Mon Dec 9 12:04:10 UTC 2024 I: starting to build ariba/unstable/arm64 on jenkins on '2024-12-09 12:03' Mon Dec 9 12:04:10 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_6/69839/console.log Mon Dec 9 12:04:10 UTC 2024 I: Downloading source for unstable/ariba=2.14.7+ds-5 --2024-12-09 12:04:10-- http://deb.debian.org/debian/pool/main/a/ariba/ariba_2.14.7%2bds-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2316 (2.3K) [text/prs.lines.tag] Saving to: ‘ariba_2.14.7+ds-5.dsc’ 0K .. 100% 282M=0s 2024-12-09 12:04:10 (282 MB/s) - ‘ariba_2.14.7+ds-5.dsc’ saved [2316/2316] Mon Dec 9 12:04:10 UTC 2024 I: ariba_2.14.7+ds-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ariba Binary: ariba Architecture: any Version: 2.14.7+ds-5 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss , Étienne Mollier Homepage: https://github.com/sanger-pathogens/ariba Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/ariba Vcs-Git: https://salsa.debian.org/med-team/ariba.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-biopython, python3-all-dev, python3-dendropy, python3-setuptools, python3-pymummer, python3-pysam, python3-pytest, python3-bs4, python3-matplotlib, python3-tk, bowtie2, cd-hit, mash, libminimap-dev, libfml-dev, mummer, fastaq, help2man, asciidoctor, spades [amd64] Package-List: ariba deb science optional arch=any Checksums-Sha1: 9dbd8c5a23a1dc7349406f1b692b6f648f704674 1919824 ariba_2.14.7+ds.orig.tar.xz 1076ae7dae2004ee0dcd1ccd7b9f7ec4b47d4ed9 10972 ariba_2.14.7+ds-5.debian.tar.xz Checksums-Sha256: 17cab969952233e110a58515cb9b2752d58c9a8edc9e930891d07a1a3c2f3fbb 1919824 ariba_2.14.7+ds.orig.tar.xz 758152eb72a5cf4b02ca02ec068e0f3e8b209e99bb1de79ab49150ab5fac9911 10972 ariba_2.14.7+ds-5.debian.tar.xz Files: 36818f9fdc447f1c7064089115d41417 1919824 ariba_2.14.7+ds.orig.tar.xz 3f47ac2cac83758def47ba27b431d18e 10972 ariba_2.14.7+ds-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmdWk5URHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHBTBAAgVuoROcPbic6zreAHYw5+cfrCUv3ndh7 64Z55G7gKu+VwEnYhCS/e3VtaTtqQFNuztaeqw1tyhoC+PmpWhHziaY3Ez9JMbtv kh8tyBF8elAC7agiYgTiPZL0Ok/8E5gaOXjxroZpDY6vh3JDukyxRflE3paZPXPu OMVhgq16x9outujsIvGupWb2ZMT/XRm10fG2weYzItQ2xeEw1a6SB1feUbpSYBRt tW2M2iqsgeQUOHQYDjYZRIVNG3gdMHVuYBiyequ5PZAA9soBgGj58UVuvXaKl9aU KI4J+IpKiusKA7V6ABacfBoA1k+STsrXu/0vlXCj7r+60CrXSmxokOhc+WcJhTRn AqgetH0OvmEHeRydMjDrlrguOGZ12BHRNvaC8werhn5895rZAZEKoFHRKCvuStBk rNfs95YfEGgAlt7ebNhUiCh85a8Dugt89MuFuI4TP/GXvXCO81W1xpoxOrYlRY0o bDlwllLm/wpbuf8dMBK6EpcP5BcxJZOXjvqLvSbSLgNjsjCgcnn6uOFcNeSpqxNB mKQkGhWWcwXtTy4ei5j6VqhZ6bk/YRsfmRiKPRdarWWKbRf9ecMm3Fzuba9l1J/Q DLM+mYO2tbpmm3p5AZIYG9RSvEV2AjBXyIywVrkzJmQcE0KiQsDnypOX3mmMbWLz FAeSlNx9CpI= =95MB -----END PGP SIGNATURE----- Mon Dec 9 12:04:10 UTC 2024 I: Checking whether the package is not for us Mon Dec 9 12:04:11 UTC 2024 I: Starting 1st build on remote node codethink04-arm64.debian.net. Mon Dec 9 12:04:11 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Mon Dec 9 12:10:18 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Dec 9 00:04:13 -12 2024 I: pbuilder-time-stamp: 1733745853 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ariba_2.14.7+ds-5.dsc] I: copying [./ariba_2.14.7+ds.orig.tar.xz] I: copying [./ariba_2.14.7+ds-5.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Dec 9 06:52:05 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ariba_2.14.7+ds-5.dsc: no acceptable signature found dpkg-source: info: extracting ariba in ariba-2.14.7+ds dpkg-source: info: unpacking ariba_2.14.7+ds.orig.tar.xz dpkg-source: info: unpacking ariba_2.14.7+ds-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs_for_extension.patch dpkg-source: info: applying use_bwa_compatible_fermi-lite.patch dpkg-source: info: applying add-testdata.patch dpkg-source: info: applying disable-tests-with-internet-access.patch dpkg-source: info: applying support-pymummer-0.11.patch dpkg-source: info: applying run-debian-spades-wrapper.patch dpkg-source: info: applying python3.12.patch dpkg-source: info: applying python3.12_syntax_warning.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1201556/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='29f27467d787498887488d5d8c18b42d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1201556' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rqQ4fZLT/pbuilderrc_Z3JD --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rqQ4fZLT/b1 --logfile b1/build.log ariba_2.14.7+ds-5.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1201556/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-biopython, python3-all-dev, python3-dendropy, python3-setuptools, python3-pymummer, python3-pysam, python3-pytest, python3-bs4, python3-matplotlib, python3-tk, bowtie2, cd-hit, mash, libminimap-dev, libfml-dev, mummer, fastaq, help2man, asciidoctor dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20083 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dendropy; however: Package python3-dendropy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pymummer; however: Package python3-pymummer is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-bs4; however: Package python3-bs4 is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-tk; however: Package python3-tk is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on cd-hit; however: Package cd-hit is not installed. pbuilder-satisfydepends-dummy depends on mash; however: Package mash is not installed. pbuilder-satisfydepends-dummy depends on libminimap-dev; however: Package libminimap-dev is not installed. pbuilder-satisfydepends-dummy depends on libfml-dev; however: Package libfml-dev is not installed. pbuilder-satisfydepends-dummy depends on mummer; however: Package mummer is not installed. pbuilder-satisfydepends-dummy depends on fastaq; however: Package fastaq is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on asciidoctor; however: Package asciidoctor is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: asciidoctor{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bowtie2{a} bsdextrautils{a} ca-certificates{a} cd-hit{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} fastaq{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} fonts-urw-base35{a} gawk{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcapnp-1.0.1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfml-dev{a} libfml0{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgsl28{a} libgslcblas0{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libminimap-dev{a} libminimap0{a} libmurmurhash2{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libruby{a} libruby3.1t64{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsigsegv2{a} libssh2-1t64{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} libyaml-0-2{a} m4{a} man-db{a} mash{a} media-types{a} mummer{a} netbase{a} openssl{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-autocommand{a} python3-biopython{a} python3-brotli{a} python3-bs4{a} python3-cairo{a} python3-chardet{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dendropy{a} python3-dev{a} python3-fonttools{a} python3-freetype{a} python3-fs{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pluggy{a} python3-pymummer{a} python3-pyparsing{a} python3-pysam{a} python3-pytest{a} python3-reportlab{a} python3-rlpycairo{a} python3-scipy{a} python3-setuptools{a} python3-soupsieve{a} python3-sympy{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.12-tk{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} python3.13-tk{a} rake{a} readline-common{a} ruby{a} ruby-asciidoctor{a} ruby-net-telnet{a} ruby-rubygems{a} ruby-sdbm{a} ruby-webrick{a} ruby-xmlrpc{a} ruby3.1{a} rubygems-integration{a} samtools{a} sensible-utils{a} sgml-base{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-dejavu-extra fonts-lato isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-cssselect python3-html5lib python3-olefile python3-pooch python3-pygments shared-mime-info wget xdg-user-dirs zip 0 packages upgraded, 231 newly installed, 0 to remove and 0 not upgraded. Need to get 149 MB of archives. After unpacking 681 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libsigsegv2 arm64 2.14-1+b2 [34.3 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 gawk arm64 1:5.2.1-2+b2 [644 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.8-1 [808 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.8-1 [1930 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.12.7-1 [26.8 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024b-4 [256 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2~rc1-2 [23.7 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 17 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.8-1 [1905 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.8-1 [677 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.12.7-1 [9708 B] Get: 25 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.12.7-1 [27.8 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.1-1 [850 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.1-1 [1988 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 sgml-base all 1.31 [15.4 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.3.2-2 [1347 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-6 [1130 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-12 [91.4 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 rubygems-integration all 1.18 [6704 B] Get: 42 http://deb.debian.org/debian unstable/main arm64 rake all 13.2.1-1 [65.2 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 ruby-net-telnet all 0.2.0-1 [13.1 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 ruby-webrick all 1.8.1-1 [51.4 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 ruby-xmlrpc all 0.3.3-2 [24.4 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libruby arm64 1:3.1+nmu1 [4664 B] Get: 47 http://deb.debian.org/debian unstable/main arm64 ruby-sdbm arm64 1.0.0-5+b5 [14.6 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libedit2 arm64 3.1-20240808-1 [89.2 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libncurses6 arm64 6.5-2+b1 [96.1 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-1+b2 [49.3 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libruby3.1t64 arm64 3.1.2-8.4 [5266 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 ruby3.1 arm64 3.1.2-8.4 [664 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 ruby-rubygems all 3.4.20-1 [309 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 ruby arm64 1:3.1+nmu1 [5584 B] Get: 55 http://deb.debian.org/debian unstable/main arm64 ruby-asciidoctor all 2.0.23-1 [214 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 asciidoctor all 2.0.23-1 [88.7 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [982 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libfontenc1 arm64 1:1.1.8-1+b1 [22.5 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 73 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-1.1+b1 [318 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-1.1+b1 [387 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1+b2 [27.2 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b2 [51.6 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b2 [17.1 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libtk8.6 arm64 8.6.15-1 [738 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7+b1 [538 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 blt arm64 2.5.3+dfsg-7+b1 [6344 B] Get: 87 http://deb.debian.org/debian unstable/main arm64 bowtie2 arm64 2.5.4-1 [1405 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 cd-hit arm64 4.8.1-4+b1 [509 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-8 [517 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 95 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 109 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.2.0-1 [731 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20241024 [109 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.11.0-1 [331 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 libhts3t64 arm64 1.20+ds-2 [420 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 samtools arm64 1.20-3+b1 [629 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 fastaq all 3.17.0-9 [47.8 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 fonts-lyx all 2.4.2.1-1 [190 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 help2man arm64 1.49.3+b1 [198 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.0-4 [98.7 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 libcapnp-1.0.1 arm64 1.0.1-4+b1 [1296 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 libfml0 arm64 0.1+git20190320.b499514-1+b2 [65.9 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 libfml-dev arm64 0.1+git20190320.b499514-1+b2 [80.0 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-9 [361 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.82.2-3 [1411 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 libgslcblas0 arm64 2.8+dfsg-5 [84.1 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 libgsl28 arm64 2.8+dfsg-5 [881 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 10.1.0-1 [442 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 155 http://deb.debian.org/debian unstable/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 157 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.0-4 [1812 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b2 [25.6 kB] Get: 159 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 160 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 161 http://deb.debian.org/debian unstable/main arm64 libminimap0 arm64 0.2-8+b2 [21.1 kB] Get: 162 http://deb.debian.org/debian unstable/main arm64 libminimap-dev arm64 0.2-8+b2 [32.5 kB] Get: 163 http://deb.debian.org/debian unstable/main arm64 libmurmurhash2 arm64 1.6-1+b1 [6592 B] Get: 164 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.0-2+b4 [185 kB] Get: 165 http://deb.debian.org/debian unstable/main arm64 libpython3.12t64 arm64 3.12.8-1 [1985 kB] Get: 166 http://deb.debian.org/debian unstable/main arm64 libpython3.12-dev arm64 3.12.8-1 [4815 kB] Get: 167 http://deb.debian.org/debian unstable/main arm64 libpython3-dev arm64 3.12.7-1 [9980 B] Get: 168 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.1-1 [1912 kB] Get: 169 http://deb.debian.org/debian unstable/main arm64 libpython3.13 arm64 3.13.1-1 [1969 kB] Get: 170 http://deb.debian.org/debian unstable/main arm64 libpython3.13-dev arm64 3.13.1-1 [4706 kB] Get: 171 http://deb.debian.org/debian unstable/main arm64 libpython3-all-dev arm64 3.12.7-1 [1072 B] Get: 172 http://deb.debian.org/debian unstable/main arm64 libqhull-r8.0 arm64 2020.2-6+b2 [229 kB] Get: 173 http://deb.debian.org/debian unstable/main arm64 libraqm0 arm64 0.10.1-1+b2 [13.8 kB] Get: 174 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.4.0-0.1+b1 [112 kB] Get: 175 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.4.0-0.1+b1 [268 kB] Get: 176 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 177 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.4.0-0.1+b1 [110 kB] Get: 178 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.4.0-0.1+b1 [122 kB] Get: 179 http://deb.debian.org/debian unstable/main arm64 libxslt1.1 arm64 1.1.35-1.1+b1 [222 kB] Get: 180 http://deb.debian.org/debian unstable/main arm64 mash arm64 2.3+dfsg-6+b1 [169 kB] Get: 181 http://deb.debian.org/debian unstable/main arm64 mummer arm64 3.23+dfsg-8+b1 [643 kB] Get: 182 http://deb.debian.org/debian unstable/main arm64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 183 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.1-1 [740 kB] Get: 184 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.12.7-1 [1052 B] Get: 185 http://deb.debian.org/debian unstable/main arm64 python3.12-dev arm64 3.12.8-1 [506 kB] Get: 186 http://deb.debian.org/debian unstable/main arm64 python3-dev arm64 3.12.7-1 [26.1 kB] Get: 187 http://deb.debian.org/debian unstable/main arm64 python3.13-dev arm64 3.13.1-1 [504 kB] Get: 188 http://deb.debian.org/debian unstable/main arm64 python3-all-dev arm64 3.12.7-1 [1076 B] Get: 189 http://deb.debian.org/debian unstable/main arm64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 190 http://deb.debian.org/debian unstable/main arm64 python3-attr all 24.2.0-1 [68.4 kB] Get: 191 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:1.26.4+ds-12 [3816 kB] Get: 192 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 193 http://deb.debian.org/debian unstable/main arm64 python3.12-tk arm64 3.12.8-1 [111 kB] Get: 194 http://deb.debian.org/debian unstable/main arm64 python3.13-tk arm64 3.13.1-1 [101 kB] Get: 195 http://deb.debian.org/debian unstable/main arm64 python3-tk arm64 3.12.7-1 [9444 B] Get: 196 http://deb.debian.org/debian unstable/main arm64 python3-pil.imagetk arm64 10.4.0-1+b1 [79.9 kB] Get: 197 http://deb.debian.org/debian unstable/main arm64 python3-pil arm64 10.4.0-1+b1 [498 kB] Get: 198 http://deb.debian.org/debian unstable/main arm64 python3-cairo arm64 1.26.1-2+b1 [130 kB] Get: 199 http://deb.debian.org/debian unstable/main arm64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 200 http://deb.debian.org/debian unstable/main arm64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 201 http://deb.debian.org/debian unstable/main arm64 python3-reportlab all 4.2.5-1 [1117 kB] Get: 202 http://deb.debian.org/debian unstable/main arm64 xml-core all 0.19 [20.1 kB] Get: 203 http://deb.debian.org/debian unstable/main arm64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 204 http://deb.debian.org/debian unstable/main arm64 python3-biopython arm64 1.84+dfsg-4+b1 [1644 kB] Get: 205 http://deb.debian.org/debian unstable/main arm64 python3-brotli arm64 1.1.0-2+b6 [306 kB] Get: 206 http://deb.debian.org/debian unstable/main arm64 python3-soupsieve all 2.6-1 [38.3 kB] Get: 207 http://deb.debian.org/debian unstable/main arm64 python3-bs4 all 4.12.3-3 [133 kB] Get: 208 http://deb.debian.org/debian unstable/main arm64 python3-contourpy arm64 1.3.1-1 [237 kB] Get: 209 http://deb.debian.org/debian unstable/main arm64 python3-cycler all 0.12.1-1 [9496 B] Get: 210 http://deb.debian.org/debian unstable/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 211 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 212 http://deb.debian.org/debian unstable/main arm64 python3-dendropy all 4.6.1-2 [277 kB] Get: 213 http://deb.debian.org/debian unstable/main arm64 python3-tz all 2024.1-2 [30.9 kB] Get: 214 http://deb.debian.org/debian unstable/main arm64 python3-fs all 2.4.16-5 [95.1 kB] Get: 215 http://deb.debian.org/debian unstable/main arm64 python3-lxml arm64 5.3.0-1+b1 [1433 kB] Get: 216 http://deb.debian.org/debian unstable/main arm64 python3-lz4 arm64 4.4.0+dfsg-1 [25.6 kB] Get: 217 http://deb.debian.org/debian unstable/main arm64 python3-scipy arm64 1.14.1-3 [18.5 MB] Get: 218 http://deb.debian.org/debian unstable/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 219 http://deb.debian.org/debian unstable/main arm64 python3-sympy all 1.13.3-1 [4147 kB] Get: 220 http://deb.debian.org/debian unstable/main arm64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 221 http://deb.debian.org/debian unstable/main arm64 unicode-data all 15.1.0-1 [8547 kB] Get: 222 http://deb.debian.org/debian unstable/main arm64 python3-fonttools arm64 4.55.0-3 [1500 kB] Get: 223 http://deb.debian.org/debian unstable/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 224 http://deb.debian.org/debian unstable/main arm64 python3-kiwisolver arm64 1.4.7-2+b1 [71.6 kB] Get: 225 http://deb.debian.org/debian unstable/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 226 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 227 http://deb.debian.org/debian unstable/main arm64 python3-matplotlib arm64 3.8.3-3+b1 [5586 kB] Get: 228 http://deb.debian.org/debian unstable/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 229 http://deb.debian.org/debian unstable/main arm64 python3-pymummer all 0.11.0-4 [18.0 kB] Get: 230 http://deb.debian.org/debian unstable/main arm64 python3-pysam arm64 0.22.1+ds-2+b3 [3903 kB] Get: 231 http://deb.debian.org/debian unstable/main arm64 python3-pytest all 8.3.4-1 [250 kB] Fetched 149 MB in 1s (183 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20083 files and directories currently installed.) Preparing to unpack .../readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../libsigsegv2_2.14-1+b2_arm64.deb ... Unpacking libsigsegv2:arm64 (2.14-1+b2) ... Setting up readline-common (8.2-5) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up libsigsegv2:arm64 (2.14-1+b2) ... Selecting previously unselected package gawk. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20125 files and directories currently installed.) Preparing to unpack .../gawk_1%3a5.2.1-2+b2_arm64.deb ... Unpacking gawk (1:5.2.1-2+b2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.12-minimal:arm64. Preparing to unpack .../libpython3.12-minimal_3.12.8-1_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.8-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-1_arm64.deb ... Unpacking python3.12-minimal (3.12.8-1) ... Setting up libpython3.12-minimal:arm64 (3.12.8-1) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20649 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_arm64.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.2~rc1-2_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2~rc1-2) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../13-libpython3.12-stdlib_3.12.8-1_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.8-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../14-python3.12_3.12.8-1_arm64.deb ... Unpacking python3.12 (3.12.8-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../15-libpython3-stdlib_3.12.7-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21680 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.7-1_arm64.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../001-libpython3.13-minimal_3.13.1-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.1-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../002-python3.13-minimal_3.13.1-1_arm64.deb ... Unpacking python3.13-minimal (3.13.1-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../003-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.3.2-2_arm64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../007-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../008-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../009-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../010-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../011-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../012-groff-base_1.23.0-6_arm64.deb ... Unpacking groff-base (1.23.0-6) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../013-bsdextrautils_2.40.2-12_arm64.deb ... Unpacking bsdextrautils (2.40.2-12) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../014-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../015-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package rubygems-integration. Preparing to unpack .../016-rubygems-integration_1.18_all.deb ... Unpacking rubygems-integration (1.18) ... Selecting previously unselected package rake. Preparing to unpack .../017-rake_13.2.1-1_all.deb ... Unpacking rake (13.2.1-1) ... Selecting previously unselected package ruby-net-telnet. Preparing to unpack .../018-ruby-net-telnet_0.2.0-1_all.deb ... Unpacking ruby-net-telnet (0.2.0-1) ... Selecting previously unselected package ruby-webrick. Preparing to unpack .../019-ruby-webrick_1.8.1-1_all.deb ... Unpacking ruby-webrick (1.8.1-1) ... Selecting previously unselected package ruby-xmlrpc. Preparing to unpack .../020-ruby-xmlrpc_0.3.3-2_all.deb ... Unpacking ruby-xmlrpc (0.3.3-2) ... Selecting previously unselected package libruby:arm64. Preparing to unpack .../021-libruby_1%3a3.1+nmu1_arm64.deb ... Unpacking libruby:arm64 (1:3.1+nmu1) ... Selecting previously unselected package ruby-sdbm:arm64. Preparing to unpack .../022-ruby-sdbm_1.0.0-5+b5_arm64.deb ... Unpacking ruby-sdbm:arm64 (1.0.0-5+b5) ... Selecting previously unselected package libedit2:arm64. Preparing to unpack .../023-libedit2_3.1-20240808-1_arm64.deb ... Unpacking libedit2:arm64 (3.1-20240808-1) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../024-libncurses6_6.5-2+b1_arm64.deb ... Unpacking libncurses6:arm64 (6.5-2+b1) ... Selecting previously unselected package libyaml-0-2:arm64. Preparing to unpack .../025-libyaml-0-2_0.2.5-1+b2_arm64.deb ... Unpacking libyaml-0-2:arm64 (0.2.5-1+b2) ... Selecting previously unselected package libruby3.1t64:arm64. Preparing to unpack .../026-libruby3.1t64_3.1.2-8.4_arm64.deb ... Unpacking libruby3.1t64:arm64 (3.1.2-8.4) ... Selecting previously unselected package ruby3.1. Preparing to unpack .../027-ruby3.1_3.1.2-8.4_arm64.deb ... Unpacking ruby3.1 (3.1.2-8.4) ... Selecting previously unselected package ruby-rubygems. Preparing to unpack .../028-ruby-rubygems_3.4.20-1_all.deb ... Unpacking ruby-rubygems (3.4.20-1) ... Selecting previously unselected package ruby. Preparing to unpack .../029-ruby_1%3a3.1+nmu1_arm64.deb ... Unpacking ruby (1:3.1+nmu1) ... Selecting previously unselected package ruby-asciidoctor. Preparing to unpack .../030-ruby-asciidoctor_2.0.23-1_all.deb ... Unpacking ruby-asciidoctor (2.0.23-1) ... Selecting previously unselected package asciidoctor. Preparing to unpack .../031-asciidoctor_2.0.23-1_all.deb ... Unpacking asciidoctor (2.0.23-1) ... Selecting previously unselected package m4. Preparing to unpack .../032-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../033-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../034-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../035-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../036-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libtcl8.6:arm64. Preparing to unpack .../037-libtcl8.6_8.6.15+dfsg-2_arm64.deb ... Unpacking libtcl8.6:arm64 (8.6.15+dfsg-2) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../038-libbrotli1_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libpng16-16t64:arm64. Preparing to unpack .../039-libpng16-16t64_1.6.44-2_arm64.deb ... Unpacking libpng16-16t64:arm64 (1.6.44-2) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../040-libfreetype6_2.13.3+dfsg-1_arm64.deb ... Unpacking libfreetype6:arm64 (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../041-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../042-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package libfontenc1:arm64. Preparing to unpack .../043-libfontenc1_1%3a1.1.8-1+b1_arm64.deb ... Unpacking libfontenc1:arm64 (1:1.1.8-1+b1) ... Selecting previously unselected package x11-common. Preparing to unpack .../044-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../045-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../046-xfonts-utils_1%3a7.7+7_arm64.deb ... Unpacking xfonts-utils (1:7.7+7) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../047-fonts-urw-base35_20200910-8_all.deb ... Unpacking fonts-urw-base35 (20200910-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../048-fontconfig-config_2.15.0-1.1+b1_arm64.deb ... Unpacking fontconfig-config (2.15.0-1.1+b1) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../049-libfontconfig1_2.15.0-1.1+b1_arm64.deb ... Unpacking libfontconfig1:arm64 (2.15.0-1.1+b1) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../050-libxau6_1%3a1.0.11-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.11-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../051-libxdmcp6_1%3a1.1.5-1_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.5-1) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../052-libxcb1_1.17.0-2+b1_arm64.deb ... Unpacking libxcb1:arm64 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../053-libx11-data_2%3a1.8.10-2_all.deb ... Unpacking libx11-data (2:1.8.10-2) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../054-libx11-6_2%3a1.8.10-2_arm64.deb ... Unpacking libx11-6:arm64 (2:1.8.10-2) ... Selecting previously unselected package libxrender1:arm64. Preparing to unpack .../055-libxrender1_1%3a0.9.10-1.1+b2_arm64.deb ... Unpacking libxrender1:arm64 (1:0.9.10-1.1+b2) ... Selecting previously unselected package libxft2:arm64. Preparing to unpack .../056-libxft2_2.3.6-1+b2_arm64.deb ... Unpacking libxft2:arm64 (2.3.6-1+b2) ... Selecting previously unselected package libxext6:arm64. Preparing to unpack .../057-libxext6_2%3a1.3.4-1+b2_arm64.deb ... Unpacking libxext6:arm64 (2:1.3.4-1+b2) ... Selecting previously unselected package libxss1:arm64. Preparing to unpack .../058-libxss1_1%3a1.2.3-1+b2_arm64.deb ... Unpacking libxss1:arm64 (1:1.2.3-1+b2) ... Selecting previously unselected package libtk8.6:arm64. Preparing to unpack .../059-libtk8.6_8.6.15-1_arm64.deb ... Unpacking libtk8.6:arm64 (8.6.15-1) ... Selecting previously unselected package tk8.6-blt2.5. Preparing to unpack .../060-tk8.6-blt2.5_2.5.3+dfsg-7+b1_arm64.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7+b1) ... Selecting previously unselected package blt. Preparing to unpack .../061-blt_2.5.3+dfsg-7+b1_arm64.deb ... Unpacking blt (2.5.3+dfsg-7+b1) ... Selecting previously unselected package bowtie2. Preparing to unpack .../062-bowtie2_2.5.4-1_arm64.deb ... Unpacking bowtie2 (2.5.4-1) ... Selecting previously unselected package cd-hit. Preparing to unpack .../063-cd-hit_4.8.1-4+b1_arm64.deb ... Unpacking cd-hit (4.8.1-4+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../064-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../065-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../066-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../067-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../068-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../069-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../070-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../071-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../072-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../073-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../074-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../075-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../076-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../077-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../078-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../079-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../080-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../081-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../082-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../083-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../084-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../085-python3-pkg-resources_75.2.0-1_all.deb ... Unpacking python3-pkg-resources (75.2.0-1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../086-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../087-python3-zipp_3.21.0-1_all.deb ... Unpacking python3-zipp (3.21.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../088-python3-setuptools_75.2.0-1_all.deb ... Unpacking python3-setuptools (75.2.0-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../089-dh-python_6.20241024_all.deb ... Unpacking dh-python (6.20241024) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../090-libsasl2-modules-db_2.1.28+dfsg1-8_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../091-libsasl2-2_2.1.28+dfsg1-8_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:arm64. Preparing to unpack .../092-libldap-2.5-0_2.5.18+dfsg-3+b1_arm64.deb ... Unpacking libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../093-libnghttp2-14_1.64.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:arm64. Preparing to unpack .../094-libnghttp3-9_1.6.0-2_arm64.deb ... Unpacking libnghttp3-9:arm64 (1.6.0-2) ... Selecting previously unselected package libngtcp2-16:arm64. Preparing to unpack .../095-libngtcp2-16_1.9.1-1_arm64.deb ... Unpacking libngtcp2-16:arm64 (1.9.1-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:arm64. Preparing to unpack .../096-libngtcp2-crypto-gnutls8_1.9.1-1_arm64.deb ... Unpacking libngtcp2-crypto-gnutls8:arm64 (1.9.1-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../097-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../098-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../099-libssh2-1t64_1.11.1-1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:arm64. Preparing to unpack .../100-libcurl3t64-gnutls_8.11.0-1_arm64.deb ... Unpacking libcurl3t64-gnutls:arm64 (8.11.0-1) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../101-libdeflate0_1.22-1_arm64.deb ... Unpacking libdeflate0:arm64 (1.22-1) ... Selecting previously unselected package libhtscodecs2:arm64. Preparing to unpack .../102-libhtscodecs2_1.6.1-1_arm64.deb ... Unpacking libhtscodecs2:arm64 (1.6.1-1) ... Selecting previously unselected package libhts3t64:arm64. Preparing to unpack .../103-libhts3t64_1.20+ds-2_arm64.deb ... Unpacking libhts3t64:arm64 (1.20+ds-2) ... Selecting previously unselected package samtools. Preparing to unpack .../104-samtools_1.20-3+b1_arm64.deb ... Unpacking samtools (1.20-3+b1) ... Selecting previously unselected package fastaq. Preparing to unpack .../105-fastaq_3.17.0-9_all.deb ... Unpacking fastaq (3.17.0-9) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../106-fonts-lyx_2.4.2.1-1_all.deb ... Unpacking fonts-lyx (2.4.2.1-1) ... Selecting previously unselected package help2man. Preparing to unpack .../107-help2man_1.49.3+b1_arm64.deb ... Unpacking help2man (1.49.3+b1) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../108-libblas3_3.12.0-4_arm64.deb ... Unpacking libblas3:arm64 (3.12.0-4) ... Selecting previously unselected package libpixman-1-0:arm64. Preparing to unpack .../109-libpixman-1-0_0.44.0-3_arm64.deb ... Unpacking libpixman-1-0:arm64 (0.44.0-3) ... Selecting previously unselected package libxcb-render0:arm64. Preparing to unpack .../110-libxcb-render0_1.17.0-2+b1_arm64.deb ... Unpacking libxcb-render0:arm64 (1.17.0-2+b1) ... Selecting previously unselected package libxcb-shm0:arm64. Preparing to unpack .../111-libxcb-shm0_1.17.0-2+b1_arm64.deb ... Unpacking libxcb-shm0:arm64 (1.17.0-2+b1) ... Selecting previously unselected package libcairo2:arm64. Preparing to unpack .../112-libcairo2_1.18.2-2_arm64.deb ... Unpacking libcairo2:arm64 (1.18.2-2) ... Selecting previously unselected package libcapnp-1.0.1:arm64. Preparing to unpack .../113-libcapnp-1.0.1_1.0.1-4+b1_arm64.deb ... Unpacking libcapnp-1.0.1:arm64 (1.0.1-4+b1) ... Selecting previously unselected package libexpat1-dev:arm64. Preparing to unpack .../114-libexpat1-dev_2.6.4-1_arm64.deb ... Unpacking libexpat1-dev:arm64 (2.6.4-1) ... Selecting previously unselected package libfml0:arm64. Preparing to unpack .../115-libfml0_0.1+git20190320.b499514-1+b2_arm64.deb ... Unpacking libfml0:arm64 (0.1+git20190320.b499514-1+b2) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../116-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libfml-dev:arm64. Preparing to unpack .../117-libfml-dev_0.1+git20190320.b499514-1+b2_arm64.deb ... Unpacking libfml-dev:arm64 (0.1+git20190320.b499514-1+b2) ... Selecting previously unselected package libfribidi0:arm64. Preparing to unpack .../118-libfribidi0_1.0.15-1_arm64.deb ... Unpacking libfribidi0:arm64 (1.0.15-1) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../119-libgfortran5_14.2.0-9_arm64.deb ... Unpacking libgfortran5:arm64 (14.2.0-9) ... Selecting previously unselected package libglib2.0-0t64:arm64. Preparing to unpack .../120-libglib2.0-0t64_2.82.2-3_arm64.deb ... Unpacking libglib2.0-0t64:arm64 (2.82.2-3) ... Selecting previously unselected package libgraphite2-3:arm64. Preparing to unpack .../121-libgraphite2-3_1.3.14-2+b1_arm64.deb ... Unpacking libgraphite2-3:arm64 (1.3.14-2+b1) ... Selecting previously unselected package libgslcblas0:arm64. Preparing to unpack .../122-libgslcblas0_2.8+dfsg-5_arm64.deb ... Unpacking libgslcblas0:arm64 (2.8+dfsg-5) ... Selecting previously unselected package libgsl28:arm64. Preparing to unpack .../123-libgsl28_2.8+dfsg-5_arm64.deb ... Unpacking libgsl28:arm64 (2.8+dfsg-5) ... Selecting previously unselected package libharfbuzz0b:arm64. Preparing to unpack .../124-libharfbuzz0b_10.1.0-1_arm64.deb ... Unpacking libharfbuzz0b:arm64 (10.1.0-1) ... Selecting previously unselected package libimagequant0:arm64. Preparing to unpack .../125-libimagequant0_2.18.0-1+b2_arm64.deb ... Unpacking libimagequant0:arm64 (2.18.0-1+b2) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../126-libjbig0_2.1-6.1+b2_arm64.deb ... Unpacking libjbig0:arm64 (2.1-6.1+b2) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../127-libjpeg62-turbo_1%3a2.1.5-3+b1_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../128-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../129-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../130-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../131-libjs-sphinxdoc_7.4.7-4_all.deb ... Unpacking libjs-sphinxdoc (7.4.7-4) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../132-liblapack3_3.12.0-4_arm64.deb ... Unpacking liblapack3:arm64 (3.12.0-4) ... Selecting previously unselected package liblbfgsb0:arm64. Preparing to unpack .../133-liblbfgsb0_3.0+dfsg.4-1+b2_arm64.deb ... Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1+b2) ... Selecting previously unselected package liblcms2-2:arm64. Preparing to unpack .../134-liblcms2-2_2.16-2_arm64.deb ... Unpacking liblcms2-2:arm64 (2.16-2) ... Selecting previously unselected package liblerc4:arm64. Preparing to unpack .../135-liblerc4_4.0.0+ds-5_arm64.deb ... Unpacking liblerc4:arm64 (4.0.0+ds-5) ... Selecting previously unselected package libminimap0:arm64. Preparing to unpack .../136-libminimap0_0.2-8+b2_arm64.deb ... Unpacking libminimap0:arm64 (0.2-8+b2) ... Selecting previously unselected package libminimap-dev:arm64. Preparing to unpack .../137-libminimap-dev_0.2-8+b2_arm64.deb ... Unpacking libminimap-dev:arm64 (0.2-8+b2) ... Selecting previously unselected package libmurmurhash2:arm64. Preparing to unpack .../138-libmurmurhash2_1.6-1+b1_arm64.deb ... Unpacking libmurmurhash2:arm64 (1.6-1+b1) ... Selecting previously unselected package libopenjp2-7:arm64. Preparing to unpack .../139-libopenjp2-7_2.5.0-2+b4_arm64.deb ... Unpacking libopenjp2-7:arm64 (2.5.0-2+b4) ... Selecting previously unselected package libpython3.12t64:arm64. Preparing to unpack .../140-libpython3.12t64_3.12.8-1_arm64.deb ... Unpacking libpython3.12t64:arm64 (3.12.8-1) ... Selecting previously unselected package libpython3.12-dev:arm64. Preparing to unpack .../141-libpython3.12-dev_3.12.8-1_arm64.deb ... Unpacking libpython3.12-dev:arm64 (3.12.8-1) ... Selecting previously unselected package libpython3-dev:arm64. Preparing to unpack .../142-libpython3-dev_3.12.7-1_arm64.deb ... Unpacking libpython3-dev:arm64 (3.12.7-1) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../143-libpython3.13-stdlib_3.13.1-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.1-1) ... Selecting previously unselected package libpython3.13:arm64. Preparing to unpack .../144-libpython3.13_3.13.1-1_arm64.deb ... Unpacking libpython3.13:arm64 (3.13.1-1) ... Selecting previously unselected package libpython3.13-dev:arm64. Preparing to unpack .../145-libpython3.13-dev_3.13.1-1_arm64.deb ... Unpacking libpython3.13-dev:arm64 (3.13.1-1) ... Selecting previously unselected package libpython3-all-dev:arm64. Preparing to unpack .../146-libpython3-all-dev_3.12.7-1_arm64.deb ... Unpacking libpython3-all-dev:arm64 (3.12.7-1) ... Selecting previously unselected package libqhull-r8.0:arm64. Preparing to unpack .../147-libqhull-r8.0_2020.2-6+b2_arm64.deb ... Unpacking libqhull-r8.0:arm64 (2020.2-6+b2) ... Selecting previously unselected package libraqm0:arm64. Preparing to unpack .../148-libraqm0_0.10.1-1+b2_arm64.deb ... Unpacking libraqm0:arm64 (0.10.1-1+b2) ... Selecting previously unselected package libsharpyuv0:arm64. Preparing to unpack .../149-libsharpyuv0_1.4.0-0.1+b1_arm64.deb ... Unpacking libsharpyuv0:arm64 (1.4.0-0.1+b1) ... Selecting previously unselected package libwebp7:arm64. Preparing to unpack .../150-libwebp7_1.4.0-0.1+b1_arm64.deb ... Unpacking libwebp7:arm64 (1.4.0-0.1+b1) ... Selecting previously unselected package libtiff6:arm64. Preparing to unpack .../151-libtiff6_4.5.1+git230720-5_arm64.deb ... Unpacking libtiff6:arm64 (4.5.1+git230720-5) ... Selecting previously unselected package libwebpdemux2:arm64. Preparing to unpack .../152-libwebpdemux2_1.4.0-0.1+b1_arm64.deb ... Unpacking libwebpdemux2:arm64 (1.4.0-0.1+b1) ... Selecting previously unselected package libwebpmux3:arm64. Preparing to unpack .../153-libwebpmux3_1.4.0-0.1+b1_arm64.deb ... Unpacking libwebpmux3:arm64 (1.4.0-0.1+b1) ... Selecting previously unselected package libxslt1.1:arm64. Preparing to unpack .../154-libxslt1.1_1.1.35-1.1+b1_arm64.deb ... Unpacking libxslt1.1:arm64 (1.1.35-1.1+b1) ... Selecting previously unselected package mash. Preparing to unpack .../155-mash_2.3+dfsg-6+b1_arm64.deb ... Unpacking mash (2.3+dfsg-6+b1) ... Selecting previously unselected package mummer. Preparing to unpack .../156-mummer_3.23+dfsg-8+b1_arm64.deb ... Unpacking mummer (3.23+dfsg-8+b1) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../157-python-matplotlib-data_3.8.3-3_all.deb ... Unpacking python-matplotlib-data (3.8.3-3) ... Selecting previously unselected package python3.13. Preparing to unpack .../158-python3.13_3.13.1-1_arm64.deb ... Unpacking python3.13 (3.13.1-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../159-python3-all_3.12.7-1_arm64.deb ... Unpacking python3-all (3.12.7-1) ... Selecting previously unselected package python3.12-dev. Preparing to unpack .../160-python3.12-dev_3.12.8-1_arm64.deb ... Unpacking python3.12-dev (3.12.8-1) ... Selecting previously unselected package python3-dev. Preparing to unpack .../161-python3-dev_3.12.7-1_arm64.deb ... Unpacking python3-dev (3.12.7-1) ... Selecting previously unselected package python3.13-dev. Preparing to unpack .../162-python3.13-dev_3.13.1-1_arm64.deb ... Unpacking python3.13-dev (3.13.1-1) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../163-python3-all-dev_3.12.7-1_arm64.deb ... Unpacking python3-all-dev (3.12.7-1) ... Selecting previously unselected package python3-appdirs. Preparing to unpack .../164-python3-appdirs_1.4.4-4_all.deb ... Unpacking python3-appdirs (1.4.4-4) ... Selecting previously unselected package python3-attr. Preparing to unpack .../165-python3-attr_24.2.0-1_all.deb ... Unpacking python3-attr (24.2.0-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../166-python3-numpy_1%3a1.26.4+ds-12_arm64.deb ... Unpacking python3-numpy (1:1.26.4+ds-12) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../167-python3-chardet_5.2.0+dfsg-1_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-1) ... Selecting previously unselected package python3.12-tk. Preparing to unpack .../168-python3.12-tk_3.12.8-1_arm64.deb ... Unpacking python3.12-tk (3.12.8-1) ... Selecting previously unselected package python3.13-tk. Preparing to unpack .../169-python3.13-tk_3.13.1-1_arm64.deb ... Unpacking python3.13-tk (3.13.1-1) ... Selecting previously unselected package python3-tk:arm64. Preparing to unpack .../170-python3-tk_3.12.7-1_arm64.deb ... Unpacking python3-tk:arm64 (3.12.7-1) ... Selecting previously unselected package python3-pil.imagetk:arm64. Preparing to unpack .../171-python3-pil.imagetk_10.4.0-1+b1_arm64.deb ... Unpacking python3-pil.imagetk:arm64 (10.4.0-1+b1) ... Selecting previously unselected package python3-pil:arm64. Preparing to unpack .../172-python3-pil_10.4.0-1+b1_arm64.deb ... Unpacking python3-pil:arm64 (10.4.0-1+b1) ... Selecting previously unselected package python3-cairo. Preparing to unpack .../173-python3-cairo_1.26.1-2+b1_arm64.deb ... Unpacking python3-cairo (1.26.1-2+b1) ... Selecting previously unselected package python3-freetype. Preparing to unpack .../174-python3-freetype_2.5.1-1_all.deb ... Unpacking python3-freetype (2.5.1-1) ... Selecting previously unselected package python3-rlpycairo. Preparing to unpack .../175-python3-rlpycairo_0.3.0-3_all.deb ... Unpacking python3-rlpycairo (0.3.0-3) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../176-python3-reportlab_4.2.5-1_all.deb ... Unpacking python3-reportlab (4.2.5-1) ... Selecting previously unselected package xml-core. Preparing to unpack .../177-xml-core_0.19_all.deb ... Unpacking xml-core (0.19) ... Selecting previously unselected package w3c-sgml-lib. Preparing to unpack .../178-w3c-sgml-lib_1.3-3_all.deb ... Unpacking w3c-sgml-lib (1.3-3) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../179-python3-biopython_1.84+dfsg-4+b1_arm64.deb ... Unpacking python3-biopython (1.84+dfsg-4+b1) ... Selecting previously unselected package python3-brotli. Preparing to unpack .../180-python3-brotli_1.1.0-2+b6_arm64.deb ... Unpacking python3-brotli (1.1.0-2+b6) ... Selecting previously unselected package python3-soupsieve. Preparing to unpack .../181-python3-soupsieve_2.6-1_all.deb ... Unpacking python3-soupsieve (2.6-1) ... Selecting previously unselected package python3-bs4. Preparing to unpack .../182-python3-bs4_4.12.3-3_all.deb ... Unpacking python3-bs4 (4.12.3-3) ... Selecting previously unselected package python3-contourpy. Preparing to unpack .../183-python3-contourpy_1.3.1-1_arm64.deb ... Unpacking python3-contourpy (1.3.1-1) ... Selecting previously unselected package python3-cycler. Preparing to unpack .../184-python3-cycler_0.12.1-1_all.deb ... Unpacking python3-cycler (0.12.1-1) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../185-python3-dateutil_2.9.0-3_all.deb ... Unpacking python3-dateutil (2.9.0-3) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../186-python3-decorator_5.1.1-5_all.deb ... Unpacking python3-decorator (5.1.1-5) ... Selecting previously unselected package python3-dendropy. Preparing to unpack .../187-python3-dendropy_4.6.1-2_all.deb ... Unpacking python3-dendropy (4.6.1-2) ... Selecting previously unselected package python3-tz. Preparing to unpack .../188-python3-tz_2024.1-2_all.deb ... Unpacking python3-tz (2024.1-2) ... Selecting previously unselected package python3-fs. Preparing to unpack .../189-python3-fs_2.4.16-5_all.deb ... Unpacking python3-fs (2.4.16-5) ... Selecting previously unselected package python3-lxml:arm64. Preparing to unpack .../190-python3-lxml_5.3.0-1+b1_arm64.deb ... Unpacking python3-lxml:arm64 (5.3.0-1+b1) ... Selecting previously unselected package python3-lz4. Preparing to unpack .../191-python3-lz4_4.4.0+dfsg-1_arm64.deb ... Unpacking python3-lz4 (4.4.0+dfsg-1) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../192-python3-scipy_1.14.1-3_arm64.deb ... Unpacking python3-scipy (1.14.1-3) ... Selecting previously unselected package python3-mpmath. Preparing to unpack .../193-python3-mpmath_1.3.0-1_all.deb ... Unpacking python3-mpmath (1.3.0-1) ... Selecting previously unselected package python3-sympy. Preparing to unpack .../194-python3-sympy_1.13.3-1_all.deb ... Unpacking python3-sympy (1.13.3-1) ... Selecting previously unselected package python3-ufolib2. Preparing to unpack .../195-python3-ufolib2_0.17.0+dfsg1-1_all.deb ... Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ... Selecting previously unselected package unicode-data. Preparing to unpack .../196-unicode-data_15.1.0-1_all.deb ... Unpacking unicode-data (15.1.0-1) ... Selecting previously unselected package python3-fonttools. Preparing to unpack .../197-python3-fonttools_4.55.0-3_arm64.deb ... Unpacking python3-fonttools (4.55.0-3) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../198-python3-iniconfig_1.1.1-2_all.deb ... Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../199-python3-kiwisolver_1.4.7-2+b1_arm64.deb ... Unpacking python3-kiwisolver (1.4.7-2+b1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../200-python3-pyparsing_3.1.2-1_all.deb ... Unpacking python3-pyparsing (3.1.2-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../201-python3-packaging_24.2-1_all.deb ... Unpacking python3-packaging (24.2-1) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../202-python3-matplotlib_3.8.3-3+b1_arm64.deb ... Unpacking python3-matplotlib (3.8.3-3+b1) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../203-python3-pluggy_1.5.0-1_all.deb ... Unpacking python3-pluggy (1.5.0-1) ... Selecting previously unselected package python3-pymummer. Preparing to unpack .../204-python3-pymummer_0.11.0-4_all.deb ... Unpacking python3-pymummer (0.11.0-4) ... Selecting previously unselected package python3-pysam. Preparing to unpack .../205-python3-pysam_0.22.1+ds-2+b3_arm64.deb ... Unpacking python3-pysam (0.22.1+ds-2+b3) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../206-python3-pytest_8.3.4-1_all.deb ... Unpacking python3-pytest (8.3.4-1) ... Setting up cd-hit (4.8.1-4+b1) ... Setting up libhtscodecs2:arm64 (1.6.1-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libgraphite2-3:arm64 (1.3.14-2+b1) ... Setting up liblcms2-2:arm64 (2.16-2) ... Setting up libpixman-1-0:arm64 (0.44.0-3) ... Setting up libsharpyuv0:arm64 (1.4.0-0.1+b1) ... Setting up libxau6:arm64 (1:1.0.11-1) ... Setting up libxdmcp6:arm64 (1:1.1.5-1) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up libxcb1:arm64 (1.17.0-2+b1) ... Setting up libicu72:arm64 (72.1-5+b1) ... Setting up liblerc4:arm64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.40.2-12) ... Setting up libgslcblas0:arm64 (2.8+dfsg-5) ... Setting up libmurmurhash2:arm64 (1.6-1+b1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libcapnp-1.0.1:arm64 (1.0.1-4+b1) ... Setting up gawk (1:5.2.1-2+b2) ... Setting up libxcb-render0:arm64 (1.17.0-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:arm64 (0.2.5-1+b2) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up fonts-lyx (2.4.2.1-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:arm64 (1.1.0-2+b6) ... Setting up libedit2:arm64 (3.1-20240808-1) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:arm64 (1.64.0-1) ... Setting up libdeflate0:arm64 (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libqhull-r8.0:arm64 (2020.2-6+b2) ... Setting up libxcb-shm0:arm64 (1.17.0-2+b1) ... Setting up libcom-err2:arm64 (1.47.2~rc1-2) ... Setting up file (1:5.45-3+b1) ... Setting up libfml0:arm64 (0.1+git20190320.b499514-1+b2) ... Setting up libjbig0:arm64 (2.1-6.1+b2) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Dec 9 12:04:47 UTC 2024. Universal Time is now: Mon Dec 9 12:04:47 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up libpython3.13-minimal:arm64 (3.13.1-1) ... Setting up libminimap0:arm64 (0.2-8+b2) ... Setting up libfontenc1:arm64 (1:1.1.8-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:arm64 (2.82.2-3) ... No schema files found: doing nothing. Setting up libblas3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.6.4-1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libncurses6:arm64 (6.5-2+b1) ... Setting up ruby-net-telnet (0.2.0-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:arm64 (1.0.15-1) ... Setting up libimagequant0:arm64 (2.18.0-1+b2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.44-2) ... Setting up libtcl8.6:arm64 (8.6.15+dfsg-2) ... Setting up autopoint (0.22.5-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Setting up libgfortran5:arm64 (14.2.0-9) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:arm64 (1.6.0-2) ... Setting up libwebp7:arm64 (1.4.0-0.1+b1) ... Setting up ruby-webrick (1.8.1-1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:arm64 (4.5.1+git230720-5) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up mummer (3.23+dfsg-8+b1) ... Setting up libopenjp2-7:arm64 (2.5.0-2+b4) ... Setting up python3.13-minimal (3.13.1-1) ... Setting up libx11-6:arm64 (2:1.8.10-2) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:arm64 (1.9.1-1) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libgsl28:arm64 (2.8+dfsg-5) ... Setting up python-matplotlib-data (3.8.3-3) ... Setting up openssl (3.3.2-2) ... Setting up libwebpmux3:arm64 (1.4.0-0.1+b1) ... Setting up libpython3.13-stdlib:arm64 (3.13.1-1) ... Setting up ruby-xmlrpc (0.3.3-2) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.9.1-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libpython3.13:arm64 (3.13.1-1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libfml-dev:arm64 (0.1+git20190320.b499514-1+b2) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b2) ... Setting up libtool (2.4.7-8) ... Setting up python3.13 (3.13.1-1) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libwebpdemux2:arm64 (1.4.0-0.1+b1) ... Setting up libxext6:arm64 (2:1.3.4-1+b2) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3+b1) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libpython3.13-dev:arm64 (3.13.1-1) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up mash (2.3+dfsg-6+b1) ... Setting up libminimap-dev:arm64 (0.2-8+b2) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-6) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:arm64 (1.1.35-1.1+b1) ... Setting up libharfbuzz0b:arm64 (10.1.0-1) ... Setting up libxss1:arm64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:arm64 (2.15.0-1.1+b1) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1+b2) ... Setting up libxft2:arm64 (2.3.6-1+b2) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up python3.13-dev (3.13.1-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.15-1) ... Setting up python3.12-tk (3.12.8-1) ... Setting up libcurl3t64-gnutls:arm64 (8.11.0-1) ... Setting up rubygems-integration (1.18) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:arm64 (1.18.2-2) ... Setting up python3.13-tk (3.13.1-1) ... Setting up libraqm0:arm64 (0.10.1-1+b2) ... Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up libhts3t64:arm64 (1.20+ds-2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7+b1) ... Setting up libpython3.12-stdlib:arm64 (3.12.8-1) ... Setting up blt (2.5.3+dfsg-7+b1) ... Setting up python3.12 (3.12.8-1) ... Setting up debhelper (13.20) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up samtools (1.20-3+b1) ... Setting up libpython3.12t64:arm64 (3.12.8-1) ... Setting up libpython3-stdlib:arm64 (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up libpython3.12-dev:arm64 (3.12.8-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-tz (2024.1-2) ... Setting up bowtie2 (2.5.4-1) ... Setting up python3-pil:arm64 (10.4.0-1+b1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.2-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-brotli (1.1.0-2+b6) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.7-2+b1) ... Setting up python3.12-dev (3.12.8-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-lxml:arm64 (5.3.0-1+b1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-dendropy (4.6.1-2) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-soupsieve (2.6-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.13.3-1) ... Setting up python3-attr (24.2.0-1) ... Setting up python3-pysam (0.22.1+ds-2+b3) ... Setting up libpython3-dev:arm64 (3.12.7-1) ... Setting up python3-cairo (1.26.1-2+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-lz4 (4.4.0+dfsg-1) ... Setting up python3-pytest (8.3.4-1) ... Setting up fastaq (3.17.0-9) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.12.7-1) ... Setting up python3-tk:arm64 (3.12.7-1) ... Setting up python3-bs4 (4.12.3-3) ... Setting up python3-pymummer (0.11.0-4) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pil.imagetk:arm64 (10.4.0-1+b1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up libpython3-all-dev:arm64 (3.12.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.12.7-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-all-dev (3.12.7-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-fs (2.4.16-5) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-reportlab (4.2.5-1) ... Setting up python3-contourpy (1.3.1-1) ... Setting up dh-python (6.20241024) ... Setting up python3-scipy (1.14.1-3) ... Setting up python3-fonttools (4.55.0-3) ... Setting up rake (13.2.1-1) ... Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... Setting up python3-matplotlib (3.8.3-3+b1) ... Setting up libruby:arm64 (1:3.1+nmu1) ... Setting up ruby-rubygems (3.4.20-1) ... Setting up ruby-sdbm:arm64 (1.0.0-5+b5) ... Setting up libruby3.1t64:arm64 (3.1.2-8.4) ... Setting up ruby3.1 (3.1.2-8.4) ... Setting up ruby (1:3.1+nmu1) ... Setting up ruby-asciidoctor (2.0.23-1) ... Setting up asciidoctor (2.0.23-1) ... Processing triggers for libc-bin (2.40-4) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.84+dfsg-4+b1) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ariba-2.14.7+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ariba_2.14.7+ds-5_source.changes dpkg-buildpackage: info: source package ariba dpkg-buildpackage: info: source version 2.14.7+ds-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/ariba-2.14.7+ds' rm -rf /build/reproducible-path/ariba-2.14.7+ds/debian/man dh_auto_clean -- I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it make[1]: Leaving directory '/build/reproducible-path/ariba-2.14.7+ds' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/external_progs.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/versions.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/megares_data_finder.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/mapping.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/assembly.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/vfdb_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/tb.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/summary_sample.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/summary_cluster_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/summary_cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/sequence_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/sequence_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/scaffold_graph.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/samtools_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/report_flag_expander.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/report_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/report.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/reference_data.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/ref_seq_chooser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/ref_genes_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/read_store.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/read_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/pubmlst_ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/pubmlst_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/mlst_reporter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/mlst_profile.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/mic_plotter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/megares_zip_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/link.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/histogram.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/faidx.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/common.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/clusters.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/cdhit.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/card_record.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/bam_parse.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/assembly_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/assembly_compare.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/aln_to_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/assembly_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/ncbi_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/vfdb_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/versions_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/test_refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/tb_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/summary_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/summary_sample_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/summary_cluster_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/summary_cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/sequence_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/sequence_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/scaffold_graph_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/samtools_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/report_flag_expander_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/report_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/reference_data_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/ref_seq_chooser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/ref_genes_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/read_store_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/read_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/pubmlst_ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/pubmlst_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/mlst_reporter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/mlst_profile_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/mic_plotter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/megares_zip_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/megares_data_finder_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/mapping_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/link_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/histogram_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/flag_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/faidx_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/external_progs_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/common_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/clusters_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/cdhit_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/card_record_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/bam_parse_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/assembly_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/assembly_compare_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/aln_to_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/version.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/run.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/reportfilter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/refquery.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/pubmlstspecies.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/pubmlstget.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/prepareref_tb.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/prepareref.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/micplot.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/getref.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/expandflag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/aln2meta.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data copying ariba/test_run_data/ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data copying ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data copying ariba/test_run_data/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data copying ariba/test_run_data/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data copying ariba/test_run_data/metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20190102.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20190102.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181221.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181221.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181115.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181115.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/NC_000962.3.gb -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/NC_000962.3.fa.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.3 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_to_matrix.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_to_matrix.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_whole_run.out.csv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_input_files.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_fofn -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_init.fofn -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_var_groups.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_flag_expander.run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_flag_expander.run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_run.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_load_report_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_init_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_init_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_rename_sequences.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence_type.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_rename_sequences.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_rename_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.rename.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.params.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.empty.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.empty.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refdata_query_prepareref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.rename -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_too_short.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_too_long.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_ok.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_duplicate_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_sort_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_sort_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_clean.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.read_store -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_getter.dbases.xml -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.init.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_load_summary_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_load_mic_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_load_annotations.csv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_sam_to_fastq.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/dummy.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_data_info_file -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_db.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_db.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_init_refdata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_init_refdata.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_count_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_count_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 copying ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 copying ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 copying ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 copying ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene running build_ext building 'minimap_ariba' extension creating build/temp.linux-aarch64-cpython-313/ariba/ext aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/minimap -I/usr/include/python3.13 -c ariba/ext/minimap_ariba.cpp -o build/temp.linux-aarch64-cpython-313/ariba/ext/minimap_ariba.o aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/ariba/ext/minimap_ariba.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/minimap_ariba.cpython-313-aarch64-linux-gnu.so -lz -lminimap building 'fermilite_ariba' extension aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c ariba/ext/fml-asm_ariba.cpp -o build/temp.linux-aarch64-cpython-313/ariba/ext/fml-asm_ariba.o aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/ariba/ext/fml-asm_ariba.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/fermilite_ariba.cpython-313-aarch64-linux-gnu.so -lz -lfml building 'vcfcall_ariba' extension aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c ariba/ext/vcfcall_ariba.cpp -o build/temp.linux-aarch64-cpython-313/ariba/ext/vcfcall_ariba.o aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/ariba/ext/vcfcall_ariba.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/vcfcall_ariba.cpython-313-aarch64-linux-gnu.so running build_scripts creating build/scripts-3.13 copying and adjusting scripts/ariba -> build/scripts-3.13 changing mode of build/scripts-3.13/ariba from 644 to 755 I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/external_progs.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/versions.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/megares_data_finder.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/mapping.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/assembly.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/vfdb_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/tb.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/summary_sample.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/summary_cluster_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/summary_cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/sequence_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/sequence_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/scaffold_graph.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/samtools_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/report_flag_expander.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/report_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/report.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/reference_data.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/ref_seq_chooser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/ref_genes_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/read_store.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/read_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/pubmlst_ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/pubmlst_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/mlst_reporter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/mlst_profile.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/mic_plotter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/megares_zip_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/link.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/histogram.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/faidx.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/common.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/clusters.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/cdhit.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/card_record.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/bam_parse.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/assembly_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/assembly_compare.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/aln_to_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba copying ariba/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/assembly_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/ncbi_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/vfdb_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/versions_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/test_refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/tb_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/summary_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/summary_sample_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/summary_cluster_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/summary_cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/sequence_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/sequence_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/scaffold_graph_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/samtools_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/report_flag_expander_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/report_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/reference_data_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/ref_seq_chooser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/ref_genes_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/read_store_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/read_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/pubmlst_ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/pubmlst_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/mlst_reporter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/mlst_profile_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/mic_plotter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/megares_zip_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/megares_data_finder_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/mapping_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/link_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/histogram_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/flag_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/faidx_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/external_progs_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/common_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/clusters_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/cdhit_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/card_record_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/bam_parse_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/assembly_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/assembly_compare_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/aln_to_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests copying ariba/tests/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks copying ariba/tasks/version.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks copying ariba/tasks/test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks copying ariba/tasks/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks copying ariba/tasks/run.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks copying ariba/tasks/reportfilter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks copying ariba/tasks/refquery.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks copying ariba/tasks/pubmlstspecies.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks copying ariba/tasks/pubmlstget.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks copying ariba/tasks/prepareref_tb.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks copying ariba/tasks/prepareref.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks copying ariba/tasks/micplot.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks copying ariba/tasks/getref.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks copying ariba/tasks/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks copying ariba/tasks/expandflag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks copying ariba/tasks/aln2meta.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks copying ariba/tasks/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/test_run_data copying ariba/test_run_data/ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/test_run_data copying ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/test_run_data copying ariba/test_run_data/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/test_run_data copying ariba/test_run_data/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/test_run_data copying ariba/test_run_data/metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/test_run_data creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20190102.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20190102.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181221.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181221.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181115.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181115.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data copying ariba/tb_data/NC_000962.3.gb -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data copying ariba/tb_data/NC_000962.3.fa.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.3 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/summary_to_matrix.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/summary_to_matrix.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_whole_run.out.csv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_input_files.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_fofn -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_init.fofn -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_var_groups.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/report_flag_expander.run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/report_flag_expander.run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_run.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_load_report_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_init_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_init_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_rename_sequences.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence_type.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_rename_sequences.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_rename_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.rename.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.params.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.empty.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.empty.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/refdata_query_prepareref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.rename -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_too_short.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_too_long.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_ok.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_duplicate_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_sort_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_sort_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_clean.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.read_store -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_getter.dbases.xml -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.init.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_load_summary_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_load_mic_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_load_annotations.csv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_sam_to_fastq.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/dummy.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_data_info_file -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_db.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_db.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_init_refdata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_init_refdata.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_count_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_count_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parser_write_files creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 copying ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 copying ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 copying ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 copying ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene running build_ext building 'minimap_ariba' extension creating build/temp.linux-aarch64-cpython-312/ariba/ext aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/minimap -I/usr/include/python3.12 -c ariba/ext/minimap_ariba.cpp -o build/temp.linux-aarch64-cpython-312/ariba/ext/minimap_ariba.o aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/ariba/ext/minimap_ariba.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/minimap_ariba.cpython-312-aarch64-linux-gnu.so -lz -lminimap building 'fermilite_ariba' extension aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c ariba/ext/fml-asm_ariba.cpp -o build/temp.linux-aarch64-cpython-312/ariba/ext/fml-asm_ariba.o aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/ariba/ext/fml-asm_ariba.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/fermilite_ariba.cpython-312-aarch64-linux-gnu.so -lz -lfml building 'vcfcall_ariba' extension aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c ariba/ext/vcfcall_ariba.cpp -o build/temp.linux-aarch64-cpython-312/ariba/ext/vcfcall_ariba.o aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/ariba/ext/vcfcall_ariba.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/vcfcall_ariba.cpython-312-aarch64-linux-gnu.so running build_scripts creating build/scripts-3.12 copying and adjusting scripts/ariba -> build/scripts-3.12 changing mode of build/scripts-3.12/ariba from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build; python3.13 -m pytest -k "not test_load_fasta_files_and_write_clusters_file" ============================= test session starts ============================== platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/ariba-2.14.7+ds plugins: typeguard-4.4.1 collected 356 items / 1 deselected / 355 selected ariba/tests/aln_to_metadata_test.py .................... [ 5%] ariba/tests/assembly_compare_test.py ................ [ 10%] ariba/tests/assembly_test.py ..ss..... [ 12%] ariba/tests/assembly_variants_test.py ........... [ 15%] ariba/tests/bam_parse_test.py ...... [ 17%] ariba/tests/card_record_test.py ........ [ 19%] ariba/tests/cdhit_test.py ................ [ 24%] ariba/tests/cluster_test.py ............................. [ 32%] ariba/tests/clusters_test.py ................ [ 36%] ariba/tests/common_test.py .. [ 37%] ariba/tests/external_progs_test.py . [ 37%] ariba/tests/faidx_test.py . [ 38%] ariba/tests/flag_test.py ....... [ 40%] ariba/tests/histogram_test.py .... [ 41%] ariba/tests/link_test.py ......... [ 43%] ariba/tests/mapping_test.py ....... [ 45%] ariba/tests/megares_data_finder_test.py .. [ 46%] ariba/tests/megares_zip_parser_test.py ..... [ 47%] ariba/tests/mic_plotter_test.py ............. [ 51%] ariba/tests/mlst_profile_test.py .... [ 52%] ariba/tests/mlst_reporter_test.py ..... [ 53%] ariba/tests/pubmlst_getter_test.py ... [ 54%] ariba/tests/pubmlst_ref_preparer_test.py . [ 54%] ariba/tests/read_filter_test.py . [ 55%] ariba/tests/read_store_test.py ....... [ 57%] ariba/tests/ref_genes_getter_test.py . [ 57%] ariba/tests/ref_preparer_test.py ..... [ 58%] ariba/tests/ref_seq_chooser_test.py ....... [ 60%] ariba/tests/reference_data_test.py .............................. [ 69%] ariba/tests/report_filter_test.py ................. [ 74%] ariba/tests/report_flag_expander_test.py . [ 74%] ariba/tests/samtools_variants_test.py ....... [ 76%] ariba/tests/scaffold_graph_test.py ..... [ 77%] ariba/tests/sequence_metadata_test.py ..... [ 79%] ariba/tests/sequence_variant_test.py ....... [ 81%] ariba/tests/summary_cluster_test.py ....................... [ 87%] ariba/tests/summary_cluster_variant_test.py .... [ 88%] ariba/tests/summary_sample_test.py .... [ 89%] ariba/tests/summary_test.py .................... [ 95%] ariba/tests/tb_test.py ....... [ 97%] ariba/tests/test_refdata_query.py ..... [ 98%] ariba/tests/versions_test.py . [ 99%] ariba/tests/vfdb_parser_test.py ... [100%] =============================== warnings summary =============================== ariba/__init__.py:1 /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html from pkg_resources import get_distribution ../../../../../../usr/lib/python3/dist-packages/pyfastaq/__init__.py:3 /usr/lib/python3/dist-packages/pyfastaq/__init__.py:3: DeprecationWarning: Unimplemented abstract methods {'locate_file', 'read_text'} __version__ = Distribution().from_name('pyfastaq').version .pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours .pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours .pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mic_plotter.py:222: MatplotlibDeprecationWarning: The get_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps[name]`` or ``matplotlib.colormaps.get_cmap(obj)`` instead. cmap = cmx.get_cmap(colormap) .pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mic_plotter.py:206: MatplotlibDeprecationWarning: The get_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps[name]`` or ``matplotlib.colormaps.get_cmap(obj)`` instead. cmap = cmx.get_cmap(colormap) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ===== 353 passed, 2 skipped, 1 deselected, 6 warnings in 81.76s (0:01:21) ====== I: pybuild base:311: cd /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build; python3.12 -m pytest ============================= test session starts ============================== platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/ariba-2.14.7+ds plugins: typeguard-4.4.1 collected 356 items ariba/tests/aln_to_metadata_test.py .................... [ 5%] ariba/tests/assembly_compare_test.py ................ [ 10%] ariba/tests/assembly_test.py ..ss..... [ 12%] ariba/tests/assembly_variants_test.py ........... [ 15%] ariba/tests/bam_parse_test.py ...... [ 17%] ariba/tests/card_record_test.py ........ [ 19%] ariba/tests/cdhit_test.py ................ [ 24%] ariba/tests/cluster_test.py ............................. [ 32%] ariba/tests/clusters_test.py ................ [ 36%] ariba/tests/common_test.py .. [ 37%] ariba/tests/external_progs_test.py . [ 37%] ariba/tests/faidx_test.py . [ 37%] ariba/tests/flag_test.py ....... [ 39%] ariba/tests/histogram_test.py .... [ 41%] ariba/tests/link_test.py ......... [ 43%] ariba/tests/mapping_test.py ....... [ 45%] ariba/tests/megares_data_finder_test.py .. [ 46%] ariba/tests/megares_zip_parser_test.py ..... [ 47%] ariba/tests/mic_plotter_test.py ............. [ 51%] ariba/tests/mlst_profile_test.py .... [ 52%] ariba/tests/mlst_reporter_test.py ..... [ 53%] ariba/tests/pubmlst_getter_test.py ... [ 54%] ariba/tests/pubmlst_ref_preparer_test.py .. [ 55%] ariba/tests/read_filter_test.py . [ 55%] ariba/tests/read_store_test.py ....... [ 57%] ariba/tests/ref_genes_getter_test.py . [ 57%] ariba/tests/ref_preparer_test.py ..... [ 58%] ariba/tests/ref_seq_chooser_test.py ....... [ 60%] ariba/tests/reference_data_test.py .............................. [ 69%] ariba/tests/report_filter_test.py ................. [ 74%] ariba/tests/report_flag_expander_test.py . [ 74%] ariba/tests/samtools_variants_test.py ....... [ 76%] ariba/tests/scaffold_graph_test.py ..... [ 77%] ariba/tests/sequence_metadata_test.py ..... [ 79%] ariba/tests/sequence_variant_test.py ....... [ 81%] ariba/tests/summary_cluster_test.py ....................... [ 87%] ariba/tests/summary_cluster_variant_test.py .... [ 88%] ariba/tests/summary_sample_test.py .... [ 89%] ariba/tests/summary_test.py .................... [ 95%] ariba/tests/tb_test.py ....... [ 97%] ariba/tests/test_refdata_query.py ..... [ 98%] ariba/tests/versions_test.py . [ 99%] ariba/tests/vfdb_parser_test.py ... [100%] =============================== warnings summary =============================== ariba/__init__.py:1 /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html from pkg_resources import get_distribution ../../../../../../usr/lib/python3/dist-packages/pyfastaq/__init__.py:3 /usr/lib/python3/dist-packages/pyfastaq/__init__.py:3: DeprecationWarning: Unimplemented abstract methods {'locate_file', 'read_text'} __version__ = Distribution().from_name('pyfastaq').version .pybuild/cpython3_3.12_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours .pybuild/cpython3_3.12_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours .pybuild/cpython3_3.12_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/mic_plotter.py:222: MatplotlibDeprecationWarning: The get_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps[name]`` or ``matplotlib.colormaps.get_cmap(obj)`` instead. cmap = cmx.get_cmap(colormap) .pybuild/cpython3_3.12_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/mic_plotter.py:206: MatplotlibDeprecationWarning: The get_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps[name]`` or ``matplotlib.colormaps.get_cmap(obj)`` instead. cmap = cmx.get_cmap(colormap) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============ 354 passed, 2 skipped, 6 warnings in 85.93s (0:01:25) ============= create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/ariba/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /build/reproducible-path/ariba-2.14.7+ds/debian/ariba /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext running build_scripts running install_lib creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/vcfcall_ariba.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/fermilite_ariba.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/minimap_ariba.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/report_flag_expander.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/vfdb_parser.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/ref_genes_getter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/refdata_query.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/read_filter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/versions.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/pubmlst_ref_preparer.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/pubmlst_getter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mic_plotter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/megares_zip_parser.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/megares_data_finder.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/faidx.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/ref_preparer.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/tb.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/sequence_metadata.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/reference_data.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/report_filter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/read_store.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary_cluster_variant.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary_cluster.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary_sample.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mlst_profile.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mlst_reporter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/histogram.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/clusters.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/samtools_variants.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/report.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/flag.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/cluster.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/cdhit.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/card_record.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/assembly_variants.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/assembly_compare.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/ref_seq_chooser.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/external_progs.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/link.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/scaffold_graph.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/bam_parse.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mapping.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/common.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/assembly.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/sequence_variant.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/aln_to_metadata.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/NC_000962.3.fa.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/NC_000962.3.gb -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181115.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181115.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181221.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181221.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20190102.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20190102.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/test.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/summary.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/run.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/reportfilter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/refquery.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/pubmlstspecies.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/pubmlstget.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/prepareref_tb.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/prepareref.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/micplot.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/getref.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/flag.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/expandflag.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/aln2meta.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/aln2meta.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/expandflag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/getref.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/micplot.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/prepareref.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/prepareref_tb.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/pubmlstget.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/pubmlstspecies.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/refquery.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/reportfilter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/run.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/version.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/vfdb_parser_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/versions_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/test_refdata_query.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/tb_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_sample_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_cluster_variant_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_cluster_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/sequence_variant_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/sequence_metadata_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/scaffold_graph_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/samtools_variants_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/report_flag_expander_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/report_filter_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/reference_data_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ref_seq_chooser_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ref_preparer_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ref_genes_getter_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/read_store_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/read_filter_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/pubmlst_ref_preparer_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/pubmlst_getter_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ncbi_getter_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mlst_reporter_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mlst_profile_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mic_plotter_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/megares_zip_parser_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/megares_data_finder_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mapping_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/link_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/histogram_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/flag_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/faidx_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/external_progs_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/common_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/clusters_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/cluster_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/cdhit_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/card_record_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/bam_parse_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/assembly_variants_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/assembly_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/assembly_compare_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/aln_to_metadata_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_count_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_count_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_refdata.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_refdata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_db.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_db.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_data_info_file -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/dummy.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_sam_to_fastq.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_load_annotations.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_load_mic_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_load_summary_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_profile_test.init.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_profile_test.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_getter.dbases.xml -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.read_store -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_clean.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_sort_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_sort_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_duplicate_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_ok.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_too_long.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_too_short.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.rename -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_fails.empty.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_fails.empty.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_fails.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.rename.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_rename_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_rename_sequences.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence_type.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_rename_sequences.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_init_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_init_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_load_report_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_run.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_flag_expander.run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_flag_expander.run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_var_groups.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_init.fofn -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_load_fofn -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_load_input_files.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_whole_run.out.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_to_matrix.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_to_matrix.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.in.3 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/aln_to_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/assembly_compare_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/assembly_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/bam_parse_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/card_record_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/cdhit_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/clusters_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/common_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/external_progs_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/faidx_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/flag_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/histogram_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/link_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mapping_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/megares_data_finder_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/megares_zip_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mlst_profile_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mlst_reporter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/pubmlst_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/pubmlst_ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/read_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/read_store_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ref_genes_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ref_seq_chooser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/reference_data_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/report_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/report_flag_expander_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/samtools_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/scaffold_graph_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/sequence_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/sequence_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_cluster_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_sample_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/tb_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/test_refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/versions_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/vfdb_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ncbi_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/assembly_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/aln_to_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/assembly_compare.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/assembly_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/bam_parse.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/card_record.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/cdhit.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/clusters.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/common.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/faidx.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/histogram.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/link.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/megares_zip_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mic_plotter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mlst_profile.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mlst_reporter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/pubmlst_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/pubmlst_ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/read_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/read_store.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/ref_genes_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/ref_seq_chooser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/reference_data.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/report.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/report_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/report_flag_expander.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/samtools_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/scaffold_graph.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/sequence_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/sequence_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary_cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary_cluster_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary_sample.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/vfdb_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/assembly.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mapping.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/megares_data_finder.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/versions.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/external_progs.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/aln2meta.py to aln2meta.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/expandflag.py to expandflag.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/flag.py to flag.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/getref.py to getref.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/micplot.py to micplot.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/prepareref.py to prepareref.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/prepareref_tb.py to prepareref_tb.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/pubmlstget.py to pubmlstget.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/pubmlstspecies.py to pubmlstspecies.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/refquery.py to refquery.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/reportfilter.py to reportfilter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/run.py to run.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/summary.py to summary.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/test.py to test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/aln_to_metadata_test.py to aln_to_metadata_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/assembly_compare_test.py to assembly_compare_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/assembly_test.py to assembly_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/bam_parse_test.py to bam_parse_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/card_record_test.py to card_record_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/cdhit_test.py to cdhit_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/cluster_test.py to cluster_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/clusters_test.py to clusters_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/common_test.py to common_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/external_progs_test.py to external_progs_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/faidx_test.py to faidx_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/flag_test.py to flag_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/histogram_test.py to histogram_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/link_test.py to link_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mapping_test.py to mapping_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/megares_data_finder_test.py to megares_data_finder_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/megares_zip_parser_test.py to megares_zip_parser_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mic_plotter_test.py to mic_plotter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mlst_profile_test.py to mlst_profile_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mlst_reporter_test.py to mlst_reporter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/pubmlst_getter_test.py to pubmlst_getter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/pubmlst_ref_preparer_test.py to pubmlst_ref_preparer_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/read_filter_test.py to read_filter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/read_store_test.py to read_store_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ref_genes_getter_test.py to ref_genes_getter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ref_preparer_test.py to ref_preparer_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ref_seq_chooser_test.py to ref_seq_chooser_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/reference_data_test.py to reference_data_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/report_filter_test.py to report_filter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/report_flag_expander_test.py to report_flag_expander_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/samtools_variants_test.py to samtools_variants_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/scaffold_graph_test.py to scaffold_graph_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/sequence_metadata_test.py to sequence_metadata_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/sequence_variant_test.py to sequence_variant_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_cluster_test.py to summary_cluster_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_cluster_variant_test.py to summary_cluster_variant_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_sample_test.py to summary_sample_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_test.py to summary_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/tb_test.py to tb_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/test_refdata_query.py to test_refdata_query.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/versions_test.py to versions_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/vfdb_parser_test.py to vfdb_parser_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ncbi_getter_test.py to ncbi_getter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/assembly_variants_test.py to assembly_variants_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/aln_to_metadata.py to aln_to_metadata.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/assembly_compare.py to assembly_compare.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/assembly_variants.py to assembly_variants.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/bam_parse.py to bam_parse.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/card_record.py to card_record.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/cdhit.py to cdhit.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/cluster.py to cluster.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/clusters.py to clusters.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/common.py to common.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/faidx.py to faidx.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/flag.py to flag.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/histogram.py to histogram.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/link.py to link.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/megares_zip_parser.py to megares_zip_parser.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mic_plotter.py to mic_plotter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mlst_profile.py to mlst_profile.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mlst_reporter.py to mlst_reporter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/pubmlst_getter.py to pubmlst_getter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/pubmlst_ref_preparer.py to pubmlst_ref_preparer.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/read_filter.py to read_filter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/read_store.py to read_store.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/ref_genes_getter.py to ref_genes_getter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/ref_preparer.py to ref_preparer.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/ref_seq_chooser.py to ref_seq_chooser.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/refdata_query.py to refdata_query.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/reference_data.py to reference_data.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/report.py to report.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/report_filter.py to report_filter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/report_flag_expander.py to report_flag_expander.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/samtools_variants.py to samtools_variants.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/scaffold_graph.py to scaffold_graph.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/sequence_metadata.py to sequence_metadata.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/sequence_variant.py to sequence_variant.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary.py to summary.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary_cluster.py to summary_cluster.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary_cluster_variant.py to summary_cluster_variant.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary_sample.py to summary_sample.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb.py to tb.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/vfdb_parser.py to vfdb_parser.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/assembly.py to assembly.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mapping.py to mapping.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/megares_data_finder.py to megares_data_finder.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/versions.py to versions.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/external_progs.py to external_progs.cpython-313.pyc running install_egg_info running egg_info creating ariba.egg-info writing ariba.egg-info/PKG-INFO writing dependency_links to ariba.egg-info/dependency_links.txt writing requirements to ariba.egg-info/requires.txt writing top-level names to ariba.egg-info/top_level.txt writing manifest file 'ariba.egg-info/SOURCES.txt' reading manifest file 'ariba.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.h' under directory 'third_party' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'ariba.egg-info/SOURCES.txt' Copying ariba.egg-info to /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba-2.14.6.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/bin copying build/scripts-3.13/ariba -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/bin changing mode of /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/bin/ariba to 755 I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/ariba-2.14.7+ds/debian/ariba /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext running build_scripts running install_lib creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/vcfcall_ariba.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/fermilite_ariba.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/minimap_ariba.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/summary.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/report_flag_expander.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/vfdb_parser.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/ref_genes_getter.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/refdata_query.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/read_filter.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/versions.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/pubmlst_ref_preparer.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/pubmlst_getter.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/mic_plotter.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/megares_zip_parser.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/megares_data_finder.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/faidx.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/ref_preparer.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/tb.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/sequence_metadata.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/reference_data.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/report_filter.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/read_store.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/summary_cluster_variant.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/summary_cluster.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/summary_sample.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/mlst_profile.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/mlst_reporter.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/histogram.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/clusters.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/samtools_variants.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/report.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/flag.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/cluster.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/cdhit.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/card_record.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/assembly_variants.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/assembly_compare.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/ref_seq_chooser.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/external_progs.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/link.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/scaffold_graph.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/bam_parse.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/mapping.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/common.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/assembly.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/sequence_variant.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/aln_to_metadata.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__pycache__ creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data/NC_000962.3.fa.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data/NC_000962.3.gb -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data/panel.20181115.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data/panel.20181115.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data/panel.20181221.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data/panel.20181221.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data/panel.20190102.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb_data/panel.20190102.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tb_data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/test_run_data/metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/test_run_data/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/test_run_data/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/test_run_data/ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/test_run_data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/version.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/test.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/summary.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/run.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/reportfilter.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/refquery.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/pubmlstspecies.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/pubmlstget.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/prepareref_tb.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/prepareref.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/micplot.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/getref.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/flag.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/expandflag.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/aln2meta.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/aln2meta.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/expandflag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/getref.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/micplot.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/prepareref.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/prepareref_tb.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/pubmlstget.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/pubmlstspecies.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/refquery.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/reportfilter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/run.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tasks/version.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/vfdb_parser_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/versions_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/test_refdata_query.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/tb_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/summary_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/summary_sample_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/summary_cluster_variant_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/summary_cluster_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/sequence_variant_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/sequence_metadata_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/scaffold_graph_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/samtools_variants_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/report_flag_expander_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/report_filter_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/reference_data_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/ref_seq_chooser_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/ref_preparer_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/ref_genes_getter_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/read_store_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/read_filter_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/pubmlst_ref_preparer_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/pubmlst_getter_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/ncbi_getter_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/mlst_reporter_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/mlst_profile_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/mic_plotter_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/megares_zip_parser_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/megares_data_finder_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/mapping_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/link_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/histogram_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/flag_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/faidx_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/external_progs_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/common_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/clusters_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/cluster_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/cdhit_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/card_record_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/bam_parse_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/assembly_variants_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/assembly_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/assembly_compare_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/aln_to_metadata_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__pycache__ creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/megares_zip_parser_write_files creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/clusters_run_with_tb.ref creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/ref_preparer_test_run.out creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_parse.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cdhit_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_count_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_count_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_refdata.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_init_refdata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_dummy_db.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_dummy_db.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_load_data_info_file -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/dummy.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/graph_test_update_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/link_test_init.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/link_test_init.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/link_test_init.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/link_test_init.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mapping_test_sam_to_fastq.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parser_load_annotations.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_load_mic_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_load_summary_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_profile_test.init.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_profile_test.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/pubmlst_getter.dbases.xml -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_filter_test_run.in.read_store -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_filter_test_run.in.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_clean.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_get_reads.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_sort_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/read_store_test_sort_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refcheck_test_check_duplicate_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refcheck_test_check_ok.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refcheck_test_check_too_long.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refcheck_test_check_too_short.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refcheck_test_fix_in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refcheck_test_fix_out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refcheck_test_fix_out.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refcheck_test_fix_out.rename -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_init_fails.empty.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_init_fails.empty.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_init_fails.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_init_ok.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_init_ok.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_init_ok.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_init_ok.rename.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_load_rename_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_rename_sequences.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_sequence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_sequence.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_sequence_type.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_test_rename_sequences.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/report_filter_test_init_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/report_filter_test_init_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/report_filter_test_load_report_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/report_filter_test_run.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/report_filter_test_run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/report_filter_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/report_flag_expander.run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/report_flag_expander.run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_sample_test_var_groups.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_test_init.fofn -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_test_load_fofn -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_test_load_input_files.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_test_whole_run.out.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_to_matrix.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/summary_to_matrix.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/test_common_cat_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/test_common_cat_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/test_common_cat_files.in.3 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/test_common_cat_files.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/aln_to_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/assembly_compare_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/assembly_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/bam_parse_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/card_record_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/cdhit_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/clusters_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/common_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/external_progs_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/faidx_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/flag_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/histogram_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/link_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/mapping_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/megares_data_finder_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/megares_zip_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/mic_plotter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/mlst_profile_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/mlst_reporter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/pubmlst_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/pubmlst_ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/read_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/read_store_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/ref_genes_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/ref_seq_chooser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/reference_data_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/report_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/report_flag_expander_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/samtools_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/scaffold_graph_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/sequence_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/sequence_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/summary_cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/summary_cluster_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/summary_sample_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/summary_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/tb_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/test_refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/versions_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/vfdb_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/ncbi_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tests/assembly_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/aln_to_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/assembly_compare.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/assembly_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/bam_parse.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/card_record.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/cdhit.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/clusters.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/common.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/faidx.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/histogram.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/link.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/megares_zip_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/mic_plotter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/mlst_profile.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/mlst_reporter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/pubmlst_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/pubmlst_ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/read_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/read_store.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/ref_genes_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/ref_seq_chooser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/reference_data.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/report.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/report_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/report_flag_expander.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/samtools_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/scaffold_graph.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/sequence_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/sequence_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/summary_cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/summary_cluster_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/summary_sample.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/tb.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/vfdb_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/assembly.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/mapping.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/megares_data_finder.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/versions.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.12_ariba/build/ariba/external_progs.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/aln2meta.py to aln2meta.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/expandflag.py to expandflag.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/flag.py to flag.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/getref.py to getref.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/micplot.py to micplot.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/prepareref.py to prepareref.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/prepareref_tb.py to prepareref_tb.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/pubmlstget.py to pubmlstget.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/pubmlstspecies.py to pubmlstspecies.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/refquery.py to refquery.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/reportfilter.py to reportfilter.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/run.py to run.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/summary.py to summary.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/test.py to test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tasks/version.py to version.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/aln_to_metadata_test.py to aln_to_metadata_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/assembly_compare_test.py to assembly_compare_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/assembly_test.py to assembly_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/bam_parse_test.py to bam_parse_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/card_record_test.py to card_record_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/cdhit_test.py to cdhit_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/cluster_test.py to cluster_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/clusters_test.py to clusters_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/common_test.py to common_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/external_progs_test.py to external_progs_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/faidx_test.py to faidx_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/flag_test.py to flag_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/histogram_test.py to histogram_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/link_test.py to link_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/mapping_test.py to mapping_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/megares_data_finder_test.py to megares_data_finder_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/megares_zip_parser_test.py to megares_zip_parser_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/mic_plotter_test.py to mic_plotter_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/mlst_profile_test.py to mlst_profile_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/mlst_reporter_test.py to mlst_reporter_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/pubmlst_getter_test.py to pubmlst_getter_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/pubmlst_ref_preparer_test.py to pubmlst_ref_preparer_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/read_filter_test.py to read_filter_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/read_store_test.py to read_store_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/ref_genes_getter_test.py to ref_genes_getter_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/ref_preparer_test.py to ref_preparer_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/ref_seq_chooser_test.py to ref_seq_chooser_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/reference_data_test.py to reference_data_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/report_filter_test.py to report_filter_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/report_flag_expander_test.py to report_flag_expander_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/samtools_variants_test.py to samtools_variants_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/scaffold_graph_test.py to scaffold_graph_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/sequence_metadata_test.py to sequence_metadata_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/sequence_variant_test.py to sequence_variant_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/summary_cluster_test.py to summary_cluster_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/summary_cluster_variant_test.py to summary_cluster_variant_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/summary_sample_test.py to summary_sample_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/summary_test.py to summary_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/tb_test.py to tb_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/test_refdata_query.py to test_refdata_query.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/versions_test.py to versions_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/vfdb_parser_test.py to vfdb_parser_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/ncbi_getter_test.py to ncbi_getter_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tests/assembly_variants_test.py to assembly_variants_test.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/aln_to_metadata.py to aln_to_metadata.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/assembly_compare.py to assembly_compare.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/assembly_variants.py to assembly_variants.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/bam_parse.py to bam_parse.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/card_record.py to card_record.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/cdhit.py to cdhit.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/cluster.py to cluster.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/clusters.py to clusters.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/common.py to common.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/faidx.py to faidx.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/flag.py to flag.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/histogram.py to histogram.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/link.py to link.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/megares_zip_parser.py to megares_zip_parser.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/mic_plotter.py to mic_plotter.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/mlst_profile.py to mlst_profile.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/mlst_reporter.py to mlst_reporter.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/pubmlst_getter.py to pubmlst_getter.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/pubmlst_ref_preparer.py to pubmlst_ref_preparer.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/read_filter.py to read_filter.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/read_store.py to read_store.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/ref_genes_getter.py to ref_genes_getter.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/ref_preparer.py to ref_preparer.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/ref_seq_chooser.py to ref_seq_chooser.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/refdata_query.py to refdata_query.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/reference_data.py to reference_data.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/report.py to report.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/report_filter.py to report_filter.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/report_flag_expander.py to report_flag_expander.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/samtools_variants.py to samtools_variants.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/scaffold_graph.py to scaffold_graph.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/sequence_metadata.py to sequence_metadata.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/sequence_variant.py to sequence_variant.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/summary.py to summary.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/summary_cluster.py to summary_cluster.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/summary_cluster_variant.py to summary_cluster_variant.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/summary_sample.py to summary_sample.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/tb.py to tb.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/vfdb_parser.py to vfdb_parser.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/assembly.py to assembly.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/mapping.py to mapping.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/megares_data_finder.py to megares_data_finder.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/versions.py to versions.cpython-312.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba/external_progs.py to external_progs.cpython-312.pyc running install_egg_info running egg_info writing ariba.egg-info/PKG-INFO writing dependency_links to ariba.egg-info/dependency_links.txt writing requirements to ariba.egg-info/requires.txt writing top-level names to ariba.egg-info/top_level.txt reading manifest file 'ariba.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.h' under directory 'third_party' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'ariba.egg-info/SOURCES.txt' Copying ariba.egg-info to /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.12/dist-packages/ariba-2.14.6.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.12/ariba -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/bin changing mode of /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/bin/ariba to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/ariba-2.14.7+ds' mkdir -p /build/reproducible-path/ariba-2.14.7+ds/debian/man asciidoctor -a docdate='' -b manpage -o /build/reproducible-path/ariba-2.14.7+ds/debian/man/ariba.1 /build/reproducible-path/ariba-2.14.7+ds/debian/ariba.1.adoc dh_installman -- make[1]: Leaving directory '/build/reproducible-path/ariba-2.14.7+ds' dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'ariba' in '../ariba_2.14.7+ds-5_arm64.deb'. dpkg-deb: building package 'ariba-dbgsym' in '../ariba-dbgsym_2.14.7+ds-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../ariba_2.14.7+ds-5_arm64.buildinfo dpkg-genchanges --build=binary -O../ariba_2.14.7+ds-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1201556 and its subdirectories I: Current time: Mon Dec 9 00:10:16 -12 2024 I: pbuilder-time-stamp: 1733746216 Mon Dec 9 12:10:18 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink01-arm64.debian.net. Mon Dec 9 12:10:18 UTC 2024 I: Preparing to do remote build '2' on codethink01-arm64.debian.net. Mon Dec 9 12:17:58 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. Mon Dec 9 12:17:59 UTC 2024 I: ariba_2.14.7+ds-5_arm64.changes: Format: 1.8 Date: Wed, 04 Dec 2024 17:25:45 +0100 Source: ariba Binary: ariba ariba-dbgsym Architecture: arm64 Version: 2.14.7+ds-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: ariba - Antibiotic Resistance Identification By Assembly Closes: 1085332 Changes: ariba (2.14.7+ds-5) unstable; urgency=medium . * Team upload. * Fix Python3.12 syntax warnings Closes: #1085332 * Standards-Version: 4.7.0 (routine-update) Checksums-Sha1: bfca47ffdf1af288f78a6185ce15f8cd78c70296 660300 ariba-dbgsym_2.14.7+ds-5_arm64.deb 66004b466025809d09693e33bc70b3ff574cacd0 11528 ariba_2.14.7+ds-5_arm64.buildinfo 88af59c10187786086d8f73847d8a786204332eb 1952084 ariba_2.14.7+ds-5_arm64.deb Checksums-Sha256: 55f8a2a58b91490f270459bc2e3531095e3a22d594e900be416ace1f78033daa 660300 ariba-dbgsym_2.14.7+ds-5_arm64.deb aa8788888c56835b41c457d732e5cf8522bf354400d9dd449de40c89e1a0bcc4 11528 ariba_2.14.7+ds-5_arm64.buildinfo 97a18a9f184738c824b9000c8c507f4e45d329f5796e6b1f50ca99d731eb91bf 1952084 ariba_2.14.7+ds-5_arm64.deb Files: c37e469449ad79667ab026033950894d 660300 debug optional ariba-dbgsym_2.14.7+ds-5_arm64.deb 94cfadd3e3a0792d9deb5f4ecea89b38 11528 science optional ariba_2.14.7+ds-5_arm64.buildinfo b5073988e4d73a32f11b4eaa4a62a8e5 1952084 science optional ariba_2.14.7+ds-5_arm64.deb Mon Dec 9 12:18:00 UTC 2024 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_6-69839.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.rqQ4fZLT/ariba_2.14.7+ds-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.rqQ4fZLT/ariba_2.14.7+ds-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.rqQ4fZLT/ariba_2.14.7+ds-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.rqQ4fZLT/b1/ariba_2.14.7+ds-5_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.rqQ4fZLT/b2/ariba_2.14.7+ds-5_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.366s) 0.366s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.038s) 0.038s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 706ms CPU time consumed: 701ms Mon Dec 9 12:18:01 UTC 2024 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Mon Dec 9 12:18:01 UTC 2024 I: ariba from unstable built successfully and reproducibly on arm64. Mon Dec 9 12:18:03 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Dec 9 12:18:03 UTC 2024 I: Submitting 16K b1/ariba_2.14.7+ds-5_arm64.buildinfo.asc Mon Dec 9 12:18:06 UTC 2024 I: Submitting 16K b2/ariba_2.14.7+ds-5_arm64.buildinfo.asc Mon Dec 9 12:18:08 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Dec 9 12:18:08 UTC 2024 I: Done submitting .buildinfo files. Mon Dec 9 12:18:08 UTC 2024 I: Removing signed ariba_2.14.7+ds-5_arm64.buildinfo.asc files: removed './b1/ariba_2.14.7+ds-5_arm64.buildinfo.asc' removed './b2/ariba_2.14.7+ds-5_arm64.buildinfo.asc'