Tue Sep 3 11:12:23 UTC 2024 I: starting to build indelible/unstable/arm64 on jenkins on '2024-09-03 11:12' Tue Sep 3 11:12:23 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_11/59887/console.log Tue Sep 3 11:12:23 UTC 2024 I: Downloading source for unstable/indelible=1.03-6 --2024-09-03 11:12:24-- http://deb.debian.org/debian/pool/main/i/indelible/indelible_1.03-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2145 (2.1K) [text/prs.lines.tag] Saving to: ‘indelible_1.03-6.dsc’ 0K .. 100% 268M=0s 2024-09-03 11:12:24 (268 MB/s) - ‘indelible_1.03-6.dsc’ saved [2145/2145] Tue Sep 3 11:12:24 UTC 2024 I: indelible_1.03-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: indelible Binary: indelible Architecture: any Version: 1.03-6 Maintainer: Debian Med Packaging Team Uploaders: Fabian Klötzl , Étienne Mollier Homepage: http://abacus.gene.ucl.ac.uk/software/indelible/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/indelible Vcs-Git: https://salsa.debian.org/med-team/indelible.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: indelible deb science optional arch=any Checksums-Sha1: 187d199eccb29718e76fc5992092f86214f4c6e4 196596 indelible_1.03.orig.tar.xz 2dd46f9f745dc4dd91f89de0718f396bf58d13a2 53144 indelible_1.03-6.debian.tar.xz Checksums-Sha256: 60ed2a8fd50608a56a92f708a117194d4a6d23a53e55ecc27bf76e5fdf470c80 196596 indelible_1.03.orig.tar.xz cce6a88c887930827ac2fc70ea1fb5d64066c21a579a8eec11f540db346dca18 53144 indelible_1.03-6.debian.tar.xz Files: 4a06db04f2acab8169c5b3b821759a35 196596 indelible_1.03.orig.tar.xz 5cac75afb480d511f942aefddd5c457f 53144 indelible_1.03-6.debian.tar.xz Dgit: d78219e7ebddf0c93171ba59b5ac666cf36423c8 debian archive/debian/1.03-6 https://git.dgit.debian.org/indelible -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmWQXm8UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrxzBAAslRf4ylggCdvdZBOwhlltuKY7LKA 08yqm94l6jXNpmWP5X9h6l13k5CO0ZpXkRCGmdxPtIAcTqiyYgO8bkcVKet0TzSW Hc0AKK1mGyDMpz3OvlA48hlJ7RB/6YwCCOOBEAJy2xd3adx+A0ZxydVXwR8AO85q 5C36parbsnEd4tPNHQv81rrjyUnVSyY6JV6kkI+CvcgsJm5DMltcJ4XEPl0SJSNg +g6fjB6DXxduSb/EZui5KlN9PMuEmo3u/9dpnU9WTqhvpX7BESECLQBqnVZHXeSi wcNnox5e9WIerJTOpAyNJ/2OiyAoZk/OL6/Oj07n7rGKZlfx6POZsdwMFTRdFY3A JgWsKN0+ywkC/ruRIjr+WpXy0MTF5y32LIA4XPBgO0oeXIJi2qZlQS22WDpqfB9r GZA7iCFqzAbM4xeOuVrkFD+DtfvhHcF0BEqg4W6D1s9bql7AKyvSIFoHuxd7aHIT Lf18f4oaY8RmccpIZaxXep9slO0ecNc30bjABffu9YvYPF+JwFYdy+Abxin8nVvk dQwAS1lBd4XsvmT/Fu4I25Vz+HhV5P74GRle4bIzUFEbQmEWODJwIzdFCAnSc2KC P6MtJ6fO5nV1m+GfLuqCFl9XR9WU7b45HdpLb5+k8NYPsdZ2iL7bY0NL+w8H4STK tX7QlS9sdbNqu9U= =jb7z -----END PGP SIGNATURE----- Tue Sep 3 11:12:24 UTC 2024 I: Checking whether the package is not for us Tue Sep 3 11:12:24 UTC 2024 I: Starting 1st build on remote node codethink03-arm64.debian.net. Tue Sep 3 11:12:24 UTC 2024 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Tue Sep 3 11:13:45 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Oct 6 05:35:26 -12 2025 I: pbuilder-time-stamp: 1759772126 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [indelible_1.03-6.dsc] I: copying [./indelible_1.03.orig.tar.xz] I: copying [./indelible_1.03-6.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Dec 30 18:16:15 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./indelible_1.03-6.dsc: no acceptable signature found dpkg-source: info: extracting indelible in indelible-1.03 dpkg-source: info: unpacking indelible_1.03.orig.tar.xz dpkg-source: info: unpacking indelible_1.03-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-added-headers-for-getpid-2.patch dpkg-source: info: applying 0002-added-documentation-index-page.patch dpkg-source: info: applying 0003-added-manpage.patch dpkg-source: info: applying 0004-added-auto-tools-build-system.patch dpkg-source: info: applying 0005-remove-unnecessary-whitespace-from-the-end-of-sequen.patch dpkg-source: info: applying 0006-spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3915464/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='7d29aea0aa7f4bb5895560e79ab21a8c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3915464' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JzQLjT10/pbuilderrc_UqN2 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JzQLjT10/b1 --logfile b1/build.log indelible_1.03-6.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3915464/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19879 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.4 MB of archives. After unpacking 77.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-7 [96.5 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.191-2 [188 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg-3+b1 [609 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Fetched 19.4 MB in 0s (136 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19879 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-7_arm64.deb ... Unpacking bsdextrautils (2.40.2-7) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.191-2_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../23-libicu72_72.1-5_arm64.deb ... Unpacking libicu72:arm64 (72.1-5) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg-3+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg-3+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-5) ... Setting up bsdextrautils (2.40.2-7) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-2) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libxml2:arm64 (2.12.7+dfsg-3+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/indelible-1.03/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../indelible_1.03-6_source.changes dpkg-buildpackage: info: source package indelible dpkg-buildpackage: info: source version 1.03-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:4: installing './compile' configure.ac:16: installing './config.guess' configure.ac:16: installing './config.sub' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' Makefile.am:2: warning: source file 'src/indelible.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least one source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, this automake: behavior may change in a future Automake major version, with object automake: files being placed in the same subdirectory as the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. Makefile.am:8: warning: source file 'src/control.cpp' is in a subdirectory, Makefile.am:8: but option 'subdir-objects' is disabled Makefile.am:8: warning: source file 'src/models.cpp' is in a subdirectory, Makefile.am:8: but option 'subdir-objects' is disabled Makefile.am:8: warning: source file 'src/paml.cpp' is in a subdirectory, Makefile.am:8: but option 'subdir-objects' is disabled Makefile.am:8: warning: source file 'src/randoms.cpp' is in a subdirectory, Makefile.am:8: but option 'subdir-objects' is disabled Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking for cos in -lm... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for size_t... yes checking for int32_t... yes checking for uint32_t... yes checking for _Bool... no checking for stdbool.h that conforms to C99 or later... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for GNU libc compatible malloc... yes checking for limits.h... yes checking for floor... yes checking for pow... yes checking for sqrt... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/indelible-1.03' g++ -DPACKAGE_NAME=\"indelible\" -DPACKAGE_TARNAME=\"indelible\" -DPACKAGE_VERSION=\"1.03\" -DPACKAGE_STRING=\"indelible\ 1.03\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"indelible\" -DVERSION=\"1.03\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_LIMITS_H=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -I. -Isrc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/indelible-1.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o indelible-indelible.o `test -f 'src/indelible.cpp' || echo './'`src/indelible.cpp In file included from src/randoms.cpp:31, from src/paml.cpp:41, from src/models.cpp:35, from src/control.cpp:38, from src/indelible.cpp:135: src/MersenneTwister.h: In member function 'MTRand::uint32 MTRand::randInt()': src/MersenneTwister.h:187:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 187 | register uint32 s1; | ^~ src/MersenneTwister.h: In member function 'void MTRand::seed(uint32*, uint32)': src/MersenneTwister.h:232:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 232 | register int i = 1; | ^ src/MersenneTwister.h:233:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 233 | register uint32 j = 0; | ^ src/MersenneTwister.h:234:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 234 | register int k = ( N > seedLength ? N : seedLength ); | ^ src/MersenneTwister.h: In member function 'void MTRand::initialize(uint32)': src/MersenneTwister.h:273:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 273 | register uint32 *s = state; | ^ src/MersenneTwister.h:274:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 274 | register uint32 *r = state; | ^ src/MersenneTwister.h:275:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 275 | register int i = 1; | ^ src/MersenneTwister.h: In member function 'void MTRand::reload()': src/MersenneTwister.h:289:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 289 | register uint32 *p = state; | ^ src/MersenneTwister.h:290:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 290 | register int i; | ^ src/MersenneTwister.h: In member function 'void MTRand::save(uint32*) const': src/MersenneTwister.h:395:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 395 | register uint32 *sa = saveArray; | ^~ src/MersenneTwister.h:396:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 396 | register const uint32 *s = state; | ^ src/MersenneTwister.h:397:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 397 | register int i = N; | ^ src/MersenneTwister.h: In member function 'void MTRand::load(uint32*)': src/MersenneTwister.h:405:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 405 | register uint32 *s = state; | ^ src/MersenneTwister.h:406:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 406 | register uint32 *la = loadArray; | ^~ src/MersenneTwister.h:407:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 407 | register int i = N; | ^ src/MersenneTwister.h: In function 'std::ostream& operator<<(std::ostream&, const MTRand&)': src/MersenneTwister.h:416:40: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 416 | register const MTRand::uint32 *s = mtrand.state; | ^ src/MersenneTwister.h:417:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 417 | register int i = mtrand.N; | ^ src/MersenneTwister.h: In function 'std::istream& operator>>(std::istream&, MTRand&)': src/MersenneTwister.h:425:34: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 425 | register MTRand::uint32 *s = mtrand.state; | ^ src/MersenneTwister.h:426:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 426 | register int i = mtrand.N; | ^ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/indelible-1.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o indelible indelible-indelible.o -lm make[1]: Leaving directory '/build/reproducible-path/indelible-1.03' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/indelible/ make -j12 install DESTDIR=/build/reproducible-path/indelible-1.03/debian/indelible AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/indelible-1.03' make[2]: Entering directory '/build/reproducible-path/indelible-1.03' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/man/man1' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible' /usr/bin/install -c -m 644 indelible.1 '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/man/man1' /usr/bin/install -c indelible '/build/reproducible-path/indelible-1.03/debian/indelible/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/example_files' /usr/bin/install -c -m 644 help/example_files/AMINOACID.shtml help/example_files/basicaminoacid.shtml help/example_files/basiccodon.shtml help/example_files/basicnucleotide.shtml help/example_files/basic.shtml help/example_files/branch2.shtml help/example_files/branch.shtml help/example_files/codon_RATES.txt help/example_files/CODON.shtml help/example_files/CODONsites.shtml help/example_files/indels.shtml help/example_files/multi-partitions.shtml help/example_files/mylengthmodel.txt help/example_files/nucleotide-branch.shtml help/example_files/nucleotide_RATES.txt help/example_files/NUCLEOTIDE.shtml help/example_files/random_branch_length_trees.JPG help/example_files/rates.shtml help/example_files/settings.shtml help/example_files/sitebranch.shtml help/example_files/trees.shtml help/example_files/trees.txt help/example_files/userAAmodel.txt '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/example_files' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/manual_files' /usr/bin/install -c -m 644 help/manual_files/branches.shtml help/manual_files/codon_RATES.txt help/manual_files/evolve.shtml help/manual_files/model.shtml help/manual_files/mylengthmodel.txt help/manual_files/nucleotide_RATES.txt help/manual_files/partitions.shtml help/manual_files/random_branch_length_trees.JPG help/manual_files/settings.shtml help/manual_files/symQmatrix.gif help/manual_files/tree.shtml help/manual_files/trees.txt help/manual_files/type.shtml help/manual_files/userAAmodel.txt '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/manual_files' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help' /usr/bin/install -c -m 644 help/index.html help/examples.shtml help/manual.shtml '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help' make[2]: Leaving directory '/build/reproducible-path/indelible-1.03' make[1]: Leaving directory '/build/reproducible-path/indelible-1.03' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'indelible' in '../indelible_1.03-6_arm64.deb'. dpkg-deb: building package 'indelible-dbgsym' in '../indelible-dbgsym_1.03-6_arm64.deb'. dpkg-genbuildinfo --build=binary -O../indelible_1.03-6_arm64.buildinfo dpkg-genchanges --build=binary -O../indelible_1.03-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3915464 and its subdirectories I: Current time: Mon Oct 6 05:36:43 -12 2025 I: pbuilder-time-stamp: 1759772203 Tue Sep 3 11:13:45 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Tue Sep 3 11:13:45 UTC 2024 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Tue Sep 3 11:17:35 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Tue Sep 3 11:17:36 UTC 2024 I: indelible_1.03-6_arm64.changes: Format: 1.8 Date: Sat, 30 Dec 2023 19:11:32 +0100 Source: indelible Binary: indelible indelible-dbgsym Architecture: arm64 Version: 1.03-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: indelible - powerful and flexible simulator of biological evolution Changes: indelible (1.03-6) unstable; urgency=medium . * d/control: add myself to uploaders. * d/control: declare compliance to standards version 4.6.2. * d/s/lintian-overrides: flag false positive error. Checksums-Sha1: 348afd3657b3fc1e548c5e6cc1d4f4ddd53e50ba 2053608 indelible-dbgsym_1.03-6_arm64.deb 54de55df76885f5319c2f94b507e3db3263fde99 4853 indelible_1.03-6_arm64.buildinfo 8684bd79706e871895046dfe48c9b72450261426 367740 indelible_1.03-6_arm64.deb Checksums-Sha256: 7a5021c3a593d625247cfca4b6f9d0d2bcf901aba3699ad7fb6056d50fcb7df2 2053608 indelible-dbgsym_1.03-6_arm64.deb 2059a4aaa66dfe5af5f10aebec43de998bec0f20d94cdc1d04124cb4df7ce6b3 4853 indelible_1.03-6_arm64.buildinfo 0ab3bb0b55b144820e0fd5b46598081b631c9bcab603ea38fb5c13d329aef15b 367740 indelible_1.03-6_arm64.deb Files: 960325a5fde0ea154ba680f0ec18c6a0 2053608 debug optional indelible-dbgsym_1.03-6_arm64.deb 18d7ff149c86920887bb9da387db658e 4853 science optional indelible_1.03-6_arm64.buildinfo ee515494620e57de4de75844c5317984 367740 science optional indelible_1.03-6_arm64.deb Tue Sep 3 11:17:37 UTC 2024 I: diffoscope 277 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_11-59887.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.JzQLjT10/indelible_1.03-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.JzQLjT10/indelible_1.03-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.JzQLjT10/indelible_1.03-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.JzQLjT10/b1/indelible_1.03-6_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.JzQLjT10/b2/indelible_1.03-6_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.401s) 0.401s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.042s) 0.042s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 734ms CPU time consumed: 734ms Tue Sep 3 11:17:38 UTC 2024 I: diffoscope 277 found no differences in the changes files, and a .buildinfo file also exists. Tue Sep 3 11:17:38 UTC 2024 I: indelible from unstable built successfully and reproducibly on arm64. Tue Sep 3 11:17:40 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Sep 3 11:17:40 UTC 2024 I: Submitting 8.0K b1/indelible_1.03-6_arm64.buildinfo.asc Tue Sep 3 11:17:40 UTC 2024 I: Submitting 8.0K b2/indelible_1.03-6_arm64.buildinfo.asc Tue Sep 3 11:17:42 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Sep 3 11:17:42 UTC 2024 I: Done submitting .buildinfo files. Tue Sep 3 11:17:42 UTC 2024 I: Removing signed indelible_1.03-6_arm64.buildinfo.asc files: removed './b1/indelible_1.03-6_arm64.buildinfo.asc' removed './b2/indelible_1.03-6_arm64.buildinfo.asc'