Tue May 14 19:18:04 UTC 2024 I: starting to build custodian/unstable/arm64 on jenkins on '2024-05-14 19:17' Tue May 14 19:18:04 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_21/10937/console.log Tue May 14 19:18:04 UTC 2024 I: Downloading source for unstable/custodian=2024.1.9-3 --2024-05-14 19:18:04-- http://deb.debian.org/debian/pool/main/c/custodian/custodian_2024.1.9-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2315 (2.3K) [text/prs.lines.tag] Saving to: ‘custodian_2024.1.9-3.dsc’ 0K .. 100% 273M=0s 2024-05-14 19:18:04 (273 MB/s) - ‘custodian_2024.1.9-3.dsc’ saved [2315/2315] Tue May 14 19:18:04 UTC 2024 I: custodian_2024.1.9-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: custodian Binary: python3-custodian, python-custodian-doc Architecture: all Version: 2024.1.9-3 Maintainer: Debichem Team Uploaders: Drew Parsons Homepage: https://github.com/materialsproject/custodian Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/debichem-team/custodian Vcs-Git: https://salsa.debian.org/debichem-team/custodian.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-pymatgen, python3-pytest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-setuptools, python3-all, python3-psutil, python3-pymatgen, python3-pytest , python3-sphinx, python3-myst-parser Package-List: python-custodian-doc deb doc optional arch=all python3-custodian deb python optional arch=all Checksums-Sha1: a740c77ffa27561ee99880bc6dad48526302ec2a 43458189 custodian_2024.1.9.orig.tar.gz 2c981b35edb136e951b9fe405de4e7bdcdae4e90 8480 custodian_2024.1.9-3.debian.tar.xz Checksums-Sha256: 3dc42dc545824d1f661c426a338deb4c541a550cee1c83d05baecec8d4f5aea6 43458189 custodian_2024.1.9.orig.tar.gz 1e508d8143b92c605998046431e345924016417c1b814e0c647ebb52e78cff39 8480 custodian_2024.1.9-3.debian.tar.xz Files: 5c59bf2d7de8a044c78cc9f8b175e4a0 43458189 custodian_2024.1.9.orig.tar.gz 486feafd59b5ca21a4027ee5a9ee690c 8480 custodian_2024.1.9-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEI8mpPlhYGekSbQo2Vz7x5L1aAfoFAmXLXooACgkQVz7x5L1a AfpmyQ//WGFT4qc9zdz9pShb2fdPr3o+b0hB61MgJloBueaRBvgiGDODgjsnf7Pq OozqQExE9gmuGGhdqt265D0mxPI8lZeBOVMxTaRTpyrfCIFM7CPXk0KCL39+A33W EJieW/d8/IKAhKUCKfwuO+4Y4m19O5aqVfMK20Ru6khiRdG8Npp6wouqcWCHeh8P nSmqBnm2HSSpZDi3y890SGE87RN3CNFTZjakU+jPOapwyGe/vSQ8jugl+GdCaMCw mdPa/0hQ+T2OUEcSbJKHb4vqVY/lsBIbxr8HCrZXYfA8V1InDZsvLosLujwzmrZT F3tiYsLm+VhoVS6NjKZjEOuI4smGPI+eJs8WrtNsAww8JZqyUQwM7cU7jQLAhY5p 8CMTHDzBAKiZWKB9FcwyEI6UKH8UEQ1LSMygZTxOe1l/lIwKtza5bNrp+E4Mv5wV 4+tn5aFARoMBsYQN7rekOVzPxNg3CFZ6ujXxSSLuc//wu2mQ66MuAx3s9kiTbH1e d0RrTV5zISZjgJQzB3YrlUTaLn6jwiHx+mTSlR+3RZsM/5imC/LujNSTX3twoqLl 1m9Ea+CaeMC45b0P4X8Hk45j9Ee1F0CrkHSYKi9ZsegvfsEGQ8vobIivpbPFmN3X oxPkXINsYTQLGsPoqDnDimuRJFqk/h86fP9zY9eDm19iG0U5dno= =wsGj -----END PGP SIGNATURE----- Tue May 14 19:18:04 UTC 2024 I: Checking whether the package is not for us Tue May 14 19:18:04 UTC 2024 I: Starting 1st build on remote node codethink03-arm64.debian.net. Tue May 14 19:18:04 UTC 2024 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Tue May 14 19:22:08 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jun 16 13:41:06 -12 2025 I: pbuilder-time-stamp: 1750124466 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [custodian_2024.1.9-3.dsc] I: copying [./custodian_2024.1.9.orig.tar.gz] I: copying [./custodian_2024.1.9-3.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Feb 13 12:20:26 2024 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./custodian_2024.1.9-3.dsc: no acceptable signature found dpkg-source: info: extracting custodian in custodian-2024.1.9 dpkg-source: info: unpacking custodian_2024.1.9.orig.tar.gz dpkg-source: info: unpacking custodian_2024.1.9-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying env_test_dir.patch dpkg-source: info: applying test_skip.patch dpkg-source: info: applying doc_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3281282/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='98631c5ed05a423bb34f25d2a14bb703' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3281282' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xnovhz1w/pbuilderrc_oYQC --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xnovhz1w/b1 --logfile b1/build.log custodian_2024.1.9-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 15 14:06 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3281282/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-setuptools, python3-all, python3-psutil, python3-pymatgen, python3-pytest, python3-sphinx, python3-myst-parser dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19745 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-psutil; however: Package python3-psutil is not installed. pbuilder-satisfydepends-dummy depends on python3-pymatgen; however: Package python3-pymatgen is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-myst-parser; however: Package python3-myst-parser is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libpipeline1{a} libpng16-16t64{a} libproc2-0{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libsub-override-perl{a} libsymspg2{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} procps{a} pybuild-plugin-pyproject{a} python-babel-localedata{a} python-matplotlib-data{a} python3{a} python3-alabaster{a} python3-all{a} python3-appdirs{a} python3-attr{a} python3-babel{a} python3-brotli{a} python3-build{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-distutils{a} python3-docutils{a} python3-fastjsonschema{a} python3-fonttools{a} python3-fs{a} python3-hatch-vcs{a} python3-hatchling{a} python3-idna{a} python3-imagesize{a} python3-iniconfig{a} python3-installer{a} python3-jinja2{a} python3-joblib{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-jupyter-core{a} python3-kiwisolver{a} python3-latexcodec{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-markdown-it{a} python3-markupsafe{a} python3-matplotlib{a} python3-mdit-py-plugins{a} python3-mdurl{a} python3-minimal{a} python3-monty{a} python3-mpmath{a} python3-myst-parser{a} python3-nbformat{a} python3-networkx{a} python3-numpy{a} python3-packaging{a} python3-palettable{a} python3-pandas{a} python3-pandas-lib{a} python3-pathspec{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-plotly{a} python3-pluggy{a} python3-psutil{a} python3-pybtex{a} python3-pydantic{a} python3-pygments{a} python3-pymatgen{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pytest{a} python3-referencing{a} python3-requests{a} python3-roman{a} python3-rpds-py{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-scipy{a} python3-setuptools{a} python3-setuptools-scm{a} python3-six{a} python3-snowballstemmer{a} python3-spglib{a} python3-sphinx{a} python3-sympy{a} python3-tabulate{a} python3-tenacity{a} python3-tk{a} python3-toml{a} python3-tqdm{a} python3-traitlets{a} python3-trove-classifiers{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-uncertainties{a} python3-urllib3{a} python3-wheel{a} python3-yaml{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx psmisc python-monty-doc python3-ase python3-bottleneck python3-bs4 python3-cssselect python3-gdal python3-html5lib python3-json-pointer python3-mp-api python3-numexpr python3-odf python3-olefile python3-openbabel python3-openpyxl python3-pydot python3-pygraphviz python3-rfc3987 python3-simplejson python3-tables python3-torch python3-uritemplate python3-webcolors shared-mime-info wget xdg-user-dirs 0 packages upgraded, 206 newly installed, 0 to remove and 0 not upgraded. Need to get 144 MB of archives. After unpacking 723 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.11-minimal arm64 3.11.9-1 [813 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.11-minimal arm64 3.11.9-1 [1767 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-4 [157 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libpython3.11-stdlib arm64 3.11.9-1 [1775 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 python3.11 arm64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.3-1 [802 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.3-1 [1931 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 sgml-base all 1.31 [15.4 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-4 [61.7 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-4 [869 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.2.1-3 [1324 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.1-1 [93.2 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.21-14 [496 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.14+dfsg-1 [975 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b3 [295 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.43-5 [272 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.2+dfsg-1+b4 [408 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-1.1 [317 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-1.1 [385 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.9-1+b1 [18.1 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libbsd0 arm64 0.12.2-1 [129 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.2-3+b1 [24.3 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-1 [143 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.7-1 [328 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1+b1 [27.0 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b1 [51.0 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+23 [252 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b1 [17.0 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libtk8.6 arm64 8.6.14-1 [732 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7 [533 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 blt arm64 2.5.3+dfsg-7 [6024 B] Get: 58 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 65 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.15.3 [901 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 python3-distutils all 3.12.3-1 [131 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 68.1.2-2 [468 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20240422 [107 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 xml-core all 0.19 [20.1 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 docutils-common all 0.20.1+dfsg-3 [128 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 fonts-lyx all 2.4.0~RC4-1 [189 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.20-1 [41.5 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.13-3+b1 [71.3 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14-20240429-1 [361 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.80.2-1 [1393 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2 [69.2 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 8.3.0-2+b1 [2178 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libimagequant0 arm64 2.18.0-1+b1 [34.6 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b1 [30.4 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libjs-sphinxdoc all 7.2.6-7 [150 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libjson-perl all 4.10000-1 [87.5 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b1 [25.0 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.14-2+b1 [144 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-4+b1 [142 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.0-2+b3 [177 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.3-1 [1889 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libqhull-r8.0 arm64 2020.2-6+b1 [226 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libraqm0 arm64 0.10.1-1+b1 [13.7 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [111 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libsymspg2 arm64 2.4.0-1 [191 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.4.0-0.1 [267 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.5.1+git230720-4 [307 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [110 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.4.0-0.1 [122 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libxslt1.1 arm64 1.1.35-1+b1 [221 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-1+b1 [49.0 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.0-1 [45.5 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 python3-pyproject-hooks all 1.0.0-2 [10.6 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 python3-toml all 0.10.2-1 [16.2 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 python3-wheel all 0.43.0-1 [52.5 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 python3-build all 1.2.1-1 [34.1 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 pybuild-plugin-pyproject all 6.20240422 [11.1 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 python-babel-localedata all 2.14.0-1 [5701 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 python-matplotlib-data all 3.6.3-2 [2744 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 python3-alabaster all 0.7.12-1 [20.8 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.3-1 [659 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.11.8-1 [1056 B] Get: 124 http://deb.debian.org/debian unstable/main arm64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 python3-attr all 23.2.0-2 [65.5 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 python3-tz all 2024.1-2 [30.9 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 python3-babel all 2.14.0-1 [111 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 python3-brotli arm64 1.1.0-2+b3 [316 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 python3-certifi all 2023.11.17-1 [155 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:1.26.4+ds-8 [4219 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 python3-contourpy arm64 1.0.7-3 [247 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 python3-cycler all 0.12.1-1 [9496 B] Get: 135 http://deb.debian.org/debian unstable/main arm64 python3-six all 1.16.0-6 [16.3 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 python3-dateutil all 2.9.0-2 [79.4 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 python3-roman all 3.3-3 [9880 B] Get: 139 http://deb.debian.org/debian unstable/main arm64 python3-docutils all 0.20.1+dfsg-3 [389 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 python3-fastjsonschema all 2.19.1-1 [21.3 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 python3-scipy arm64 1.11.4-8 [17.5 MB] Get: 142 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.10.0-1 [66.2 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 python3-sympy all 1.12-7 [3869 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 python3-fs all 2.4.16-4 [95.4 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 python3-lxml arm64 5.2.1-1 [1767 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 python3-lz4 arm64 4.0.2+dfsg-1+b3 [26.6 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 unicode-data all 15.1.0-1 [8547 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 python3-fonttools arm64 4.46.0-1 [1510 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 python3-pathspec all 0.12.1-1 [28.1 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 python3-trove-classifiers all 2024.1.31-1 [9968 B] Get: 154 http://deb.debian.org/debian unstable/main arm64 python3-hatchling all 1.24.2-1 [53.2 kB] Get: 155 http://deb.debian.org/debian unstable/main arm64 python3-setuptools-scm all 8.0.4-2 [39.5 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 python3-hatch-vcs all 0.4.0-1 [8336 B] Get: 157 http://deb.debian.org/debian unstable/main arm64 python3-idna all 3.6-2 [37.0 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 python3-imagesize all 1.4.1-1 [6688 B] Get: 159 http://deb.debian.org/debian unstable/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 160 http://deb.debian.org/debian unstable/main arm64 python3-markupsafe arm64 2.1.5-1 [14.6 kB] Get: 161 http://deb.debian.org/debian unstable/main arm64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 162 http://deb.debian.org/debian unstable/main arm64 python3-joblib all 1.3.2-2 [218 kB] Get: 163 http://deb.debian.org/debian unstable/main arm64 python3-rpds-py arm64 0.12.0-3 [241 kB] Get: 164 http://deb.debian.org/debian unstable/main arm64 python3-referencing all 0.31.0-1 [22.2 kB] Get: 165 http://deb.debian.org/debian unstable/main arm64 python3-jsonschema-specifications all 2023.12.1-1 [8976 B] Get: 166 http://deb.debian.org/debian unstable/main arm64 python3-jsonschema all 4.19.2-2 [71.2 kB] Get: 167 http://deb.debian.org/debian unstable/main arm64 python3-platformdirs all 4.2.1-1 [16.0 kB] Get: 168 http://deb.debian.org/debian unstable/main arm64 python3-traitlets all 5.14.3-1 [70.7 kB] Get: 169 http://deb.debian.org/debian unstable/main arm64 python3-jupyter-core all 5.3.2-1 [31.5 kB] Get: 170 http://deb.debian.org/debian unstable/main arm64 python3-kiwisolver arm64 1.4.5-1 [75.0 kB] Get: 171 http://deb.debian.org/debian unstable/main arm64 python3-latexcodec all 3.0.0-1 [17.5 kB] Get: 172 http://deb.debian.org/debian unstable/main arm64 python3-mdurl all 0.1.2-1 [9444 B] Get: 173 http://deb.debian.org/debian unstable/main arm64 python3-markdown-it all 3.0.0-2 [62.5 kB] Get: 174 http://deb.debian.org/debian unstable/main arm64 python3-pil arm64 10.3.0-2 [552 kB] Get: 175 http://deb.debian.org/debian unstable/main arm64 python3-tk arm64 3.12.3-1 [110 kB] Get: 176 http://deb.debian.org/debian unstable/main arm64 python3-pil.imagetk arm64 10.3.0-2 [80.0 kB] Get: 177 http://deb.debian.org/debian unstable/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 178 http://deb.debian.org/debian unstable/main arm64 python3-matplotlib arm64 3.6.3-2 [7978 kB] Get: 179 http://deb.debian.org/debian unstable/main arm64 python3-mdit-py-plugins all 0.4.0-1 [33.0 kB] Get: 180 http://deb.debian.org/debian unstable/main arm64 python3-pydantic arm64 1.10.14-1 [2709 kB] Get: 181 http://deb.debian.org/debian unstable/main arm64 python3-monty all 2024.4.17-1 [40.6 kB] Get: 182 http://deb.debian.org/debian unstable/main arm64 sphinx-common all 7.2.6-7 [702 kB] Get: 183 http://deb.debian.org/debian unstable/main arm64 python3-pygments all 2.17.2+dfsg-1 [818 kB] Get: 184 http://deb.debian.org/debian unstable/main arm64 python3-urllib3 all 1.26.18-2 [116 kB] Get: 185 http://deb.debian.org/debian unstable/main arm64 python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get: 186 http://deb.debian.org/debian unstable/main arm64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 187 http://deb.debian.org/debian unstable/main arm64 python3-sphinx all 7.2.6-7 [552 kB] Get: 188 http://deb.debian.org/debian unstable/main arm64 python3-yaml arm64 6.0.1-2 [153 kB] Get: 189 http://deb.debian.org/debian unstable/main arm64 python3-myst-parser all 3.0.1-1 [77.5 kB] Get: 190 http://deb.debian.org/debian unstable/main arm64 python3-nbformat all 5.9.1-1 [45.1 kB] Get: 191 http://deb.debian.org/debian unstable/main arm64 python3-networkx all 3.2.1-4 [14.2 MB] Get: 192 http://deb.debian.org/debian unstable/main arm64 python3-palettable all 3.3.3-1 [69.7 kB] Get: 193 http://deb.debian.org/debian unstable/main arm64 python3-pandas-lib arm64 2.1.4+dfsg-8 [6609 kB] Get: 194 http://deb.debian.org/debian unstable/main arm64 python3-pandas all 2.1.4+dfsg-8 [3015 kB] Get: 195 http://deb.debian.org/debian unstable/main arm64 python3-tenacity all 8.2.3-2 [43.8 kB] Get: 196 http://deb.debian.org/debian unstable/main arm64 python3-plotly all 5.20.0+dfsg-1 [2726 kB] Get: 197 http://deb.debian.org/debian unstable/main arm64 python3-psutil arm64 5.9.8-2 [225 kB] Get: 198 http://deb.debian.org/debian unstable/main arm64 python3-pybtex all 0.24.0-4 [74.6 kB] Get: 199 http://deb.debian.org/debian unstable/main arm64 python3-spglib arm64 2.4.0-1 [51.5 kB] Get: 200 http://deb.debian.org/debian unstable/main arm64 python3-ruamel.yaml.clib arm64 0.2.8+ds-1 [156 kB] Get: 201 http://deb.debian.org/debian unstable/main arm64 python3-ruamel.yaml all 0.18.6+ds-3 [145 kB] Get: 202 http://deb.debian.org/debian unstable/main arm64 python3-tabulate all 0.8.10-1 [38.8 kB] Get: 203 http://deb.debian.org/debian unstable/main arm64 python3-tqdm all 4.66.4-1 [90.8 kB] Get: 204 http://deb.debian.org/debian unstable/main arm64 python3-uncertainties all 3.1.7-2 [77.7 kB] Get: 205 http://deb.debian.org/debian unstable/main arm64 python3-pymatgen arm64 2024.1.27+dfsg1-7 [2488 kB] Get: 206 http://deb.debian.org/debian unstable/main arm64 python3-pytest all 8.1.2-1 [246 kB] Fetched 144 MB in 1s (244 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19745 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.9-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.2-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_arm64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:arm64 (3.11.9-1) ... Setting up libexpat1:arm64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20061 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_arm64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../5-libreadline8t64_8.2-4_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_arm64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21053 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_arm64.deb ... Unpacking python3 (3.11.8-1) ... 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Setting up libqhull-r8.0:arm64 (2020.2-6+b1) ... Setting up file (1:5.45-3) ... Setting up libjbig0:arm64 (2.1-6.1+b1) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up python-babel-localedata (2.14.0-1) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Jun 17 01:41:44 UTC 2025. Universal Time is now: Tue Jun 17 01:41:44 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up libsymspg2:arm64 (2.4.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:arm64 (2.80.2-1) ... No schema files found: doing nothing. Setting up libblas3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libjpeg62-turbo:arm64 (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libfribidi0:arm64 (1.0.13-3+b1) ... 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Setting up libwebpmux3:arm64 (1.4.0-0.1) ... Setting up libbsd0:arm64 (0.12.2-1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.3-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3+b1) ... Setting up liblapack3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.17.0-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:arm64 (1.4.0-0.1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:arm64 (2.13.2+dfsg-1+b4) ... Setting up libjs-sphinxdoc (7.2.6-7) ... Setting up libreadline8t64:arm64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:arm64 (1.1.35-1+b1) ... Setting up libx11-6:arm64 (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:arm64 (8.3.0-2+b1) ... Setting up libfontconfig1:arm64 (2.15.0-1.1) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1+b1) ... Setting up libpython3.12-stdlib:arm64 (3.12.3-1) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.9-1) ... Setting up python3.12 (3.12.3-1) ... Setting up libxext6:arm64 (2:1.3.4-1+b1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libraqm0:arm64 (0.10.1-1+b1) ... Setting up sphinx-common (7.2.6-7) ... Setting up libxss1:arm64 (1:1.2.3-1+b1) ... Setting up libpython3-stdlib:arm64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up libxft2:arm64 (2.3.6-1+b1) ... Setting up libtk8.6:arm64 (8.6.14-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up python3-markupsafe (2.1.5-1) ... Setting up python3-wheel (0.43.0-1) ... Setting up python3-platformdirs (4.2.1-1) ... Setting up python3-psutil (5.9.8-2) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-pil:arm64 (10.3.0-2) ... Setting up python3-roman (3.3-3) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.0-1) ... Setting up python3-pyproject-hooks (1.0.0-2) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2023.11.17-1) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up python3-brotli (1.1.0-2+b3) ... Setting up python3-mdurl (0.1.2-1) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.5-1) ... Setting up python3-idna (3.6-2) ... Setting up python3-typing-extensions (4.10.0-1) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-markdown-it (3.0.0-2) ... Setting up python3-rpds-py (0.12.0-3) ... Setting up python3-fastjsonschema (2.19.1-1) ... Setting up python3-trove-classifiers (2024.1.31-1) ... Setting up python3-lxml:arm64 (5.2.1-1) ... Setting up python3-traitlets (5.14.3-1) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-build (1.2.1-1) ... Setting up python3-pathspec (0.12.1-1) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-1) ... python3.12: can't get files for byte-compilation Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.12-7) ... Setting up python3-attr (23.2.0-2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-joblib (1.3.2-2) ... Setting up python3-babel (2.14.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-lz4 (4.0.2+dfsg-1+b3) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-pytest (8.1.2-1) ... Setting up python3-alabaster (0.7.12-1) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3-tenacity (8.2.3-2) ... Setting up python3-tqdm (4.66.4-1) ... Setting up python3-ruamel.yaml.clib:arm64 (0.2.8+ds-1) ... Setting up python3-mdit-py-plugins (0.4.0-1) ... Setting up python3-tabulate (0.8.10-1) ... Setting up python3-latexcodec (3.0.0-1) ... Setting up python3-all (3.11.8-1) ... Setting up python3-yaml (6.0.1-2) ... Setting up python3-tk:arm64 (3.12.3-1) ... Setting up python3-networkx (3.2.1-4) ... Setting up python3-setuptools-scm (8.0.4-2) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-palettable (3.3.3-1) ... Setting up python3-pygments (2.17.2+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-pil.imagetk:arm64 (10.3.0-2) ... Setting up python3-pydantic (1.10.14-1) ... Setting up python3-requests (2.31.0+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-8) ... Setting up python3-pybtex (0.24.0-4) ... Setting up python3-ruamel.yaml (0.18.6+ds-3) ... Setting up python3-monty (2024.4.17-1) ... Setting up python3-contourpy (1.0.7-3) ... Setting up python3-hatchling (1.24.2-1) ... Setting up python3-spglib (2.4.0-1) ... Setting up python3-jupyter-core (5.3.2-1) ... Setting up python3-hatch-vcs (0.4.0-1) ... Setting up python3-referencing (0.31.0-1) ... Setting up python3-uncertainties (3.1.7-2) ... /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1707: SyntaxWarning: invalid escape sequence '\p' 'fL': '1234.57 \pm 0.10', /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1708: SyntaxWarning: invalid escape sequence '\p' 'FL': '1234.57 \pm 0.10', /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1709: SyntaxWarning: invalid escape sequence '\p' 'fL': '1234.57 \pm 0.10', /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1710: SyntaxWarning: invalid escape sequence '\p' 'FL': '1234.57 \pm 0.10', /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1750: SyntaxWarning: invalid escape sequence '\m' 'PSL': u'-1.2(\mathrm{nan})×10⁻¹²', /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1829: SyntaxWarning: invalid escape sequence '\p' 'fL': '1234.567890 \pm 0', /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1830: SyntaxWarning: invalid escape sequence '\p' 'FL': '1234.567890 \pm 0', /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1995: SyntaxWarning: invalid escape sequence '\i' 'LS': '-\infty(\infty)', /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1996: SyntaxWarning: invalid escape sequence '\i' 'L': '-\infty \pm \infty', /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1997: SyntaxWarning: invalid escape sequence '\i' 'LP': u'-\infty±\infty', /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:2021: SyntaxWarning: invalid escape sequence '\m' 'LS': '\mathrm{nan}(\infty)', /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:2022: SyntaxWarning: invalid escape sequence '\m' 'L': '\mathrm{nan} \pm \infty', /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:2023: SyntaxWarning: invalid escape sequence '\m' 'LP': u'\mathrm{nan}±\infty' Setting up dh-python (6.20240422) ... Setting up python3-scipy (1.11.4-8) ... Setting up pybuild-plugin-pyproject (6.20240422) ... Setting up python3-pandas-lib:arm64 (2.1.4+dfsg-8) ... Setting up python3-pandas (2.1.4+dfsg-8) ... Setting up python3-jsonschema-specifications (2023.12.1-1) ... Setting up python3-jsonschema (4.19.2-2) ... Setting up python3-nbformat (5.9.1-1) ... Setting up python3-plotly (5.20.0+dfsg-1) ... Setting up python3-fonttools (4.46.0-1) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-2) ... Setting up python3-pymatgen (2024.1.27+dfsg1-7) ... /usr/lib/python3/dist-packages/pymatgen/io/lammps/outputs.py:113: SyntaxWarning: invalid escape sequence '\+' pattern = file_pattern.replace("+","\+").replace("*", "([0-9]+)").replace("\\", "\\\\") Processing triggers for libc-bin (2.38-11) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.20.1+dfsg-3) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.20.1+dfsg-3) ... Setting up python3-sphinx (7.2.6-7) ... Setting up python3-myst-parser (3.0.1-1) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/custodian-2024.1.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../custodian_2024.1.9-3_source.changes dpkg-buildpackage: info: source package custodian dpkg-buildpackage: info: source version 2024.1.9-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from custodian-2024.1.9/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/custodian-2024.1.9' dh_clean --exclude=tests/files make[1]: Leaving directory '/build/reproducible-path/custodian-2024.1.9' debian/rules binary dh binary --with sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/custodian-2024.1.9/.pybuild/cpython3_3.12_custodian * Building wheel... WARNING setuptools_scm._integration.setuptools pyproject.toml does not contain a tool.setuptools_scm section running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/custodian copying custodian/__init__.py -> build/lib/custodian copying custodian/utils.py -> build/lib/custodian copying custodian/custodian.py -> build/lib/custodian creating build/lib/custodian/vasp copying custodian/vasp/validators.py -> build/lib/custodian/vasp copying custodian/vasp/jobs.py -> build/lib/custodian/vasp copying custodian/vasp/io.py -> build/lib/custodian/vasp copying custodian/vasp/interpreter.py -> build/lib/custodian/vasp copying custodian/vasp/handlers.py -> build/lib/custodian/vasp copying custodian/vasp/__init__.py -> build/lib/custodian/vasp creating build/lib/custodian/qchem copying custodian/qchem/utils.py -> build/lib/custodian/qchem copying custodian/qchem/jobs.py -> build/lib/custodian/qchem copying custodian/qchem/handlers.py -> build/lib/custodian/qchem copying custodian/qchem/__init__.py -> build/lib/custodian/qchem creating build/lib/custodian/nwchem copying custodian/nwchem/jobs.py -> build/lib/custodian/nwchem copying custodian/nwchem/handlers.py -> build/lib/custodian/nwchem copying custodian/nwchem/__init__.py -> build/lib/custodian/nwchem creating build/lib/custodian/lobster copying custodian/lobster/jobs.py -> build/lib/custodian/lobster copying custodian/lobster/handlers.py -> build/lib/custodian/lobster copying custodian/lobster/__init__.py -> build/lib/custodian/lobster creating build/lib/custodian/feff copying custodian/feff/jobs.py -> build/lib/custodian/feff copying custodian/feff/interpreter.py -> build/lib/custodian/feff copying custodian/feff/handlers.py -> build/lib/custodian/feff copying custodian/feff/__init__.py -> build/lib/custodian/feff creating build/lib/custodian/cp2k copying custodian/cp2k/validators.py -> build/lib/custodian/cp2k copying custodian/cp2k/utils.py -> build/lib/custodian/cp2k copying custodian/cp2k/jobs.py -> build/lib/custodian/cp2k copying custodian/cp2k/interpreter.py -> build/lib/custodian/cp2k copying custodian/cp2k/handlers.py -> build/lib/custodian/cp2k copying custodian/cp2k/__init__.py -> build/lib/custodian/cp2k creating build/lib/custodian/cli copying custodian/cli/run_vasp.py -> build/lib/custodian/cli copying custodian/cli/run_nwchem.py -> build/lib/custodian/cli copying custodian/cli/cstdn.py -> build/lib/custodian/cli copying custodian/cli/converge_kpoints.py -> build/lib/custodian/cli copying custodian/cli/converge_geometry.py -> build/lib/custodian/cli copying custodian/cli/__init__.py -> build/lib/custodian/cli creating build/lib/custodian/ansible copying custodian/ansible/interpreter.py -> build/lib/custodian/ansible copying custodian/ansible/actions.py -> build/lib/custodian/ansible copying custodian/ansible/__init__.py -> build/lib/custodian/ansible running egg_info creating custodian.egg-info writing custodian.egg-info/PKG-INFO writing dependency_links to custodian.egg-info/dependency_links.txt writing entry points to custodian.egg-info/entry_points.txt writing requirements to custodian.egg-info/requires.txt writing top-level names to custodian.egg-info/top_level.txt writing manifest file 'custodian.egg-info/SOURCES.txt' reading manifest file 'custodian.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'custodian.egg-info/SOURCES.txt' installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64 creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/custodian creating build/bdist.linux-aarch64/wheel/custodian/ansible copying build/lib/custodian/ansible/__init__.py -> build/bdist.linux-aarch64/wheel/custodian/ansible copying build/lib/custodian/ansible/actions.py -> build/bdist.linux-aarch64/wheel/custodian/ansible copying build/lib/custodian/ansible/interpreter.py -> build/bdist.linux-aarch64/wheel/custodian/ansible creating build/bdist.linux-aarch64/wheel/custodian/cli copying build/lib/custodian/cli/__init__.py -> build/bdist.linux-aarch64/wheel/custodian/cli copying build/lib/custodian/cli/converge_geometry.py -> build/bdist.linux-aarch64/wheel/custodian/cli copying build/lib/custodian/cli/converge_kpoints.py -> build/bdist.linux-aarch64/wheel/custodian/cli copying build/lib/custodian/cli/cstdn.py -> build/bdist.linux-aarch64/wheel/custodian/cli copying build/lib/custodian/cli/run_nwchem.py -> build/bdist.linux-aarch64/wheel/custodian/cli copying build/lib/custodian/cli/run_vasp.py -> build/bdist.linux-aarch64/wheel/custodian/cli creating build/bdist.linux-aarch64/wheel/custodian/cp2k copying build/lib/custodian/cp2k/__init__.py -> build/bdist.linux-aarch64/wheel/custodian/cp2k copying build/lib/custodian/cp2k/handlers.py -> build/bdist.linux-aarch64/wheel/custodian/cp2k copying build/lib/custodian/cp2k/interpreter.py -> build/bdist.linux-aarch64/wheel/custodian/cp2k copying build/lib/custodian/cp2k/jobs.py -> build/bdist.linux-aarch64/wheel/custodian/cp2k copying build/lib/custodian/cp2k/utils.py -> build/bdist.linux-aarch64/wheel/custodian/cp2k copying build/lib/custodian/cp2k/validators.py -> build/bdist.linux-aarch64/wheel/custodian/cp2k creating build/bdist.linux-aarch64/wheel/custodian/feff copying build/lib/custodian/feff/__init__.py -> build/bdist.linux-aarch64/wheel/custodian/feff copying build/lib/custodian/feff/handlers.py -> build/bdist.linux-aarch64/wheel/custodian/feff copying build/lib/custodian/feff/interpreter.py -> build/bdist.linux-aarch64/wheel/custodian/feff copying build/lib/custodian/feff/jobs.py -> build/bdist.linux-aarch64/wheel/custodian/feff creating build/bdist.linux-aarch64/wheel/custodian/lobster copying build/lib/custodian/lobster/__init__.py -> build/bdist.linux-aarch64/wheel/custodian/lobster copying build/lib/custodian/lobster/handlers.py -> build/bdist.linux-aarch64/wheel/custodian/lobster copying build/lib/custodian/lobster/jobs.py -> build/bdist.linux-aarch64/wheel/custodian/lobster creating build/bdist.linux-aarch64/wheel/custodian/nwchem copying build/lib/custodian/nwchem/__init__.py -> build/bdist.linux-aarch64/wheel/custodian/nwchem copying build/lib/custodian/nwchem/handlers.py -> build/bdist.linux-aarch64/wheel/custodian/nwchem copying build/lib/custodian/nwchem/jobs.py -> build/bdist.linux-aarch64/wheel/custodian/nwchem creating build/bdist.linux-aarch64/wheel/custodian/qchem copying build/lib/custodian/qchem/__init__.py -> build/bdist.linux-aarch64/wheel/custodian/qchem copying build/lib/custodian/qchem/handlers.py -> build/bdist.linux-aarch64/wheel/custodian/qchem copying build/lib/custodian/qchem/jobs.py -> build/bdist.linux-aarch64/wheel/custodian/qchem copying build/lib/custodian/qchem/utils.py -> build/bdist.linux-aarch64/wheel/custodian/qchem creating build/bdist.linux-aarch64/wheel/custodian/vasp copying build/lib/custodian/vasp/__init__.py -> build/bdist.linux-aarch64/wheel/custodian/vasp copying build/lib/custodian/vasp/handlers.py -> build/bdist.linux-aarch64/wheel/custodian/vasp copying build/lib/custodian/vasp/interpreter.py -> build/bdist.linux-aarch64/wheel/custodian/vasp copying build/lib/custodian/vasp/io.py -> build/bdist.linux-aarch64/wheel/custodian/vasp copying build/lib/custodian/vasp/jobs.py -> build/bdist.linux-aarch64/wheel/custodian/vasp copying build/lib/custodian/vasp/validators.py -> build/bdist.linux-aarch64/wheel/custodian/vasp copying build/lib/custodian/custodian.py -> build/bdist.linux-aarch64/wheel/custodian copying build/lib/custodian/utils.py -> build/bdist.linux-aarch64/wheel/custodian copying build/lib/custodian/__init__.py -> build/bdist.linux-aarch64/wheel/custodian running install_egg_info Copying custodian.egg-info to build/bdist.linux-aarch64/wheel/custodian-2024.1.9.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/custodian-2024.1.9.dist-info/WHEEL creating '/build/reproducible-path/custodian-2024.1.9/.pybuild/cpython3_3.12_custodian/.tmp-omu5fvy9/custodian-2024.1.9-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'custodian/__init__.py' adding 'custodian/custodian.py' adding 'custodian/utils.py' adding 'custodian/ansible/__init__.py' adding 'custodian/ansible/actions.py' adding 'custodian/ansible/interpreter.py' adding 'custodian/cli/__init__.py' adding 'custodian/cli/converge_geometry.py' adding 'custodian/cli/converge_kpoints.py' adding 'custodian/cli/cstdn.py' adding 'custodian/cli/run_nwchem.py' adding 'custodian/cli/run_vasp.py' adding 'custodian/cp2k/__init__.py' adding 'custodian/cp2k/handlers.py' adding 'custodian/cp2k/interpreter.py' adding 'custodian/cp2k/jobs.py' adding 'custodian/cp2k/utils.py' adding 'custodian/cp2k/validators.py' adding 'custodian/feff/__init__.py' adding 'custodian/feff/handlers.py' adding 'custodian/feff/interpreter.py' adding 'custodian/feff/jobs.py' adding 'custodian/lobster/__init__.py' adding 'custodian/lobster/handlers.py' adding 'custodian/lobster/jobs.py' adding 'custodian/nwchem/__init__.py' adding 'custodian/nwchem/handlers.py' adding 'custodian/nwchem/jobs.py' adding 'custodian/qchem/__init__.py' adding 'custodian/qchem/handlers.py' adding 'custodian/qchem/jobs.py' adding 'custodian/qchem/utils.py' adding 'custodian/vasp/__init__.py' adding 'custodian/vasp/handlers.py' adding 'custodian/vasp/interpreter.py' adding 'custodian/vasp/io.py' adding 'custodian/vasp/jobs.py' adding 'custodian/vasp/validators.py' adding 'custodian-2024.1.9.dist-info/LICENSE' adding 'custodian-2024.1.9.dist-info/METADATA' adding 'custodian-2024.1.9.dist-info/WHEEL' adding 'custodian-2024.1.9.dist-info/entry_points.txt' adding 'custodian-2024.1.9.dist-info/top_level.txt' adding 'custodian-2024.1.9.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel Successfully built custodian-2024.1.9-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module I: pybuild plugin_pyproject:129: Building wheel for python3.11 with "build" module I: pybuild base:311: python3.11 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/custodian-2024.1.9/.pybuild/cpython3_3.11_custodian * Building wheel... WARNING setuptools_scm._integration.setuptools pyproject.toml does not contain a tool.setuptools_scm section running bdist_wheel running build running build_py running egg_info writing custodian.egg-info/PKG-INFO writing dependency_links to custodian.egg-info/dependency_links.txt writing entry points to custodian.egg-info/entry_points.txt writing requirements to custodian.egg-info/requires.txt writing top-level names to custodian.egg-info/top_level.txt reading manifest file 'custodian.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'custodian.egg-info/SOURCES.txt' installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/custodian creating build/bdist.linux-aarch64/wheel/custodian/ansible copying build/lib/custodian/ansible/__init__.py -> build/bdist.linux-aarch64/wheel/custodian/ansible copying build/lib/custodian/ansible/actions.py -> build/bdist.linux-aarch64/wheel/custodian/ansible copying build/lib/custodian/ansible/interpreter.py -> build/bdist.linux-aarch64/wheel/custodian/ansible creating build/bdist.linux-aarch64/wheel/custodian/cli copying build/lib/custodian/cli/__init__.py -> build/bdist.linux-aarch64/wheel/custodian/cli copying build/lib/custodian/cli/converge_geometry.py -> build/bdist.linux-aarch64/wheel/custodian/cli copying build/lib/custodian/cli/converge_kpoints.py -> build/bdist.linux-aarch64/wheel/custodian/cli copying build/lib/custodian/cli/cstdn.py -> build/bdist.linux-aarch64/wheel/custodian/cli copying build/lib/custodian/cli/run_nwchem.py -> build/bdist.linux-aarch64/wheel/custodian/cli copying build/lib/custodian/cli/run_vasp.py -> build/bdist.linux-aarch64/wheel/custodian/cli creating build/bdist.linux-aarch64/wheel/custodian/cp2k copying build/lib/custodian/cp2k/__init__.py -> build/bdist.linux-aarch64/wheel/custodian/cp2k copying build/lib/custodian/cp2k/handlers.py -> build/bdist.linux-aarch64/wheel/custodian/cp2k copying build/lib/custodian/cp2k/interpreter.py -> build/bdist.linux-aarch64/wheel/custodian/cp2k copying build/lib/custodian/cp2k/jobs.py -> build/bdist.linux-aarch64/wheel/custodian/cp2k copying build/lib/custodian/cp2k/utils.py -> build/bdist.linux-aarch64/wheel/custodian/cp2k copying build/lib/custodian/cp2k/validators.py -> build/bdist.linux-aarch64/wheel/custodian/cp2k creating build/bdist.linux-aarch64/wheel/custodian/feff copying build/lib/custodian/feff/__init__.py -> build/bdist.linux-aarch64/wheel/custodian/feff copying build/lib/custodian/feff/handlers.py -> build/bdist.linux-aarch64/wheel/custodian/feff copying build/lib/custodian/feff/interpreter.py -> build/bdist.linux-aarch64/wheel/custodian/feff copying build/lib/custodian/feff/jobs.py -> build/bdist.linux-aarch64/wheel/custodian/feff creating build/bdist.linux-aarch64/wheel/custodian/lobster copying build/lib/custodian/lobster/__init__.py -> build/bdist.linux-aarch64/wheel/custodian/lobster copying build/lib/custodian/lobster/handlers.py -> build/bdist.linux-aarch64/wheel/custodian/lobster copying build/lib/custodian/lobster/jobs.py -> build/bdist.linux-aarch64/wheel/custodian/lobster creating build/bdist.linux-aarch64/wheel/custodian/nwchem copying build/lib/custodian/nwchem/__init__.py -> build/bdist.linux-aarch64/wheel/custodian/nwchem copying build/lib/custodian/nwchem/handlers.py -> build/bdist.linux-aarch64/wheel/custodian/nwchem copying build/lib/custodian/nwchem/jobs.py -> build/bdist.linux-aarch64/wheel/custodian/nwchem creating build/bdist.linux-aarch64/wheel/custodian/qchem copying build/lib/custodian/qchem/__init__.py -> build/bdist.linux-aarch64/wheel/custodian/qchem copying build/lib/custodian/qchem/handlers.py -> build/bdist.linux-aarch64/wheel/custodian/qchem copying build/lib/custodian/qchem/jobs.py -> build/bdist.linux-aarch64/wheel/custodian/qchem copying build/lib/custodian/qchem/utils.py -> build/bdist.linux-aarch64/wheel/custodian/qchem creating build/bdist.linux-aarch64/wheel/custodian/vasp copying build/lib/custodian/vasp/__init__.py -> build/bdist.linux-aarch64/wheel/custodian/vasp copying build/lib/custodian/vasp/handlers.py -> build/bdist.linux-aarch64/wheel/custodian/vasp copying build/lib/custodian/vasp/interpreter.py -> build/bdist.linux-aarch64/wheel/custodian/vasp copying build/lib/custodian/vasp/io.py -> build/bdist.linux-aarch64/wheel/custodian/vasp copying build/lib/custodian/vasp/jobs.py -> build/bdist.linux-aarch64/wheel/custodian/vasp copying build/lib/custodian/vasp/validators.py -> build/bdist.linux-aarch64/wheel/custodian/vasp copying build/lib/custodian/custodian.py -> build/bdist.linux-aarch64/wheel/custodian copying build/lib/custodian/utils.py -> build/bdist.linux-aarch64/wheel/custodian copying build/lib/custodian/__init__.py -> build/bdist.linux-aarch64/wheel/custodian running install_egg_info Copying custodian.egg-info to build/bdist.linux-aarch64/wheel/custodian-2024.1.9.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/custodian-2024.1.9.dist-info/WHEEL creating '/build/reproducible-path/custodian-2024.1.9/.pybuild/cpython3_3.11_custodian/.tmp-sr1614z7/custodian-2024.1.9-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'custodian/__init__.py' adding 'custodian/custodian.py' adding 'custodian/utils.py' adding 'custodian/ansible/__init__.py' adding 'custodian/ansible/actions.py' adding 'custodian/ansible/interpreter.py' adding 'custodian/cli/__init__.py' adding 'custodian/cli/converge_geometry.py' adding 'custodian/cli/converge_kpoints.py' adding 'custodian/cli/cstdn.py' adding 'custodian/cli/run_nwchem.py' adding 'custodian/cli/run_vasp.py' adding 'custodian/cp2k/__init__.py' adding 'custodian/cp2k/handlers.py' adding 'custodian/cp2k/interpreter.py' adding 'custodian/cp2k/jobs.py' adding 'custodian/cp2k/utils.py' adding 'custodian/cp2k/validators.py' adding 'custodian/feff/__init__.py' adding 'custodian/feff/handlers.py' adding 'custodian/feff/interpreter.py' adding 'custodian/feff/jobs.py' adding 'custodian/lobster/__init__.py' adding 'custodian/lobster/handlers.py' adding 'custodian/lobster/jobs.py' adding 'custodian/nwchem/__init__.py' adding 'custodian/nwchem/handlers.py' adding 'custodian/nwchem/jobs.py' adding 'custodian/qchem/__init__.py' adding 'custodian/qchem/handlers.py' adding 'custodian/qchem/jobs.py' adding 'custodian/qchem/utils.py' adding 'custodian/vasp/__init__.py' adding 'custodian/vasp/handlers.py' adding 'custodian/vasp/interpreter.py' adding 'custodian/vasp/io.py' adding 'custodian/vasp/jobs.py' adding 'custodian/vasp/validators.py' adding 'custodian-2024.1.9.dist-info/LICENSE' adding 'custodian-2024.1.9.dist-info/METADATA' adding 'custodian-2024.1.9.dist-info/WHEEL' adding 'custodian-2024.1.9.dist-info/entry_points.txt' adding 'custodian-2024.1.9.dist-info/top_level.txt' adding 'custodian-2024.1.9.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel Successfully built custodian-2024.1.9-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.11 with "installer" module debian/rules execute_after_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/custodian-2024.1.9' PYTHONPATH=. python3 -m sphinx -N -bhtml \ docs/ .pybuild/docs/html # HTML generator Running Sphinx v7.2.6 making output directory... done WARNING: html_static_path entry '_static' does not exist myst v3.0.1: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions=set(), disable_syntax=[], all_links_external=False, links_external_new_tab=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=3, heading_slug_func=None, html_meta={}, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True) building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 41 source files that are out of date updating environment: [new config] 41 added, 0 changed, 0 removed reading sources... [ 2%] _themes/README reading sources... [ 5%] changelog reading sources... [ 7%] custodian reading sources... [ 10%] custodian.ansible reading sources... [ 12%] custodian.ansible.actions reading sources... [ 15%] custodian.ansible.interpreter reading sources... [ 17%] custodian.cli reading sources... [ 20%] custodian.cli.converge_geometry reading sources... [ 22%] custodian.cli.converge_kpoints reading sources... [ 24%] custodian.cli.cstdn reading sources... [ 27%] custodian.cli.run_nwchem reading sources... [ 29%] custodian.cli.run_vasp reading sources... [ 32%] custodian.cp2k reading sources... [ 34%] custodian.cp2k.handlers reading sources... [ 37%] custodian.cp2k.interpreter reading sources... [ 39%] custodian.cp2k.jobs reading sources... [ 41%] custodian.cp2k.utils reading sources... [ 44%] custodian.cp2k.validators reading sources... [ 46%] custodian.custodian reading sources... [ 49%] custodian.feff reading sources... [ 51%] custodian.feff.handlers reading sources... 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'custodian.ansible.interpreter': 'custodian.ansible.interpreter.Modder.modify' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:42: WARNING: local id not found in doc 'custodian.ansible.interpreter': 'custodian.ansible.interpreter.Modder.modify_object' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:103: WARNING: 'myst' cross-reference target not found: '' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:112: WARNING: local id not found in doc 'custodian.cp2k.interpreter': 'custodian.cp2k.interpreter.Cp2kModder' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:113: WARNING: local id not found in doc 'custodian.cp2k.interpreter': 'custodian.cp2k.interpreter.Cp2kModder.apply_actions' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:115: WARNING: local id not found in doc 'custodian.cp2k.jobs': 'custodian.cp2k.jobs.Cp2kJob' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:116: WARNING: local id not found in doc 'custodian.cp2k.jobs': 'custodian.cp2k.jobs.Cp2kJob.double_job' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:117: WARNING: local id not found in doc 'custodian.cp2k.jobs': 'custodian.cp2k.jobs.Cp2kJob.gga_static_to_hybrid' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:118: WARNING: local id not found in doc 'custodian.cp2k.jobs': 'custodian.cp2k.jobs.Cp2kJob.postprocess' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:119: WARNING: local id not found in doc 'custodian.cp2k.jobs': 'custodian.cp2k.jobs.Cp2kJob.pre_screen_hybrid' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:120: WARNING: local id not found in doc 'custodian.cp2k.jobs': 'custodian.cp2k.jobs.Cp2kJob.run' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:121: WARNING: local id not found in doc 'custodian.cp2k.jobs': 'custodian.cp2k.jobs.Cp2kJob.setup' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:122: WARNING: local id not found in doc 'custodian.cp2k.jobs': 'custodian.cp2k.jobs.Cp2kJob.terminate' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:124: WARNING: local id not found in doc 'custodian.cp2k.utils': 'custodian.cp2k.utils.activate_diag' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:125: WARNING: local id not found in doc 'custodian.cp2k.utils': 'custodian.cp2k.utils.activate_ot' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:126: WARNING: local id not found in doc 'custodian.cp2k.utils': 'custodian.cp2k.utils.can_use_ot' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:127: WARNING: local id not found in doc 'custodian.cp2k.utils': 'custodian.cp2k.utils.cleanup_input' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:128: WARNING: local id not found in doc 'custodian.cp2k.utils': 'custodian.cp2k.utils.get_conv' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:129: WARNING: local id not found in doc 'custodian.cp2k.utils': 'custodian.cp2k.utils.restart' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:130: WARNING: local id not found in doc 'custodian.cp2k.utils': 'custodian.cp2k.utils.tail' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:132: WARNING: local id not found in doc 'custodian.cp2k.validators': 'custodian.cp2k.validators.Cp2kOutputValidator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:133: WARNING: local id not found in doc 'custodian.cp2k.validators': 'custodian.cp2k.validators.Cp2kOutputValidator.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:134: WARNING: local id not found in doc 'custodian.cp2k.validators': 'custodian.cp2k.validators.Cp2kOutputValidator.exit' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:135: WARNING: local id not found in doc 'custodian.cp2k.validators': 'custodian.cp2k.validators.Cp2kOutputValidator.kill' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:136: WARNING: local id not found in doc 'custodian.cp2k.validators': 'custodian.cp2k.validators.Cp2kOutputValidator.no_children' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:137: WARNING: local id not found in doc 'custodian.cp2k.validators': 'custodian.cp2k.validators.Cp2kValidator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:138: WARNING: local id not found in doc 'custodian.cp2k.validators': 'custodian.cp2k.validators.Cp2kValidator.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:139: WARNING: local id not found in doc 'custodian.cp2k.validators': 'custodian.cp2k.validators.Cp2kValidator.exit' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:140: WARNING: local id not found in doc 'custodian.cp2k.validators': 'custodian.cp2k.validators.Cp2kValidator.kill' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:141: WARNING: local id not found in doc 'custodian.cp2k.validators': 'custodian.cp2k.validators.Cp2kValidator.no_children' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:144: WARNING: 'myst' cross-reference target not found: '' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:152: WARNING: local id not found in doc 'custodian.feff.handlers': 'custodian.feff.handlers.UnconvergedErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:153: WARNING: local id not found in doc 'custodian.feff.handlers': 'custodian.feff.handlers.UnconvergedErrorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:154: WARNING: local id not found in doc 'custodian.feff.handlers': 'custodian.feff.handlers.UnconvergedErrorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:155: WARNING: local id not found in doc 'custodian.feff.handlers': 'custodian.feff.handlers.UnconvergedErrorHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:157: WARNING: local id not found in doc 'custodian.feff.interpreter': 'custodian.feff.interpreter.FeffModder' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:158: WARNING: local id not found in doc 'custodian.feff.interpreter': 'custodian.feff.interpreter.FeffModder.apply_actions' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:160: WARNING: local id not found in doc 'custodian.feff.jobs': 'custodian.feff.jobs.FeffJob' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:161: WARNING: local id not found in doc 'custodian.feff.jobs': 'custodian.feff.jobs.FeffJob.postprocess' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:162: WARNING: local id not found in doc 'custodian.feff.jobs': 'custodian.feff.jobs.FeffJob.run' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:163: WARNING: local id not found in doc 'custodian.feff.jobs': 'custodian.feff.jobs.FeffJob.setup' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:166: WARNING: 'myst' cross-reference target not found: '' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:174: WARNING: local id not found in doc 'custodian.lobster.handlers': 'custodian.lobster.handlers.ChargeSpillingValidator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:175: WARNING: local id not found in doc 'custodian.lobster.handlers': 'custodian.lobster.handlers.ChargeSpillingValidator.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:176: WARNING: local id not found in doc 'custodian.lobster.handlers': 'custodian.lobster.handlers.EnoughBandsValidator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:177: WARNING: local id not found in doc 'custodian.lobster.handlers': 'custodian.lobster.handlers.EnoughBandsValidator.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:178: WARNING: local id not found in doc 'custodian.lobster.handlers': 'custodian.lobster.handlers.LobsterFilesValidator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:179: WARNING: local id not found in doc 'custodian.lobster.handlers': 'custodian.lobster.handlers.LobsterFilesValidator.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:181: WARNING: local id not found in doc 'custodian.lobster.jobs': 'custodian.lobster.jobs.LobsterJob' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:182: WARNING: local id not found in doc 'custodian.lobster.jobs': 'custodian.lobster.jobs.LobsterJob.postprocess' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:183: WARNING: local id not found in doc 'custodian.lobster.jobs': 'custodian.lobster.jobs.LobsterJob.run' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:184: WARNING: local id not found in doc 'custodian.lobster.jobs': 'custodian.lobster.jobs.LobsterJob.setup' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:187: WARNING: 'myst' cross-reference target not found: '' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:192: WARNING: local id not found in doc 'custodian.nwchem.handlers': 'custodian.nwchem.handlers.NwchemErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:193: WARNING: local id not found in doc 'custodian.nwchem.handlers': 'custodian.nwchem.handlers.NwchemErrorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:194: WARNING: local id not found in doc 'custodian.nwchem.handlers': 'custodian.nwchem.handlers.NwchemErrorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:196: WARNING: local id not found in doc 'custodian.nwchem.jobs': 'custodian.nwchem.jobs.NwchemJob' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:197: WARNING: local id not found in doc 'custodian.nwchem.jobs': 'custodian.nwchem.jobs.NwchemJob.postprocess' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:198: WARNING: local id not found in doc 'custodian.nwchem.jobs': 'custodian.nwchem.jobs.NwchemJob.run' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:199: WARNING: local id not found in doc 'custodian.nwchem.jobs': 'custodian.nwchem.jobs.NwchemJob.setup' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:202: WARNING: 'myst' cross-reference target not found: '' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:215: WARNING: local id not found in doc 'custodian.qchem.utils': 'custodian.qchem.utils.perturb_coordinates' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:216: WARNING: local id not found in doc 'custodian.qchem.utils': 'custodian.qchem.utils.vector_list_diff' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:219: WARNING: 'myst' cross-reference target not found: '' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:233: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.AliasingErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:234: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.AliasingErrorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:235: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.AliasingErrorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:236: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.AliasingErrorHandler.error_msgs' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:237: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.AliasingErrorHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:238: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.CheckpointHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:239: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.CheckpointHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:240: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.CheckpointHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:241: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.CheckpointHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:242: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.CheckpointHandler.is_terminating' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:243: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.DriftErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:244: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.DriftErrorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:245: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.DriftErrorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:246: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.FrozenJobErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:247: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.FrozenJobErrorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:248: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.FrozenJobErrorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:249: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.FrozenJobErrorHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:250: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.IncorrectSmearingHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:251: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.IncorrectSmearingHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:252: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.IncorrectSmearingHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:253: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.IncorrectSmearingHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:254: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.LargeSigmaHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:255: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.LargeSigmaHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:256: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.LargeSigmaHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:257: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.LargeSigmaHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:258: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.LrfCommutatorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:259: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.LrfCommutatorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:260: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.LrfCommutatorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:261: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.LrfCommutatorHandler.error_msgs' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:262: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.LrfCommutatorHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:263: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.MeshSymmetryErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:264: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.MeshSymmetryErrorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:265: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.MeshSymmetryErrorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:266: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.MeshSymmetryErrorHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:267: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.NonConvergingErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:268: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.NonConvergingErrorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:269: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.NonConvergingErrorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:270: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.NonConvergingErrorHandler.from_dict' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:271: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.NonConvergingErrorHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:272: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.PositiveEnergyErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:273: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.PositiveEnergyErrorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:274: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.PositiveEnergyErrorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:275: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.PositiveEnergyErrorHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:276: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.PotimErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:277: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.PotimErrorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:278: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.PotimErrorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:279: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.PotimErrorHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:280: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.ScanMetalHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:281: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.ScanMetalHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:282: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.ScanMetalHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:283: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.ScanMetalHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:284: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.StdErrHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:285: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.StdErrHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:286: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.StdErrHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:287: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.StdErrHandler.error_msgs' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:288: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.StdErrHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:289: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.StoppedRunHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:290: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.StoppedRunHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:291: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.StoppedRunHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:292: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.StoppedRunHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:293: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.StoppedRunHandler.is_terminating' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:294: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.UnconvergedErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:295: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.UnconvergedErrorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:296: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.UnconvergedErrorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:297: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.UnconvergedErrorHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:298: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.VaspErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:299: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.VaspErrorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:300: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.VaspErrorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:301: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.VaspErrorHandler.error_msgs' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:302: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.VaspErrorHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:303: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.WalltimeHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:304: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.WalltimeHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:305: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.WalltimeHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:306: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.WalltimeHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:307: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.WalltimeHandler.is_terminating' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:308: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.WalltimeHandler.raises_runtime_error' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:310: WARNING: local id not found in doc 'custodian.vasp.interpreter': 'custodian.vasp.interpreter.VaspModder' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:311: WARNING: local id not found in doc 'custodian.vasp.interpreter': 'custodian.vasp.interpreter.VaspModder.apply_actions' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:313: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.GenerateVaspInputJob' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:314: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.GenerateVaspInputJob.postprocess' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:315: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.GenerateVaspInputJob.run' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:316: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.GenerateVaspInputJob.setup' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:317: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspJob' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:318: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspJob.constrained_opt_run' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:319: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspJob.double_relaxation_run' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:320: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspJob.full_opt_run' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:321: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspJob.metagga_opt_run' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:322: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspJob.postprocess' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:323: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspJob.run' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:324: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspJob.setup' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:325: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspJob.terminate' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:326: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspNEBJob' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:327: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspNEBJob.postprocess' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:328: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspNEBJob.run' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:329: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspNEBJob.setup' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:331: WARNING: local id not found in doc 'custodian.vasp.validators': 'custodian.vasp.validators.VaspAECCARValidator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:332: WARNING: local id not found in doc 'custodian.vasp.validators': 'custodian.vasp.validators.VaspAECCARValidator.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:333: WARNING: local id not found in doc 'custodian.vasp.validators': 'custodian.vasp.validators.VaspFilesValidator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:334: WARNING: local id not found in doc 'custodian.vasp.validators': 'custodian.vasp.validators.VaspFilesValidator.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:335: WARNING: local id not found in doc 'custodian.vasp.validators': 'custodian.vasp.validators.VaspNpTMDValidator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:336: WARNING: local id not found in doc 'custodian.vasp.validators': 'custodian.vasp.validators.VaspNpTMDValidator.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:337: WARNING: local id not found in doc 'custodian.vasp.validators': 'custodian.vasp.validators.VasprunXMLValidator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:338: WARNING: local id not found in doc 'custodian.vasp.validators': 'custodian.vasp.validators.VasprunXMLValidator.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:339: WARNING: local id not found in doc 'custodian.vasp.validators': 'custodian.vasp.validators.check_broken_chgcar' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:341: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.Custodian' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:342: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.Custodian.LOG_FILE' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:343: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.Custodian.from_spec' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:344: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.Custodian.run' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:345: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.Custodian.run_interrupted' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:346: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.CustodianError' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:347: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:348: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:349: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:350: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:351: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler.is_terminating' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:352: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler.max_num_corrections' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:353: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler.n_applied_corrections' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.md:354: WARNING: local id not found in 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[myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.ansible.md:28: WARNING: local id not found in doc 'custodian.ansible.actions': 'custodian.ansible.actions.DictActions.pop' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.ansible.md:29: WARNING: local id not found in doc 'custodian.ansible.actions': 'custodian.ansible.actions.DictActions.pull' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.ansible.md:30: WARNING: local id not found in doc 'custodian.ansible.actions': 'custodian.ansible.actions.DictActions.pull_all' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.ansible.md:31: WARNING: local id not found in doc 'custodian.ansible.actions': 'custodian.ansible.actions.DictActions.push' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.ansible.md:32: WARNING: local id not found in doc 'custodian.ansible.actions': 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/build/reproducible-path/custodian-2024.1.9/docs/custodian.ansible.md:42: WARNING: local id not found in doc 'custodian.ansible.actions': 'custodian.ansible.actions.get_nested_dict' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.ansible.md:44: WARNING: local id not found in doc 'custodian.ansible.interpreter': 'custodian.ansible.interpreter.Modder' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.ansible.md:45: WARNING: local id not found in doc 'custodian.ansible.interpreter': 'custodian.ansible.interpreter.Modder.modify' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.ansible.md:46: WARNING: local id not found in doc 'custodian.ansible.interpreter': 'custodian.ansible.interpreter.Modder.modify_object' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.ansible.interpreter.md:39: WARNING: local id not found in doc 'custodian.ansible.actions': 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/build/reproducible-path/custodian-2024.1.9/docs/custodian.cli.md:26: WARNING: local id not found in doc 'custodian.cli.run_vasp': 'custodian.cli.run_vasp.do_run' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cli.md:27: WARNING: local id not found in doc 'custodian.cli.run_vasp': 'custodian.cli.run_vasp.get_jobs' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cli.md:28: WARNING: local id not found in doc 'custodian.cli.run_vasp': 'custodian.cli.run_vasp.load_class' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cli.md:29: WARNING: local id not found in doc 'custodian.cli.run_vasp': 'custodian.cli.run_vasp.main' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cp2k.md:13: WARNING: 'myst' cross-reference target not found: '' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cp2k.md:22: WARNING: local id not found in doc 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[myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cp2k.md:35: WARNING: local id not found in doc 'custodian.cp2k.utils': 'custodian.cp2k.utils.activate_ot' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cp2k.md:36: WARNING: local id not found in doc 'custodian.cp2k.utils': 'custodian.cp2k.utils.can_use_ot' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cp2k.md:37: WARNING: local id not found in doc 'custodian.cp2k.utils': 'custodian.cp2k.utils.cleanup_input' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cp2k.md:38: WARNING: local id not found in doc 'custodian.cp2k.utils': 'custodian.cp2k.utils.get_conv' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cp2k.md:39: WARNING: local id not found in doc 'custodian.cp2k.utils': 'custodian.cp2k.utils.restart' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cp2k.md:40: WARNING: local id not found in doc 'custodian.cp2k.utils': 'custodian.cp2k.utils.tail' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cp2k.md:42: WARNING: local id not found in doc 'custodian.cp2k.validators': 'custodian.cp2k.validators.Cp2kOutputValidator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cp2k.md:43: WARNING: local id not found in doc 'custodian.cp2k.validators': 'custodian.cp2k.validators.Cp2kOutputValidator.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cp2k.md:44: WARNING: local id not found in doc 'custodian.cp2k.validators': 'custodian.cp2k.validators.Cp2kOutputValidator.exit' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cp2k.md:45: WARNING: local id not found in doc 'custodian.cp2k.validators': 'custodian.cp2k.validators.Cp2kOutputValidator.kill' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cp2k.md:46: WARNING: local id not found in doc 'custodian.cp2k.validators': 'custodian.cp2k.validators.Cp2kOutputValidator.no_children' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cp2k.md:47: WARNING: local id not found in doc 'custodian.cp2k.validators': 'custodian.cp2k.validators.Cp2kValidator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cp2k.md:48: WARNING: local id not found in doc 'custodian.cp2k.validators': 'custodian.cp2k.validators.Cp2kValidator.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cp2k.md:49: WARNING: local id not found in doc 'custodian.cp2k.validators': 'custodian.cp2k.validators.Cp2kValidator.exit' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cp2k.md:50: WARNING: local id not found in doc 'custodian.cp2k.validators': 'custodian.cp2k.validators.Cp2kValidator.kill' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cp2k.md:51: WARNING: local id not found in doc 'custodian.cp2k.validators': 'custodian.cp2k.validators.Cp2kValidator.no_children' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cp2k.interpreter.md:13: WARNING: local id not found in doc 'custodian.ansible.interpreter': 'custodian.ansible.interpreter.Modder' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cp2k.interpreter.md:23: WARNING: local id not found in doc 'custodian.ansible.actions': 'module-custodian.ansible.actions' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cp2k.jobs.md:13: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.Job' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.cp2k.validators.md:41: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.Validator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.feff.md:13: WARNING: 'myst' cross-reference target not found: '' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.feff.md:21: WARNING: local id not found in doc 'custodian.feff.handlers': 'custodian.feff.handlers.UnconvergedErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.feff.md:22: WARNING: local id not found in doc 'custodian.feff.handlers': 'custodian.feff.handlers.UnconvergedErrorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.feff.md:23: WARNING: local id not found in doc 'custodian.feff.handlers': 'custodian.feff.handlers.UnconvergedErrorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.feff.md:24: WARNING: local id not found in doc 'custodian.feff.handlers': 'custodian.feff.handlers.UnconvergedErrorHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.feff.md:26: WARNING: local id not found in doc 'custodian.feff.interpreter': 'custodian.feff.interpreter.FeffModder' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.feff.md:27: WARNING: local id not found in doc 'custodian.feff.interpreter': 'custodian.feff.interpreter.FeffModder.apply_actions' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.feff.md:29: WARNING: local id not found in doc 'custodian.feff.jobs': 'custodian.feff.jobs.FeffJob' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.feff.md:30: WARNING: local id not found in doc 'custodian.feff.jobs': 'custodian.feff.jobs.FeffJob.postprocess' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.feff.md:31: WARNING: local id not found in doc 'custodian.feff.jobs': 'custodian.feff.jobs.FeffJob.run' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.feff.md:32: WARNING: local id not found in doc 'custodian.feff.jobs': 'custodian.feff.jobs.FeffJob.setup' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.feff.handlers.md:13: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.feff.interpreter.md:13: WARNING: local id not found in doc 'custodian.ansible.interpreter': 'custodian.ansible.interpreter.Modder' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.feff.interpreter.md:19: WARNING: local id not found in doc 'custodian.ansible.actions': 'module-custodian.ansible.actions' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.feff.jobs.md:13: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.Job' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.lobster.md:13: WARNING: 'myst' cross-reference target not found: '' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.lobster.md:21: WARNING: local id not found in doc 'custodian.lobster.handlers': 'custodian.lobster.handlers.ChargeSpillingValidator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.lobster.md:22: WARNING: local id not found in doc 'custodian.lobster.handlers': 'custodian.lobster.handlers.ChargeSpillingValidator.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.lobster.md:23: WARNING: local id not found in doc 'custodian.lobster.handlers': 'custodian.lobster.handlers.EnoughBandsValidator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.lobster.md:24: WARNING: local id not found in doc 'custodian.lobster.handlers': 'custodian.lobster.handlers.EnoughBandsValidator.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.lobster.md:25: WARNING: local id not found in doc 'custodian.lobster.handlers': 'custodian.lobster.handlers.LobsterFilesValidator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.lobster.md:26: WARNING: local id not found in doc 'custodian.lobster.handlers': 'custodian.lobster.handlers.LobsterFilesValidator.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.lobster.md:28: WARNING: local id not found in doc 'custodian.lobster.jobs': 'custodian.lobster.jobs.LobsterJob' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.lobster.md:29: WARNING: local id not found in doc 'custodian.lobster.jobs': 'custodian.lobster.jobs.LobsterJob.postprocess' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.lobster.md:30: WARNING: local id not found in doc 'custodian.lobster.jobs': 'custodian.lobster.jobs.LobsterJob.run' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.lobster.md:31: WARNING: local id not found in doc 'custodian.lobster.jobs': 'custodian.lobster.jobs.LobsterJob.setup' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.lobster.handlers.md:13: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.Validator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.lobster.handlers.md:27: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.Validator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.lobster.handlers.md:42: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.Validator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.lobster.jobs.md:13: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.Job' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.nwchem.md:13: WARNING: 'myst' cross-reference target not found: '' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.nwchem.md:18: WARNING: local id not found in doc 'custodian.nwchem.handlers': 'custodian.nwchem.handlers.NwchemErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.nwchem.md:19: WARNING: local id not found in doc 'custodian.nwchem.handlers': 'custodian.nwchem.handlers.NwchemErrorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.nwchem.md:20: WARNING: local id not found in doc 'custodian.nwchem.handlers': 'custodian.nwchem.handlers.NwchemErrorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.nwchem.md:22: WARNING: local id not found in doc 'custodian.nwchem.jobs': 'custodian.nwchem.jobs.NwchemJob' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.nwchem.md:23: WARNING: local id not found in doc 'custodian.nwchem.jobs': 'custodian.nwchem.jobs.NwchemJob.postprocess' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.nwchem.md:24: WARNING: local id not found in doc 'custodian.nwchem.jobs': 'custodian.nwchem.jobs.NwchemJob.run' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.nwchem.md:25: WARNING: local id not found in doc 'custodian.nwchem.jobs': 'custodian.nwchem.jobs.NwchemJob.setup' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.nwchem.handlers.md:14: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.nwchem.jobs.md:13: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.Job' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.qchem.md:13: WARNING: 'myst' cross-reference target not found: '' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.qchem.md:26: WARNING: local id not found in doc 'custodian.qchem.utils': 'custodian.qchem.utils.perturb_coordinates' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.qchem.md:27: WARNING: local id not found in doc 'custodian.qchem.utils': 'custodian.qchem.utils.vector_list_diff' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:13: WARNING: 'myst' cross-reference target not found: '' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:27: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.AliasingErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:28: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.AliasingErrorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:29: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.AliasingErrorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:30: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.AliasingErrorHandler.error_msgs' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:31: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.AliasingErrorHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:32: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.CheckpointHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:33: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.CheckpointHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:34: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.CheckpointHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:35: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.CheckpointHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:36: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.CheckpointHandler.is_terminating' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:37: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.DriftErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:38: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.DriftErrorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:39: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.DriftErrorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:40: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.FrozenJobErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:41: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.FrozenJobErrorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:42: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.FrozenJobErrorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:43: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.FrozenJobErrorHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:44: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.IncorrectSmearingHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:45: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.IncorrectSmearingHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:46: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.IncorrectSmearingHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:47: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.IncorrectSmearingHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:48: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.LargeSigmaHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:49: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.LargeSigmaHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:50: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.LargeSigmaHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:51: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.LargeSigmaHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:52: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.LrfCommutatorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:53: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.LrfCommutatorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:54: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.LrfCommutatorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:55: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.LrfCommutatorHandler.error_msgs' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:56: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.LrfCommutatorHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:57: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.MeshSymmetryErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:58: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.MeshSymmetryErrorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:59: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.MeshSymmetryErrorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:60: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.MeshSymmetryErrorHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:61: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.NonConvergingErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:62: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.NonConvergingErrorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:63: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.NonConvergingErrorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:64: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.NonConvergingErrorHandler.from_dict' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:65: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.NonConvergingErrorHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:66: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.PositiveEnergyErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:67: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.PositiveEnergyErrorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:68: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.PositiveEnergyErrorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:69: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.PositiveEnergyErrorHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:70: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.PotimErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:71: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.PotimErrorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:72: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.PotimErrorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:73: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.PotimErrorHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:74: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.ScanMetalHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:75: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.ScanMetalHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:76: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.ScanMetalHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:77: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.ScanMetalHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:78: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.StdErrHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:79: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.StdErrHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:80: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.StdErrHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:81: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.StdErrHandler.error_msgs' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:82: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.StdErrHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:83: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.StoppedRunHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:84: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.StoppedRunHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:85: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.StoppedRunHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:86: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.StoppedRunHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:87: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.StoppedRunHandler.is_terminating' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:88: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.UnconvergedErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:89: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.UnconvergedErrorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:90: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.UnconvergedErrorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:91: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.UnconvergedErrorHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:92: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.VaspErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:93: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.VaspErrorHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:94: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.VaspErrorHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:95: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.VaspErrorHandler.error_msgs' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:96: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.VaspErrorHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:97: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.WalltimeHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:98: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.WalltimeHandler.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:99: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.WalltimeHandler.correct' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:100: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.WalltimeHandler.is_monitor' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:101: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.WalltimeHandler.is_terminating' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:102: WARNING: local id not found in doc 'custodian.vasp.handlers': 'custodian.vasp.handlers.WalltimeHandler.raises_runtime_error' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:104: WARNING: local id not found in doc 'custodian.vasp.interpreter': 'custodian.vasp.interpreter.VaspModder' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:105: WARNING: local id not found in doc 'custodian.vasp.interpreter': 'custodian.vasp.interpreter.VaspModder.apply_actions' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:107: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.GenerateVaspInputJob' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:108: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.GenerateVaspInputJob.postprocess' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:109: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.GenerateVaspInputJob.run' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:110: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.GenerateVaspInputJob.setup' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:111: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspJob' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:112: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspJob.constrained_opt_run' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:113: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspJob.double_relaxation_run' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:114: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspJob.full_opt_run' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:115: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspJob.metagga_opt_run' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:116: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspJob.postprocess' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:117: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspJob.run' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:118: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspJob.setup' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:119: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspJob.terminate' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:120: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspNEBJob' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:121: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspNEBJob.postprocess' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:122: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspNEBJob.run' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:123: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspNEBJob.setup' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:125: WARNING: local id not found in doc 'custodian.vasp.validators': 'custodian.vasp.validators.VaspAECCARValidator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:126: WARNING: local id not found in doc 'custodian.vasp.validators': 'custodian.vasp.validators.VaspAECCARValidator.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:127: WARNING: local id not found in doc 'custodian.vasp.validators': 'custodian.vasp.validators.VaspFilesValidator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:128: WARNING: local id not found in doc 'custodian.vasp.validators': 'custodian.vasp.validators.VaspFilesValidator.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:129: WARNING: local id not found in doc 'custodian.vasp.validators': 'custodian.vasp.validators.VaspNpTMDValidator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:130: WARNING: local id not found in doc 'custodian.vasp.validators': 'custodian.vasp.validators.VaspNpTMDValidator.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:131: WARNING: local id not found in doc 'custodian.vasp.validators': 'custodian.vasp.validators.VasprunXMLValidator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:132: WARNING: local id not found in doc 'custodian.vasp.validators': 'custodian.vasp.validators.VasprunXMLValidator.check' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.md:133: WARNING: local id not found in doc 'custodian.vasp.validators': 'custodian.vasp.validators.check_broken_chgcar' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.handlers.md:15: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.handlers.md:24: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspJob' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.handlers.md:50: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.handlers.md:98: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.handlers.md:117: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.handlers.md:125: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspJob' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.handlers.md:152: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.handlers.md:185: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.handlers.md:212: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.handlers.md:222: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspJob' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.handlers.md:248: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.handlers.md:257: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspJob' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.handlers.md:283: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.handlers.md:322: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.handlers.md:353: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.handlers.md:389: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.handlers.md:422: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.handlers.md:432: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspJob' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.handlers.md:458: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.handlers.md:502: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.handlers.md:532: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.handlers.md:540: WARNING: local id not found in doc 'custodian.vasp.jobs': 'custodian.vasp.jobs.VaspJob' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.handlers.md:595: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.ErrorHandler' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.interpreter.md:13: WARNING: local id not found in doc 'custodian.ansible.interpreter': 'custodian.ansible.interpreter.Modder' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.interpreter.md:20: WARNING: local id not found in doc 'custodian.ansible.actions': 'module-custodian.ansible.actions' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.jobs.md:13: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.Job' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.jobs.md:38: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.Job' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.validators.md:13: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.Validator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.validators.md:25: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.Validator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.validators.md:41: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.Validator' [myst.xref_missing] /build/reproducible-path/custodian-2024.1.9/docs/custodian.vasp.validators.md:54: WARNING: local id not found in doc 'custodian.custodian': 'custodian.custodian.Validator' [myst.xref_missing] generating indices... genindex done writing additional pages... search done copying images... [100%] assets/custodian_logo.png dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 508 warnings. The HTML pages are in .pybuild/docs/html. make[1]: Leaving directory '/build/reproducible-path/custodian-2024.1.9' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/custodian-2024.1.9' rm -rf .pybuild/tests cp -r tests .pybuild # pymatgen is needed for tests but # spglib is only available on the default python version CUSTODIAN_TEST_DIR=/build/reproducible-path/custodian-2024.1.9/.pybuild/tests pybuild --test --test-pytest -p 3.11 \ --test-args='-k "not (test_fileman_cpscf_nseg_error or test_gdm_neg_precon_error or test_OptFF or test_first_step)"' I: pybuild base:311: cd /build/reproducible-path/custodian-2024.1.9/.pybuild/cpython3_3.11_custodian/build; python3.11 -m pytest -k "not (test_fileman_cpscf_nseg_error or test_gdm_neg_precon_error or test_OptFF or test_first_step)" ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-8.1.2, pluggy-1.5.0 rootdir: /build/reproducible-path/custodian-2024.1.9/.pybuild/cpython3_3.11_custodian/build configfile: pyproject.toml collected 167 items / 18 deselected / 1 skipped / 149 selected tests/ansible/test_interpreter.py .... [ 2%] tests/cp2k/test_handlers.py ........ [ 8%] tests/cp2k/test_jobs.py .. [ 9%] tests/feff/test_handlers.py . [ 10%] tests/feff/test_jobs.py ... [ 12%] tests/lobster/test_handlers.py .......... [ 18%] tests/lobster/test_jobs.py ... [ 20%] tests/nwchem/test_handlers.py . [ 21%] tests/qchem/test_handlers.py ssssssssssssssssss [ 33%] tests/qchem/test_jobs.py sss [ 35%] tests/test_custodian.py .......... [ 42%] tests/test_utils.py . [ 42%] tests/vasp/test_handlers.py ............................................ [ 72%] ...................... [ 87%] tests/vasp/test_io.py .. [ 88%] tests/vasp/test_jobs.py .......... [ 95%] tests/vasp/test_validators.py ....... [100%] ========== 128 passed, 22 skipped, 18 deselected in 72.74s (0:01:12) =========== make[1]: Leaving directory '/build/reproducible-path/custodian-2024.1.9' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir I: pybuild plugin_pyproject:178: Copying package built for python3.11 to destdir dh_installdocs -O--buildsystem=pybuild dh_installdocs: warning: Cannot auto-detect main package for python-custodian-doc. If the default is wrong, please use --doc-main-package debian/rules execute_after_dh_installdocs make[1]: Entering directory '/build/reproducible-path/custodian-2024.1.9' for f in `find debian/python-custodian-doc/usr/share/doc/python-custodian-doc/html -name *.html`; do \ sed "s|.google-analytics.com/ga.js|privacy/ga.js|g" -i $f; \ done make[1]: Leaving directory '/build/reproducible-path/custodian-2024.1.9' dh_sphinxdoc -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-custodian-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-custodian' in '../python3-custodian_2024.1.9-3_all.deb'. dpkg-deb: building package 'python-custodian-doc' in '../python-custodian-doc_2024.1.9-3_all.deb'. dpkg-genbuildinfo --build=binary -O../custodian_2024.1.9-3_arm64.buildinfo dpkg-genchanges --build=binary -O../custodian_2024.1.9-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from custodian-2024.1.9/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3281282 and its subdirectories I: Current time: Mon Jun 16 13:45:07 -12 2025 I: pbuilder-time-stamp: 1750124707 Tue May 14 19:22:09 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink02-arm64.debian.net. Tue May 14 19:22:09 UTC 2024 I: Preparing to do remote build '2' on codethink02-arm64.debian.net. Tue May 14 19:29:40 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. Tue May 14 19:29:40 UTC 2024 I: custodian_2024.1.9-3_arm64.changes: Format: 1.8 Date: Tue, 13 Feb 2024 13:06:55 +0100 Source: custodian Binary: python-custodian-doc python3-custodian Architecture: all Version: 2024.1.9-3 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Drew Parsons Description: python-custodian-doc - flexible just-in-time job management framework in Python (doc) python3-custodian - flexible just-in-time job management framework in Python Changes: custodian (2024.1.9-3) unstable; urgency=medium . * set Vcs-Git to the salsa repo * update debian/tests - use TMPDIR=${AUTOPKGTEST_TMP}/tmp to avoid exhausting /tmp (tests need ~10G tmpfiles) - skip QChemErrorHandlerTest since custodian is not up-to-date with latest pymatgen - run pytest on all supported python versions (spglib is now available for all versions) Checksums-Sha1: ea934ccf6f3dd1d2b69881bbaf9d029679886b78 10717 custodian_2024.1.9-3_arm64.buildinfo 020df761bfee947366ec9ee9754ef1d20d49fd4a 174332 python-custodian-doc_2024.1.9-3_all.deb f1fe1e896214d6d4e5bad1cbc011335200517556 80648 python3-custodian_2024.1.9-3_all.deb Checksums-Sha256: 6fefd67a1c1015309dbe60dbf235eb1fbb4749f51b510d6a851da56405c34bdb 10717 custodian_2024.1.9-3_arm64.buildinfo 43df92658fdee1cb11d8e6354a67b1490a855dbaefa703b11682039397faa1bc 174332 python-custodian-doc_2024.1.9-3_all.deb fe94360de39afd3f320cb2d528419ac440cca40befdb4cea296bc3b46225e8f2 80648 python3-custodian_2024.1.9-3_all.deb Files: 844c3854a75dd0e7a661e876ee3f77f9 10717 python optional custodian_2024.1.9-3_arm64.buildinfo 28fc713b9ca1f8ffb9d25c02deef03be 174332 doc optional python-custodian-doc_2024.1.9-3_all.deb ec9795ecbf361d844729770511b2d4f8 80648 python optional python3-custodian_2024.1.9-3_all.deb Tue May 14 19:29:41 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_21-10937.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.xnovhz1w/custodian_2024.1.9-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.xnovhz1w/custodian_2024.1.9-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.xnovhz1w/custodian_2024.1.9-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.xnovhz1w/b1/custodian_2024.1.9-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.xnovhz1w/b2/custodian_2024.1.9-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.359s) 0.359s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.019s) 0.019s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 696ms CPU time consumed: 692ms Tue May 14 19:29:42 UTC 2024 I: diffoscope 266 found no differences in the changes files, and a .buildinfo file also exists. Tue May 14 19:29:42 UTC 2024 I: custodian from unstable built successfully and reproducibly on arm64. Tue May 14 19:29:43 UTC 2024 I: Submitting .buildinfo files to external archives: Tue May 14 19:29:43 UTC 2024 I: Submitting 12K b1/custodian_2024.1.9-3_arm64.buildinfo.asc Tue May 14 19:29:45 UTC 2024 I: Submitting 12K b2/custodian_2024.1.9-3_arm64.buildinfo.asc Tue May 14 19:29:46 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue May 14 19:29:46 UTC 2024 I: Done submitting .buildinfo files. Tue May 14 19:29:46 UTC 2024 I: Removing signed custodian_2024.1.9-3_arm64.buildinfo.asc files: removed './b1/custodian_2024.1.9-3_arm64.buildinfo.asc' removed './b2/custodian_2024.1.9-3_arm64.buildinfo.asc'