Thu May 30 21:10:04 UTC 2024 I: starting to build clipper/unstable/arm64 on jenkins on '2024-05-30 21:09' Thu May 30 21:10:04 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_9/20448/console.log Thu May 30 21:10:04 UTC 2024 I: Downloading source for unstable/clipper=2.1.20201109-2 --2024-05-30 21:10:04-- http://deb.debian.org/debian/pool/main/c/clipper/clipper_2.1.20201109-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2318 (2.3K) [text/prs.lines.tag] Saving to: ‘clipper_2.1.20201109-2.dsc’ 0K .. 100% 303M=0s 2024-05-30 21:10:04 (303 MB/s) - ‘clipper_2.1.20201109-2.dsc’ saved [2318/2318] Thu May 30 21:10:04 UTC 2024 I: clipper_2.1.20201109-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: clipper Binary: libclipper-dev, libclipper2, libclipper-doc Architecture: any all Version: 2.1.20201109-2 Maintainer: Debian Science Maintainers Uploaders: Picca Frédéric-Emmanuel , Morten Kjeldgaard , Andrius Merkys Homepage: http://www.ysbl.york.ac.uk/~cowtan/clipper/clipper.html Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/science-team/clipper Vcs-Git: https://salsa.debian.org/science-team/clipper.git Build-Depends: debhelper-compat (= 13), fftw-dev, gfortran, libccp4-dev, libmmdb2-dev, sfftw-dev Build-Depends-Indep: doxygen Package-List: libclipper-dev deb libdevel optional arch=any libclipper-doc deb doc optional arch=all libclipper2 deb libs optional arch=any Checksums-Sha1: 4b22318cb33d91b3a1ebe4e2afeddfad91255936 4266641 clipper_2.1.20201109.orig.tar.gz 9ea225f0a8ec1a343653055c82551778a70c7686 35916 clipper_2.1.20201109-2.debian.tar.xz Checksums-Sha256: 01276ebda309ece40a972560eec5a4f83b97ee37757675454ebe36083053e570 4266641 clipper_2.1.20201109.orig.tar.gz f319eabd1d27fcb312138223d5861ad2aad870e4c3d1f97f1d1529f94c503df4 35916 clipper_2.1.20201109-2.debian.tar.xz Files: 58cbd551d8a87d3fc9b01a2a634b2b3b 4266641 clipper_2.1.20201109.orig.tar.gz a217893493ddb9bc1e546a3d91552cd1 35916 clipper_2.1.20201109-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmSQblcSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHD9YQAJ4EqsQM7DROLvgPquU0EjWk8nQLsMr4 96Kkez46ZPA20lbJT+Jd6sOi0cNwOGINcnxV9V3Pwaj7PFhcFpaJwZBJa3G8jKzu 55tGhunEyRl8/Ik1k8gVsuEUetaR5dxOXIfQNzITh8+Gf45Q9MX1Tia4DsIgy47L U7cF08SNUj1gBhHUTN0DSz1fw0G0RtuN2Spv4euwj4ovTyopEDqilSSTa1cNuVud 6rtUm2lFc6H5OW4Tsn8CWhZYTSUlHuXd9TCRkVuoQ7BpDS/pPgGpGvqnovm4cJIQ Qig7hTfwEmB93y0o9FTyYjI697uxlLg6M7Rs1KBEdf4yBe3u6oxMRpyEERZrlIBj 10WUcFpcMKxu/Ft6VUG+3OwexCKHTbBkm9ZulT4JgGbvAdLlEZ3EpXGm/3MOUncv ANtP0tgxGLhA8ylFZnMKOwDrAIJTgADiGKnZsh5EgLC2t02psuzfuWgzdpE/08zs Qd2rmX3EDiSd53v4rL26H348++47jrvDJgnzHSZBM9SAYDlrFZYj/DeD0L+QdnQf 2ETtNdM7vrlVvndgDWUtiGYg7bn1gaprBNsPqSIskDO4RgcztOJjfpH+80139KHS 5e1DnAfKZb9aXkieB3yWTXAbBEZAmghPZe1U9phHtP1P+6FsU8cMaNN13TWCQ6ix HA5sRrSIHFNZ =FUBV -----END PGP SIGNATURE----- Thu May 30 21:10:04 UTC 2024 I: Checking whether the package is not for us Thu May 30 21:10:04 UTC 2024 I: Starting 1st build on remote node codethink03-arm64.debian.net. Thu May 30 21:10:04 UTC 2024 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Thu May 30 21:15:55 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jul 2 15:33:06 -12 2025 I: pbuilder-time-stamp: 1751513586 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [clipper_2.1.20201109-2.dsc] I: copying [./clipper_2.1.20201109.orig.tar.gz] I: copying [./clipper_2.1.20201109-2.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Jun 19 15:03:51 2023 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./clipper_2.1.20201109-2.dsc: no acceptable signature found dpkg-source: info: extracting clipper in clipper-2.1.20201109 dpkg-source: info: unpacking clipper_2.1.20201109.orig.tar.gz dpkg-source: info: unpacking clipper_2.1.20201109-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add-mmdb2-to-examples-LIBS.patch dpkg-source: info: applying narrowing-conversions.patch dpkg-source: info: applying fix_pkg-config.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/410750/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='60e84726b3a94d36a141f579e487e71f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='410750' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.oXjUjU6Y/pbuilderrc_RvJs --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.oXjUjU6Y/b1 --logfile b1/build.log clipper_2.1.20201109-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 29 14:05 /bin -> usr/bin I: user script /srv/workspace/pbuilder/410750/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), fftw-dev, gfortran, libccp4-dev, libmmdb2-dev, sfftw-dev, doxygen dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19761 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on fftw-dev; however: Package fftw-dev is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on libccp4-dev; however: Package libccp4-dev is not installed. pbuilder-satisfydepends-dummy depends on libmmdb2-dev; however: Package libmmdb2-dev is not installed. pbuilder-satisfydepends-dummy depends on sfftw-dev; however: Package sfftw-dev is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} fftw-dev{a} fftw2{a} file{a} gettext{a} gettext-base{a} gfortran{a} gfortran-13{a} gfortran-13-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} ibverbs-providers{a} intltool-debian{a} libamd-comgr2{a} libamdhip64-5{a} libarchive-zip-perl{a} libbsd0{a} libccp4-data{a} libccp4-dev{a} libccp4c0t64{a} libccp4f0t64{a} libclang-cpp16t64{a} libclang1-16t64{a} libdebhelper-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm2{a} libedit2{a} libelf1t64{a} libevent-core-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libfabric1{a} libfile-stripnondeterminism-perl{a} libfmt9{a} libgfortran-13-dev{a} libgfortran5{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-plugins{a} libhwloc15{a} libibverbs1{a} libicu72{a} libllvm16t64{a} libllvm17t64{a} libmagic-mgc{a} libmagic1t64{a} libmmdb2-0{a} libmmdb2-dev{a} libmunge2{a} libnl-3-200{a} libnl-route-3-200{a} libnuma1{a} libopenmpi3t64{a} libpciaccess0{a} libpipeline1{a} libpmix2t64{a} librdmacm1t64{a} libtool{a} libuchardet0{a} libucx0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} libz3-4{a} m4{a} man-db{a} ocl-icd-libopencl1{a} po-debconf{a} sensible-utils{a} sfftw-dev{a} sfftw2{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 85 newly installed, 0 to remove and 0 not upgraded. Need to get 127 MB of archives. After unpacking 615 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.1-3 [93.5 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg-2 [609 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.15.3 [901 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libbsd0 arm64 0.12.2-1 [129 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libedit2 arm64 3.1-20240517-1 [88.9 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libz3-4 arm64 4.8.12-3.1+b2 [6508 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libllvm16t64 arm64 1:16.0.6-27 [20.7 MB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libclang-cpp16t64 arm64 1:16.0.6-27 [10.5 MB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libclang1-16t64 arm64 1:16.0.6-27 [5932 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libfmt9 arm64 9.1.0+ds1-2 [107 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 doxygen arm64 1.9.8+ds-2+b1 [4484 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libevent-core-2.1-7t64 arm64 2.1.12-stable-10 [125 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [54.1 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libnl-3-200 arm64 3.7.0-0.3 [56.5 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libnl-route-3-200 arm64 3.7.0-0.3 [165 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libibverbs1 arm64 50.0-2+b1 [58.2 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 ibverbs-providers arm64 50.0-2+b1 [315 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 librdmacm1t64 arm64 50.0-2+b1 [66.6 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libfabric1 arm64 1.17.0-3+b1 [479 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libhwloc15 arm64 2.10.0-1+b1 [140 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libmunge2 arm64 0.5.15-4 [19.2 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libpciaccess0 arm64 0.17-3+b1 [51.1 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.9-1+b1 [18.1 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.2-3+b1 [24.3 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2 [143 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.7-1 [328 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libxnvctrl0 arm64 535.171.04-1 [13.8 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 ocl-icd-libopencl1 arm64 2.3.2-1+b1 [39.3 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libhwloc-plugins arm64 2.10.0-1+b1 [18.0 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libpmix2t64 arm64 5.0.2-3 [580 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libllvm17t64 arm64 1:17.0.6-12 [21.3 MB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3+b1 [12.1 MB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libdrm-common all 2.4.120-2 [7688 B] Get: 62 http://deb.debian.org/debian unstable/main arm64 libdrm2 arm64 2.4.120-2 [37.5 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [21.0 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libnuma1 arm64 2.0.18-1 [21.4 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libhsakmt1 arm64 5.7.0-1 [57.6 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libhsa-runtime64-1 arm64 5.7.1-2 [276 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libamdhip64-5 arm64 5.7.1-3 [8698 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libucx0 arm64 1.16.0+ds-5 [938 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libopenmpi3t64 arm64 4.1.6-13.3 [2170 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 fftw2 arm64 2.1.5-6+b1 [197 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 fftw-dev arm64 2.1.5-6+b1 [235 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.1.0-1 [361 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libgfortran-13-dev arm64 13.2.0-25 [401 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-25 [8827 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 gfortran-13 arm64 13.2.0-25 [12.8 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7 [1288 B] Get: 77 http://deb.debian.org/debian unstable/main arm64 gfortran arm64 4:13.2.0-7 [1428 B] Get: 78 http://deb.debian.org/debian unstable/main arm64 libccp4-data all 8.0.0-3 [62.5 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libccp4c0t64 arm64 8.0.0-3 [82.0 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libmmdb2-0 arm64 2.0.22-1+b1 [307 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libccp4f0t64 arm64 8.0.0-3 [174 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libccp4-dev arm64 8.0.0-3 [42.9 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libmmdb2-dev arm64 2.0.22-1+b1 [92.9 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 sfftw2 arm64 2.1.5-6+b1 [197 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 sfftw-dev arm64 2.1.5-6+b1 [238 kB] Fetched 127 MB in 2s (72.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19761 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-4_arm64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.1-3_arm64.deb ... Unpacking bsdextrautils (2.40.1-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... 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Setting up libicu72:arm64 (72.1-4+b1) ... Setting up bsdextrautils (2.40.1-3) ... Setting up libmmdb2-0:arm64 (2.0.22-1+b1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libccp4-data (8.0.0-3) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:arm64 (4.8.12-3.1+b2) ... Setting up libmunge2:arm64 (0.5.15-4) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libhwloc15:arm64 (2.10.0-1+b1) ... Setting up libmmdb2-dev (2.0.22-1+b1) ... Setting up autopoint (0.21-14) ... Setting up libgfortran5:arm64 (14.1.0-1) ... Setting up autoconf (2.71-3) ... Setting up libfmt9:arm64 (9.1.0+ds1-2) ... Setting up libnuma1:arm64 (2.0.18-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up ocl-icd-libopencl1:arm64 (2.3.2-1+b1) ... Setting up libccp4c0t64:arm64 (8.0.0-3) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libnl-3-200:arm64 (3.7.0-0.3) ... Setting up libevent-core-2.1-7t64:arm64 (2.1.12-stable-10) ... Setting up libgfortran-13-dev:arm64 (13.2.0-25) ... Setting up libbsd0:arm64 (0.12.2-1) ... Setting up libdrm-common (2.4.120-2) ... Setting up libxml2:arm64 (2.12.7+dfsg-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3+b1) ... Setting up libxcb1:arm64 (1.17.0-2) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... Setting up libedit2:arm64 (3.1-20240517-1) ... Setting up gfortran-13-aarch64-linux-gnu (13.2.0-25) ... Setting up libccp4f0t64:arm64 (8.0.0-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnl-route-3-200:arm64 (3.7.0-0.3) ... Setting up libllvm16t64:arm64 (1:16.0.6-27) ... Setting up dh-autoreconf (20) ... Setting up libllvm17t64:arm64 (1:17.0.6-12) ... Setting up gfortran-13 (13.2.0-25) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libdrm2:arm64 (2.4.120-2) ... Setting up groff-base (1.23.0-4) ... Setting up libx11-6:arm64 (2:1.8.7-1+b1) ... Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7) ... Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3+b1) ... Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... Setting up libibverbs1:arm64 (50.0-2+b1) ... Setting up libccp4-dev:arm64 (8.0.0-3) ... Setting up ibverbs-providers:arm64 (50.0-2+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:arm64 (2:1.3.4-1+b1) ... Setting up libclang1-16t64 (1:16.0.6-27) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libclang-cpp16t64 (1:16.0.6-27) ... Setting up gfortran (4:13.2.0-7) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxnvctrl0:arm64 (535.171.04-1) ... Setting up doxygen (1.9.8+ds-2+b1) ... Setting up librdmacm1t64:arm64 (50.0-2+b1) ... Setting up libhsakmt1:arm64 (5.7.0-1) ... Setting up libfabric1:arm64 (1.17.0-3+b1) ... Setting up debhelper (13.15.3) ... Setting up libhwloc-plugins:arm64 (2.10.0-1+b1) ... Setting up libpmix2t64:arm64 (5.0.2-3) ... Setting up libhsa-runtime64-1 (5.7.1-2) ... Setting up libamdhip64-5 (5.7.1-3) ... Setting up libucx0:arm64 (1.16.0+ds-5) ... Setting up libopenmpi3t64:arm64 (4.1.6-13.3) ... Setting up sfftw2 (2.1.5-6+b1) ... Setting up fftw2 (2.1.5-6+b1) ... Setting up sfftw-dev (2.1.5-6+b1) ... Setting up fftw-dev (2.1.5-6+b1) ... Processing triggers for libc-bin (2.38-11) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/clipper-2.1.20201109/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../clipper_2.1.20201109-2_source.changes dpkg-buildpackage: info: source package clipper dpkg-buildpackage: info: source version 2.1.20201109-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --ddeb-migration='libclipper2-dbg (<< 2.1.20160809-1~)' dh_autoreconf_clean "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/clipper-2.1.20201109' rm -f doxy.core.tag rm -rf doc/ dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libclipper-dev.substvars debian/libclipper2.substvars debian/libclipper-doc.substvars debian/files rm -fr -- debian/libclipper-dev/ debian/tmp/ debian/libclipper2/ debian/libclipper-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' debian/rules binary dh binary --ddeb-migration='libclipper2-dbg (<< 2.1.20160809-1~)' dh_update_autotools_config "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" cp -an --reflink=auto build-aux/config.guess debian/.debhelper/bucket/files/4676029966e14b0a9bfc430963a97196ea50451e4aa3ff23c41256b0046f6efe.tmp cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead mv debian/.debhelper/bucket/files/4676029966e14b0a9bfc430963a97196ea50451e4aa3ff23c41256b0046f6efe.tmp debian/.debhelper/bucket/files/4676029966e14b0a9bfc430963a97196ea50451e4aa3ff23c41256b0046f6efe cp -f /usr/share/misc/config.guess ./build-aux/config.guess cp -an --reflink=auto build-aux/config.sub debian/.debhelper/bucket/files/4add30a10b137a5a4667e12868fb4783e385dbf865cfb7017b205321bd1a2f39.tmp cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead mv debian/.debhelper/bucket/files/4add30a10b137a5a4667e12868fb4783e385dbf865cfb7017b205321bd1a2f39.tmp debian/.debhelper/bucket/files/4add30a10b137a5a4667e12868fb4783e385dbf865cfb7017b205321bd1a2f39 cp -f /usr/share/misc/config.sub ./build-aux/config.sub dh_autoreconf "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:58: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:58: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... m4/fftw.m4:35: SINGLE_FFTW2 is expanded from... configure.ac:58: the top level configure.ac:116: warning: AC_OUTPUT should be used without arguments. configure.ac:116: You should run autoupdate. configure.ac:10: installing 'build-aux/compile' configure.ac:8: installing 'build-aux/missing' clipper/Makefile.am: installing 'build-aux/depcomp' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/clipper-2.1.20201109' dh_auto_configure -- --enable-mmdb --enable-minimol --enable-cif --enable-ccp4 --enable-shared --disable-static --enable-fortran ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-mmdb --enable-minimol --enable-cif --enable-ccp4 --enable-shared --disable-static --enable-fortran checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... unsupported checking for g++ option to enable C++98 features... none needed checking dependency style of g++... none checking for ar... ar checking the archiver (ar) interface... ar checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for g77... no checking for xlf... no checking for f77... f77 checking whether the compiler supports GNU Fortran 77... yes checking whether f77 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... yes checking if f77 supports -c -o file.o... yes checking if f77 supports -c -o file.o... (cached) yes checking whether the f77 linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from f77... -v checking for Fortran 77 libraries of f77... -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lgfortran -lm checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking for library containing cos... -lm checking for prefixed single-precision FFTW2 (sfftw.h)... yes checking for the pthreads library -lpthreads... no checking for the pthreads library -lpthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking for MMDB_CCIF_Init in -lmmdb2... yes checking for mmdb2/mmdb_manager.h... yes checking for ccp4_banner in -lccp4c... yes checking for ccp4/ccp4_general.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating clipper/Makefile config.status: creating clipper/core/Makefile config.status: creating clipper/contrib/Makefile config.status: creating examples/Makefile config.status: creating clipper.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Configuration Summary ------------------------------ core: yes contrib: yes phs: yes cns: yes mmdb: yes minimol: yes cif: yes ccp4: yes cctbx: no fortran: yes make[1]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' rm -f debian/libclipper-dev.debhelper.log debian/libclipper-doc.debhelper.log debian/libclipper2.debhelper.log debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/clipper-2.1.20201109' doxygen debian/Doxyfile warning: Tag 'TCL_SUBST' at line 203 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SYMBOL_CACHE_SIZE' at line 336 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 849 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 945 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1167 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1306 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 1404 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 1410 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 1571 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 1583 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 1592 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 1622 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 1627 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 1776 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. /build/reproducible-path/clipper-2.1.20201109/clipper/core/cell.h:1: warning: the name 'lib/cell.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_instance.h:1: warning: the name 'lib/clipper_instance.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_memory.h:1: warning: the name 'lib/clipper_memory.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_message.h:1: warning: the name 'lib/clipper_message.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_precision.h:1: warning: the name 'lib/clipper_precision.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_stats.h:1: warning: the name 'lib/clipper_stats.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_sysdep.h:1: warning: the name 'lib/clipper_sysdep.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_test.h:1: warning: the name 'lib/clipper_test.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_thread.h:1: warning: the name 'lib/clipper_thread.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_types.h:1: warning: the name 'lib/clipper_types.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h:1: warning: the name 'lib/clipper_util.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/container.h:1: warning: the name 'lib/container.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/container_hkl.h:1: warning: the name 'lib/container_hkl.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/container_map.h:1: warning: the name 'lib/container_map.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/container_types.h:1: warning: the name 'lib/container_types.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/coords.h:1: warning: the name 'lib/coords.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/derivs.h:1: warning: the name 'lib/derivs.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.h:1: warning: the name 'lib/fftmap.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap_sparse.h:1: warning: the name 'lib/fftmap_sparse.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/hkl_compute.h:1: warning: the name 'lib/hkl_compute.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/hkl_data.h:1: warning: the name 'lib/hkl_data.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/hkl_datatypes.h:1: warning: the name 'lib/hkl_datatypes.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/hkl_info.h:1: warning: the name 'lib/hkl_info.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/hkl_lookup.h:1: warning: the name 'lib/hkl_lookup.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/hkl_operators.h:1: warning: the name 'lib/hkl_operators.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_interp.h:1: warning: the name 'lib/map_interp.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_utils.h:1: warning: the name 'lib/map_utils.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/nxmap.h:1: warning: the name 'lib/nxmap.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/nxmap_operator.h:1: warning: the name 'lib/nxmap_operator.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/resol_basisfn.h:1: warning: the name 'lib/resol_basisfn.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/resol_fn.h:1: warning: the name 'lib/resol_fn.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/resol_targetfn.h:1: warning: the name 'lib/resol_targetfn.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/rotation.h:1: warning: the name 'lib/rotation.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/spacegroup.h:1: warning: the name 'lib/spacegroup.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/symop.h:1: warning: the name 'lib/symop.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/test_core.h:1: warning: the name 'lib/test_core.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/test_data.h:1: warning: the name 'lib/test_data.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/xmap.h:1: warning: the name 'lib/xmap.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.cpp:165: warning: no matching class member found for template void clipper::Util::swap< ftype32 >(float &a, ftype32 &b) Possible candidates: 'template < T > static void clipper::Util::swap(T &a, T &b)' at line 150 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h 'template < T > static void clipper::Util::swap(T &a, T &b, T &c)' at line 153 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.cpp:166: warning: no matching class member found for template void clipper::Util::swap< ftype32 >(float &a, ftype32 &b, ftype32 &c) Possible candidates: 'template < T > static void clipper::Util::swap(T &a, T &b)' at line 150 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h 'template < T > static void clipper::Util::swap(T &a, T &b, T &c)' at line 153 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.cpp:173: warning: no matching class member found for template void clipper::Util::swap< ftype64 >(double &a, ftype64 &b) Possible candidates: 'template < T > static void clipper::Util::swap(T &a, T &b)' at line 150 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h 'template < T > static void clipper::Util::swap(T &a, T &b, T &c)' at line 153 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.cpp:174: warning: no matching class member found for template void clipper::Util::swap< ftype64 >(double &a, ftype64 &b, ftype64 &c) Possible candidates: 'template < T > static void clipper::Util::swap(T &a, T &b)' at line 150 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h 'template < T > static void clipper::Util::swap(T &a, T &b, T &c)' at line 153 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.cpp:181: warning: no matching class member found for template void clipper::Util::swap< int >(int &a, int &b) Possible candidates: 'template < T > static void clipper::Util::swap(T &a, T &b)' at line 150 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h 'template < T > static void clipper::Util::swap(T &a, T &b, T &c)' at line 153 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.cpp:182: warning: no matching class member found for template void clipper::Util::swap< int >(int &a, int &b, int &c) Possible candidates: 'template < T > static void clipper::Util::swap(T &a, T &b)' at line 150 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h 'template < T > static void clipper::Util::swap(T &a, T &b, T &c)' at line 153 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:425: warning: no matching class member found for template void clipper::FFTmap::get_recip_data< ftype32 >(const clipper::HKL &rfl, clipper::datatypes::F_phi< float > &fphi) const Possible candidates: 'template < T > void clipper::FFTmap::get_recip_data(const HKL &rfl, datatypes::F_phi< T > &fphi) const' at line 189 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.h 'datatypes::F_phi< ffttype > clipper::FFTmap::get_recip_data(const HKL &rfl) const' at line 199 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.h /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:427: warning: no matching class member found for template void clipper::FFTmap::get_real_data< ftype32 >(const clipper::Coord_grid &c, float &datum) const Possible candidates: 'template < T > void clipper::FFTmap::get_real_data(const Coord_grid &c, T &datum) const' at line 194 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.h 'const ffttype & clipper::FFTmap::get_real_data(const Coord_grid &c) const' at line 201 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.h /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:429: warning: no matching class member found for template void clipper::FFTmap::get_recip_data< ftype64 >(const clipper::HKL &rfl, clipper::datatypes::F_phi< double > &fphi) const Possible candidates: 'template < T > void clipper::FFTmap::get_recip_data(const HKL &rfl, datatypes::F_phi< T > &fphi) const' at line 189 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.h 'datatypes::F_phi< ffttype > clipper::FFTmap::get_recip_data(const HKL &rfl) const' at line 199 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.h /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:431: warning: no matching class member found for template void clipper::FFTmap::get_real_data< ftype64 >(const clipper::Coord_grid &c, double &datum) const Possible candidates: 'template < T > void clipper::FFTmap::get_real_data(const Coord_grid &c, T &datum) const' at line 194 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.h 'const ffttype & clipper::FFTmap::get_real_data(const Coord_grid &c) const' at line 201 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.h /build/reproducible-path/clipper-2.1.20201109/dox/clipper_contrib.dox:1: warning: found more than one \mainpage comment block! (first occurrence: /build/reproducible-path/clipper-2.1.20201109/dox/clipper.dox, line 1), Skipping current block! /build/reproducible-path/clipper-2.1.20201109/dox/clipper_minimol.dox:1: warning: found more than one \mainpage comment block! (first occurrence: /build/reproducible-path/clipper-2.1.20201109/dox/clipper.dox, line 1), Skipping current block! /build/reproducible-path/clipper-2.1.20201109/dox/clipper_mmdb.dox:1: warning: found more than one \mainpage comment block! (first occurrence: /build/reproducible-path/clipper-2.1.20201109/dox/clipper.dox, line 1), Skipping current block! /build/reproducible-path/clipper-2.1.20201109/dox/clipper_mmdbold.dox:1: warning: found more than one \mainpage comment block! (first occurrence: /build/reproducible-path/clipper-2.1.20201109/dox/clipper.dox, line 1), Skipping current block! sh: 1: latex: not found error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log! sh: 1: latex: not found error: Problems running latex. Check your installation or look for typos in _formulas_dark.tex and check _formulas_dark.log! /build/reproducible-path/clipper-2.1.20201109/dox/develop.dox:167: warning: Illegal command \width found as part of a image /build/reproducible-path/clipper-2.1.20201109/dox/installation.dox:18: warning: included file install.csh is not found. Check your EXAMPLE_PATH /build/reproducible-path/clipper-2.1.20201109/clipper/core/atomsf.cpp:543: warning: argument 'The' of command @param is not found in the argument list of clipper::AtomShapeFn::rho(const Coord_orth &xyz) const /build/reproducible-path/clipper-2.1.20201109/clipper/core/atomsf.cpp:588: warning: Found unknown command '\patam' /build/reproducible-path/clipper-2.1.20201109/clipper/core/atomsf.cpp:583: warning: The following parameter of clipper::AtomShapeFn::rho_grad(const Coord_orth &xyz, ftype &rho, std::vector< ftype > &grad) const is not documented: parameter 'rho' /build/reproducible-path/clipper-2.1.20201109/clipper/core/atomsf.cpp:670: warning: Found unknown command '\patam' /build/reproducible-path/clipper-2.1.20201109/clipper/core/atomsf.cpp:665: warning: The following parameter of clipper::AtomShapeFn::rho_curv(const Coord_orth &xyz, ftype &rho, std::vector< ftype > &grad, Matrix< ftype > &curv) const is not documented: parameter 'rho' /build/reproducible-path/clipper-2.1.20201109/clipper/core/atomsf.cpp:572: warning: argument 'invresolsq' of command @param is not found in the argument list of clipper::AtomShapeFn::rho(const ftype &rsq) const /build/reproducible-path/clipper-2.1.20201109/clipper/core/atomsf.cpp:572: warning: argument 'The' of command @param is not found in the argument list of clipper::AtomShapeFn::rho(const ftype &rsq) const /build/reproducible-path/clipper-2.1.20201109/clipper/core/atomsf.cpp:572: warning: The following parameter of clipper::AtomShapeFn::rho(const ftype &rsq) const is not documented: parameter 'rsq' /build/reproducible-path/clipper-2.1.20201109/clipper/core/container_types.cpp:104: warning: argument 'rate_' of command @param is not found in the argument list of clipper::CGrid_sampling::init(const Spacegroup &spacegroup, const Cell &cell, const Resolution &resolution, const ftype rate) /build/reproducible-path/clipper-2.1.20201109/clipper/core/container_types.cpp:104: warning: The following parameter of clipper::CGrid_sampling::init(const Spacegroup &spacegroup, const Cell &cell, const Resolution &resolution, const ftype rate) is not documented: parameter 'rate' /build/reproducible-path/clipper-2.1.20201109/clipper/core/container_hkl.cpp:51: warning: The following parameter of clipper::CHKL_info::CHKL_info(const String name="", const Spacegroup &spacegroup=NullSpacegroup, const Cell &cell=NullCell, const Resolution &resolution=NullResolution, const bool &generate=false) is not documented: parameter 'name' /build/reproducible-path/clipper-2.1.20201109/clipper/core/container_hkl.cpp:59: warning: The following parameter of clipper::CHKL_info::CHKL_info(Container &parent, const String name="", const bool &generate=false) is not documented: parameter 'generate' /build/reproducible-path/clipper-2.1.20201109/clipper/core/container_map.h:180: warning: argument 'grid' of command @param is not found in the argument list of clipper::CNXmap_operator< T >::init(const Cell &cell, const Grid_sampling &grid_sampling, const NXmap< T > &nxmap, const RTop_orth &nxop) /build/reproducible-path/clipper-2.1.20201109/clipper/core/container_map.h:180: warning: The following parameter of clipper::CNXmap_operator::init(const Cell &cell, const Grid_sampling &grid_sampling, const NXmap< T > &nxmap, const RTop_orth &nxop) is not documented: parameter 'grid_sampling' /build/reproducible-path/clipper-2.1.20201109/clipper/core/coords.h:736: warning: The following parameter of clipper::Coord_grid::deindex(const Grid &g, const int &index) is not documented: parameter 'index' /build/reproducible-path/clipper-2.1.20201109/clipper/core/coords.h:736: warning: found documented return type for clipper::Coord_grid::deindex that does not return anything /build/reproducible-path/clipper-2.1.20201109/clipper/core/container_map.h:126: warning: argument 'name' of command @param is not found in the argument list of clipper::CXmap< T >::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling &grid_sampling) /build/reproducible-path/clipper-2.1.20201109/clipper/core/container_map.h:126: warning: argument 'grid' of command @param is not found in the argument list of clipper::CXmap< T >::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling &grid_sampling) /build/reproducible-path/clipper-2.1.20201109/clipper/core/container_map.h:126: warning: The following parameters of clipper::CXmap::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling &grid_sampling) are not documented: parameter 'cell' parameter 'grid_sampling' /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:280: warning: argument 'precalc' of command @param is not found in the argument list of clipper::FFTmap::FFTmap(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling grid_sam, const FFTtype type=Default) /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:280: warning: The following parameter of clipper::FFTmap::FFTmap(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling grid_sam, const FFTtype type=Default) is not documented: parameter 'type' /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:296: warning: argument 'precalc' of command @param is not found in the argument list of clipper::FFTmap::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling grid_sam, const FFTtype type=Default) /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:296: warning: The following parameter of clipper::FFTmap::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling grid_sam, const FFTtype type=Default) is not documented: parameter 'type' /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:145: warning: argument 'Scale' of command @param is not found in the argument list of clipper::FFTmap_p1::fft_h_to_x(const ftype &scale) /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:145: warning: The following parameter of clipper::FFTmap_p1::fft_h_to_x(const ftype &scale) is not documented: parameter 'scale' /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:177: warning: argument 'Scale' of command @param is not found in the argument list of clipper::FFTmap_p1::fft_x_to_h(const ftype &scale) /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:177: warning: The following parameter of clipper::FFTmap_p1::fft_x_to_h(const ftype &scale) is not documented: parameter 'scale' /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:225: warning: The following parameter of clipper::FFTmap_p1::set_hkl(const HKL &hkl, const std::complex< ffttype > &f) is not documented: parameter 'f' /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap_sparse.cpp:279: warning: argument 'uvw' of command @param is not found in the argument list of clipper::FFTmap_sparse_p1_xh::require_cplx_data(const Coord_grid &hkl) /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap_sparse.cpp:279: warning: The following parameter of clipper::FFTmap_sparse_p1_xh::require_cplx_data(const Coord_grid &hkl) is not documented: parameter 'hkl' /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap_sparse.cpp:284: warning: argument 'uvw' of command @param is not found in the argument list of clipper::FFTmap_sparse_p1_xh::cplx_data(const Coord_grid &hkl) const /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap_sparse.cpp:284: warning: The following parameter of clipper::FFTmap_sparse_p1_xh::cplx_data(const Coord_grid &hkl) const is not documented: parameter 'hkl' /build/reproducible-path/clipper-2.1.20201109/clipper/core/coords.h:703: warning: argument 'hkl' of command @param is not found in the argument list of clipper::HKL::sym_phase_shift(const Symop &op) const /build/reproducible-path/clipper-2.1.20201109/clipper/core/coords.h:703: warning: The following parameter of clipper::HKL::sym_phase_shift(const Symop &op) const is not documented: parameter 'op' /build/reproducible-path/clipper-2.1.20201109/clipper/core/hkl_data.h:510: warning: argument 'data' of command @param is not found in the argument list of clipper::HKL_data< T >::set_data(const HKL &hkl, const T &data_) /build/reproducible-path/clipper-2.1.20201109/clipper/core/hkl_data.h:510: warning: The following parameter of clipper::HKL_data::set_data(const HKL &hkl, const T &data_) is not documented: parameter 'data_' /build/reproducible-path/clipper-2.1.20201109/clipper/core/hkl_info.cpp:80: warning: The following parameter of clipper::HKL_info::HKL_info(const Spacegroup &spacegroup, const Cell &cell, const Resolution &resolution, const bool &generate=false) is not documented: parameter 'generate' /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_interp.h:208: warning: The following parameters of clipper::Interp_cubic::interp(const M &map, const Coord_map &pos, T &val) are not documented: parameter 'map' parameter 'val' /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_interp.h:208: warning: found documented return type for clipper::Interp_cubic::interp that does not return anything /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_interp.h:260: warning: The following parameter of clipper::Interp_cubic::interp_grad(const M &map, const Coord_map &pos, T &val, Grad_map< T > &grad) is not documented: parameter 'map' /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_interp.h:340: warning: The following parameters of clipper::Interp_cubic::interp_curv(const M &map, const Coord_map &pos, T &val, Grad_map< T > &grad, Curv_map< T > &curv) are not documented: parameter 'map' parameter 'curv' /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_interp.h:159: warning: The following parameter of clipper::Interp_linear::interp(const M &map, const Coord_map &pos, T &val) is not documented: parameter 'val' /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_interp.h:159: warning: found documented return type for clipper::Interp_linear::interp that does not return anything /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_interp.h:131: warning: The following parameter of clipper::Interp_nearest::interp(const M &map, const Coord_map &pos, T &val) is not documented: parameter 'val' /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_interp.h:131: warning: found documented return type for clipper::Interp_nearest::interp that does not return anything /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_utils.cpp:55: warning: Found unknown command '\params' /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_utils.cpp:56: warning: Found unknown command '\params' /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_utils.cpp:64: warning: Found unknown command '\params' /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_utils.cpp:65: warning: Found unknown command '\params' /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_utils.h:113: warning: Found unknown command '\params' /build/reproducible-path/clipper-2.1.20201109/clipper/core/nxmap.h:384: warning: argument 'curv' of command @param is not found in the argument list of clipper::NXmap< T >::interp_grad(const Coord_map &pos, T &val, Grad_map< T > &grad) const /build/reproducible-path/clipper-2.1.20201109/clipper/core/resol_fn.cpp:141: warning: argument 'damp_' of command @param is not found in the argument list of clipper::ResolutionFn::ResolutionFn(const HKL_info &hkl_info, const BasisFn_base &basisfn, const TargetFn_base &targetfn, const std::vector< ftype > ¶ms, const ftype damp=0.0, const bool debug=false) /build/reproducible-path/clipper-2.1.20201109/clipper/core/resol_fn.cpp:141: warning: The following parameters of clipper::ResolutionFn::ResolutionFn(const HKL_info &hkl_info, const BasisFn_base &basisfn, const TargetFn_base &targetfn, const std::vector< ftype > ¶ms, const ftype damp=0.0, const bool debug=false) are not documented: parameter 'damp' parameter 'debug' /build/reproducible-path/clipper-2.1.20201109/clipper/core/resol_fn.cpp:200: warning: argument 'damp_' of command @param is not found in the argument list of clipper::ResolutionFn_nonlinear::ResolutionFn_nonlinear(const HKL_info &hkl_info, const BasisFn_base &basisfn, const TargetFn_base &targetfn, const std::vector< ftype > ¶ms, const ftype damp=0.0, const bool debug=false) /build/reproducible-path/clipper-2.1.20201109/clipper/core/resol_fn.cpp:200: warning: The following parameters of clipper::ResolutionFn_nonlinear::ResolutionFn_nonlinear(const HKL_info &hkl_info, const BasisFn_base &basisfn, const TargetFn_base &targetfn, const std::vector< ftype > ¶ms, const ftype damp=0.0, const bool debug=false) are not documented: parameter 'params' parameter 'damp' parameter 'debug' /build/reproducible-path/clipper-2.1.20201109/clipper/core/spacegroup.cpp:462: warning: argument 'name' of command @param is not found in the argument list of clipper::Spgr_descr::Spgr_descr(const String &symb, TYPE type=Unknown) /build/reproducible-path/clipper-2.1.20201109/clipper/core/spacegroup.cpp:462: warning: The following parameter of clipper::Spgr_descr::Spgr_descr(const String &symb, TYPE type=Unknown) is not documented: parameter 'symb' /build/reproducible-path/clipper-2.1.20201109/clipper/core/symop.cpp:118: warning: argument 'mat' of command @param is not found in the argument list of clipper::Symop::Symop(const RTop<> &rt) /build/reproducible-path/clipper-2.1.20201109/clipper/core/symop.cpp:118: warning: The following parameter of clipper::Symop::Symop(const RTop<> &rt) is not documented: parameter 'rt' /build/reproducible-path/clipper-2.1.20201109/clipper/core/symop.cpp:215: warning: clipper::Symop_code::symop has @param documentation sections but no arguments /build/reproducible-path/clipper-2.1.20201109/clipper/core/symop.cpp:231: warning: clipper::Symop_code::isymop has @param documentation sections but no arguments /build/reproducible-path/clipper-2.1.20201109/clipper/core/resol_targetfn.h:86: warning: Found unknown command '\Note' /build/reproducible-path/clipper-2.1.20201109/clipper/core/resol_targetfn.h:62: warning: Found unknown command '\Note' /build/reproducible-path/clipper-2.1.20201109/clipper/core/coords.cpp:626: warning: argument 'u' of command @param is not found in the argument list of clipper::U_aniso_frac::transform(const RTop_frac &op) const /build/reproducible-path/clipper-2.1.20201109/clipper/core/coords.cpp:626: warning: The following parameter of clipper::U_aniso_frac::transform(const RTop_frac &op) const is not documented: parameter 'op' /build/reproducible-path/clipper-2.1.20201109/clipper/core/coords.cpp:614: warning: argument 'u' of command @param is not found in the argument list of clipper::U_aniso_orth::transform(const RTop_orth &op) const /build/reproducible-path/clipper-2.1.20201109/clipper/core/coords.cpp:614: warning: The following parameter of clipper::U_aniso_orth::transform(const RTop_orth &op) const is not documented: parameter 'op' /build/reproducible-path/clipper-2.1.20201109/clipper/core/xmap.h:600: warning: The following parameter of clipper::Xmap::fft_from(const H &fphidata, const FFTtype type=Default) is not documented: parameter 'type' /build/reproducible-path/clipper-2.1.20201109/clipper/core/xmap.h:665: warning: The following parameter of clipper::Xmap::fft_to(H &fphidata, const FFTtype type=Default) const is not documented: parameter 'type' make[1]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' dh_auto_build "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" 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|| echo './'`clipper_message.cpp atomsf.cpp: In member function 'const clipper::ScatteringFactorsData& clipper::ScatteringFactors::operator[](const clipper::String&) const': atomsf.cpp:438:82: warning: control reaches end of non-void function [-Wreturn-type] 438 | default: Message::message(Message_fatal("unimplemented type")); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atomsf.cpp: In static member function 'static const clipper::ScatteringFactorsData& clipper::ScatteringFactorsTraits::sf(const clipper::String&, int) [with clipper::ScatteringFactorsType TYPE = clipper::SF_WAASMAIER_KIRFEL]': atomsf.cpp:406:1: warning: control reaches end of non-void function [-Wreturn-type] 406 | } | ^ atomsf.cpp: In static member function 'static const clipper::ScatteringFactorsData& clipper::ScatteringFactorsTraits::sf(const clipper::String&, int) [with clipper::ScatteringFactorsType TYPE = clipper::SF_ELECTRON]': atomsf.cpp:406:1: warning: control reaches end of non-void function [-Wreturn-type] libtool: 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-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -c ccp4/ccp4_mtz_types.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_types.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -c ccp4/ccp4_mtz_io.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_io.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -c ccp4/ccp4_map_io.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_map_io.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -c -o ccp4/ccp4_utils.lo ccp4/ccp4_utils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -c ccp4/ccp4_utils.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_utils.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -c -o cns/cns_hkl_io.lo cns/cns_hkl_io.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -c -o cns/cns_map_io.lo cns/cns_map_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -c cns/cns_hkl_io.cpp -fPIC -DPIC -o cns/.libs/cns_hkl_io.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -c cns/cns_map_io.cpp -fPIC -DPIC -o cns/.libs/cns_map_io.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -c -o fortran/f_interface.lo fortran/f_interface.cpp /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o mmdb/libclipper-mmdb.la -rpath /usr/lib/aarch64-linux-gnu mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o phs/libclipper-phs.la -rpath /usr/lib/aarch64-linux-gnu phs/phs_io.lo core/libclipper-core.la -lm libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -c fortran/f_interface.cpp -fPIC -DPIC -o fortran/.libs/f_interface.o cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = unsigned char]': cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = char]': cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = short unsigned int]': cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = short int]': cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = unsigned int]': cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = int]': cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = float]': cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = double]': cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = unsigned char]': cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = char]': cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = short unsigned int]': cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = short int]': cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = unsigned int]': cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = int]': cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = float]': cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = double]': cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap&, T) [with T = float]': cns/cns_map_io.cpp:497:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 497 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:500:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 500 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:504:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 504 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:507:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 507 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:518:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 518 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:536:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 536 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:544:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 544 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:553:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 553 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap&, T) [with T = double]': cns/cns_map_io.cpp:497:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 497 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:500:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 500 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:504:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 504 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:507:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 507 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:518:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 518 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:536:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 536 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:544:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 544 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:553:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 553 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o mmdb/.libs/clipper_mmdb.o -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/core/.libs core/.libs/libclipper-core.so -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o phs/.libs/phs_io.o -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/core/.libs core/.libs/libclipper-core.so -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1 libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so.2" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so.2") libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so") libtool: link: ( cd "mmdb/.libs" && rm -f "libclipper-mmdb.la" && ln -s "../libclipper-mmdb.la" "libclipper-mmdb.la" ) libtool: link: (cd "phs/.libs" && rm -f "libclipper-phs.so.2" && ln -s "libclipper-phs.so.2.0.1" "libclipper-phs.so.2") libtool: link: (cd "phs/.libs" && rm -f "libclipper-phs.so" && ln -s "libclipper-phs.so.2.0.1" "libclipper-phs.so") libtool: link: ( cd "phs/.libs" && rm -f "libclipper-phs.la" && ln -s "../libclipper-phs.la" "libclipper-phs.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o cif/libclipper-cif.la -rpath /usr/lib/aarch64-linux-gnu cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now 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--mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o cns/libclipper-cns.la -rpath /usr/lib/aarch64-linux-gnu cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o ccp4/libclipper-ccp4.la -rpath /usr/lib/aarch64-linux-gnu ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o 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'/build/reproducible-path/clipper-2.1.20201109' make[2]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' make[1]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' dh_auto_test "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" make -j12 check "TESTSUITEFLAGS=-j12 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/clipper-2.1.20201109' Making check in clipper make[2]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper' Making check in core make[3]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper/core' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper/core' Making check in contrib make[3]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper/contrib' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper/contrib' 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make[3]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/examples' make[2]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/examples' make[2]: Entering directory '/build/reproducible-path/clipper-2.1.20201109' make[2]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' make[1]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' rm -fr -- /tmp/dh-xdg-rundir-08dY_a5B create-stamp debian/debhelper-build-stamp dh_testroot "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_prep "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" rm -f -- debian/libclipper-dev.substvars debian/libclipper2.substvars debian/libclipper-doc.substvars rm -fr -- debian/.debhelper/generated/libclipper-dev/ debian/libclipper-dev/ debian/tmp/ debian/.debhelper/generated/libclipper2/ debian/libclipper2/ debian/.debhelper/generated/libclipper-doc/ debian/libclipper-doc/ dh_auto_install "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d /build/reproducible-path/clipper-2.1.20201109/debian/tmp make -j1 install DESTDIR=/build/reproducible-path/clipper-2.1.20201109/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/clipper-2.1.20201109' Making install in clipper make[2]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper' Making install in core make[3]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper/core' make[4]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper/core' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../../libtool --mode=install /usr/bin/install -c libclipper-core.la '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libclipper-core.so.2.0.1 /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-core.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so.2 || { rm -f libclipper-core.so.2 && ln -s libclipper-core.so.2.0.1 libclipper-core.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so || { rm -f libclipper-core.so && ln -s libclipper-core.so.2.0.1 libclipper-core.so; }; }) libtool: install: /usr/bin/install -c .libs/libclipper-core.lai /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-core.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/core' /usr/bin/install -c -m 644 atomsf.h container_types.h nxmap_operator.h cell.h coords.h ramachandran.h clipper_instance.h derivs.h resol_basisfn.h clipper_memory.h fftmap.h resol_fn.h clipper_message.h fftmap_sparse.h resol_targetfn.h clipper_precision.h hkl_compute.h rotation.h clipper_stats.h hkl_data.h spacegroup.h clipper_sysdep.h hkl_datatypes.h spacegroup_data.h clipper_test.h hkl_info.h symop.h clipper_types.h hkl_lookup.h clipper_util.h hkl_operators.h container.h map_interp.h xmap.h container_hkl.h map_utils.h container_map.h nxmap.h clipper_thread.h test_core.h '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/core' /usr/bin/install -c -m 644 test_data.h '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/core' make[4]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper/core' make[3]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper/core' Making install in contrib make[3]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper/contrib' make[4]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper/contrib' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../../libtool --mode=install /usr/bin/install -c libclipper-contrib.la '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libclipper-contrib.la' libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper/contrib; /bin/bash "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o libclipper-contrib.la -rpath /usr/lib/aarch64-linux-gnu convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o -L/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lclipper-core -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1 libtool: install: /usr/bin/install -c .libs/libclipper-contrib.so.2.0.1T /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-contrib.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so.2 || { rm -f libclipper-contrib.so.2 && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so || { rm -f libclipper-contrib.so && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so; }; }) libtool: install: /usr/bin/install -c .libs/libclipper-contrib.lai /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-contrib.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/contrib' /usr/bin/install -c -m 644 convolution_search.h mapfilter.h sfscale.h edcalc.h originmatch.h sfweight.h fffear.h sfcalc.h skeleton.h function_object_bases.h sfcalc_obs.h test_contrib.h '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/contrib' make[4]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper/contrib' make[3]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper/contrib' make[3]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper' make[4]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c mmdb/libclipper-mmdb.la minimol/libclipper-minimol.la phs/libclipper-phs.la cif/libclipper-cif.la ccp4/libclipper-ccp4.la cns/libclipper-cns.la fortran/libclipper-fortran.la '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'mmdb/libclipper-mmdb.la' libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/bash "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o mmdb/libclipper-mmdb.la -rpath /usr/lib/aarch64-linux-gnu mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o mmdb/.libs/clipper_mmdb.o -L/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lclipper-core -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1 libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.so.2.0.1T /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2 || { rm -f libclipper-mmdb.so.2 && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so || { rm -f libclipper-mmdb.so && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so; }; }) libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.lai /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-mmdb.la libtool: warning: relinking 'minimol/libclipper-minimol.la' libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/bash "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o minimol/libclipper-minimol.la -rpath /usr/lib/aarch64-linux-gnu minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o -L/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lclipper-core -lclipper-mmdb -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1 libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.so.2.0.1T /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-minimol.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so.2 || { rm -f libclipper-minimol.so.2 && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so || { rm -f libclipper-minimol.so && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so; }; }) libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.lai /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-minimol.la libtool: warning: relinking 'phs/libclipper-phs.la' libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/bash "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o phs/libclipper-phs.la -rpath /usr/lib/aarch64-linux-gnu phs/phs_io.lo core/libclipper-core.la -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o phs/.libs/phs_io.o -L/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lclipper-core -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1 libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.so.2.0.1T /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-phs.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so.2 || { rm -f libclipper-phs.so.2 && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so || { rm -f libclipper-phs.so && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so; }; }) libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.lai /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-phs.la libtool: warning: relinking 'cif/libclipper-cif.la' libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/bash "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o cif/libclipper-cif.la -rpath /usr/lib/aarch64-linux-gnu cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o cif/.libs/cif_data_io.o -L/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lclipper-core -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1 libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.so.2.0.1T /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-cif.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so.2 || { rm -f libclipper-cif.so.2 && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so || { rm -f libclipper-cif.so && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so; }; }) libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.lai /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-cif.la libtool: warning: relinking 'ccp4/libclipper-ccp4.la' libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/bash "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o ccp4/libclipper-ccp4.la -rpath /usr/lib/aarch64-linux-gnu ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o -L/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lclipper-core -lccp4c -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1 libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.so.2.0.1T /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2 || { rm -f libclipper-ccp4.so.2 && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so || { rm -f libclipper-ccp4.so && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so; }; }) libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.lai /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-ccp4.la libtool: warning: relinking 'cns/libclipper-cns.la' libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/bash "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o cns/libclipper-cns.la -rpath /usr/lib/aarch64-linux-gnu cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o -L/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lclipper-core -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1 libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.so.2.0.1T /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-cns.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so.2 || { rm -f libclipper-cns.so.2 && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so || { rm -f libclipper-cns.so && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so; }; }) libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.lai /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-cns.la libtool: warning: relinking 'fortran/libclipper-fortran.la' libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/bash "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o fortran/libclipper-fortran.la -rpath /usr/lib/aarch64-linux-gnu fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o fortran/.libs/f_interface.o -L/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lclipper-core -lclipper-contrib -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1 libtool: install: /usr/bin/install -c fortran/.libs/libclipper-fortran.so.2.0.1T /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-fortran.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so.2 || { rm -f libclipper-fortran.so.2 && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so || { rm -f libclipper-fortran.so && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so; }; }) libtool: install: /usr/bin/install -c fortran/.libs/libclipper-fortran.lai /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-fortran.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/ccp4' /usr/bin/install -c -m 644 ccp4/ccp4_map_io.h ccp4/ccp4_mtz_io.h ccp4/ccp4_mtz_types.h ccp4/ccp4_utils.h '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/ccp4' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/cif' /usr/bin/install -c -m 644 cif/cif_data_io.h '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/cif' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/cns' /usr/bin/install -c -m 644 cns/cns_hkl_io.h cns/cns_map_io.h '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/cns' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/minimol' /usr/bin/install -c -m 644 minimol/container_minimol.h minimol/minimol_data.h minimol/minimol_seq.h minimol/minimol.h minimol/minimol_io.h minimol/minimol_utils.h '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/minimol' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/mmdb' /usr/bin/install -c -m 644 mmdb/clipper_mmdb.h '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/mmdb' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/phs' /usr/bin/install -c -m 644 phs/phs_io.h '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/phs' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper' /usr/bin/install -c -m 644 clipper-ccp4.h clipper-contrib.h clipper-phs.h clipper-cctbx.h clipper-minimol.h clipper.h clipper-cif.h clipper-mmdb.h minimal-clipper-hkl.h clipper-cns.h minimal-clipper-map.h '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper' make[4]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper' make[3]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper' make[2]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper' Making install in examples make[2]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/examples' make[3]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/examples' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/examples' make[2]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/examples' make[2]: Entering directory '/build/reproducible-path/clipper-2.1.20201109' make[3]: Entering directory '/build/reproducible-path/clipper-2.1.20201109' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 clipper.pc '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' make[3]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' make[2]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' make[1]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' dh_install "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-dev//usr/include cp --reflink=auto -a debian/tmp/usr/include/clipper debian/libclipper-dev//usr/include/ install -m0755 -d debian/libclipper-dev//usr/lib/aarch64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-cif.so debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-cns.so debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-contrib.so debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-core.so debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-fortran.so debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-minimol.so debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-phs.so debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig debian/libclipper-dev//usr/lib/aarch64-linux-gnu/ install -m0755 -d debian/libclipper2//usr/lib/aarch64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so.2 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so.2.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-cif.so.2 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-cif.so.2.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-cns.so.2 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-cns.so.2.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-contrib.so.2 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-contrib.so.2.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-core.so.2 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-core.so.2.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-fortran.so.2 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-fortran.so.2.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-minimol.so.2 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-minimol.so.2.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so.2 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so.2.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-phs.so.2 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-phs.so.2.0.1 debian/libclipper2//usr/lib/aarch64-linux-gnu/ dh_installdocs "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-dev/usr/share/doc/libclipper-dev install -p -m0644 debian/copyright debian/libclipper-dev/usr/share/doc/libclipper-dev/copyright install -m0755 -d debian/libclipper2/usr/share/doc/libclipper2 install -p -m0644 debian/copyright debian/libclipper2/usr/share/doc/libclipper2/copyright install -m0755 -d debian/libclipper-doc/usr/share/doc/libclipper-doc install -m0755 -d debian/libclipper-doc/usr/share/doc/libclipper-dev cp --reflink=auto -a ./debian/index.html debian/libclipper-doc/usr/share/doc/libclipper-dev cd './doc/html/..' && find 'html' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/reproducible-path/clipper-2.1.20201109/debian/libclipper-doc/usr/share/doc/libclipper-dev chmod -R u\+rw,go=rX debian/libclipper-doc/usr/share/doc install -p -m0644 debian/copyright debian/libclipper-doc/usr/share/doc/libclipper-doc/copyright install -m0755 -d debian/libclipper-doc/usr/share/doc-base/ install -p -m0644 debian/libclipper-doc.doc-base debian/libclipper-doc/usr/share/doc-base/libclipper-doc.clipper dh_installchangelogs "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper2/usr/share/doc/libclipper2 install -p -m0644 debian/.debhelper/generated/libclipper2/dh_installchangelogs.dch.trimmed debian/libclipper2/usr/share/doc/libclipper2/changelog.Debian install -p -m0644 ./ChangeLog debian/libclipper2/usr/share/doc/libclipper2/changelog install -m0755 -d debian/libclipper-dev/usr/share/doc/libclipper-dev install -p -m0644 debian/.debhelper/generated/libclipper-dev/dh_installchangelogs.dch.trimmed debian/libclipper-dev/usr/share/doc/libclipper-dev/changelog.Debian install -p -m0644 ./ChangeLog debian/libclipper-dev/usr/share/doc/libclipper-dev/changelog install -m0755 -d debian/libclipper-doc/usr/share/doc/libclipper-doc install -p -m0644 debian/.debhelper/generated/libclipper-doc/dh_installchangelogs.dch.trimmed debian/libclipper-doc/usr/share/doc/libclipper-doc/changelog.Debian install -p -m0644 ./ChangeLog debian/libclipper-doc/usr/share/doc/libclipper-doc/changelog dh_installexamples "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/c2test.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/ccad.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/cctbxtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/ciftophs.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/cmaplocal.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/cns2mtz.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/cnstest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/diffmap.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/ffttest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/fomvar.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/ftndemo_lib.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/maketestdata.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/maphist.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/maptest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/memtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/mmtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/mtzcut.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/mtziotest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/mtzmissing.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/mtztest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/octest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/phstest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/reftest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/reftest2.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/rfltest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/sftest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/sgtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/sktest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/symtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/cns2mtz.h debian/libclipper-doc/usr/share/doc/libclipper-dev/examples dh_installsystemduser "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_lintian "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper2/usr/share/lintian/overrides install -p -m0644 debian/libclipper2.lintian-overrides debian/libclipper2/usr/share/lintian/overrides/libclipper2 dh_perl "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_link "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" rm -f debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so ln -s libclipper-ccp4.so.2.0.1 debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so rm -f debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-cif.so ln -s libclipper-cif.so.2.0.1 debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-cif.so rm -f debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-cns.so ln -s libclipper-cns.so.2.0.1 debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-cns.so rm -f debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-contrib.so ln -s libclipper-contrib.so.2.0.1 debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-contrib.so rm -f debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-core.so ln -s libclipper-core.so.2.0.1 debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-core.so rm -f debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-fortran.so ln -s libclipper-fortran.so.2.0.1 debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-fortran.so rm -f debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-minimol.so ln -s libclipper-minimol.so.2.0.1 debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-minimol.so rm -f debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so ln -s libclipper-mmdb.so.2.0.1 debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so rm -f debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-phs.so ln -s libclipper-phs.so.2.0.1 debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-phs.so rm -f debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so.2 ln -s libclipper-ccp4.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so.2 rm -f debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cif.so.2 ln -s libclipper-cif.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cif.so.2 rm -f debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cns.so.2 ln -s libclipper-cns.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cns.so.2 rm -f debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-contrib.so.2 ln -s libclipper-contrib.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-contrib.so.2 rm -f debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-core.so.2 ln -s libclipper-core.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-core.so.2 rm -f debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-fortran.so.2 ln -s libclipper-fortran.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-fortran.so.2 rm -f debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-minimol.so.2 ln -s libclipper-minimol.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-minimol.so.2 rm -f debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so.2 ln -s libclipper-mmdb.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so.2 rm -f debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-phs.so.2 ln -s libclipper-phs.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-phs.so.2 dh_strip_nondeterminism "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" Using 1687186854 as canonical time Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NX__operator.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__warn.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__info.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__generic.png using 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File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1String.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Spgr__descr_1_1Symop__codes.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Spgr__descr.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Spacegroup.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Resolution__ordinal.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1ResolutionFn__nonlinear.png using File::StripNondeterminism::handlers::png Normalizing 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File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Test__core.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Test__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__sigmaa__omegaa.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__sigmaa.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleLogI1I2.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleLogF1F2.png using File::StripNondeterminism::handlers::png Normalizing 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File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_bd.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_b.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_ad.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_a.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/sync_on.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/sync_off.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/splitbard.png using File::StripNondeterminism::handlers::png Normalizing 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Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/map_p1.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/include.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/hkl_objs.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/hierarchy.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/closed.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1Phi__fom.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1I__sigI__ano.png using File::StripNondeterminism::handlers::png Normalizing 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debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__orth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__map.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__grid.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__frac.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Container.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Cell__descr.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Cell.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CXmap.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CSpacegroup.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CResolution.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CNXmap__operator.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CNXmap.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Range__sampling.png using File::StripNondeterminism::handlers::png Normalizing 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File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__operator.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base_1_1Map__reference__index.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base_1_1Map__reference__coord.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base_1_1Map__reference__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grad__frac.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Generic__ordinal.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__sparse__p1__xh.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__sparse__p1__hx.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__sparse__p1__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__p1.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Datatype__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__orth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__map.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__frac.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__reci__orth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__index.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__coord.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__data__cacheobj.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__data__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__data.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grid__sampling.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grid__range.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grid.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grad__orth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grad__map.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CHKL__info.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CHKL__data.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CGrid__sampling.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CCell.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__spline.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__log__gaussian.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__log__aniso__gaussian.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__linear.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__gaussian.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__expcubic.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__binner.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__aniso__gaussian.png using File::StripNondeterminism::handlers::png dh_compress "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" cd debian/libclipper2 cd debian/libclipper-dev cd debian/libclipper-doc chmod a-x usr/share/doc/libclipper-doc/changelog usr/share/doc/libclipper-doc/changelog.Debian chmod a-x usr/share/doc/libclipper2/changelog usr/share/doc/libclipper2/changelog.Debian chmod a-x usr/share/doc/libclipper-dev/changelog usr/share/doc/libclipper-dev/changelog.Debian gzip -9nf usr/share/doc/libclipper-doc/changelog usr/share/doc/libclipper-doc/changelog.Debian gzip -9nf usr/share/doc/libclipper2/changelog usr/share/doc/libclipper2/changelog.Debian gzip -9nf usr/share/doc/libclipper-dev/changelog usr/share/doc/libclipper-dev/changelog.Debian cd '/build/reproducible-path/clipper-2.1.20201109' cd '/build/reproducible-path/clipper-2.1.20201109' cd '/build/reproducible-path/clipper-2.1.20201109' dh_fixperms "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" find debian/libclipper-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libclipper2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libclipper-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libclipper-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libclipper-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libclipper2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libclipper-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libclipper2/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_dwz -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper2/usr/lib/debug/.dwz/aarch64-linux-gnu dwz -mdebian/libclipper2/usr/lib/debug/.dwz/aarch64-linux-gnu/libclipper2.debug -M/usr/lib/debug/.dwz/aarch64-linux-gnu/libclipper2.debug -- debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cif.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cns.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-contrib.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-core.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-fortran.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-minimol.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-phs.so.2.0.1 objcopy --compress-debug-sections debian/libclipper2/usr/lib/debug/.dwz/aarch64-linux-gnu/libclipper2.debug chmod 0644 -- debian/libclipper2/usr/lib/debug/.dwz/aarch64-linux-gnu/libclipper2.debug dh_strip -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/57 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-core.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/57/4dd7a311f91f061d92e89dcc1aad834d41cbd9.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/57/4dd7a311f91f061d92e89dcc1aad834d41cbd9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-core.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/57/4dd7a311f91f061d92e89dcc1aad834d41cbd9.debug debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-core.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/e3 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-contrib.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/e3/d2ed0798d3ac5a495c4a9e252884c16b5f0d22.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/e3/d2ed0798d3ac5a495c4a9e252884c16b5f0d22.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-contrib.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/e3/d2ed0798d3ac5a495c4a9e252884c16b5f0d22.debug debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-contrib.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/c2 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-minimol.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/c2/0105888f86ed0a2d12d2f6508aec3d2c05eb86.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/c2/0105888f86ed0a2d12d2f6508aec3d2c05eb86.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-minimol.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/c2/0105888f86ed0a2d12d2f6508aec3d2c05eb86.debug debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-minimol.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/f6 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/f6/9d63c2fac3ec30068b3d9645927920bb9a8c25.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/f6/9d63c2fac3ec30068b3d9645927920bb9a8c25.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/f6/9d63c2fac3ec30068b3d9645927920bb9a8c25.debug debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/90 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-phs.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/90/749be728b220fa68bb975e6c1bb4904ebd5534.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/90/749be728b220fa68bb975e6c1bb4904ebd5534.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-phs.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/90/749be728b220fa68bb975e6c1bb4904ebd5534.debug debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-phs.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/3e objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cns.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/3e/aa76732bdac90d1ca8e371e3ab9dccaab9468c.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/3e/aa76732bdac90d1ca8e371e3ab9dccaab9468c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cns.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/3e/aa76732bdac90d1ca8e371e3ab9dccaab9468c.debug debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cns.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/8b objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/8b/a7c9b7740dd57119aab5562d390ed2191f417f.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/8b/a7c9b7740dd57119aab5562d390ed2191f417f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/8b/a7c9b7740dd57119aab5562d390ed2191f417f.debug debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/55 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cif.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/55/323d9257653fe93cf32dab82c7840d3ae008a3.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/55/323d9257653fe93cf32dab82c7840d3ae008a3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cif.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/55/323d9257653fe93cf32dab82c7840d3ae008a3.debug debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cif.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/e5 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-fortran.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/e5/3c5d57a29f1ae741f9f7e9c33f26fa71c18b67.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/e5/3c5d57a29f1ae741f9f7e9c33f26fa71c18b67.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-fortran.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/e5/3c5d57a29f1ae741f9f7e9c33f26fa71c18b67.debug debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-fortran.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libclipper2/usr/lib/debug/.dwz/aarch64-linux-gnu debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/libclipper2/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/libclipper2/usr/lib/debug install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/share/doc ln -s libclipper2 debian/.debhelper/libclipper2/dbgsym-root/usr/share/doc/libclipper2-dbgsym install -m0755 -d debian/.debhelper/libclipper2 dh_makeshlibs -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" rm -f debian/libclipper-dev/DEBIAN/shlibs rm -f debian/libclipper2/DEBIAN/shlibs install -m0755 -d debian/libclipper2/DEBIAN echo "libclipper-ccp4 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-cif 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-cns 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-contrib 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-core 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-fortran 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-minimol 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-mmdb 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-phs 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs chmod 0644 -- debian/libclipper2/DEBIAN/shlibs mv debian/.debhelper/generated/libclipper2/triggers.new debian/.debhelper/generated/libclipper2/triggers dh_shlibdeps -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper2/DEBIAN dpkg-shlibdeps -Tdebian/libclipper2.substvars debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-core.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-contrib.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-minimol.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-phs.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cns.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cif.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-fortran.so.2.0.1 dh_installdeb "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-dev/DEBIAN install -m0755 -d debian/libclipper2/DEBIAN install -p -m0644 debian/.debhelper/generated/libclipper2/triggers debian/libclipper2/DEBIAN/triggers install -m0755 -d debian/libclipper-doc/DEBIAN dh_gencontrol "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-dev/DEBIAN echo misc:Depends= >> debian/libclipper-dev.substvars echo misc:Pre-Depends= >> debian/libclipper-dev.substvars dpkg-gencontrol -plibclipper-dev -ldebian/changelog -Tdebian/libclipper-dev.substvars -cdebian/control -Pdebian/libclipper-dev install -m0755 -d debian/libclipper2/DEBIAN echo misc:Depends= >> debian/libclipper2.substvars echo misc:Pre-Depends= >> debian/libclipper2.substvars install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/DEBIAN dpkg-gencontrol -plibclipper2 -ldebian/changelog -Tdebian/libclipper2.substvars -cdebian/control -Pdebian/.debhelper/libclipper2/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libclipper2-dbgsym "-DDepends=libclipper2 (= \${binary:Version})" "-DDescription=debug symbols for libclipper2" "-DBuild-Ids=3eaa76732bdac90d1ca8e371e3ab9dccaab9468c 55323d9257653fe93cf32dab82c7840d3ae008a3 574dd7a311f91f061d92e89dcc1aad834d41cbd9 8ba7c9b7740dd57119aab5562d390ed2191f417f 90749be728b220fa68bb975e6c1bb4904ebd5534 c20105888f86ed0a2d12d2f6508aec3d2c05eb86 e3d2ed0798d3ac5a495c4a9e252884c16b5f0d22 e53c5d57a29f1ae741f9f7e9c33f26fa71c18b67 f69d63c2fac3ec30068b3d9645927920bb9a8c25" -DSection=debug "-DReplaces=libclipper2-dbg (<< 2.1.20160809-1~)" "-DBreaks=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-doc/DEBIAN echo misc:Depends= >> debian/libclipper-doc.substvars echo misc:Pre-Depends= >> debian/libclipper-doc.substvars dpkg-gencontrol -plibclipper-doc -ldebian/changelog -Tdebian/libclipper-doc.substvars -cdebian/control -Pdebian/libclipper-doc chmod 0644 -- debian/libclipper-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibclipper2 -ldebian/changelog -Tdebian/libclipper2.substvars -cdebian/control -Pdebian/libclipper2 chmod 0644 -- debian/libclipper-doc/DEBIAN/control chmod 0644 -- debian/libclipper2/DEBIAN/control dh_md5sums "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-dev/DEBIAN install -m0755 -d debian/libclipper-doc/DEBIAN install -m0755 -d debian/libclipper2/DEBIAN cd debian/libclipper-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libclipper2 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libclipper-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libclipper-dev/DEBIAN/md5sums chmod 0644 -- debian/libclipper2/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/DEBIAN cd debian/.debhelper/libclipper2/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libclipper-doc/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/DEBIAN/md5sums dh_builddeb "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dpkg-deb --root-owner-group --build debian/libclipper-dev .. dpkg-deb --root-owner-group --build debian/.debhelper/libclipper2/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libclipper2 .. dpkg-deb --root-owner-group --build debian/libclipper-doc .. dpkg-deb: building package 'libclipper-dev' in '../libclipper-dev_2.1.20201109-2_arm64.deb'. dpkg-deb: building package 'libclipper2-dbgsym' in '../libclipper2-dbgsym_2.1.20201109-2_arm64.deb'. dpkg-deb: building package 'libclipper-doc' in '../libclipper-doc_2.1.20201109-2_all.deb'. dpkg-deb: building package 'libclipper2' in '../libclipper2_2.1.20201109-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../clipper_2.1.20201109-2_arm64.buildinfo dpkg-genchanges --build=binary -O../clipper_2.1.20201109-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/410750 and its subdirectories I: Current time: Wed Jul 2 15:38:53 -12 2025 I: pbuilder-time-stamp: 1751513933 Thu May 30 21:15:56 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink02-arm64.debian.net. Thu May 30 21:15:56 UTC 2024 I: Preparing to do remote build '2' on codethink02-arm64.debian.net. Thu May 30 21:17:57 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. Thu May 30 21:17:58 UTC 2024 I: clipper_2.1.20201109-2_arm64.changes: Format: 1.8 Date: Mon, 19 Jun 2023 11:00:54 -0400 Source: clipper Binary: libclipper-dev libclipper-doc libclipper2 libclipper2-dbgsym Architecture: arm64 all Version: 2.1.20201109-2 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Andrius Merkys Description: libclipper-dev - object oriented development kit for crystallographic computing libclipper-doc - doxygen generated documentation for libclipper libclipper2 - object oriented library for crystallographic computing Changes: clipper (2.1.20201109-2) unstable; urgency=medium . * Switch debian/watch to HTTP site as FTP seems down and SSL certificate has expired. Checksums-Sha1: 7094c7cd5569b00bd2cdc64b9c7bdbbbe67758ed 7502 clipper_2.1.20201109-2_arm64.buildinfo 319c006ed2bc1559e93b9e31728a36387e3cdeec 82120 libclipper-dev_2.1.20201109-2_arm64.deb 705fde89d62cf248ec153e4fcc1d46f8f66c987b 685840 libclipper-doc_2.1.20201109-2_all.deb 2de78c0c6c21f29e4c37c02dc973e1258e2cb7d5 7893524 libclipper2-dbgsym_2.1.20201109-2_arm64.deb 4424fe69a2225f96f0d4a4585dd0d7098b152a5f 1094324 libclipper2_2.1.20201109-2_arm64.deb Checksums-Sha256: 8368d98c97d69b44832030dd5f57918c7529fbb1304b2ef00f7040dd69d561a0 7502 clipper_2.1.20201109-2_arm64.buildinfo 8954d314ddff15b597a1e2555f1c671d69b7034ba28a55db850db61fa3ae644e 82120 libclipper-dev_2.1.20201109-2_arm64.deb cc4d8f0681f2b2c725f4424335eb714cd23fc5c2eb590418dbd06327aec8d7b6 685840 libclipper-doc_2.1.20201109-2_all.deb 06fd2fdc0e7c54dcd07494430ea12e8ed37ba4d25102d83eaa8f7ac1267d217a 7893524 libclipper2-dbgsym_2.1.20201109-2_arm64.deb 85569e267ddff450042c9ad1d2dd7c4af6a5b5157438259e50b01cdfd27ba1a3 1094324 libclipper2_2.1.20201109-2_arm64.deb Files: ae0c3582b450030dd10a153d5fb36bad 7502 science optional clipper_2.1.20201109-2_arm64.buildinfo 6842e1c3746f548d3629b344810bb357 82120 libdevel optional libclipper-dev_2.1.20201109-2_arm64.deb 3a85f165ae021f0e16de2a36a904c929 685840 doc optional libclipper-doc_2.1.20201109-2_all.deb 4cb9672774afb13719a9f6586c4df87e 7893524 debug optional libclipper2-dbgsym_2.1.20201109-2_arm64.deb a4652295c08d284f99c896d355e97beb 1094324 libs optional libclipper2_2.1.20201109-2_arm64.deb Thu May 30 21:17:59 UTC 2024 I: diffoscope 268 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_9-20448.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.oXjUjU6Y/clipper_2.1.20201109-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.oXjUjU6Y/clipper_2.1.20201109-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.oXjUjU6Y/clipper_2.1.20201109-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.oXjUjU6Y/b1/clipper_2.1.20201109-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.oXjUjU6Y/b2/clipper_2.1.20201109-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.476s) 0.476s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.122s) 0.122s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 815ms CPU time consumed: 815ms Thu May 30 21:18:00 UTC 2024 I: diffoscope 268 found no differences in the changes files, and a .buildinfo file also exists. Thu May 30 21:18:00 UTC 2024 I: clipper from unstable built successfully and reproducibly on arm64. Thu May 30 21:18:01 UTC 2024 I: Submitting .buildinfo files to external archives: Thu May 30 21:18:01 UTC 2024 I: Submitting 12K b1/clipper_2.1.20201109-2_arm64.buildinfo.asc Thu May 30 21:18:02 UTC 2024 I: Submitting 12K b2/clipper_2.1.20201109-2_arm64.buildinfo.asc Thu May 30 21:18:04 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 30 21:18:04 UTC 2024 I: Done submitting .buildinfo files. Thu May 30 21:18:04 UTC 2024 I: Removing signed clipper_2.1.20201109-2_arm64.buildinfo.asc files: removed './b1/clipper_2.1.20201109-2_arm64.buildinfo.asc' removed './b2/clipper_2.1.20201109-2_arm64.buildinfo.asc'