Wed Jan 29 15:21:34 UTC 2025 I: starting to build libbio-eutilities-perl/unstable/arm64 on jenkins on '2025-01-29 15:21' Wed Jan 29 15:21:34 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_12/80012/console.log Wed Jan 29 15:21:34 UTC 2025 I: Downloading source for unstable/libbio-eutilities-perl=1.77-3 --2025-01-29 15:21:34-- http://deb.debian.org/debian/pool/main/libb/libbio-eutilities-perl/libbio-eutilities-perl_1.77-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2551 (2.5K) [text/prs.lines.tag] Saving to: ‘libbio-eutilities-perl_1.77-3.dsc’ 0K .. 100% 371M=0s 2025-01-29 15:21:34 (371 MB/s) - ‘libbio-eutilities-perl_1.77-3.dsc’ saved [2551/2551] Wed Jan 29 15:21:34 UTC 2025 I: libbio-eutilities-perl_1.77-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-eutilities-perl Binary: libbio-eutilities-perl Architecture: all Version: 1.77-3 Maintainer: Debian Perl Group <pkg-perl-maintainers@lists.alioth.debian.org> Uploaders: Carnë Draug <carandraug+dev@gmail.com> Homepage: https://metacpan.org/release/Bio-EUtilities Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libbio-eutilities-perl Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libbio-eutilities-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: libbio-asn1-entrezgene-perl <!nocheck>, libbio-perl-perl <!nocheck>, libhttp-message-perl <!nocheck>, libtext-csv-perl <!nocheck>, liburi-perl <!nocheck>, libwww-perl <!nocheck>, libxml-libxml-perl <!nocheck>, libxml-simple-perl <!nocheck>, perl Package-List: libbio-eutilities-perl deb perl optional arch=all Checksums-Sha1: ee2a4960ae19eb212b9c9d8f81f149c80a9f9b65 98643 libbio-eutilities-perl_1.77.orig.tar.gz 539e997fc3b11d045c0eedd7ba74b7d4b0aef1ae 5916 libbio-eutilities-perl_1.77-3.debian.tar.xz Checksums-Sha256: 4d018c8cbda73c3d71487165261a3dfc4e823f8e22747497f6a586d5ad6f737f 98643 libbio-eutilities-perl_1.77.orig.tar.gz eaedb2cd87f95475937aa42708482f4aac252d06972d6fecde8b9df5657f5b88 5916 libbio-eutilities-perl_1.77-3.debian.tar.xz Files: b4f862d0ec104628bce8e280d767adf0 98643 libbio-eutilities-perl_1.77.orig.tar.gz fc3b3cd180026d0252188317ff2870ec 5916 libbio-eutilities-perl_1.77-3.debian.tar.xz Dgit: f1c60e1caef0158c9d1b4c4de12313e114e3b98b debian archive/debian/1.77-3 https://git.dgit.debian.org/libbio-eutilities-perl -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmeX/V0UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpN3Q//anzztouiZFZj1TDqEf5qFgEuzmEV c1RUpz/6CSyinVG4Mr6YDnhMfGa4xX3zdfyBAn9W5cNCegcQ2Jlp9mf5PKu19dbx cLp19hKnOpyDfV3GDzQQXelcg47NY0V/J1muf/vt0sxKxNDdNHhhQlHh4UVS6A9C m1vR6L6/jN3PW0fdGhQEyMLJQQ8Rres/6GghyfV/6EDgxX/HoBdH2ZvWNqpV/KFE nBsBDbomoYQZ05lJKErTCFoj8KtcJUL/WhvKF2plpIlyP+DUOS10Ucpbnl99VyHR r+nDOw/B0BG4O7Bvc0jAUN+MoWNGDmgZtR+fIWfag4w8qCrquP5zV0IqaFmR5q0X 6DKtqEcInMpSGpMBwph5Ie7SZQ/Pt5eJZqFKLdU+nrnizrHh44OkRoeF4tnWb74o OYzroF9en+XY+3wh+xX+Giaw4ENUPIo94cOFGDOrrmRzR01VUccjcklNUG0if15f wPgJW7Dq02sr/R1QdexIE/JWfxjrCoZooB8bAm8f2hYisd3uQvLMn8uVHwtllVXS ZQfhR+17kyh3cAcXNGuVMfihnjFyg8R4h0Cl72HoVteh1x20XOjrBN4hWkwLzsuh Yuopd9y7CbYlzk/rEJhMviyNSQci4keIksGauXaV8WpFSaL4p2k6Ul5DpQozusfI pBoUSJQZr+uY0DU= =uj+2 -----END PGP SIGNATURE----- Wed Jan 29 15:21:34 UTC 2025 I: Checking whether the package is not for us Wed Jan 29 15:21:34 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Wed Jan 29 15:21:34 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Wed Jan 29 15:23:09 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jan 29 03:21:36 -12 2025 I: pbuilder-time-stamp: 1738164096 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-eutilities-perl_1.77-3.dsc] I: copying [./libbio-eutilities-perl_1.77.orig.tar.gz] I: copying [./libbio-eutilities-perl_1.77-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libbio-eutilities-perl_1.77-3.dsc: unsupported subcommand dpkg-source: info: extracting libbio-eutilities-perl in libbio-eutilities-perl-1.77 dpkg-source: info: unpacking libbio-eutilities-perl_1.77.orig.tar.gz dpkg-source: info: unpacking libbio-eutilities-perl_1.77-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying inline-DTDs-on-testsuite dpkg-source: info: applying autopkgtest-compile.patch dpkg-source: info: applying typo.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2964710/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='29625c80d33f4b32bdfa1de9e3495a96' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2964710' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JjyTS0JX/pbuilderrc_3KHS --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JjyTS0JX/b1 --logfile b1/build.log libbio-eutilities-perl_1.77-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2964710/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org> Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libbio-asn1-entrezgene-perl, libbio-perl-perl, libhttp-message-perl, libtext-csv-perl, liburi-perl, libwww-perl, libxml-libxml-perl, libxml-simple-perl, perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19957 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbio-asn1-entrezgene-perl; however: Package libbio-asn1-entrezgene-perl is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on libhttp-message-perl; however: Package libhttp-message-perl is not installed. pbuilder-satisfydepends-dummy depends on libtext-csv-perl; however: Package libtext-csv-perl is not installed. pbuilder-satisfydepends-dummy depends on liburi-perl; however: Package liburi-perl is not installed. pbuilder-satisfydepends-dummy depends on libwww-perl; however: Package libwww-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-libxml-perl; however: Package libxml-libxml-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-simple-perl; however: Package libxml-simple-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbio-asn1-entrezgene-perl{a} libbio-cluster-perl{a} libbio-perl-perl{a} libbio-variation-perl{a} libclone-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libelf1t64{a} libencode-locale-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libproc2-0{a} libtext-charwidth-perl{a} libtext-csv-perl{a} libtext-wrapi18n-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-parser-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml-simple-perl{a} libxml-twig-perl{a} libxml-writer-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} procps{a} sensible-utils{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-perl-run-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libtext-csv-xs-perl libtext-iconv-perl libtie-ixhash-perl libxml-dom-xpath-perl libxml-libxslt-perl libxml-perl libxml-sax-expat-perl libxml-sax-writer-perl libxml-xpath-perl libxml-xpathengine-perl linux-sysctl-defaults lynx perl-tk psmisc wget 0 packages upgraded, 76 newly installed, 0 to remove and 0 not upgraded. Need to get 28.4 MB of archives. After unpacking 105 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-7 [868 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.4.0-2 [1385 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20241223 [164 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-2 [91.5 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libtext-charwidth-perl arm64 0.04-11+b4 [9652 B] Get: 17 http://deb.debian.org/debian unstable/main arm64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 18 http://deb.debian.org/debian unstable/main arm64 ucf all 3.0049 [42.5 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-2 [861 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-2 [539 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 30 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libdata-stag-perl all 0.14-3 [448 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.83-1+b2 [97.5 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get: 58 http://deb.debian.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-2 [323 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libwww-perl all 6.77-1 [183 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libxml-parser-perl arm64 2.47-1+b3 [197 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libxml-twig-perl all 1:3.52-3 [177 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libxml-writer-perl all 0.900-2 [26.8 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libbio-variation-perl all 1.7.5-3 [72.6 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libbio-cluster-perl all 1.7.3-6 [53.3 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libbio-asn1-entrezgene-perl all 1.730-3 [46.3 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libtext-csv-perl all 2.05-1 [115 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-5+b1 [300 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libxml-simple-perl all 2.25-2 [69.8 kB] Fetched 28.4 MB in 0s (80.1 MB/s) Preconfiguring packages ... Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19957 files and directories currently installed.) Preparing to unpack .../00-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-7_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-7) ... Selecting previously unselected package procps. 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Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.45-3+b1) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up libxml-writer-perl (0.900-2) ... Setting up libproc2-0:arm64 (2:4.0.4-7) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-7) ... Setting up netbase (6.4) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up openssl (3.4.0-2) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liburi-perl (5.30-1) ... Setting up libtext-csv-perl (2.05-1) ... Setting up libnet-ssleay-perl:arm64 (1.94-2) ... Setting up automake (1:1.17-2) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.23.1-1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.5.4-2) ... Setting up libnet-http-perl (6.23-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up ucf (3.0049) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-7) ... Setting up libhtml-parser-perl:arm64 (3.83-1+b2) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.24.1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up libxml-parser-perl (2.47-1+b3) ... Setting up libxml-twig-perl (1:3.52-3) ... Setting up libbio-variation-perl (1.7.5-3) ... Setting up libbio-cluster-perl (1.7.3-6) ... Setting up libbio-asn1-entrezgene-perl (1.730-3) ... Processing triggers for libc-bin (2.40-6) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbio-eutilities-perl-1.77/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-eutilities-perl_1.77-3_source.changes dpkg-buildpackage: info: source package libbio-eutilities-perl dpkg-buildpackage: info: source version 1.77-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org> dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-eutilities-perl-1.77=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-eutilities-perl-1.77=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::EUtilities Writing MYMETA.yml and MYMETA.json dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libbio-eutilities-perl-1.77' cp lib/Bio/Tools/EUtilities.pm blib/lib/Bio/Tools/EUtilities.pm cp lib/Bio/Tools/EUtilities/Info.pm blib/lib/Bio/Tools/EUtilities/Info.pm cp lib/Bio/Tools/EUtilities/Summary/Item.pm blib/lib/Bio/Tools/EUtilities/Summary/Item.pm cp lib/Bio/Tools/EUtilities/History.pm blib/lib/Bio/Tools/EUtilities/History.pm cp lib/Bio/Tools/EUtilities/Summary.pm blib/lib/Bio/Tools/EUtilities/Summary.pm cp lib/Bio/Tools/EUtilities/HistoryI.pm blib/lib/Bio/Tools/EUtilities/HistoryI.pm cp lib/Bio/Tools/EUtilities/Summary/DocSum.pm blib/lib/Bio/Tools/EUtilities/Summary/DocSum.pm cp lib/Bio/Tools/EUtilities/Query.pm blib/lib/Bio/Tools/EUtilities/Query.pm cp lib/Bio/Tools/EUtilities/EUtilDataI.pm blib/lib/Bio/Tools/EUtilities/EUtilDataI.pm cp lib/Bio/Tools/EUtilities/Link/UrlLink.pm blib/lib/Bio/Tools/EUtilities/Link/UrlLink.pm cp lib/Bio/Tools/EUtilities/Link.pm blib/lib/Bio/Tools/EUtilities/Link.pm cp lib/Bio/EUtilities.pm blib/lib/Bio/EUtilities.pm cp lib/Bio/Tools/EUtilities/Query/GlobalQuery.pm blib/lib/Bio/Tools/EUtilities/Query/GlobalQuery.pm cp lib/Bio/Tools/EUtilities/EUtilParameters.pm blib/lib/Bio/Tools/EUtilities/EUtilParameters.pm cp lib/Bio/Tools/EUtilities/Summary/ItemContainerI.pm blib/lib/Bio/Tools/EUtilities/Summary/ItemContainerI.pm cp lib/Bio/DB/EUtilities.pm blib/lib/Bio/DB/EUtilities.pm cp lib/Bio/Tools/EUtilities/Info/LinkInfo.pm blib/lib/Bio/Tools/EUtilities/Info/LinkInfo.pm cp lib/Bio/Tools/EUtilities/Info/FieldInfo.pm blib/lib/Bio/Tools/EUtilities/Info/FieldInfo.pm cp lib/Bio/Tools/EUtilities/Link/LinkSet.pm blib/lib/Bio/Tools/EUtilities/Link/LinkSet.pm cp bin/bp_einfo blib/script/bp_einfo "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_einfo cp bin/bp_genbank_ref_extractor blib/script/bp_genbank_ref_extractor "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_genbank_ref_extractor Manifying 2 pod documents Manifying 19 pod documents make[1]: Leaving directory '/build/reproducible-path/libbio-eutilities-perl-1.77' dh_auto_test make -j12 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbio-eutilities-perl-1.77' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t .............. 1..21 ok 1 - Bio/DB/EUtilities.pm loaded ok ok 2 - Bio/EUtilities.pm loaded ok ok 3 - Bio/Tools/EUtilities.pm loaded ok ok 4 - Bio/Tools/EUtilities/EUtilDataI.pm loaded ok ok 5 - Bio/Tools/EUtilities/EUtilParameters.pm loaded ok ok 6 - Bio/Tools/EUtilities/History.pm loaded ok ok 7 - Bio/Tools/EUtilities/HistoryI.pm loaded ok ok 8 - Bio/Tools/EUtilities/Info.pm loaded ok ok 9 - Bio/Tools/EUtilities/Info/FieldInfo.pm loaded ok ok 10 - Bio/Tools/EUtilities/Info/LinkInfo.pm loaded ok ok 11 - Bio/Tools/EUtilities/Link.pm loaded ok ok 12 - Bio/Tools/EUtilities/Link/LinkSet.pm loaded ok ok 13 - Bio/Tools/EUtilities/Link/UrlLink.pm loaded ok ok 14 - Bio/Tools/EUtilities/Query.pm loaded ok ok 15 - Bio/Tools/EUtilities/Query/GlobalQuery.pm loaded ok ok 16 - Bio/Tools/EUtilities/Summary.pm loaded ok ok 17 - Bio/Tools/EUtilities/Summary/DocSum.pm loaded ok ok 18 - Bio/Tools/EUtilities/Summary/Item.pm loaded ok ok 19 - Bio/Tools/EUtilities/Summary/ItemContainerI.pm loaded ok ok 20 - bin/bp_einfo compiled ok ok 21 - bin/bp_genbank_ref_extractor compiled ok ok t/author-eol.t .............. skipped: these tests are for testing by the author t/author-mojibake.t ......... skipped: these tests are for testing by the author t/author-no-tabs.t .......... skipped: these tests are for testing by the author t/author-pod-syntax.t ....... skipped: these tests are for testing by the author t/egquery.t ................. 1..18 ok 1 - get_db ok 2 - get_database ok 3 - get_databases ok 4 - get_term ok 5 - get_count ok 6 - get_count ok 7 - get_count ok 8 - get_GlobalQueries ok 9 - get_term ok 10 - get_term ok 11 - get_term ok 12 - get_term ok 13 - get_term ok 14 - get_term ok 15 - get_term ok 16 - get_term ok 17 - get_term ok 18 - get_term ok t/einfo.t ................... 1..49 ok 1 - get_available_databases ok 2 - get_databases ok 3 - get_db ok 4 - get_record_count ok 5 - get_menu_name ok 6 - get_last_update ok 7 - get_description ok 8 - FieldInfo ok 9 - LinkInfo ok 10 - get_db ok 11 - get_dbs ok 12 - get_record_count ok 13 - get_menu_name ok 14 - get_last_update ok 15 - get_description ok 16 - FieldInfo ok 17 - get_term_count ok 18 - get_field_name ok 19 - get_field_code ok 20 - get_field_description ok 21 - is_date ok 22 - is_singletoken ok 23 - is_hierarchy ok 24 - is_hidden ok 25 - is_numerical ok 26 - get_term_count ok 27 - get_field_name ok 28 - get_field_code ok 29 - get_field_description ok 30 - is_date ok 31 - is_singletoken ok 32 - is_hierarchy ok 33 - is_hidden ok 34 - is_numerical ok 35 - LinkInfo ok 36 - get_dbto ok 37 - get_dbfrom ok 38 - get_link_name ok 39 - get_link_description ok 40 - get_priority ok 41 - get_html_tag ok 42 - get_url ok 43 - get_dbto ok 44 - get_dbfrom ok 45 - get_link_name ok 46 - get_link_description ok 47 - get_priority ok 48 - get_html_tag ok 49 - get_url ok t/elink_acheck.t ............ 1..128 ok 1 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 2 ok 3 - get_ids ok 4 - get_ids ok 5 - uncorrelated LinkSets lump everything together ok 6 ok 7 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 8 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 66 ok 67 - get_ids ok 68 - get_ids ok 69 - correlated LinkSets separate ID data ok 70 ok 71 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 72 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok t/elink_lcheck.t ............ 1..62 ok 1 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 2 ok 3 - get_ids ok 4 - uncorrelated LinkSets lump everything together ok 5 ok 6 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 7 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 33 ok 34 - get_ids ok 35 - correlated LinkSets separate ID data ok 36 ok 37 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 38 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok t/elink_llinks.t ............ 1..84 ok 1 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 2 ok 3 - get_ids ok 4 - uncorrelated LinkSets lump everything together ok 5 ok 6 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 7 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 44 ok 45 - get_ids ok 46 - correlated LinkSets separate ID data ok 47 ok 48 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 49 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok t/elink_ncheck.t ............ 1..58 ok 1 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 2 ok 3 - get_ids ok 4 - uncorrelated LinkSets lump everything together ok 5 ok 6 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 7 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 29 ok 30 - get_ids ok 31 - correlated LinkSets separate ID data ok 32 ok 33 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 34 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok t/elink_neighbor.t .......... 1..61 ok 1 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 2 ok 3 - get_ids ok 4 - uncorrelated LinkSets lump everything together ok 5 ok 6 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 7 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 33 ok 34 - get_ids ok 35 - correlated LinkSets separate ID data ok 36 ok 37 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 38 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok t/elink_neighbor_history.t .. 1..63 ok 1 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 2 ok 3 - get_ids ok 4 - uncorrelated LinkSets lump everything together ok 5 ok 6 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 7 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 8 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::HistoryI' ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 34 ok 35 - get_ids ok 36 - correlated LinkSets separate ID data ok 37 ok 38 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 39 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 40 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::HistoryI' ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok t/elink_scores.t ............ 1..56 ok 1 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 2 ok 3 - get_ids ok 4 - uncorrelated LinkSets lump everything together ok 5 ok 6 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 7 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok t/epost.t ................... 1..15 ok 1 - An object of class 'Bio::Tools::EUtilities::Query' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 2 - An object of class 'Bio::Tools::EUtilities::Query' isa 'Bio::Tools::EUtilities::Query' ok 3 - eutil ok 4 - datatype ok 5 - An object of class 'Bio::Tools::EUtilities::History' isa 'Bio::Tools::EUtilities::HistoryI' ok 6 - An object of class 'Bio::Tools::EUtilities::History' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 7 - eutil ok 8 - eutil ok 9 - get_webenv ok 10 - get_query_key ok 11 - history ok 12 - get_database ok 13 - get_ids ok 14 - get_database ok 15 - get_ids ok t/esearch.t ................. 1..31 ok 1 - get_count ok 2 ok 3 - get_ids ok 4 - get_retstart ok 5 - get_retmax ok 6 - get_translation_from ok 7 - get_translation_to ok 8 - get_db ok 9 - get_database ok 10 - get_term ok 11 - get_db ok 12 - get_database ok 13 - get_term ok 14 - get_corrected_query ok 15 - get_replaced_terms ok 16 - get_count ok 17 - An object of class 'Bio::Tools::EUtilities::History' isa 'Bio::Tools::EUtilities::HistoryI' ok 18 - get_webenv ok 19 - get_query_key ok 20 - history ok 21 - get_ids ok 22 - get_retstart ok 23 - get_retmax ok 24 - get_translation_from ok 25 - get_translation_to ok 26 - get_db ok 27 - get_database ok 28 - get_term ok 29 - get_corrected_query ok 30 - get_replaced_terms ok 31 - get_GlobalQueries ok t/espell.t .................. 1..20 ok 1 - get_db ok 2 - get_dbs ok 3 - get_database ok 4 - get_databases ok 5 - get_term ok 6 - get_corrected_query ok 7 - get_replaced_terms ok 8 - get_replaced_terms ok 9 - get_count ok 10 ok 11 - get_ids ok 12 - get_retstart ok 13 - get_retmax ok 14 - get_translation_from ok 15 - get_translation_to ok 16 - get_db ok 17 - get_dbs ok 18 - get_database ok 19 - get_databases ok 20 - get_term ok t/esummary.t ................ 1..81 ok 1 - An object of class 'Bio::Tools::EUtilities::Summary' isa 'Bio::Tools::EUtilities::Summary' ok 2 ok 3 - An object of class 'Bio::Tools::EUtilities::Summary' isa 'Bio::Tools::EUtilities::Summary' ok 4 ok 5 - get_ids ok 6 ok 7 - An object of class 'Bio::Tools::EUtilities::Summary::DocSum' isa 'Bio::Tools::EUtilities::Summary::DocSum' ok 8 ok 9 ok 10 ok 11 - An object of class 'Bio::Tools::EUtilities::Summary::Item' isa 'Bio::Tools::EUtilities::Summary::Item' ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 - An object of class 'Bio::Tools::EUtilities::Summary::Item' isa 'Bio::Tools::EUtilities::Summary::Item' ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 - An object of class 'Bio::Tools::EUtilities::Summary' isa 'Bio::Tools::EUtilities::Summary' ok 51 ok 52 - An object of class 'Bio::Tools::EUtilities::Summary' isa 'Bio::Tools::EUtilities::Summary' ok 53 ok 54 - get_ids ok 55 ok 56 - An object of class 'Bio::Tools::EUtilities::Summary::DocSum' isa 'Bio::Tools::EUtilities::Summary::DocSum' ok 57 ok 58 ok 59 ok 60 ok 61 - An object of class 'Bio::Tools::EUtilities::Summary::Item' isa 'Bio::Tools::EUtilities::Summary::Item' ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok t/EUtilParameters.t ......... 1..12 ok 1 ok 2 - An object of class 'HTTP::Request' isa 'HTTP::Request' ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 - available_parameters ok 10 - available_parameters ok 11 - get_parameters ok 12 - get_parameters ok t/release-EUtilities.t ...... skipped: these tests are for release candidate testing All tests successful. Files=20, Tests=759, 6 wallclock secs ( 0.09 usr 0.03 sys + 2.55 cusr 0.51 csys = 3.18 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-eutilities-perl-1.77' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-eutilities-perl/ make -j12 install DESTDIR=/build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-eutilities-perl-1.77' Manifying 2 pod documents Manifying 19 pod documents Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/perl5/Bio/EUtilities.pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/perl5/Bio/DB/EUtilities.pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities.pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/EUtilParameters.pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/Link.pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/EUtilDataI.pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/Query.pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/HistoryI.pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/Summary.pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/History.pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/Info.pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/Info/FieldInfo.pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/Info/LinkInfo.pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/Query/GlobalQuery.pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/Link/LinkSet.pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/Link/UrlLink.pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/Summary/ItemContainerI.pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/Summary/DocSum.pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/Summary/Item.pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/man/man1/bp_genbank_ref_extractor.1p Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/man/man1/bp_einfo.1p Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::Summary::ItemContainerI.3pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::Summary::Item.3pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::Summary::DocSum.3pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::Summary.3pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::Query::GlobalQuery.3pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::Query.3pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::Link::UrlLink.3pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::Link::LinkSet.3pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::Link.3pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::Info::LinkInfo.3pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::Info::FieldInfo.3pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::Info.3pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::HistoryI.3pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::History.3pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::EUtilParameters.3pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::EUtilDataI.3pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities.3pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::EUtilities.3pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::DB::EUtilities.3pm Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/bin/bp_einfo Installing /build/reproducible-path/libbio-eutilities-perl-1.77/debian/libbio-eutilities-perl/usr/bin/bp_genbank_ref_extractor make[1]: Leaving directory '/build/reproducible-path/libbio-eutilities-perl-1.77' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-eutilities-perl' in '../libbio-eutilities-perl_1.77-3_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-eutilities-perl_1.77-3_arm64.buildinfo dpkg-genchanges --build=binary -O../libbio-eutilities-perl_1.77-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2964710 and its subdirectories I: Current time: Wed Jan 29 03:23:08 -12 2025 I: pbuilder-time-stamp: 1738164188 Wed Jan 29 15:23:10 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Wed Jan 29 15:23:10 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Wed Jan 29 15:23:53 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Wed Jan 29 15:23:53 UTC 2025 I: libbio-eutilities-perl_1.77-3_arm64.changes: Format: 1.8 Date: Mon, 27 Jan 2025 22:36:12 +0100 Source: libbio-eutilities-perl Binary: libbio-eutilities-perl Architecture: all Version: 1.77-3 Distribution: unstable Urgency: medium Maintainer: Debian Perl Group <pkg-perl-maintainers@lists.alioth.debian.org> Changed-By: Étienne Mollier <emollier@debian.org> Description: libbio-eutilities-perl - BioPerl interface to the Entrez Programming Utilities (E-utilitie Closes: 1093338 Changes: libbio-eutilities-perl (1.77-3) unstable; urgency=medium . * Team upload. * d/{control,rules}: ensure use of the XML::LibXML::SAX parser. (Closes: #1093338) * Declare compliance with Debian Policy 4.7.0. * inline-DTDs-on-testsuite: normalize dep3 header. The patch from originates upstream, hence the forwarding status. * typo.patch: fix a typo caught by lintian. Checksums-Sha1: 0a92b29c4d825a28980298e5c7047ccbb08c54bb 118612 libbio-eutilities-perl_1.77-3_all.deb a044784231ff4478fea32c51e5038fb36536b9ed 6339 libbio-eutilities-perl_1.77-3_arm64.buildinfo Checksums-Sha256: 1335b1a049d8ecc558f4fe88baf1d8ace1567a95e6bd77f5495392f8350d705a 118612 libbio-eutilities-perl_1.77-3_all.deb 291d8d2a4ab29cfc0c353bcb77c8b40957b3fb91a31681c824f1bf12e10501ff 6339 libbio-eutilities-perl_1.77-3_arm64.buildinfo Files: 92f1e4eeeecedc98c0de029f12d704ac 118612 perl optional libbio-eutilities-perl_1.77-3_all.deb 27cd98092ad47a361d139091c5c364f2 6339 perl optional libbio-eutilities-perl_1.77-3_arm64.buildinfo Wed Jan 29 15:23:54 UTC 2025 I: diffoscope 286 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_12-80012.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.JjyTS0JX/libbio-eutilities-perl_1.77-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.JjyTS0JX/libbio-eutilities-perl_1.77-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.JjyTS0JX/libbio-eutilities-perl_1.77-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.JjyTS0JX/b1/libbio-eutilities-perl_1.77-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.JjyTS0JX/b2/libbio-eutilities-perl_1.77-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 218ms CPU time consumed: 219ms Wed Jan 29 15:23:55 UTC 2025 I: diffoscope 286 found no differences in the changes files, and a .buildinfo file also exists. Wed Jan 29 15:23:55 UTC 2025 I: libbio-eutilities-perl from unstable built successfully and reproducibly on arm64. Wed Jan 29 15:23:56 UTC 2025 I: Submitting .buildinfo files to external archives: Wed Jan 29 15:23:56 UTC 2025 I: Submitting 8.0K b1/libbio-eutilities-perl_1.77-3_arm64.buildinfo.asc Wed Jan 29 15:23:57 UTC 2025 I: Submitting 8.0K b2/libbio-eutilities-perl_1.77-3_arm64.buildinfo.asc Wed Jan 29 15:23:57 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Jan 29 15:23:57 UTC 2025 I: Done submitting .buildinfo files. Wed Jan 29 15:23:57 UTC 2025 I: Removing signed libbio-eutilities-perl_1.77-3_arm64.buildinfo.asc files: removed './b1/libbio-eutilities-perl_1.77-3_arm64.buildinfo.asc' removed './b2/libbio-eutilities-perl_1.77-3_arm64.buildinfo.asc'