Thu Sep 25 23:30:14 UTC 2025 I: starting to build umap-learn/unstable/amd64 on jenkins on '2025-09-25 23:30' Thu Sep 25 23:30:14 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_34/82538/console.log Thu Sep 25 23:30:14 UTC 2025 I: Downloading source for unstable/umap-learn=0.5.9.post2+dfsg-1 --2025-09-25 23:30:14-- http://deb.debian.org/debian/pool/main/u/umap-learn/umap-learn_0.5.9.post2%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2411 (2.4K) [text/prs.lines.tag] Saving to: ‘umap-learn_0.5.9.post2+dfsg-1.dsc’ 0K .. 100% 271M=0s 2025-09-25 23:30:14 (271 MB/s) - ‘umap-learn_0.5.9.post2+dfsg-1.dsc’ saved [2411/2411] Thu Sep 25 23:30:14 UTC 2025 I: umap-learn_0.5.9.post2+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: umap-learn Binary: umap-learn Architecture: all Version: 0.5.9.post2+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/lmcinnes/umap Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/umap-learn Vcs-Git: https://salsa.debian.org/med-team/umap-learn.git Testsuite: autopkgtest Testsuite-Triggers: file, mayavi2, python3-all, python3-matplotlib, python3-numba, python3-numpy, python3-seaborn, python3-sklearn, xauth, xvfb Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, python3-numpy, python3-scipy, python3-sklearn, python3-numba, python3-pynndescent (>= 0.5.13) , python3-tqdm , python3-pytest Package-List: umap-learn deb science optional arch=all Checksums-Sha1: b749d4846294ba18aa1d9e1149debc4f48753a2d 1466296 umap-learn_0.5.9.post2+dfsg.orig.tar.xz 896fecd719c469004e66419da6668a792029b886 7380 umap-learn_0.5.9.post2+dfsg-1.debian.tar.xz Checksums-Sha256: 49a6d245b46713855eb231097ce0de9c13a471bbbbb653c9db6c119e93550e75 1466296 umap-learn_0.5.9.post2+dfsg.orig.tar.xz 3523cd444b5c27da41e0393d3ecad35af3821e67a30fce1fd5022ce7cfa41f30 7380 umap-learn_0.5.9.post2+dfsg-1.debian.tar.xz Files: 8612b9b121efd367d1bcf9ae9a7af192 1466296 umap-learn_0.5.9.post2+dfsg.orig.tar.xz 857753459185e167f64d985fd6be3182 7380 umap-learn_0.5.9.post2+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmi1s2kSHGNydXNvZUBk ZWJpYW4ub3JnAAoJEDwmdj9sZ+biLBAP/jn9VPA9ZzzsAE7sbIouFfB3aU4edaXY jCAzfb0urK2vLTV4E2U1/gGbbmPCtg5T+Jk1Ivd6b8jlazp3ZNIH2Ybso+ufh1v7 84/2zsPwbLzv2ZP6PcfLohc8Z7DtngGpeTyYPgtxBSYsAjPfbrCjAqYv4R5ODZn1 uH3D70q/ox3cHn7CuEKVjsuYgf4Nz3lT8TCIqD9Jq6ALqHvimDw+FrYqmIE0AqbR F8dH4f8otgvqkSYXkYyxFJ+3f0DSjY9bK9rQFrIILGINAAX6AJC9fQkGcCkIkg7a mQ0Tyf2JUkPOaJ5KdSoUfglttKCUkEyNcqOm2Kdzm9Scuij+vY0bW/Qlg7tNWwDM zauWn894qk+DVhIyXcSA4nPd70V2G+5KHMqxxBn4QjXl6jgxlQp5Jyc4AOUGpbE0 tfEuogG7QxujNg2Hoa3ZuM+TVmoMVaNbOnQVz2ejFTvVczjCMqmH1nAls9Y1kzAK 2Zk4nl6uCzNp/wmY3MhMTQ5f3s65O/T5GQ1ImqHAOc3x+iWvWbK58mXgHUBl8U49 X9FUEEaGL+CRIDxBDBRVf2ufLGIwkw9/9VeKF7iTGf0wCIoK5LMNxZbXnc5vHzdd QnfvLpM6FaX2ITs0acWJ6oWJz5kATosjjvxllRpldDTppAov6FirUEgAt6iBNJTw SS3mz0c6HUlx =DC8d -----END PGP SIGNATURE----- Thu Sep 25 23:30:14 UTC 2025 I: Checking whether the package is not for us Thu Sep 25 23:30:14 UTC 2025 I: Starting 1st build on remote node infom02-amd64.debian.net. Thu Sep 25 23:30:14 UTC 2025 I: Preparing to do remote build '1' on infom02-amd64.debian.net. Thu Sep 25 23:34:32 UTC 2025 I: Deleting $TMPDIR on infom02-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Oct 28 17:53:16 -12 2026 I: pbuilder-time-stamp: 1793253196 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [umap-learn_0.5.9.post2+dfsg-1.dsc] I: copying [./umap-learn_0.5.9.post2+dfsg.orig.tar.xz] I: copying [./umap-learn_0.5.9.post2+dfsg-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./umap-learn_0.5.9.post2+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting umap-learn in umap-learn-0.5.9.post2+dfsg dpkg-source: info: unpacking umap-learn_0.5.9.post2+dfsg.orig.tar.xz dpkg-source: info: unpacking umap-learn_0.5.9.post2+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying disable-and-fix-incompatible-tests.patch dpkg-source: info: applying skip_tests_needing_tensorflow.patch dpkg-source: info: applying 3ca4cf8620e25ceb8b4602648f4092d7a904a282.patch dpkg-source: info: applying fix_further_tests.patch dpkg-source: info: applying fix-example.patch dpkg-source: info: applying older_sklearn I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3458161/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='0dbb3962d6534d828e7b5c82862eff84' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3458161' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tjvhON9g/pbuilderrc_kW1W --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tjvhON9g/b1 --logfile b1/build.log umap-learn_0.5.9.post2+dfsg-1.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom02-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3458161/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, python3-numpy, python3-scipy, python3-sklearn, python3-numba, python3-pynndescent (>= 0.5.13), python3-tqdm, python3-pytest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19919 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-sklearn; however: Package python3-sklearn is not installed. pbuilder-satisfydepends-dummy depends on python3-numba; however: Package python3-numba is not installed. pbuilder-satisfydepends-dummy depends on python3-pynndescent (>= 0.5.13); however: Package python3-pynndescent is not installed. pbuilder-satisfydepends-dummy depends on python3-tqdm; however: Package python3-tqdm is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libedit2{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhwloc15{a} libidn2-0{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap2{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpfm4{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtbb12{a} libtbbbind-2-5{a} libtbbmalloc2{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} libz3-4{a} llvm-19{a} llvm-19-linker-tools{a} llvm-19-runtime{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-decorator{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-joblib{a} python3-llvmlite{a} python3-minimal{a} python3-more-itertools{a} python3-numba{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygments{a} python3-pynndescent{a} python3-pytest{a} python3-scipy{a} python3-setuptools{a} python3-sklearn{a} python3-sklearn-lib{a} python3-threadpoolctl{a} python3-tqdm{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: binfmt-support ca-certificates curl krb5-locales libarchive-cpio-perl libhwloc-plugins libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults llvm-19-dev lynx numba-doc psmisc publicsuffix python3-matplotlib python3-pil python3-pip python3-pooch python3-psutil python3-yaml systemd wget 0 packages upgraded, 108 newly installed, 0 to remove and 0 not upgraded. Need to get 114 MB of archives. After unpacking 513 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1.2 [142 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 15.2.0-4 [862 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.2.4+ds-1.2 [5224 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-1 [95.2 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.27 [92.2 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-5 [540 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 43 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.27 [940 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 57 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.11.0-1 [73.7 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.10-2 [1484 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.16.0-1 [437 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libhwloc15 amd64 2.12.2-1 [164 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libllvm19 amd64 1:19.1.7-6 [25.9 MB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libpfm4 amd64 4.13.0+git106-g3e4031b-1 [372 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libtbbbind-2-5 amd64 2022.1.0-3 [14.0 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libtbbmalloc2 amd64 2022.1.0-3 [51.0 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libtbb12 amd64 2022.1.0-3 [93.1 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 llvm-19-runtime amd64 1:19.1.7-6 [550 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 llvm-19-linker-tools amd64 1:19.1.7-6 [1261 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 llvm-19 amd64 1:19.1.7-6 [16.3 MB] Get: 83 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 90 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 96 http://deb.debian.org/debian unstable/main amd64 python3-joblib all 1.4.2-5 [216 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 python3-llvmlite amd64 0.44.0-1 [231 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.15.3-1.1 [17.0 MB] Get: 99 http://deb.debian.org/debian unstable/main amd64 python3-numba amd64 0.61.2+dfsg-1 [1773 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3-sklearn-lib amd64 1.4.2+dfsg-8 [3980 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-sklearn all 1.4.2+dfsg-8 [2248 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-pynndescent amd64 0.5.13-1 [44.0 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.4.2-1 [266 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-tqdm all 4.67.1-6 [90.9 kB] Fetched 114 MB in 4s (28.8 MB/s) Preconfiguring packages ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../umap-learn_0.5.9.post2+dfsg-1_source.changes dpkg-buildpackage: info: source package umap-learn dpkg-buildpackage: info: source version 0.5.9.post2+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build/umap copying umap/utils.py -> /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build/umap copying umap/parametric_umap.py -> /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build/umap copying umap/aligned_umap.py -> /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build/umap copying umap/spectral.py -> /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build/umap copying umap/layouts.py -> /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build/umap copying umap/umap_.py -> /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build/umap copying umap/__init__.py -> /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build/umap copying umap/validation.py -> /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build/umap copying umap/sparse.py -> /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build/umap copying umap/plot.py -> /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build/umap copying umap/distances.py -> /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build/umap running egg_info creating umap_learn.egg-info writing umap_learn.egg-info/PKG-INFO writing dependency_links to umap_learn.egg-info/dependency_links.txt writing requirements to umap_learn.egg-info/requires.txt writing top-level names to umap_learn.egg-info/top_level.txt writing manifest file 'umap_learn.egg-info/SOURCES.txt' reading manifest file 'umap_learn.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' writing manifest file 'umap_learn.egg-info/SOURCES.txt' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/umap-learn-0.5.9.post2+dfsg' dh_auto_test -- --system=custom --test-args="PYTHONPATH={build_dir} {interpreter} -m pytest" I: pybuild base:311: PYTHONPATH=/build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.7, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/umap-learn-0.5.9.post2+dfsg configfile: pyproject.toml plugins: typeguard-4.4.4 collected 208 items umap/tests/test_aligned_umap.py ....s [ 2%] umap/tests/test_chunked_parallel_spatial_metric.py sssssssssssssssssssss [ 12%] sssssssssssssssssssss [ 22%] umap/tests/test_composite_models.py .s.. [ 24%] umap/tests/test_data_input.py . [ 25%] umap/tests/test_densmap.py .s.. [ 26%] umap/tests/test_parametric_umap.py ssssss [ 29%] umap/tests/test_plot.py s [ 30%] umap/tests/test_spectral.py s. [ 31%] umap/tests/test_umap_get_feature_names_out.py .... [ 33%] umap/tests/test_umap_metrics.py ............s.................s......... [ 52%] .. [ 53%] umap/tests/test_umap_nn.py ..sssssss.. [ 58%] umap/tests/test_umap_on_iris.py ............ [ 64%] umap/tests/test_umap_ops.py ................... [ 73%] umap/tests/test_umap_repeated_data.py ......... [ 77%] umap/tests/test_umap_trustworthiness.py .......... [ 82%] umap/tests/test_umap_validation_params.py .............................. [ 97%] ...... [100%] =============================== warnings summary =============================== umap/tests/test_chunked_parallel_spatial_metric.py:234 /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/umap/tests/test_chunked_parallel_spatial_metric.py:234: PytestUnknownMarkWarning: Unknown pytest.mark.benchmark - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.benchmark( umap/tests/test_chunked_parallel_spatial_metric.py:258 /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/umap/tests/test_chunked_parallel_spatial_metric.py:258: PytestUnknownMarkWarning: Unknown pytest.mark.benchmark - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.benchmark( umap/tests/test_chunked_parallel_spatial_metric.py:288 /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/umap/tests/test_chunked_parallel_spatial_metric.py:288: PytestUnknownMarkWarning: Unknown pytest.mark.benchmark - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.benchmark( umap/tests/test_chunked_parallel_spatial_metric.py:312 /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/umap/tests/test_chunked_parallel_spatial_metric.py:312: PytestUnknownMarkWarning: Unknown pytest.mark.benchmark - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.benchmark( umap/plot.py:20 /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/umap/plot.py:20: UserWarning: The umap.plot package requires extra plotting libraries to be installed. You can install these via pip using pip install umap-learn[plot] or via conda using conda install pandas matplotlib datashader bokeh holoviews colorcet scikit-image warn( umap/tests/test_aligned_umap.py::test_aligned_update /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/umap/aligned_umap.py:196: NumbaTypeSafetyWarning: unsafe cast from int64 to int32. Precision may be lost. if i in relation_dict: umap/tests/test_composite_models.py: 7 warnings umap/tests/test_densmap.py: 3 warnings umap/tests/test_umap_get_feature_names_out.py: 3 warnings umap/tests/test_umap_on_iris.py: 8 warnings umap/tests/test_umap_ops.py: 2 warnings umap/tests/test_umap_trustworthiness.py: 9 warnings /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/umap/umap_.py:1952: UserWarning: n_jobs value 1 overridden to 1 by setting random_state. Use no seed for parallelism. warn( umap/tests/test_umap_metrics.py::test_sokalmichener umap/tests/test_umap_metrics.py::test_sparse_sokalmichener /usr/lib/python3/dist-packages/scipy/spatial/distance.py:2322: DeprecationWarning: The sokalmichener metric is deprecated since SciPy 1.15.0 and will be removed in SciPy 1.17.0. Replace usage of 'sokalmichener(u, v)' with 'rogerstanimoto(u, v)'. return pdist_fn(X, out=out, **kwargs) umap/tests/test_umap_metrics.py::test_hellinger /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/umap/tests/test_umap_metrics.py:422: RuntimeWarning: invalid value encountered in sqrt dist_matrix = np.sqrt(dist_matrix) umap/tests/test_umap_on_iris.py::test_precomputed_transform_on_iris umap/tests/test_umap_on_iris.py::test_precomputed_sparse_transform_on_iris umap/tests/test_umap_ops.py::test_multi_component_layout_precomputed umap/tests/test_umap_ops.py::test_disconnected_data_precomputed[True-1] umap/tests/test_umap_ops.py::test_disconnected_data_precomputed[False-1] umap/tests/test_umap_trustworthiness.py::test_sparse_precomputed_metric_umap_trustworthiness umap/tests/test_umap_validation_params.py::test_umap_update_bad_params /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/umap/umap_.py:1865: UserWarning: using precomputed metric; inverse_transform will be unavailable warn("using precomputed metric; inverse_transform will be unavailable") umap/tests/test_umap_on_iris.py::test_precomputed_transform_on_iris umap/tests/test_umap_on_iris.py::test_precomputed_sparse_transform_on_iris /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/umap/umap_.py:3018: UserWarning: Transforming new data with precomputed metric. We are assuming the input data is a matrix of distances from the new points to the points in the training set. If the input matrix is sparse, it should contain distances from the new points to their nearest neighbours or approximate nearest neighbours in the training set. warn( umap/tests/test_umap_ops.py::test_multi_component_layout umap/tests/test_umap_ops.py::test_multi_component_layout_precomputed /usr/lib/python3/dist-packages/sklearn/manifold/_spectral_embedding.py:301: UserWarning: Graph is not fully connected, spectral embedding may not work as expected. warnings.warn( umap/tests/test_umap_ops.py::test_disconnected_data_precomputed[True-1] /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/umap/umap_.py:127: UserWarning: A few of your vertices were disconnected from the manifold. This shouldn't cause problems. Disconnection_distance = 1 has removed 3 edges. It has only fully disconnected 1 vertices. Use umap.utils.disconnected_vertices() to identify them. warn( umap/tests/test_umap_ops.py::test_disconnected_data_precomputed[False-1] /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/umap/umap_.py:127: UserWarning: A few of your vertices were disconnected from the manifold. This shouldn't cause problems. Disconnection_distance = 1 has removed 30 edges. It has only fully disconnected 1 vertices. Use umap.utils.disconnected_vertices() to identify them. warn( umap/tests/test_umap_repeated_data.py::test_repeated_points_large_n umap/tests/test_umap_validation_params.py::test_umap_too_many_neighbors_warns umap/tests/test_umap_validation_params.py::test_umap_inverse_transform_fails_expectedly /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/umap/umap_.py:2462: UserWarning: n_neighbors is larger than the dataset size; truncating to X.shape[0] - 1 warn( umap/tests/test_umap_validation_params.py::test_umap_inverse_transform_fails_expectedly /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/umap/umap_.py:1887: UserWarning: gradient function is not yet implemented for dice distance metric; inverse_transform will be unavailable warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========== 146 passed, 62 skipped, 58 warnings in 133.24s (0:02:13) =========== make[1]: Leaving directory '/build/reproducible-path/umap-learn-0.5.9.post2+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/umap-learn/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing umap_learn.egg-info/PKG-INFO writing dependency_links to umap_learn.egg-info/dependency_links.txt writing requirements to umap_learn.egg-info/requires.txt writing top-level names to umap_learn.egg-info/top_level.txt reading manifest file 'umap_learn.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' writing manifest file 'umap_learn.egg-info/SOURCES.txt' running install_lib creating /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages creating /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages/umap copying /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build/umap/utils.py -> /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages/umap copying /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build/umap/parametric_umap.py -> /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages/umap copying /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build/umap/aligned_umap.py -> /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages/umap copying /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build/umap/spectral.py -> /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages/umap copying /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build/umap/layouts.py -> /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages/umap copying /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build/umap/umap_.py -> /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages/umap copying /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build/umap/__init__.py -> /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages/umap copying /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build/umap/validation.py -> /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages/umap copying /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build/umap/sparse.py -> /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages/umap copying /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build/umap/plot.py -> /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages/umap copying /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/.pybuild/cpython3_3.13/build/umap/distances.py -> /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages/umap byte-compiling /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages/umap/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages/umap/parametric_umap.py to parametric_umap.cpython-313.pyc byte-compiling /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages/umap/aligned_umap.py to aligned_umap.cpython-313.pyc byte-compiling /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages/umap/spectral.py to spectral.cpython-313.pyc byte-compiling /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages/umap/layouts.py to layouts.cpython-313.pyc byte-compiling /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages/umap/umap_.py to umap_.cpython-313.pyc byte-compiling /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages/umap/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages/umap/validation.py to validation.cpython-313.pyc byte-compiling /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages/umap/sparse.py to sparse.cpython-313.pyc byte-compiling /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages/umap/plot.py to plot.cpython-313.pyc byte-compiling /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages/umap/distances.py to distances.cpython-313.pyc running install_egg_info Copying umap_learn.egg-info to /build/reproducible-path/umap-learn-0.5.9.post2+dfsg/debian/umap-learn/usr/lib/python3.13/dist-packages/umap_learn-0.5.9.post2.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/umap-learn-0.5.9.post2+dfsg' dh_installexamples for exa in `grep -l '/usr/bin/env python' debian/*/usr/share/doc/*/examples/*.py`; do sed -i 's#/usr/bin/env python#/usr/bin/python3#' ${exa} ; done make[1]: Leaving directory '/build/reproducible-path/umap-learn-0.5.9.post2+dfsg' dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'umap-learn' in '../umap-learn_0.5.9.post2+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary -O../umap-learn_0.5.9.post2+dfsg-1_amd64.buildinfo dpkg-genchanges --build=binary -O../umap-learn_0.5.9.post2+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3458161 and its subdirectories I: Current time: Wed Oct 28 17:57:31 -12 2026 I: pbuilder-time-stamp: 1793253451 Thu Sep 25 23:34:32 UTC 2025 I: 1st build successful. Starting 2nd build on remote node infom01-amd64.debian.net. Thu Sep 25 23:34:32 UTC 2025 I: Preparing to do remote build '2' on infom01-amd64.debian.net. Thu Sep 25 23:37:57 UTC 2025 I: Deleting $TMPDIR on infom01-amd64.debian.net. Thu Sep 25 23:37:58 UTC 2025 I: umap-learn_0.5.9.post2+dfsg-1_amd64.changes: Format: 1.8 Date: Mon, 01 Sep 2025 16:53:00 +0200 Source: umap-learn Binary: umap-learn Architecture: all Version: 0.5.9.post2+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: umap-learn - Uniform Manifold Approximation and Projection Changes: umap-learn (0.5.9.post2+dfsg-1) unstable; urgency=medium . * Team upload. * d/watch: find new upstream releases * New upstream version * Standards-Version: 4.7.2 (routine-update) * d/control: We need the newer numpy 2.0 compatible version of python3-pynndescent. * Added patch to support older sklearn. Checksums-Sha1: ff6429970a51712e69b119d906f627ca1815d83f 116704 umap-learn_0.5.9.post2+dfsg-1_all.deb 2cde630d9e2f6fcfafd4bf637ea2bd6db2941b38 7143 umap-learn_0.5.9.post2+dfsg-1_amd64.buildinfo Checksums-Sha256: 97c7bdf94653a382ad6ef5377a4c9366161d0034980be7198d21a16fa8e5b545 116704 umap-learn_0.5.9.post2+dfsg-1_all.deb 75afa15716613f8f4159f7109d6318cfa77199617b0ff110c7106a1314748e58 7143 umap-learn_0.5.9.post2+dfsg-1_amd64.buildinfo Files: de025ed70b8c3b49f02d56c96da3786b 116704 science optional umap-learn_0.5.9.post2+dfsg-1_all.deb 5ce10208c64f0db3ee666d68db52f5ae 7143 science optional umap-learn_0.5.9.post2+dfsg-1_amd64.buildinfo Thu Sep 25 23:37:58 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_34-82538.service; invocation ID: e13892a5058e4757b6ab25b39d5b54c3 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.tjvhON9g/umap-learn_0.5.9.post2+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.tjvhON9g/umap-learn_0.5.9.post2+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.tjvhON9g/umap-learn_0.5.9.post2+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.tjvhON9g/b1/umap-learn_0.5.9.post2+dfsg-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.tjvhON9g/b2/umap-learn_0.5.9.post2+dfsg-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 220ms CPU time consumed: 174ms Memory peak: 17.7M (swap: 0B) Thu Sep 25 23:37:59 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Thu Sep 25 23:37:59 UTC 2025 I: umap-learn from unstable built successfully and reproducibly on amd64. Thu Sep 25 23:37:59 UTC 2025 I: Removing signed umap-learn_0.5.9.post2+dfsg-1_amd64.buildinfo.asc files: removed './b1/umap-learn_0.5.9.post2+dfsg-1_amd64.buildinfo.asc' removed './b2/umap-learn_0.5.9.post2+dfsg-1_amd64.buildinfo.asc'