o print_data.o calc_var_locus.o loki_output.o sample_nu.o loki_complex_peel.o loki_npl.o loki_simple_sample.o loki_simple_peel.o loki_trait_simple_peel.o loki_trait_simple_sample.o get_par_probs.o read_solar_idfile.o peel_to_par.o update_segs.o -Wl,-z,relro -Wl,-z,now -L. -L../libsrc -lloki -lgen -lm /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here collect2: error: ld returned 1 exit status make[3]: *** [Makefile:70: loki] Error 1 make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/lokisrc' make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/utils' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/utils' for subdir in prepsrc lokisrc utils; do \ (cd $subdir; make install) \ done make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc' (cd compat; make) make[4]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc/compat' make[4]: 'libcompat.a' is up to date. make[4]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc/compat' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o prep prep.o calc_nrm.o write_report.o prep_utils.o gen_elim.o prep_do_peel_op.o write_data.o -Wl,-z,relro -Wl,-z,now -L. -L../libsrc -lprep -lgen -Lcompat -lcompat -lm /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/./prepsrc/compat/merlin.c:41: multiple definition of `strip_vars'; prep.o:./prepsrc/./prepsrc/prep.c:43: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here collect2: error: ld returned 1 exit status make[3]: *** [Makefile:51: prep] Error 1 make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc' make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/lokisrc' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o loki loki.o loki_peel.o loki_init.o alloc_loki.o loki_sample.o loki_pen.o loki_tlmoves.o meiosis_scan.o loki_identity.o sample_rand.o sample_effects.o loki_setup.o loki_dump.o sample_cens.o handle_res.o print_data.o calc_var_locus.o loki_output.o sample_nu.o loki_complex_peel.o loki_npl.o loki_simple_sample.o loki_simple_peel.o loki_trait_simple_peel.o loki_trait_simple_sample.o get_par_probs.o read_solar_idfile.o peel_to_par.o update_segs.o -Wl,-z,relro -Wl,-z,now -L. -L../libsrc -lloki -lgen -lm /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here collect2: error: ld returned 1 exit status make[3]: *** [Makefile:70: loki] Error 1 make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/lokisrc' make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/utils' for file in ext count dist freq sort_error; do \ /usr/bin/sed 's!+PERLPROG+!/usr/bin/perl!' $file.in > /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/loki_$file; \ /usr/bin/chmod 755 /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/loki_$file; \ done for file in qavg hist; do \ /usr/bin/cp $file /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/; \ /usr/bin/chmod 755 /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/$file ; \ done make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/utils' make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4' make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4' debian/rules override_dh_auto_install-indep make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4' # nothing to do here make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4' dh_installdocs dh_installchangelogs dh_installexamples debian/rules override_dh_installman-arch make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4' dh_installman -a for man in hist.1 loki_count.1 loki_dist.1 loki_ext.1 loki_freq.1 loki_sort_error.1 prep.1 qavg.1 ; do \ ln -s loki.1.gz debian/loki/usr/share/man/man1/${man}.gz ; \ done make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4' dh_installman -Nloki dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package loki: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package loki: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'loki-dbgsym' in '../loki-dbgsym_2.4.7.4-11_arm64.deb'. dpkg-deb: building package 'loki' in '../loki_2.4.7.4-11_arm64.deb'. dpkg-deb: building package 'loki-doc' in '../loki-doc_2.4.7.4-11_all.deb'. dpkg-genbuildinfo --build=binary -O../loki_2.4.7.4-11_arm64.buildinfo dpkg-genchanges --build=binary -O../loki_2.4.7.4-11_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3282740 and its subdirectories I: Current time: Sun Nov 17 12:04:58 -12 2024 I: pbuilder-time-stamp: 1731888298 Mon Nov 18 00:05:00 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink02-arm64.debian.net. Mon Nov 18 00:05:00 UTC 2024 I: Preparing to do remote build '2' on codethink02-arm64.debian.net. Mon Nov 18 00:06:07 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. Mon Nov 18 00:06:08 UTC 2024 I: loki_2.4.7.4-11_arm64.changes: Format: 1.8 Date: Sun, 17 Nov 2024 20:00:09 +0100 Source: loki Binary: loki loki-dbgsym loki-doc Architecture: arm64 all Version: 2.4.7.4-11 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alexandre Detiste Description: loki - MCMC linkage analysis on general pedigrees loki-doc - MCMC linkage analysis on general pedigrees (PS manual) Changes: loki (2.4.7.4-11) unstable; urgency=medium . * Team Upload * Switch to DebHelper 13 * Set Rules-Requires-Root: no * Apply Multi-Arch: hint Checksums-Sha1: 72566f4688c233eded72a541bd1337a654368591 15440 loki-dbgsym_2.4.7.4-11_arm64.deb f023d12c8fc1a183390f1fffa2fc745a1b41729a 224208 loki-doc_2.4.7.4-11_all.deb 8f1290cad6e59939ee7cd80f989121ec629760de 5185 loki_2.4.7.4-11_arm64.buildinfo cf5bcc9c6eb369b010ebd6869754b4df641cc306 34336 loki_2.4.7.4-11_arm64.deb Checksums-Sha256: e5c4453d95393875134159f009b1de50091642682d8aabab0378b9fbc32d268f 15440 loki-dbgsym_2.4.7.4-11_arm64.deb 2acd32d4c5d2b9e223f5c9f9109d7292306e75d3fa65abf029c3b5785973308a 224208 loki-doc_2.4.7.4-11_all.deb 8cf8db647b3e069ea42b690053ce65e48143d7a7cfad743bbc342ff18b77ae81 5185 loki_2.4.7.4-11_arm64.buildinfo a4ad9e2ec2308f3bf7e3716a439469cf966de0b6050ba1831ee12cabe0a88e73 34336 loki_2.4.7.4-11_arm64.deb Files: c50a6ad29abc56cdac417c796bc848d1 15440 debug optional loki-dbgsym_2.4.7.4-11_arm64.deb 4a400d4ae953b11050c0972a4f091270 224208 doc optional loki-doc_2.4.7.4-11_all.deb 0563935b876ea18cf4057fed6a716347 5185 science optional loki_2.4.7.4-11_arm64.buildinfo b6660fb883024a039a66b7fc1e7f48e9 34336 science optional loki_2.4.7.4-11_arm64.deb Mon Nov 18 00:06:09 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_22-39505.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.fgLXSaGl/loki_2.4.7.4-11.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.fgLXSaGl/loki_2.4.7.4-11.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.fgLXSaGl/loki_2.4.7.4-11.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.fgLXSaGl/b1/loki_2.4.7.4-11_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.fgLXSaGl/b2/loki_2.4.7.4-11_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.331s) 0.331s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.016s) 0.016s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 615ms CPU time consumed: 616ms Mon Nov 18 00:06:10 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Mon Nov 18 00:06:10 UTC 2024 I: loki from unstable built successfully and reproducibly on arm64. Mon Nov 18 00:06:11 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Nov 18 00:06:11 UTC 2024 I: Submitting 8.0K b1/loki_2.4.7.4-11_arm64.buildinfo.asc Mon Nov 18 00:06:12 UTC 2024 I: Submitting 8.0K b2/loki_2.4.7.4-11_arm64.buildinfo.asc Mon Nov 18 00:06:12 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Nov 18 00:06:12 UTC 2024 I: Done submitting .buildinfo files. Mon Nov 18 00:06:12 UTC 2024 I: Removing signed loki_2.4.7.4-11_arm64.buildinfo.asc files: removed './b1/loki_2.4.7.4-11_arm64.buildinfo.asc' removed './b2/loki_2.4.7.4-11_arm64.buildinfo.asc'