Wed Aug 21 00:52:02 UTC 2024 I: starting to build vsearch/unstable/amd64 on jenkins on '2024-08-21 00:51' Wed Aug 21 00:52:02 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_33/26458/console.log Wed Aug 21 00:52:02 UTC 2024 I: Downloading source for unstable/vsearch=2.28.1-3 --2024-08-21 00:52:02-- http://deb.debian.org/debian/pool/main/v/vsearch/vsearch_2.28.1-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2241 (2.2K) [text/prs.lines.tag] Saving to: ‘vsearch_2.28.1-3.dsc’ 0K .. 100% 247M=0s 2024-08-21 00:52:02 (247 MB/s) - ‘vsearch_2.28.1-3.dsc’ saved [2241/2241] Wed Aug 21 00:52:02 UTC 2024 I: vsearch_2.28.1-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: vsearch Binary: vsearch, vsearch-examples Architecture: any all Version: 2.28.1-3 Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille , Étienne Mollier Homepage: https://github.com/torognes/vsearch/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/vsearch Vcs-Git: https://salsa.debian.org/med-team/vsearch.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, zlib1g-dev, libbz2-dev, libtext-markdown-perl, ghostscript, libsimde-dev [!amd64 !arm64 !ppc64el], time Package-List: vsearch deb science optional arch=any vsearch-examples deb science optional arch=all Checksums-Sha1: b972ec90aa54ecd3c08632ae8390e1f69331d957 272918 vsearch_2.28.1.orig.tar.gz a0411105639dc392a151319eb17cb89e7415bcb0 1633956 vsearch_2.28.1-3.debian.tar.xz Checksums-Sha256: 4f8bf0ad43fef77e573d152b59f55a1f81eb84c22d6545911757e6108f8de21c 272918 vsearch_2.28.1.orig.tar.gz 00a946561ad0f76ac41648fcf2b240e0f2f8b3ac262c8dca63d5dbbbb66f778b 1633956 vsearch_2.28.1-3.debian.tar.xz Files: f9308f70f55e9c90ba4800ca115be1df 272918 vsearch_2.28.1.orig.tar.gz ef0f0cd51581fcebbafcecfcf8904601 1633956 vsearch_2.28.1-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmaECngACgkQPCZ2P2xn 5uL47hAAj9iChcUspfI5LfMcRyoqQuF9T/pKpTohGMzf4rqextxABS3WG2ZgLRFJ 9PrMH3+Twr4ODHXUxZHjrB1GFkkkSWTu0jrfzndNmdZ56Ihbk6F88N3laomilmkc Zhf6AZIgYhP2Aeht+geXFQKomZhi6xvOEVNuNgAslWaKYKerdVVtBIKYgdnyIg13 u/a1PLBL1lhwVA1+Le/T1Vl8FJ9H51ZG12qzk+jq4BrUsqmCwl7PwYVYE7r3ru2c EexxX37KZ8a4uK75vDw0dgEv7sMZKMJyK0bCX8hjUciViMwS9lwsvBRb2VROZeAm OytiFko0AdUA5q00AsSRGBnIqnM/EWjjq/Lpn47Su+FZ26O+UijtyTgaUbSL1VjE 3gCdtEV19o96IQ+CGfiPuOhjyobpD2VPbaoq1ZkBekF2F5ZQX0+fTsUOG3AeRlO3 /Iv3KZhVpJys/ApYMP21UNt/acJq+8Xoib7BNkoicNKbVVF30iZt0eksNf2jNchi 7GdtesfEVGPXgj7s5lVhI7dudGDmftHA8/lFur+ZwA4sdQ+qTmWvE6jitzhgkJBp nsmPP/MqP7bRD3SV5+oqkqRBniNMxHQYBSlRFGjZqCwvLTNiyt/ECO0qdDo47ICm LnDuaR0f2jdzuC5By97Ky2nDgGLLJcl8UtI+yDzrYgnbPileBvM= =WU2D -----END PGP SIGNATURE----- Wed Aug 21 00:52:02 UTC 2024 I: Checking whether the package is not for us Wed Aug 21 00:52:02 UTC 2024 I: Starting 1st build on remote node infom01-amd64.debian.net. Wed Aug 21 00:52:02 UTC 2024 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Wed Aug 21 00:53:26 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Aug 20 12:52:05 -12 2024 I: pbuilder-time-stamp: 1724201525 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [vsearch_2.28.1-3.dsc] I: copying [./vsearch_2.28.1.orig.tar.gz] I: copying [./vsearch_2.28.1-3.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Jul 2 14:11:04 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./vsearch_2.28.1-3.dsc: no acceptable signature found dpkg-source: info: extracting vsearch in vsearch-2.28.1 dpkg-source: info: unpacking vsearch_2.28.1.orig.tar.gz dpkg-source: info: unpacking vsearch_2.28.1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying typo.patch dpkg-source: info: applying simde I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1473346/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='cf335634277e4c628b560e43ed908c47' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1473346' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WcxIglxL/pbuilderrc_zRoF --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WcxIglxL/b1 --logfile b1/build.log vsearch_2.28.1-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-23-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.99-1 (2024-07-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1473346/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, zlib1g-dev, libbz2-dev, libtext-markdown-perl, ghostscript, time dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19730 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-little-endian; however: Package architecture-is-little-endian is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libtext-markdown-perl; however: Package libtext-markdown-perl is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on time; however: Package time is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcups2t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libgs-common{a} libgs10{a} libgs10-common{a} libgssapi-krb5-2{a} libice6{a} libicu72{a} libidn12{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libpaper1{a} libpipeline1{a} libpng16-16t64{a} libsharpyuv0{a} libsm6{a} libtext-markdown-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libxt6t64{a} m4{a} man-db{a} po-debconf{a} poppler-data{a} sensible-utils{a} time{a} ucf{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc curl dbus fonts-droid-fallback krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx wget 0 packages upgraded, 83 newly installed, 0 to remove and 0 not upgraded. Need to get 43.7 MB of archives. After unpacking 150 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 poppler-data all 0.4.12-1 [1601 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-7 [96.8 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-3 [1414 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 architecture-properties amd64 0.1.1+b1 [1888 B] Get: 14 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.19 [89.7 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 25 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.19 [916 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1 [23.0 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b4 [300 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 41 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libgs-common all 10.03.1~dfsg-2 [148 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libgs10-common all 10.03.1~dfsg-2 [474 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libavahi-common-data amd64 0.8-13+b2 [112 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libavahi-common3 amd64 0.8-13+b2 [43.3 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libdbus-1-3 amd64 1.14.10-4+b1 [203 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libavahi-client3 amd64 0.8-13+b2 [47.0 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 52 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libcups2t64 amd64 2.4.10-1 [249 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libidn12 amd64 1.42-2 [80.4 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libijs-0.35 amd64 0.35-15.1+b1 [15.1 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libjbig2dec0 amd64 0.20-1+b2 [64.3 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libpaper1 amd64 1.1.29+b1 [12.9 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.21-1 [47.3 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2 [144 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.0.10-1+b1 [56.7 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1+b1 [33.6 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2 [187 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libgs10 amd64 10.03.1~dfsg-2 [2543 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 ghostscript amd64 10.03.1~dfsg-2 [50.2 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libtext-markdown-perl all 1.000031-4 [32.1 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 time amd64 1.9-0.2 [50.8 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] Fetched 43.7 MB in 2s (22.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package poppler-data. 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Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libice6:amd64 (2:1.0.10-1+b1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up libavahi-common3:amd64 (0.8-13+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libsm6:amd64 (2:1.2.3-1+b1) ... Setting up libavahi-client3:amd64 (0.8-13+b2) ... Setting up libpaper1:amd64 (1.1.29+b1) ... Creating config file /etc/papersize with new version Setting up po-debconf (1.0.21+nmu1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/vsearch-2.28.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../vsearch_2.28.1-3_source.changes dpkg-buildpackage: info: source package vsearch dpkg-buildpackage: info: source version 2.28.1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules execute_after_dh_clean make[1]: Entering directory '/build/reproducible-path/vsearch-2.28.1' if [ -d test ] ; then find test -mindepth 1 -not -name '*.sh' -delete ; fi rm -f *.out make[1]: Leaving directory '/build/reproducible-path/vsearch-2.28.1' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:97: installing './compile' configure.ac:6: installing './config.guess' configure.ac:6: installing './config.sub' configure.ac:7: installing './install-sh' configure.ac:7: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for ranlib... ranlib checking for pthread_create in -lpthread... yes checking for dlopen in -ldl... yes checking for GetProcessMemoryInfo in -lpsapi... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for getopt.h... yes checking for fcntl.h... yes checking for float.h... yes checking for regex.h... yes checking for ctype.h... yes checking for locale.h... yes checking for limits.h... yes checking for string.h... (cached) yes checking for sys/time.h... yes checking for dlfcn.h... yes checking for pthread.h... yes checking for inline... inline checking for size_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for uint8_t... yes checking for GNU libc compatible malloc... yes checking for working strtod... yes checking for working alloca.h... yes checking for alloca... yes checking for GNU libc compatible realloc... yes checking for memmove... yes checking for memcpy... yes checking for posix_memalign... yes checking for gettimeofday... yes checking for localtime... yes checking for memchr... yes checking for memset... yes checking for pow... yes checking for regcomp... yes checking for strcasecmp... yes checking for strchr... yes checking for strcspn... yes checking for sysinfo... yes checking for bzlib.h... yes checking for zlib.h... yes checking for ps2pdf... yes checking for windows.h... no checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating man/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/vsearch-2.28.1' make all-recursive make[2]: Entering directory '/build/reproducible-path/vsearch-2.28.1' Making all in src make[3]: Entering directory '/build/reproducible-path/vsearch-2.28.1/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o align.o align.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o align_simd.o align_simd.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o allpairs.o allpairs.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o arch.o arch.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o attributes.o attributes.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o bitmap.o bitmap.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o chimera.o chimera.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o cluster.o cluster.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o cut.o cut.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o db.o db.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o dbhash.o dbhash.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o dbindex.o dbindex.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o derep.o derep.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o derepsmallmem.o derepsmallmem.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o dynlibs.o dynlibs.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o eestats.o eestats.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o fa2fq.o fa2fq.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o fasta.o fasta.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o fastq.o fastq.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o fastqjoin.o fastqjoin.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o fastqops.o fastqops.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o fastx.o fastx.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o filter.o filter.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o getseq.o getseq.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o kmerhash.o kmerhash.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o linmemalign.o linmemalign.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o maps.o maps.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o mask.o mask.cc gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o md5.o md5.c g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o mergepairs.o mergepairs.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o minheap.o minheap.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o msa.o msa.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o orient.o orient.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o otutable.o otutable.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o rerep.o rerep.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o results.o results.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o search.o search.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o searchcore.o searchcore.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o searchexact.o searchexact.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o sffconvert.o sffconvert.cc gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sha1.o sha1.c g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o showalign.o showalign.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o shuffle.o shuffle.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o sintax.o sintax.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o sortbylength.o sortbylength.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o sortbysize.o sortbysize.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o subsample.o subsample.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o tax.o tax.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o udb.o udb.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o unique.o unique.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o userfields.o userfields.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o util.o util.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o vsearch.o vsearch.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -Wno-sign-compare -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o libcityhash_a-city.o `test -f 'city.cc' || echo './'`city.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -mssse3 -DSSSE3 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o libcpu_ssse3_a-cpu.o `test -f 'cpu.cc' || echo './'`cpu.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -msse2 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o libcpu_sse2_a-cpu.o `test -f 'cpu.cc' || echo './'`cpu.cc rm -f libcityhash.a ar cru libcityhash.a libcityhash_a-city.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcityhash.a rm -f libcpu_ssse3.a ar cru libcpu_ssse3.a libcpu_ssse3_a-cpu.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcpu_ssse3.a rm -f libcpu_sse2.a ar cru libcpu_sse2.a libcpu_sse2_a-cpu.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcpu_sse2.a g++ -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -Wl,-z,relro -Wl,-z,now -flto -o ../bin/vsearch align.o align_simd.o allpairs.o arch.o attributes.o bitmap.o chimera.o cluster.o cut.o db.o dbhash.o dbindex.o derep.o derepsmallmem.o dynlibs.o eestats.o fa2fq.o fasta.o fastq.o fastqjoin.o fastqops.o fastx.o filter.o getseq.o kmerhash.o linmemalign.o maps.o mask.o md5.o mergepairs.o minheap.o msa.o orient.o otutable.o rerep.o results.o search.o searchcore.o searchexact.o sffconvert.o sha1.o showalign.o shuffle.o sintax.o sortbylength.o sortbysize.o subsample.o tax.o udb.o unique.o userfields.o util.o vsearch.o libcityhash.a libcpu_ssse3.a libcpu_sse2.a -ldl -lpthread lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information make[3]: Leaving directory '/build/reproducible-path/vsearch-2.28.1/src' Making all in man make[3]: Entering directory '/build/reproducible-path/vsearch-2.28.1/man' sed -e 's/\\-/-/g' vsearch.1 | \ iconv -f UTF-8 -t ISO-8859-1 | \ groff -W space -t -m mandoc -T ps -P -pa4 | ps2pdf - vsearch_manual.pdf troff::3601: warning [p 41, 6.3i]: cannot adjust line make[3]: Leaving directory '/build/reproducible-path/vsearch-2.28.1/man' make[3]: Entering directory '/build/reproducible-path/vsearch-2.28.1' make[3]: Leaving directory '/build/reproducible-path/vsearch-2.28.1' make[2]: Leaving directory '/build/reproducible-path/vsearch-2.28.1' make[1]: Leaving directory '/build/reproducible-path/vsearch-2.28.1' debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/reproducible-path/vsearch-2.28.1' markdown README.md > README.html # Remove redundant travis-build URL sed -i 1d README.html make[1]: Leaving directory '/build/reproducible-path/vsearch-2.28.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/vsearch-2.28.1' if [ -d /usr/share/vsearch/data ] ; then \ mkdir -p ../vsearch-data && \ for datadir in `find /usr/share/vsearch/data -type d | sed -e "s#/usr/share/vsearch/data/*##" -e "/^$/d"` ; do mkdir -p ../vsearch-data/${datadir} ; done && \ for datafile in `find /usr/share/vsearch/data -type f` ; do \ ln -s ${datafile} `echo ${datafile} | sed -e "s#/usr/share/vsearch/data/#../vsearch-data/#"` ; \ done && \ zcat ../vsearch-data/BioMarKs.fsa.gz > ../vsearch-data/BioMarKs.fsa && \ cd test && \ for t in *.sh ; do \ bash $t v ; \ done && \ cd .. && \ rm -rf ../vsearch-data ; \ fi make[1]: Leaving directory '/build/reproducible-path/vsearch-2.28.1' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j12 install DESTDIR=/build/reproducible-path/vsearch-2.28.1/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/vsearch-2.28.1' Making install in src make[2]: Entering directory '/build/reproducible-path/vsearch-2.28.1/src' make[3]: Entering directory '/build/reproducible-path/vsearch-2.28.1/src' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/vsearch-2.28.1/debian/tmp/usr/bin' /usr/bin/install -c ../bin/vsearch '/build/reproducible-path/vsearch-2.28.1/debian/tmp/usr/bin' make[3]: Leaving directory '/build/reproducible-path/vsearch-2.28.1/src' make[2]: Leaving directory '/build/reproducible-path/vsearch-2.28.1/src' Making install in man make[2]: Entering directory '/build/reproducible-path/vsearch-2.28.1/man' make[3]: Entering directory '/build/reproducible-path/vsearch-2.28.1/man' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/vsearch-2.28.1/debian/tmp/usr/share/doc/vsearch' /usr/bin/mkdir -p '/build/reproducible-path/vsearch-2.28.1/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 vsearch_manual.pdf '/build/reproducible-path/vsearch-2.28.1/debian/tmp/usr/share/doc/vsearch' /usr/bin/install -c -m 644 vsearch.1 '/build/reproducible-path/vsearch-2.28.1/debian/tmp/usr/share/man/man1' make[3]: Leaving directory '/build/reproducible-path/vsearch-2.28.1/man' make[2]: Leaving directory '/build/reproducible-path/vsearch-2.28.1/man' make[2]: Entering directory '/build/reproducible-path/vsearch-2.28.1' make[3]: Entering directory '/build/reproducible-path/vsearch-2.28.1' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/vsearch-2.28.1' make[2]: Leaving directory '/build/reproducible-path/vsearch-2.28.1' make[1]: Leaving directory '/build/reproducible-path/vsearch-2.28.1' dh_install debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/vsearch-2.28.1' # tweak path to vsearch binary in test scripts if [ -d test ] ; then \ mkdir -p /build/reproducible-path/vsearch-2.28.1/debian/vsearch/usr/share/doc/vsearch/test ; \ for tst in test/*.sh ; do sed 's?\.\./bin/vsearch?/usr/bin/vsearch?' ${tst} > /build/reproducible-path/vsearch-2.28.1/debian/vsearch/usr/share/doc/vsearch/${tst} ; done ; \ fi make[1]: Leaving directory '/build/reproducible-path/vsearch-2.28.1' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/vsearch-2.28.1' dpkg-query: no packages found matching libsimde-dev dh_gencontrol -- -Vsimde:Built-Using="" dpkg-gencontrol: warning: Depends field of package vsearch-examples: substitution variable ${shlibs:Depends} used, but is not defined make[1]: Leaving directory '/build/reproducible-path/vsearch-2.28.1' dh_md5sums dh_builddeb dpkg-deb: building package 'vsearch' in '../vsearch_2.28.1-3_amd64.deb'. dpkg-deb: building package 'vsearch-dbgsym' in '../vsearch-dbgsym_2.28.1-3_amd64.deb'. dpkg-deb: building package 'vsearch-examples' in '../vsearch-examples_2.28.1-3_all.deb'. dpkg-genbuildinfo --build=binary -O../vsearch_2.28.1-3_amd64.buildinfo dpkg-genchanges --build=binary -O../vsearch_2.28.1-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1473346 and its subdirectories I: Current time: Tue Aug 20 12:53:25 -12 2024 I: pbuilder-time-stamp: 1724201605 Wed Aug 21 00:53:27 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Wed Aug 21 00:53:27 UTC 2024 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Wed Aug 21 00:55:25 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. Wed Aug 21 00:55:25 UTC 2024 I: vsearch_2.28.1-3_amd64.changes: Format: 1.8 Date: Mon, 01 Jul 2024 14:37:54 +0200 Source: vsearch Binary: vsearch vsearch-dbgsym vsearch-examples Architecture: amd64 all Version: 2.28.1-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: vsearch - tool for processing metagenomic sequences vsearch-examples - Test Data for vsearch tool for processing metagenomic sequences Changes: vsearch (2.28.1-3) unstable; urgency=medium . * Team upload. * d/{control,rules}: this is a GPL package, so document the libsimde- dev vesion used to compile. * Upload to unstable. Checksums-Sha1: 9d132b18de7aa6bcd89fed629b2b2d606335f575 631656 vsearch-dbgsym_2.28.1-3_amd64.deb 3bd1b333dddcfa38a9fdfe088f5152df1d8edfa4 3479388 vsearch-examples_2.28.1-3_all.deb bb020709dcd7397a89fc7312f6199fbf161aacc3 6978 vsearch_2.28.1-3_amd64.buildinfo 92e14a5d6282e05c7aa5639ac94c5e0362ecf285 406328 vsearch_2.28.1-3_amd64.deb Checksums-Sha256: ee40c3222d16cd841006f02c9ddb76126a6d192fc1e911fbc992ffc94440fe51 631656 vsearch-dbgsym_2.28.1-3_amd64.deb be7b3d414347a034b2b2729836e00219ab7c804d3cfc8ab6091df9a115481cdc 3479388 vsearch-examples_2.28.1-3_all.deb 96894d67196c7f17c6b78f56eca8a8eacbd5421f834019bb79c603cab91c8545 6978 vsearch_2.28.1-3_amd64.buildinfo b70cb0e0545f308ccc4454a64f031f7138e0bc4b810658b7b979e9265f8f5d51 406328 vsearch_2.28.1-3_amd64.deb Files: 462d8a1e6212daffe805ea47ce1547e9 631656 debug optional vsearch-dbgsym_2.28.1-3_amd64.deb 7917139fb45ccd4e510ba73784e9960e 3479388 science optional vsearch-examples_2.28.1-3_all.deb be972d1801ee44ae6174f2fc954147fb 6978 science optional vsearch_2.28.1-3_amd64.buildinfo a7a0ddeebc6bdd60bf6e7fdbfa2eb2da 406328 science optional vsearch_2.28.1-3_amd64.deb Wed Aug 21 00:55:28 UTC 2024 I: diffoscope 276 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_33-26458.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.WcxIglxL/vsearch_2.28.1-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.WcxIglxL/vsearch_2.28.1-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.WcxIglxL/vsearch_2.28.1-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.WcxIglxL/b1/vsearch_2.28.1-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.WcxIglxL/b2/vsearch_2.28.1-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.761s) 0.761s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.380s) 0.380s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1.788s CPU time consumed: 1.346s Wed Aug 21 00:55:30 UTC 2024 I: diffoscope 276 found no differences in the changes files, and a .buildinfo file also exists. Wed Aug 21 00:55:30 UTC 2024 I: vsearch from unstable built successfully and reproducibly on amd64. Wed Aug 21 00:55:32 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Aug 21 00:55:32 UTC 2024 I: Submitting 8.0K b1/vsearch_2.28.1-3_amd64.buildinfo.asc Wed Aug 21 00:55:33 UTC 2024 I: Submitting 8.0K b2/vsearch_2.28.1-3_amd64.buildinfo.asc Wed Aug 21 00:55:34 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Aug 21 00:55:34 UTC 2024 I: Done submitting .buildinfo files. Wed Aug 21 00:55:34 UTC 2024 I: Removing signed vsearch_2.28.1-3_amd64.buildinfo.asc files: removed './b1/vsearch_2.28.1-3_amd64.buildinfo.asc' removed './b2/vsearch_2.28.1-3_amd64.buildinfo.asc'