Thu May 9 00:05:55 UTC 2024 I: starting to build vsearch/unstable/amd64 on jenkins on '2024-05-09 00:05' Thu May 9 00:05:55 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_33/11493/console.log Thu May 9 00:05:55 UTC 2024 I: Downloading source for unstable/vsearch=2.28.1-1 --2024-05-09 00:05:55-- http://deb.debian.org/debian/pool/main/v/vsearch/vsearch_2.28.1-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2317 (2.3K) [text/prs.lines.tag] Saving to: ‘vsearch_2.28.1-1.dsc’ 0K .. 100% 276M=0s 2024-05-09 00:05:55 (276 MB/s) - ‘vsearch_2.28.1-1.dsc’ saved [2317/2317] Thu May 9 00:05:55 UTC 2024 I: vsearch_2.28.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: vsearch Binary: vsearch, vsearch-examples Architecture: any-amd64 arm64 ppc64el all Version: 2.28.1-1 Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille , Étienne Mollier Homepage: https://github.com/torognes/vsearch/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/vsearch Vcs-Git: https://salsa.debian.org/med-team/vsearch.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, markdown, ghostscript, time Package-List: vsearch deb science optional arch=any-amd64,arm64,ppc64el vsearch-examples deb science optional arch=all Checksums-Sha1: b972ec90aa54ecd3c08632ae8390e1f69331d957 272918 vsearch_2.28.1.orig.tar.gz 50f2505aee3410746ba333793c98f244770043b6 1631580 vsearch_2.28.1-1.debian.tar.xz Checksums-Sha256: 4f8bf0ad43fef77e573d152b59f55a1f81eb84c22d6545911757e6108f8de21c 272918 vsearch_2.28.1.orig.tar.gz be88a74822e3ac4dfcdf36756dd6b7ec1ae06c244dd84caa6d8292cfe3dda000 1631580 vsearch_2.28.1-1.debian.tar.xz Files: f9308f70f55e9c90ba4800ca115be1df 272918 vsearch_2.28.1.orig.tar.gz b082776a5e44b3e7cc0fcfff9a632c34 1631580 vsearch_2.28.1-1.debian.tar.xz Dgit: 3712467f652eb2d64b8e94b4bbc2f81adbfec7f3 debian archive/debian/2.28.1-1 https://git.dgit.debian.org/vsearch -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmY7x84UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdoVgg/+MfdRk4xhUaXzdBECs1DjB7KzlD6E u+Ry+Ay7FRb9/1ldE0x+NcnjjCLNps1ZngQZwsHb4BAZ1rbzON4EhWrE8qcVuRMX ZLUhywjY3r5cDMTnbaX/mM7gHFBvF1g4rlSdlXspqk5jWHA/5hIzF0DwL4KOuLkj hQS1Aio3s1CvhHmuqlcO0LBLJVvGKr2rtNhYLBZDifNP6JpnH/ebb27zWFBSQfyM 7lr4n8uzA0TY5wdoUpQlXpcSIG/zH9Z6nnZDPQF2tFbGwAOFNNskq0az6i+0YFMl EnYVXW0liQ7o99a5PaCsfnMwDbOlK0Bllwa1D2vTP1J/365tzxfD9DdawnxhnwHz IBgFpjtd+9bekqGzkQgIanwxv1rClheZa96J0uFqxI7qNKY+zoyiNHrlICl36hWK rYsjY2j4owXv7rqNfG5Q3kEjFajSnFfS+xHiwQ1MX5ocJ66wOz0j4yuLoQWoGSzF nyA2ErhYet5AkN8vWkhkn60QS9pqlbwzCdMniocv6thUT026sxZZd5beARhOdK1i oEIRw1BPanab2SXR0HHGMzbg0LW87VjKF0YVieny7yAS9qFQZC/T9/XxdYCf5HYc FO4C8m7TKidBvqrw7IYQwdAFEFTzEVlyQMZYzk21uSU9Bctw1Fxmw5ad3PAZjyIq R9+p2RrtFumXA90= =wUEt -----END PGP SIGNATURE----- Thu May 9 00:05:55 UTC 2024 I: Checking whether the package is not for us Thu May 9 00:05:55 UTC 2024 I: Starting 1st build on remote node infom01-amd64.debian.net. Thu May 9 00:05:55 UTC 2024 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Thu May 9 00:12:44 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed May 8 12:10:57 -12 2024 I: pbuilder-time-stamp: 1715213457 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [vsearch_2.28.1-1.dsc] I: copying [./vsearch_2.28.1.orig.tar.gz] I: copying [./vsearch_2.28.1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed May 8 18:43:26 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./vsearch_2.28.1-1.dsc: no acceptable signature found dpkg-source: info: extracting vsearch in vsearch-2.28.1 dpkg-source: info: unpacking vsearch_2.28.1.orig.tar.gz dpkg-source: info: unpacking vsearch_2.28.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying typo.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3901881/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='0a4bd5b0a4174d36aae346bd60dc82fd' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3901881' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.jDKoaHkX/pbuilderrc_QMP6 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.jDKoaHkX/b1 --logfile b1/build.log vsearch_2.28.1-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-21-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 8 07:42 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3901881/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, markdown, ghostscript, time dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on markdown; however: Package markdown is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on time; however: Package time is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcom-err2{a} libcups2t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libgs-common{a} libgs10{a} libgs10-common{a} libgssapi-krb5-2{a} libice6{a} libicu72{a} libidn12{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libpaper1{a} libpipeline1{a} libpng16-16t64{a} libsharpyuv0{a} libsm6{a} libsub-override-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libxt6t64{a} m4{a} man-db{a} markdown{a} po-debconf{a} poppler-data{a} sensible-utils{a} time{a} ucf{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc curl dbus fonts-droid-fallback krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx wget 0 packages upgraded, 84 newly installed, 0 to remove and 0 not upgraded. Need to get 43.1 MB of archives. After unpacking 149 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 poppler-data all 0.4.12-1 [1601 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 25 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1 [23.0 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 41 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libgs-common all 10.03.0~dfsg-1 [148 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libgs10-common all 10.03.0~dfsg-1 [474 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libavahi-common-data amd64 0.8-13+b2 [112 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libavahi-common3 amd64 0.8-13+b2 [43.3 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libdbus-1-3 amd64 1.14.10-4+b1 [203 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libavahi-client3 amd64 0.8-13+b2 [47.0 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1~rc2-1 [22.6 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 52 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libcups2t64 amd64 2.4.7-1.2+b1 [247 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libidn12 amd64 1.42-2 [80.4 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libijs-0.35 amd64 0.35-15.1+b1 [15.1 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libjbig2dec0 amd64 0.20-1+b2 [64.3 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libpaper1 amd64 1.1.29+b1 [12.9 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-1 [144 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.0.10-1+b1 [56.7 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1+b1 [33.6 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2 [187 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libgs10 amd64 10.03.0~dfsg-1 [2509 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 ghostscript amd64 10.03.0~dfsg-1 [50.1 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-5.1 [31.3 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 markdown all 1.0.1-12 [17.7 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 time amd64 1.9-0.2 [50.8 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Fetched 43.1 MB in 1s (55.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package poppler-data. 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Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up markdown (1.0.1-12) ... Setting up libbz2-dev:amd64 (1.0.8-5.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libice6:amd64 (2:1.0.10-1+b1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3+b1) ... Setting up libxcb1:amd64 (1.17.0-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libavahi-common3:amd64 (0.8-13+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up libx11-6:amd64 (2:1.8.7-1+b1) ... Setting up libsm6:amd64 (2:1.2.3-1+b1) ... Setting up libavahi-client3:amd64 (0.8-13+b2) ... Setting up libpaper1:amd64 (1.1.29+b1) ... Creating config file /etc/papersize with new version Setting up po-debconf (1.0.21+nmu1) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxt6t64:amd64 (1:1.2.1-1.2) ... Setting up libcups2t64:amd64 (2.4.7-1.2+b1) ... Setting up debhelper (13.15.3) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up libgs10-common (10.03.0~dfsg-1) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up libgs10:amd64 (10.03.0~dfsg-1) ... Setting up ghostscript (10.03.0~dfsg-1) ... Processing triggers for libc-bin (2.38-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/vsearch-2.28.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../vsearch_2.28.1-1_source.changes dpkg-buildpackage: info: source package vsearch dpkg-buildpackage: info: source version 2.28.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/vsearch-2.28.1' dh_clean rm -rf data/simm if [ -d test ] ; then find test -mindepth 1 -not -name '*.sh' -delete ; fi rm -f README.html data/README.html rm -f *.out make[1]: Leaving directory '/build/reproducible-path/vsearch-2.28.1' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:95: installing './compile' configure.ac:6: installing './config.guess' configure.ac:6: installing './config.sub' configure.ac:7: installing './install-sh' configure.ac:7: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for ranlib... ranlib checking for pthread_create in -lpthread... yes checking for dlopen in -ldl... yes checking for GetProcessMemoryInfo in -lpsapi... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for getopt.h... yes checking for fcntl.h... yes checking for float.h... yes checking for regex.h... yes checking for ctype.h... yes checking for locale.h... yes checking for limits.h... yes checking for string.h... (cached) yes checking for sys/time.h... yes checking for dlfcn.h... yes checking for pthread.h... yes checking for inline... inline checking for size_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for uint8_t... yes checking for GNU libc compatible malloc... yes checking for working strtod... yes checking for working alloca.h... yes checking for alloca... yes checking for GNU libc compatible realloc... yes checking for memmove... yes checking for memcpy... yes checking for posix_memalign... yes checking for gettimeofday... yes checking for localtime... yes checking for memchr... yes checking for memset... yes checking for pow... yes checking for regcomp... yes checking for strcasecmp... yes checking for strchr... yes checking for strcspn... yes checking for sysinfo... yes checking for bzlib.h... yes checking for zlib.h... yes checking for ps2pdf... yes checking for windows.h... no checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating man/Makefile config.status: creating config.h config.status: executing depfiles commands debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/vsearch-2.28.1' dh_auto_build make -j12 make[2]: Entering directory '/build/reproducible-path/vsearch-2.28.1' make all-recursive make[3]: Entering directory '/build/reproducible-path/vsearch-2.28.1' Making all in src make[4]: Entering directory '/build/reproducible-path/vsearch-2.28.1/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o align.o align.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o align_simd.o align_simd.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o allpairs.o allpairs.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o arch.o arch.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o attributes.o attributes.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o bitmap.o bitmap.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o chimera.o chimera.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o cluster.o cluster.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o cut.o cut.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o db.o db.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o dbhash.o dbhash.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o dbindex.o dbindex.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o derep.o derep.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o derepsmallmem.o derepsmallmem.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o dynlibs.o dynlibs.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o eestats.o eestats.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o fa2fq.o fa2fq.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o fasta.o fasta.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o fastq.o fastq.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o fastqjoin.o fastqjoin.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o fastqops.o fastqops.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o fastx.o fastx.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o filter.o filter.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o getseq.o getseq.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o kmerhash.o kmerhash.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o linmemalign.o linmemalign.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o maps.o maps.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o mask.o mask.cc gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o md5.o md5.c g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o mergepairs.o mergepairs.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o minheap.o minheap.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o msa.o msa.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o orient.o orient.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o otutable.o otutable.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o rerep.o rerep.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o results.o results.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o search.o search.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o searchcore.o searchcore.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o searchexact.o searchexact.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o sffconvert.o sffconvert.cc gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sha1.o sha1.c g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o showalign.o showalign.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o shuffle.o shuffle.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o sintax.o sintax.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o sortbylength.o sortbylength.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o sortbysize.o sortbysize.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o subsample.o subsample.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o tax.o tax.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o udb.o udb.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o unique.o unique.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o userfields.o userfields.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o util.o util.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o vsearch.o vsearch.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -Wno-sign-compare -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o libcityhash_a-city.o `test -f 'city.cc' || echo './'`city.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -mssse3 -DSSSE3 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o libcpu_ssse3_a-cpu.o `test -f 'cpu.cc' || echo './'`cpu.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -msse2 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -c -o libcpu_sse2_a-cpu.o `test -f 'cpu.cc' || echo './'`cpu.cc rm -f libcityhash.a ar cru libcityhash.a libcityhash_a-city.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcityhash.a rm -f libcpu_sse2.a ar cru libcpu_sse2.a libcpu_sse2_a-cpu.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcpu_sse2.a rm -f libcpu_ssse3.a ar cru libcpu_ssse3.a libcpu_ssse3_a-cpu.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcpu_ssse3.a g++ -Wall -Wextra -Wpedantic -march=x86-64 -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.28.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -std=c++11 -Wl,-z,relro -Wl,-z,now -flto -o ../bin/vsearch align.o align_simd.o allpairs.o arch.o attributes.o bitmap.o chimera.o cluster.o cut.o db.o dbhash.o dbindex.o derep.o derepsmallmem.o dynlibs.o eestats.o fa2fq.o fasta.o fastq.o fastqjoin.o fastqops.o fastx.o filter.o getseq.o kmerhash.o linmemalign.o maps.o mask.o md5.o mergepairs.o minheap.o msa.o orient.o otutable.o rerep.o results.o search.o searchcore.o searchexact.o sffconvert.o sha1.o showalign.o shuffle.o sintax.o sortbylength.o sortbysize.o subsample.o tax.o udb.o unique.o userfields.o util.o vsearch.o libcityhash.a libcpu_ssse3.a libcpu_sse2.a -ldl -lpthread lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information make[4]: Leaving directory '/build/reproducible-path/vsearch-2.28.1/src' Making all in man make[4]: Entering directory '/build/reproducible-path/vsearch-2.28.1/man' sed -e 's/\\-/-/g' vsearch.1 | \ iconv -f UTF-8 -t ISO-8859-1 | \ groff -W space -t -m mandoc -T ps -P -pa4 | ps2pdf - vsearch_manual.pdf troff::3601: warning [p 41, 6.3i]: cannot adjust line make[4]: Leaving directory '/build/reproducible-path/vsearch-2.28.1/man' make[4]: Entering directory '/build/reproducible-path/vsearch-2.28.1' make[4]: Leaving directory '/build/reproducible-path/vsearch-2.28.1' make[3]: Leaving directory '/build/reproducible-path/vsearch-2.28.1' make[2]: Leaving directory '/build/reproducible-path/vsearch-2.28.1' markdown README.md > README.html # Remove redundant travis-build URL sed -i 1d README.html make[1]: Leaving directory '/build/reproducible-path/vsearch-2.28.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/vsearch-2.28.1' if [ -d /usr/share/vsearch/data ] ; then \ mkdir -p ../vsearch-data && \ for datadir in `find /usr/share/vsearch/data -type d | sed -e "s#/usr/share/vsearch/data/*##" -e "/^$/d"` ; do mkdir -p ../vsearch-data/${datadir} ; done && \ for datafile in `find /usr/share/vsearch/data -type f` ; do \ ln -s ${datafile} `echo ${datafile} | sed -e "s#/usr/share/vsearch/data/#../vsearch-data/#"` ; \ done && \ zcat ../vsearch-data/BioMarKs.fsa.gz > ../vsearch-data/BioMarKs.fsa && \ cd test && \ for t in *.sh ; do \ bash $t v ; \ done && \ cd .. && \ rm -rf ../vsearch-data ; \ fi make[1]: Leaving directory '/build/reproducible-path/vsearch-2.28.1' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j12 install DESTDIR=/build/reproducible-path/vsearch-2.28.1/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/vsearch-2.28.1' Making install in src make[2]: Entering directory '/build/reproducible-path/vsearch-2.28.1/src' make[3]: Entering directory '/build/reproducible-path/vsearch-2.28.1/src' /usr/bin/mkdir -p '/build/reproducible-path/vsearch-2.28.1/debian/tmp/usr/bin' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/install -c ../bin/vsearch '/build/reproducible-path/vsearch-2.28.1/debian/tmp/usr/bin' make[3]: Leaving directory '/build/reproducible-path/vsearch-2.28.1/src' make[2]: Leaving directory '/build/reproducible-path/vsearch-2.28.1/src' Making install in man make[2]: Entering directory '/build/reproducible-path/vsearch-2.28.1/man' make[3]: Entering directory '/build/reproducible-path/vsearch-2.28.1/man' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/vsearch-2.28.1/debian/tmp/usr/share/doc/vsearch' /usr/bin/install -c -m 644 vsearch_manual.pdf '/build/reproducible-path/vsearch-2.28.1/debian/tmp/usr/share/doc/vsearch' /usr/bin/mkdir -p '/build/reproducible-path/vsearch-2.28.1/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 vsearch.1 '/build/reproducible-path/vsearch-2.28.1/debian/tmp/usr/share/man/man1' make[3]: Leaving directory '/build/reproducible-path/vsearch-2.28.1/man' make[2]: Leaving directory '/build/reproducible-path/vsearch-2.28.1/man' make[2]: Entering directory '/build/reproducible-path/vsearch-2.28.1' make[3]: Entering directory '/build/reproducible-path/vsearch-2.28.1' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/vsearch-2.28.1' make[2]: Leaving directory '/build/reproducible-path/vsearch-2.28.1' make[1]: Leaving directory '/build/reproducible-path/vsearch-2.28.1' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/vsearch-2.28.1' dh_install if [ -d test ] ; then \ # tweak path tp vsearch binary in test scripts \ mkdir -p /build/reproducible-path/vsearch-2.28.1/debian/vsearch/usr/share/doc/vsearch/test ; \ for tst in test/*.sh ; do sed 's?\.\./bin/vsearch?/usr/bin/vsearch?' ${tst} > /build/reproducible-path/vsearch-2.28.1/debian/vsearch/usr/share/doc/vsearch/${tst} ; done ; \ fi make[1]: Leaving directory '/build/reproducible-path/vsearch-2.28.1' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package vsearch-examples: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'vsearch' in '../vsearch_2.28.1-1_amd64.deb'. dpkg-deb: building package 'vsearch-dbgsym' in '../vsearch-dbgsym_2.28.1-1_amd64.deb'. dpkg-deb: building package 'vsearch-examples' in '../vsearch-examples_2.28.1-1_all.deb'. dpkg-genbuildinfo --build=binary -O../vsearch_2.28.1-1_amd64.buildinfo dpkg-genchanges --build=binary -O../vsearch_2.28.1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3901881 and its subdirectories I: Current time: Wed May 8 12:12:43 -12 2024 I: pbuilder-time-stamp: 1715213563 Thu May 9 00:12:45 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Thu May 9 00:12:45 UTC 2024 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Thu May 9 00:14:52 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. Thu May 9 00:14:53 UTC 2024 I: vsearch_2.28.1-1_amd64.changes: Format: 1.8 Date: Wed, 08 May 2024 20:39:33 +0200 Source: vsearch Binary: vsearch vsearch-dbgsym vsearch-examples Architecture: amd64 all Version: 2.28.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: vsearch - tool for processing metagenomic sequences vsearch-examples - Test Data for vsearch tool for processing metagenomic sequences Changes: vsearch (2.28.1-1) unstable; urgency=medium . * New upstream version 2.28.1 * typo.patch: new: fix typo caught by lintian. Checksums-Sha1: e18eede7747a15ffd139516bcf7ee979e9c621c8 629312 vsearch-dbgsym_2.28.1-1_amd64.deb 0f00ff2f7ea00e0094834e49741254ce2b814b74 3479072 vsearch-examples_2.28.1-1_all.deb 6e5343acbef58469e9fd7e5d3e0ec01864ad3bf8 7188 vsearch_2.28.1-1_amd64.buildinfo 16ffa9811ec991843beb090d143bb91e03c6e8cc 403040 vsearch_2.28.1-1_amd64.deb Checksums-Sha256: 3b0f9ad60684fb3ca8bc907207cb2d4716d003bd3d1b411756430109a0b2ac48 629312 vsearch-dbgsym_2.28.1-1_amd64.deb 517577dbaf344c8e977ef69263b3576ac7e2848205b27364163da31e74052bbf 3479072 vsearch-examples_2.28.1-1_all.deb d4fdec442af24028d1f8042dc457c71937b58faf885b8a0b90e347ffd4c0b056 7188 vsearch_2.28.1-1_amd64.buildinfo 5cceeb4bdf4f749c81635cd5ae497aa250d1d70db4a1ac15331105bcaa0add10 403040 vsearch_2.28.1-1_amd64.deb Files: 9b41656a3eeac4fb3ab39ac0c19d07fc 629312 debug optional vsearch-dbgsym_2.28.1-1_amd64.deb f428a792737e3a96aa82817d10975bb9 3479072 science optional vsearch-examples_2.28.1-1_all.deb 69a7b6443093f22dae21f5ffd13cb22d 7188 science optional vsearch_2.28.1-1_amd64.buildinfo c27fb443c1829f98369fd5572c765ecf 403040 science optional vsearch_2.28.1-1_amd64.deb Thu May 9 00:14:54 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_33-11493.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.jDKoaHkX/vsearch_2.28.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.jDKoaHkX/vsearch_2.28.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.jDKoaHkX/vsearch_2.28.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.jDKoaHkX/b1/vsearch_2.28.1-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.jDKoaHkX/b2/vsearch_2.28.1-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.426s) 0.426s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.065s) 0.065s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 785ms CPU time consumed: 786ms Thu May 9 00:14:55 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Thu May 9 00:14:55 UTC 2024 I: vsearch from unstable built successfully and reproducibly on amd64. Thu May 9 00:14:57 UTC 2024 I: Submitting .buildinfo files to external archives: Thu May 9 00:14:57 UTC 2024 I: Submitting 8.0K b1/vsearch_2.28.1-1_amd64.buildinfo.asc Thu May 9 00:14:57 UTC 2024 I: Submitting 8.0K b2/vsearch_2.28.1-1_amd64.buildinfo.asc Thu May 9 00:14:58 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 9 00:14:58 UTC 2024 I: Done submitting .buildinfo files. Thu May 9 00:14:58 UTC 2024 I: Removing signed vsearch_2.28.1-1_amd64.buildinfo.asc files: removed './b1/vsearch_2.28.1-1_amd64.buildinfo.asc' removed './b2/vsearch_2.28.1-1_amd64.buildinfo.asc'