Tue Nov 12 09:21:13 UTC 2024 I: starting to build snakemake/unstable/amd64 on jenkins on '2024-11-12 09:20' Tue Nov 12 09:21:13 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_15/37571/console.log Tue Nov 12 09:21:13 UTC 2024 I: Downloading source for unstable/snakemake=7.32.4-6 --2024-11-12 09:21:13-- http://deb.debian.org/debian/pool/main/s/snakemake/snakemake_7.32.4-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 3526 (3.4K) [text/prs.lines.tag] Saving to: ‘snakemake_7.32.4-6.dsc’ 0K ... 100% 341M=0s 2024-11-12 09:21:14 (341 MB/s) - ‘snakemake_7.32.4-6.dsc’ saved [3526/3526] Tue Nov 12 09:21:14 UTC 2024 I: snakemake_7.32.4-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: snakemake Binary: snakemake, snakemake-doc Architecture: all Version: 7.32.4-6 Maintainer: Debian Med Packaging Team Uploaders: Kevin Murray , Rebecca N. Palmer Homepage: https://snakemake.readthedocs.io/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/snakemake Vcs-Git: https://salsa.debian.org/med-team/snakemake.git Testsuite: autopkgtest Testsuite-Triggers: environment-modules, glpk-utils, graphviz, python3-connection-pool, python3-ftputil, python3-jinja2, python3-pandas, python3-pygments, python3-pytest, python3-pytest-mock, python3-requests-mock, python3-retry, r-base-core, stress Build-Depends: ca-certificates, cwltool, debhelper-compat (= 13), dh-python, pybuild-plugin-pyproject, environment-modules, glpk-utils , imagemagick, python3, python3-platformdirs , python3-biopython , python3-boto3 , python3-botocore , python3-configargparse, python3-connection-pool, python3-datrie, python3-docutils, python3-dropbox , python3-flask , python3-git, python3-jinja2 (>= 3.0~), python3-jsonschema, python3-nbformat, python3-packaging, python3-pandas , python3-psutil, python3-pulp (>= 2.0~), python3-pygments , python3-pytest , python3-pytools , python3-ratelimiter, python3-recommonmark , python3-requests, python3-requests-mock , python3-retry, python3-pytest-mock , python3-rpy2 , python3-setuptools, python3-smart-open (>= 3.0~), python3-sphinx (>= 3.0~) , python3-sphinx-argparse , python3-sphinx-bootstrap-theme , python3-sphinx-rtd-theme , python3-stopit, python3-tabulate, python3-throttler , python3-toposort , python3-wrapt, python3-yaml, python3-yte , r-cran-rmarkdown, stress Package-List: snakemake deb science optional arch=all snakemake-doc deb doc optional arch=all Checksums-Sha1: 375c4819608d0cb06589252e9af3435e9eae98c7 8885863 snakemake_7.32.4.orig.tar.gz 53f3261679c5c870f68a15776017ea4c9f7bb8a6 28456 snakemake_7.32.4-6.debian.tar.xz Checksums-Sha256: e7d7379b91b80484640561878ac2c41d44334a22e51de4ae7b16f43ab6e72ed3 8885863 snakemake_7.32.4.orig.tar.gz 413fb29086db981b3087d2d963791b78fcecbe3a3343fdf0de13446b6837d88e 28456 snakemake_7.32.4-6.debian.tar.xz Files: 2d7cd0faf40a8ca3c6e47f214536d1c9 8885863 snakemake_7.32.4.orig.tar.gz 962a9988c2d5a124cb4d107799b93906 28456 snakemake_7.32.4-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJMBAEBCgA2FiEEZ8sxEAXE7b4yF1MI3uUNDVZ+omYFAmcEVeQYHHJlYmVjY2Ff cGFsbWVyQHpvaG8uY29tAAoJEN7lDQ1WfqJmKPIQAMFw5ZaSTdWJZtr7HA9nRzP+ 9cdVnCaZ5CM6/XZBb2JlNqU3mGk7xqQXY7k0QjyAz3rqcHAVfwcKXVY+OkSVGJiC pbXsl4ytdW2yFixuUDESZaOuMdqLJPa0TMBdFVvwA+RKr0ZreuS61uNC7I6l65iX MEIx66lzOdHPmF0vJgNJg6MkTPJq5asnt6i+rP8a8eFIfgfgfwPLpg7KmDa9jbol vFaDwGXmAlGzWUrMqeGC0fPsIMkI3ODUSLnqXRU7j6mAaJrWlft9Rj2c2Dou6ajy Kyw8YD5IFClKy/gYl2TfwVKYKpSvpn4K1cQP9IQRd/a5IIgu/9vcb3ZMk4WyfchD KJztJawGNp0oTTojazz+le+ATxviDNjYKBNgQ8JTNu5RdgWSgaHGTd2ezcQ0E/Ub WllRiUt143l2IOXDlk0hSN+CIdcKk0XnKa5CoJaszES1D4cPeRSqyqNZr6PuHtWg xRcbhfMIOdD5JPCw40+NSvwlj3jF8JCECMkM337EKS6Dz7au9ugJlQoRRhryDhtP PUHwYYKHSrd/wR6ED5aWGzXBX77BlQ7Hxiz9i+RtC1UhzWZgEtAkAq31evdi6xfL PPMWuoPnqvQHbFe/CRrO8DdOSBIKadahdshVibsRHT04SGj9POiCYgS1Yjte2IwQ mZucvkp6SlhsIU5FBVJO =Nl9M -----END PGP SIGNATURE----- Tue Nov 12 09:21:14 UTC 2024 I: Checking whether the package is not for us Tue Nov 12 09:21:14 UTC 2024 I: Starting 1st build on remote node ionos11-amd64.debian.net. Tue Nov 12 09:21:14 UTC 2024 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Tue Nov 12 10:10:47 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Nov 11 21:21:16 -12 2024 I: pbuilder-time-stamp: 1731403276 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [snakemake_7.32.4-6.dsc] I: copying [./snakemake_7.32.4.orig.tar.gz] I: copying [./snakemake_7.32.4-6.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Oct 7 21:43:00 2024 gpgv: using RSA key 67CB311005C4EDBE32175308DEE50D0D567EA266 gpgv: issuer "rebecca_palmer@zoho.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./snakemake_7.32.4-6.dsc: no acceptable signature found dpkg-source: info: extracting snakemake in snakemake-7.32.4 dpkg-source: info: unpacking snakemake_7.32.4.orig.tar.gz dpkg-source: info: unpacking snakemake_7.32.4-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying local_javascript.patch dpkg-source: info: applying 0003-Compat-fix.patch dpkg-source: info: applying 0006-restore-bin.patch dpkg-source: info: applying 0008-remove_sphinx.ext.patch dpkg-source: info: applying 0009-skip-test-without-google-cloud-sdk.patch dpkg-source: info: applying python3.patch dpkg-source: info: applying workaround_sphinx_issue.patch dpkg-source: info: applying remove_ccbysa_snippets.patch dpkg-source: info: applying fix_test_pytest.patch dpkg-source: info: applying python2to3.patch dpkg-source: info: applying reproducible-build.patch dpkg-source: info: applying test_from_any_directory.patch dpkg-source: info: applying cirumvent-retry.patch dpkg-source: info: applying skip-tests-with-internet.patch dpkg-source: info: applying skip-tests-with-slurm.patch dpkg-source: info: applying skip-test-lint_long_run.patch dpkg-source: info: applying skip-test_workflow_calling.patch dpkg-source: info: applying no_mix_tabs_spaces.patch dpkg-source: info: applying fstring.patch dpkg-source: info: applying 1068010_appdirs_to_platformdirs.patch dpkg-source: info: applying test_solver.patch dpkg-source: info: applying test_extra_time.patch dpkg-source: info: applying no_pkg_resources.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4161091/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='7cce605ebfd24954a0a9f8bac6e6d141' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4161091' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.11BrtHsZ/pbuilderrc_wWq3 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.11BrtHsZ/b1 --logfile b1/build.log snakemake_7.32.4-6.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4161091/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: ca-certificates, cwltool, debhelper-compat (= 13), dh-python, pybuild-plugin-pyproject, environment-modules, glpk-utils, imagemagick, python3, python3-platformdirs, python3-biopython, python3-boto3, python3-botocore, python3-configargparse, python3-connection-pool, python3-datrie, python3-docutils, python3-dropbox, python3-flask, python3-git, python3-jinja2 (>= 3.0~), python3-jsonschema, python3-nbformat, python3-packaging, python3-pandas, python3-psutil, python3-pulp (>= 2.0~), python3-pygments, python3-pytest, python3-pytools, python3-ratelimiter, python3-recommonmark, python3-requests, python3-requests-mock, python3-retry, python3-pytest-mock, python3-rpy2, python3-setuptools, python3-smart-open (>= 3.0~), python3-sphinx (>= 3.0~), python3-sphinx-argparse, python3-sphinx-bootstrap-theme, python3-sphinx-rtd-theme, python3-stopit, python3-tabulate, python3-throttler, python3-toposort, python3-wrapt, python3-yaml, python3-yte, r-cran-rmarkdown, stress dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on ca-certificates; however: Package ca-certificates is not installed. pbuilder-satisfydepends-dummy depends on cwltool; however: Package cwltool is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on environment-modules; however: Package environment-modules is not installed. pbuilder-satisfydepends-dummy depends on glpk-utils; however: Package glpk-utils is not installed. pbuilder-satisfydepends-dummy depends on imagemagick; however: Package imagemagick is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-platformdirs; however: Package python3-platformdirs is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-boto3; however: Package python3-boto3 is not installed. pbuilder-satisfydepends-dummy depends on python3-botocore; however: Package python3-botocore is not installed. pbuilder-satisfydepends-dummy depends on python3-configargparse; however: Package python3-configargparse is not installed. pbuilder-satisfydepends-dummy depends on python3-connection-pool; however: Package python3-connection-pool is not installed. pbuilder-satisfydepends-dummy depends on python3-datrie; however: Package python3-datrie is not installed. pbuilder-satisfydepends-dummy depends on python3-docutils; however: Package python3-docutils is not installed. pbuilder-satisfydepends-dummy depends on python3-dropbox; however: Package python3-dropbox is not installed. pbuilder-satisfydepends-dummy depends on python3-flask; however: Package python3-flask is not installed. pbuilder-satisfydepends-dummy depends on python3-git; however: Package python3-git is not installed. pbuilder-satisfydepends-dummy depends on python3-jinja2 (>= 3.0~); however: Package python3-jinja2 is not installed. pbuilder-satisfydepends-dummy depends on python3-jsonschema; however: Package python3-jsonschema is not installed. pbuilder-satisfydepends-dummy depends on python3-nbformat; however: Package python3-nbformat is not installed. pbuilder-satisfydepends-dummy depends on python3-packaging; however: Package python3-packaging is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-psutil; however: Package python3-psutil is not installed. pbuilder-satisfydepends-dummy depends on python3-pulp (>= 2.0~); however: Package python3-pulp is not installed. pbuilder-satisfydepends-dummy depends on python3-pygments; however: Package python3-pygments is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytools; however: Package python3-pytools is not installed. pbuilder-satisfydepends-dummy depends on python3-ratelimiter; however: Package python3-ratelimiter is not installed. pbuilder-satisfydepends-dummy depends on python3-recommonmark; however: Package python3-recommonmark is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-requests-mock; however: Package python3-requests-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-retry; however: Package python3-retry is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however: Package python3-pytest-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-rpy2; however: Package python3-rpy2 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-smart-open (>= 3.0~); however: Package python3-smart-open is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx (>= 3.0~); however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-argparse; however: Package python3-sphinx-argparse is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-bootstrap-theme; however: Package python3-sphinx-bootstrap-theme is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. pbuilder-satisfydepends-dummy depends on python3-stopit; however: Package python3-stopit is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate; however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-throttler; however: Package python3-throttler is not installed. pbuilder-satisfydepends-dummy depends on python3-toposort; however: Package python3-toposort is not installed. pbuilder-satisfydepends-dummy depends on python3-wrapt; however: Package python3-wrapt is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-yte; however: Package python3-yte is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rmarkdown; however: Package r-cran-rmarkdown is not installed. pbuilder-satisfydepends-dummy depends on stress; however: Package stress is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} coinor-cbc{a} coinor-libcbc3.1{a} coinor-libcgl1{a} coinor-libclp1{a} coinor-libcoinutils3v5{a} coinor-libosi1v5{a} cwl-upgrader{a} cwltool{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} environment-modules{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-lato{a} fonts-mathjax{a} fonts-urw-base35{a} gettext{a} gettext-base{a} git{a} git-man{a} glpk-utils{a} graphviz{a} groff-base{a} hicolor-icon-theme{a} imagemagick{a} imagemagick-7-common{a} imagemagick-7.q16{a} intltool-debian{a} javascript-common{a} less{a} libabsl20230802{a} libamd3{a} libann0{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libblas3{a} libbrotli1{a} libcairo2{a} libcdt5{a} libcgraph6{a} libcolamd3{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdatrie1{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} liberror-perl{a} libexpat1{a} libfftw3-double3{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libgfortran5{a} libglib2.0-0t64{a} libglpk40{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgts-0.7-5t64{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libice6{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-bootstrap{a} libjs-bootstrap4{a} libjs-d3{a} libjs-es5-shim{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-selectize.js{a} libjs-jquery-ui{a} libjs-json{a} libjs-mathjax{a} libjs-microplugin.js{a} libjs-modernizr{a} libjs-popper.js{a} libjs-prettify{a} libjs-sifter.js{a} libjs-sphinxdoc{a} libjs-twitter-bootstrap-datepicker{a} libjs-underscore{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblab-gamut1{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblqr-1-0{a} libltdl7{a} liblua5.4-0{a} libmagic-mgc{a} libmagic1t64{a} libmagickcore-7.q16-10{a} libmagickwand-7.q16-10{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libnuma1{a} libopenjp2-7{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpathplan4{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} librav1e0.7{a} libraw23t64{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsuitesparseconfig7{a} libsvtav1enc2{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libuv1t64{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxslt1.1{a} libxss1{a} libxt6t64{a} libyaml-0-2{a} libyuv0{a} littler{a} m4{a} man-db{a} media-types{a} netbase{a} node-bootstrap-sass{a} node-html5shiv{a} node-normalize.css{a} openssl{a} pandoc{a} pandoc-data{a} po-debconf{a} procps{a} pybuild-plugin-pyproject{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-arcp{a} python3-argcomplete{a} python3-attr{a} python3-autocommand{a} python3-babel{a} python3-biopython{a} python3-blinker{a} python3-boto3{a} python3-botocore{a} python3-build{a} python3-cachecontrol{a} python3-cairo{a} python3-certifi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-coloredlogs{a} python3-commonmark{a} python3-configargparse{a} python3-connection-pool{a} python3-cwl-utils{a} python3-dateutil{a} python3-datrie{a} python3-decorator{a} python3-defusedxml{a} python3-docutils{a} python3-dpath{a} python3-dropbox{a} python3-fastjsonschema{a} python3-filelock{a} python3-flask{a} python3-freetype{a} python3-git{a} python3-gitdb{a} python3-humanfriendly{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-jmespath{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-jupyter-core{a} python3-lxml{a} python3-markupsafe{a} python3-minimal{a} python3-mistune{a} python3-more-itertools{a} python3-msgpack{a} python3-mypy-extensions{a} python3-nbformat{a} python3-networkx{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pkg-resources{a} python3-plac{a} python3-platformdirs{a} python3-pluggy{a} python3-ply{a} python3-prov{a} python3-psutil{a} python3-pulp{a} python3-py{a} python3-pydot{a} python3-pygments{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytest-mock{a} python3-pytools{a} python3-ratelimiter{a} python3-rdflib{a} python3-recommonmark{a} python3-referencing{a} python3-reportlab{a} python3-requests{a} python3-requests-mock{a} python3-retry{a} python3-rlpycairo{a} python3-roman{a} python3-rpds-py{a} python3-rpy2{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-s3transfer{a} python3-schema-salad{a} python3-setuptools{a} python3-six{a} python3-smart-open{a} python3-smmap{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sphinx-argparse{a} python3-sphinx-bootstrap-theme{a} python3-sphinx-rtd-theme{a} python3-sphinxcontrib.jquery{a} python3-spython{a} python3-stone{a} python3-stopit{a} python3-tabulate{a} python3-throttler{a} python3-toml{a} python3-toposort{a} python3-traitlets{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-tzlocal{a} python3-urllib3{a} python3-werkzeug{a} python3-wheel{a} python3-wrapt{a} python3-yaml{a} python3-yte{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} r-base-core{a} r-cran-base64enc{a} r-cran-bslib{a} r-cran-cachem{a} r-cran-cli{a} r-cran-commonmark{a} r-cran-crayon{a} r-cran-digest{a} r-cran-evaluate{a} r-cran-fastmap{a} r-cran-fontawesome{a} r-cran-fs{a} r-cran-glue{a} r-cran-highr{a} r-cran-htmltools{a} r-cran-httpuv{a} r-cran-jquerylib{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-later{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-memoise{a} r-cran-mime{a} r-cran-pkgkitten{a} r-cran-promises{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcpp{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-sass{a} r-cran-shiny{a} r-cran-sourcetools{a} r-cran-tinytex{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} sphinx-rtd-theme-common{a} stress{a} tcl8.6{a} tzdata{a} ucf{a} unzip{a} w3c-sgml-lib{a} x11-common{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} zip{a} The following packages are RECOMMENDED but will NOT be installed: black curl fonts-dejavu-extra fonts-liberation ghostscript krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libjson-xs-perl libldap-common libltdl-dev libmagickcore-7.q16-10-extra libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx ncbi-blast+ netpbm node-highlight.js node-jquery nodejs openssh-client psmisc publicsuffix python-biopython-doc python3-asgiref python3-bottleneck python3-bs4 python3-cssselect python3-dotenv python3-gdal python3-html5lib python3-html5rdf python3-json-pointer python3-matplotlib python3-numba python3-numexpr python3-odf python3-olefile python3-openpyxl python3-openssl python3-orjson python3-paramiko python3-pygraphviz python3-pyinotify python3-rfc3987 python3-scipy python3-simplejson python3-tables python3-uritemplate python3-webcolors python3-zstandard r-base-dev r-cran-cairo r-cran-callr r-cran-codetools r-cran-covr r-cran-curl r-cran-dbi r-cran-downlit r-cran-dplyr r-cran-dt r-cran-dygraphs r-cran-formatr r-cran-future r-cran-ggplot2 r-cran-gridsvg r-cran-htmlwidgets r-cran-httr r-cran-jpeg r-cran-lattice r-cran-lintr r-cran-magick r-cran-markdown r-cran-mockery r-cran-pillar r-cran-png r-cran-processx r-cran-ps r-cran-purrr r-cran-r.rsp r-cran-ragg r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rprojroot r-cran-rsconnect r-cran-rsqlite r-cran-rstudioapi r-cran-rsvg r-cran-runit r-cran-sf r-cran-spelling r-cran-svglite r-cran-testit r-cran-testthat r-cran-thematic r-cran-tibble r-cran-tidyverse r-cran-tikzdevice r-cran-usethis r-cran-vctrs r-cran-waldo r-cran-webshot r-cran-whoami r-cran-xml2 r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 396 newly installed, 0 to remove and 0 not upgraded. Need to get 239 MB of archives. After unpacking 1051 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 fonts-lato all 2.015-1 [2780 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libfftw3-double3 amd64 3.3.10-2 [781 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b5 [307 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1+b1 [23.3 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 14 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.5.0-1+b1 [550 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-dav1d amd64 1.19.3-1 [11.2 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libde265-0 amd64 1.0.15-1+b2 [189 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-libde265 amd64 1.19.3-1 [15.0 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libheif1 amd64 1.19.3-1 [489 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.82.2-2 [1501 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 liblqr-1-0 amd64 0.4.2-2.1+b2 [29.5 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libltdl7 amd64 2.4.7-8 [393 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.0-2+b4 [199 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libraw23t64 amd64 0.21.3-1+b1 [390 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.4.0-0.1+b1 [111 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.4.0-0.1+b1 [123 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3+b2 [24.4 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2 [699 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 imagemagick-7-common all 8:7.1.1.39+dfsg1-2 [66.7 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libmagickcore-7.q16-10 amd64 8:7.1.1.39+dfsg1-2 [1844 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libmagickwand-7.q16-10 amd64 8:7.1.1.39+dfsg1-2 [339 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-3 [255 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 57 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 67 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31 [15.4 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 less amd64 643-1 [148 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-10 [97.2 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-3+b1 [152 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-3+b1 [2450 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 coinor-libcoinutils3v5 amd64 2.11.11+ds-1+b1 [459 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 coinor-libosi1v5 amd64 0.108.10+ds-1+b1 [293 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 coinor-libclp1 amd64 1.17.10+ds-1 [883 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 coinor-libcgl1 amd64 0.60.9+ds-1 [426 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 coinor-libcbc3.1 amd64 2.10.12+ds-1 [714 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 coinor-cbc amd64 2.10.12+ds-1 [16.2 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-ruamel.yaml.clib amd64 0.2.8+ds-2 [130 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-ruamel.yaml all 0.18.6+ds-3 [145 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 110 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.0-1 [118 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.8-2 [41.6 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.0.7-2 [111 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 python3-msgpack amd64 1.0.3-3+b2 [80.4 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 python3-cachecontrol all 0.14.1-1 [18.6 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 python3-mistune all 3.0.2-2 [33.2 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 python3-mypy-extensions all 1.0.0-1 [6064 B] Get: 119 http://deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 python3-rdflib all 7.1.1-2 [472 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 python3-filelock all 3.16.1-1 [12.6 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 python3-schema-salad amd64 8.7.20240905150001-1 [1001 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 cwl-upgrader all 1.2.11-1 [15.7 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 python3-argcomplete all 3.5.1-1 [40.1 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 python3-humanfriendly all 10.0-6 [85.6 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 python3-coloredlogs all 15.0.1-1 [47.4 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.1-1 [45.8 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 python3-cwl-utils all 0.35-1 [118 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.35-1.1+b1 [233 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 python3-lxml amd64 5.3.0-1 [1251 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 python3-networkx all 3.2.1-4 [14.2 MB] Get: 135 http://deb.debian.org/debian unstable/main amd64 python3-prov all 2.0.1-1 [95.1 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 python3-psutil amd64 5.9.8-2 [225 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libcdt5 amd64 2.42.4-2+b1 [40.5 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libcgraph6 amd64 2.42.4-2+b1 [64.2 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libaom3 amd64 3.11.0~rc1-1 [1879 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libabsl20230802 amd64 20230802.1-4 [464 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libgav1-1 amd64 0.19.0-2+b2 [350 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 librav1e0.7 amd64 0.7.1-7+b2 [936 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libsvtav1enc2 amd64 2.2.1+dfsg-2 [2173 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libyuv0 amd64 0.0.1888.20241107-1 [172 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libavif16 amd64 1.1.1-1 [117 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 10.0.1-1 [477 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.1-1+b2 [14.1 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b2 [56.3 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libgd3 amd64 2.3.3-12+b1 [126 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2+b1 [160 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-1.1+b1 [463 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.54.0+ds-3 [223 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-3 [54.2 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-3 [35.2 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libpathplan4 amd64 2.42.4-2+b1 [42.8 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 libgvc6 amd64 2.42.4-2+b1 [685 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 libgvpr2 amd64 2.42.4-2+b1 [193 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 liblab-gamut1 amd64 2.42.4-2+b1 [198 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b1 [188 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-3+b3 [58.8 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.16-1 [212 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 graphviz amd64 2.42.4-2+b1 [616 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 python3-pydot all 2.0.0-3 [32.6 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 python3-spython all 0.3.13-2 [55.2 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 python3-arcp all 0.2.1-6 [13.5 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.2.0-1 [731 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 cwltool all 3.1.20241024121129-1 [511 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 190 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 194 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20241024 [109 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 199 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1042 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 tcl8.6 amd64 8.6.15+dfsg-2 [120 kB] Get: 201 http://deb.debian.org/debian unstable/main amd64 environment-modules amd64 5.4.0-1 [731 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.4.0-1+b1 [63.6 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.6.0-1 [122 kB] Get: 210 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.6.0-1 [19.6 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.11.0-1 [359 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 liberror-perl all 0.17029-2 [29.0 kB] Get: 216 http://deb.debian.org/debian unstable/main amd64 git-man all 1:2.45.2-1.2 [2159 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 git amd64 1:2.45.2-1.2 [8662 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-2 [23.8 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 libamd3 amd64 1:7.8.3+dfsg-2 [40.7 kB] Get: 220 http://deb.debian.org/debian unstable/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-2 [32.5 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 libglpk40 amd64 5.0-1+b2 [401 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 glpk-utils amd64 5.0-1+b2 [250 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 hicolor-icon-theme all 0.18-1 [12.0 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 imagemagick-7.q16 amd64 8:7.1.1.39+dfsg1-2 [726 kB] Get: 225 http://deb.debian.org/debian unstable/main amd64 imagemagick amd64 8:7.1.1.39+dfsg1-2 [19.8 kB] Get: 226 http://deb.debian.org/debian unstable/main amd64 javascript-common all 11+nmu1 [6260 B] Get: 227 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.11.0-1 [351 kB] Get: 228 http://deb.debian.org/debian unstable/main amd64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get: 229 http://deb.debian.org/debian unstable/main amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Get: 230 http://deb.debian.org/debian unstable/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get: 231 http://deb.debian.org/debian unstable/main amd64 libjs-es5-shim all 4.6.7-2 [47.4 kB] Get: 232 http://deb.debian.org/debian unstable/main amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB] Get: 233 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 234 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get: 235 http://deb.debian.org/debian unstable/main amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB] Get: 236 http://deb.debian.org/debian unstable/main amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B] Get: 237 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Get: 238 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 239 http://deb.debian.org/debian unstable/main amd64 libjs-json all 0~20221030+~1.0.8-1 [20.0 kB] Get: 240 http://deb.debian.org/debian unstable/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 241 http://deb.debian.org/debian unstable/main amd64 libjs-modernizr all 3.13.0-0.1 [191 kB] Get: 242 http://deb.debian.org/debian unstable/main amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Get: 243 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 244 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 245 http://deb.debian.org/debian unstable/main amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Get: 246 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 247 http://deb.debian.org/debian unstable/main amd64 liblua5.4-0 amd64 5.4.6-3+b2 [147 kB] Get: 248 http://deb.debian.org/debian unstable/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB] Get: 249 http://deb.debian.org/debian unstable/main amd64 libpaper1 amd64 1.1.29+b2 [12.8 kB] Get: 250 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 1.1.29+b2 [9236 B] Get: 251 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b2 [54.5 kB] Get: 252 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b2 [17.0 kB] Get: 253 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.15-1 [791 kB] Get: 254 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB] Get: 255 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-1+b2 [52.7 kB] Get: 256 http://deb.debian.org/debian unstable/main amd64 zip amd64 3.0-14 [233 kB] Get: 257 http://deb.debian.org/debian unstable/main amd64 unzip amd64 6.0-28 [166 kB] Get: 258 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 259 http://deb.debian.org/debian unstable/main amd64 r-base-core amd64 4.4.2-1 [28.3 MB] Get: 260 http://deb.debian.org/debian unstable/main amd64 r-cran-littler amd64 0.3.20-1 [102 kB] Get: 261 http://deb.debian.org/debian unstable/main amd64 littler all 0.3.20-1 [16.0 kB] Get: 262 http://deb.debian.org/debian unstable/main amd64 node-bootstrap-sass all 3.4.3-2 [186 kB] Get: 263 http://deb.debian.org/debian unstable/main amd64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get: 264 http://deb.debian.org/debian unstable/main amd64 node-normalize.css all 8.0.1-5 [12.7 kB] Get: 265 http://deb.debian.org/debian unstable/main amd64 pandoc-data all 3.1.11.1-3 [459 kB] Get: 266 http://deb.debian.org/debian unstable/main amd64 pandoc amd64 3.1.11.1+ds-2 [26.4 MB] Get: 267 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 268 http://deb.debian.org/debian unstable/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get: 269 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.44.0-2 [53.4 kB] Get: 270 http://deb.debian.org/debian unstable/main amd64 python3-build all 1.2.2-1 [36.0 kB] Get: 271 http://deb.debian.org/debian unstable/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 272 http://deb.debian.org/debian unstable/main amd64 pybuild-plugin-pyproject all 6.20241024 [11.4 kB] Get: 273 http://deb.debian.org/debian unstable/main amd64 python-babel-localedata all 2.14.0-1 [5701 kB] Get: 274 http://deb.debian.org/debian unstable/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 275 http://deb.debian.org/debian unstable/main amd64 python3-attr all 24.2.0-1 [68.4 kB] Get: 276 http://deb.debian.org/debian unstable/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get: 277 http://deb.debian.org/debian unstable/main amd64 python3-babel all 2.14.0-1 [111 kB] Get: 278 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:1.26.4+ds-11 [4236 kB] Get: 279 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 10.4.0-1 [502 kB] Get: 280 http://deb.debian.org/debian unstable/main amd64 python3-cairo amd64 1.26.1-2 [114 kB] Get: 281 http://deb.debian.org/debian unstable/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 282 http://deb.debian.org/debian unstable/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 283 http://deb.debian.org/debian unstable/main amd64 python3-reportlab all 4.2.5-1 [1117 kB] Get: 284 http://deb.debian.org/debian unstable/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 285 http://deb.debian.org/debian unstable/main amd64 python3-biopython amd64 1.84+dfsg-4 [1646 kB] Get: 286 http://deb.debian.org/debian unstable/main amd64 python3-blinker all 1.8.2-1 [13.1 kB] Get: 287 http://deb.debian.org/debian unstable/main amd64 python3-jmespath all 1.0.1-1 [21.1 kB] Get: 288 http://deb.debian.org/debian unstable/main amd64 python3-six all 1.16.0-7 [16.4 kB] Get: 289 http://deb.debian.org/debian unstable/main amd64 python3-botocore all 1.34.46+repack-1 [6464 kB] Get: 290 http://deb.debian.org/debian unstable/main amd64 python3-s3transfer all 0.10.1-1 [55.6 kB] Get: 291 http://deb.debian.org/debian unstable/main amd64 python3-boto3 all 1.34.46+dfsg-1 [269 kB] Get: 292 http://deb.debian.org/debian unstable/main amd64 python3-cffi-backend amd64 1.17.1-2 [87.5 kB] Get: 293 http://deb.debian.org/debian unstable/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get: 294 http://deb.debian.org/debian unstable/main amd64 python3-click all 8.1.7-2 [94.3 kB] Get: 295 http://deb.debian.org/debian unstable/main amd64 python3-commonmark all 0.9.1-6 [45.3 kB] Get: 296 http://deb.debian.org/debian unstable/main amd64 python3-configargparse all 1.7-1 [31.3 kB] Get: 297 http://deb.debian.org/debian unstable/main amd64 python3-connection-pool all 0.0.3-2 [5584 B] Get: 298 http://deb.debian.org/debian unstable/main amd64 python3-datrie amd64 0.8.2-5 [124 kB] Get: 299 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 300 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-2 [43.3 kB] Get: 301 http://deb.debian.org/debian unstable/main amd64 python3-roman all 4.2-1 [10.4 kB] Get: 302 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 303 http://deb.debian.org/debian unstable/main amd64 python3-dpath all 2.2.0-1 [19.9 kB] Get: 304 http://deb.debian.org/debian unstable/main amd64 python3-ply all 3.11-7 [62.6 kB] Get: 305 http://deb.debian.org/debian unstable/main amd64 python3-stone all 3.3.7-1 [115 kB] Get: 306 http://deb.debian.org/debian unstable/main amd64 python3-dropbox all 12.0.2-1 [399 kB] Get: 307 http://deb.debian.org/debian unstable/main amd64 python3-fastjsonschema all 2.20.0-1 [21.8 kB] Get: 308 http://deb.debian.org/debian unstable/main amd64 python3-itsdangerous all 2.2.0-1 [18.0 kB] Get: 309 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 2.1.5-1+b1 [13.6 kB] Get: 310 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 311 http://deb.debian.org/debian unstable/main amd64 python3-werkzeug all 3.0.4-1 [207 kB] Get: 312 http://deb.debian.org/debian unstable/main amd64 python3-flask all 3.0.3-1 [104 kB] Get: 313 http://deb.debian.org/debian unstable/main amd64 python3-smmap all 6.0.0-1 [20.1 kB] Get: 314 http://deb.debian.org/debian unstable/main amd64 python3-gitdb all 4.0.11-1 [45.5 kB] Get: 315 http://deb.debian.org/debian unstable/main amd64 python3-git all 3.1.37-3 [137 kB] Get: 316 http://deb.debian.org/debian unstable/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 317 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 318 http://deb.debian.org/debian unstable/main amd64 python3-rpds-py amd64 0.21.0-1 [251 kB] Get: 319 http://deb.debian.org/debian unstable/main amd64 python3-referencing all 0.35.1-1 [23.5 kB] Get: 320 http://deb.debian.org/debian unstable/main amd64 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get: 321 http://deb.debian.org/debian unstable/main amd64 python3-jsonschema all 4.19.2-5 [71.4 kB] Get: 322 http://deb.debian.org/debian unstable/main amd64 python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 323 http://deb.debian.org/debian unstable/main amd64 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Get: 324 http://deb.debian.org/debian unstable/main amd64 python3-jupyter-core all 5.7.2-4 [35.1 kB] Get: 325 http://deb.debian.org/debian unstable/main amd64 python3-nbformat all 5.9.1-1 [45.1 kB] Get: 326 http://deb.debian.org/debian unstable/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-5 [4389 kB] Get: 327 http://deb.debian.org/debian unstable/main amd64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get: 328 http://deb.debian.org/debian unstable/main amd64 python3-plac all 1.4.3-1 [65.6 kB] Get: 329 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 330 http://deb.debian.org/debian unstable/main amd64 python3-pulp all 2.7.0+dfsg-4 [72.4 kB] Get: 331 http://deb.debian.org/debian unstable/main amd64 python3-py all 1.11.0-2 [88.7 kB] Get: 332 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get: 333 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.3-1 [249 kB] Get: 334 http://deb.debian.org/debian unstable/main amd64 python3-pytest-mock all 3.14.0-2 [18.3 kB] Get: 335 http://deb.debian.org/debian unstable/main amd64 python3-pytools all 2024.1.14-1 [67.3 kB] Get: 336 http://deb.debian.org/debian unstable/main amd64 python3-ratelimiter amd64 1.2.0.post0-4 [5740 B] Get: 337 http://deb.debian.org/debian unstable/main amd64 sphinx-common all 7.4.7-4 [731 kB] Get: 338 http://deb.debian.org/debian unstable/main amd64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 339 http://deb.debian.org/debian unstable/main amd64 python3-sphinx all 7.4.7-4 [588 kB] Get: 340 http://deb.debian.org/debian unstable/main amd64 python3-recommonmark all 0.7.1+ds-5 [17.3 kB] Get: 341 http://deb.debian.org/debian unstable/main amd64 python3-requests-mock all 1.12.1-2 [17.5 kB] Get: 342 http://deb.debian.org/debian unstable/main amd64 python3-retry all 0.9.2-3 [7088 B] Get: 343 http://deb.debian.org/debian unstable/main amd64 python3-tzlocal all 5.2-1.1 [23.7 kB] Get: 344 http://deb.debian.org/debian unstable/main amd64 python3-rpy2 amd64 3.5.16-3 [207 kB] Get: 345 http://deb.debian.org/debian unstable/main amd64 python3-wrapt amd64 1.15.0-3 [43.3 kB] Get: 346 http://deb.debian.org/debian unstable/main amd64 python3-smart-open all 7.0.5-1 [98.5 kB] Get: 347 http://deb.debian.org/debian unstable/main amd64 python3-sphinx-argparse all 0.5.2-1 [59.6 kB] Get: 348 http://deb.debian.org/debian unstable/main amd64 python3-sphinx-bootstrap-theme all 0.8.1-5 [422 kB] Get: 349 http://deb.debian.org/debian unstable/main amd64 sphinx-rtd-theme-common all 3.0.1+dfsg-1 [1022 kB] Get: 350 http://deb.debian.org/debian unstable/main amd64 python3-sphinxcontrib.jquery all 4.1-5 [7348 B] Get: 351 http://deb.debian.org/debian unstable/main amd64 python3-sphinx-rtd-theme all 3.0.1+dfsg-1 [29.5 kB] Get: 352 http://deb.debian.org/debian unstable/main amd64 python3-stopit all 1.1.2-3 [12.8 kB] Get: 353 http://deb.debian.org/debian unstable/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 354 http://deb.debian.org/debian unstable/main amd64 python3-throttler all 1.2.2-2 [7072 B] Get: 355 http://deb.debian.org/debian unstable/main amd64 python3-toposort all 1.10-2 [7336 B] Get: 356 http://deb.debian.org/debian unstable/main amd64 python3-yaml amd64 6.0.2-1 [134 kB] Get: 357 http://deb.debian.org/debian unstable/main amd64 python3-yte all 1.5.4-1 [13.6 kB] Get: 358 http://deb.debian.org/debian unstable/main amd64 r-cran-base64enc amd64 0.1-3-3 [27.9 kB] Get: 359 http://deb.debian.org/debian unstable/main amd64 r-cran-rlang amd64 1.1.4-1 [1712 kB] Get: 360 http://deb.debian.org/debian unstable/main amd64 r-cran-fastmap amd64 1.2.0-1 [72.2 kB] Get: 361 http://deb.debian.org/debian unstable/main amd64 r-cran-cachem amd64 1.1.0-1 [73.9 kB] Get: 362 http://deb.debian.org/debian unstable/main amd64 r-cran-digest amd64 0.6.37-1 [206 kB] Get: 363 http://deb.debian.org/debian unstable/main amd64 r-cran-htmltools amd64 0.5.8.1-1 [378 kB] Get: 364 http://deb.debian.org/debian unstable/main amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.1 kB] Get: 365 http://deb.debian.org/debian unstable/main amd64 r-cran-jsonlite amd64 1.8.9+dfsg-1 [445 kB] Get: 366 http://deb.debian.org/debian unstable/main amd64 r-cran-cli amd64 3.6.3-1 [1342 kB] Get: 367 http://deb.debian.org/debian unstable/main amd64 r-cran-glue amd64 1.7.0-1 [157 kB] Get: 368 http://deb.debian.org/debian unstable/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get: 369 http://deb.debian.org/debian unstable/main amd64 r-cran-memoise all 2.0.1-1 [53.8 kB] Get: 370 http://deb.debian.org/debian unstable/main amd64 r-cran-mime amd64 0.12-2 [35.6 kB] Get: 371 http://deb.debian.org/debian unstable/main amd64 r-cran-fs amd64 1.6.4+dfsg-1 [247 kB] Get: 372 http://deb.debian.org/debian unstable/main amd64 r-cran-r6 all 2.5.1-1 [105 kB] Get: 373 http://deb.debian.org/debian unstable/main amd64 r-cran-rappdirs amd64 0.3.3-1 [47.4 kB] Get: 374 http://deb.debian.org/debian unstable/main amd64 r-cran-sass amd64 0.4.9+dfsg-1 [965 kB] Get: 375 http://deb.debian.org/debian unstable/main amd64 r-cran-bslib all 0.7.0+dfsg-1 [4365 kB] Get: 376 http://deb.debian.org/debian unstable/main amd64 r-cran-commonmark amd64 1.9.2-1 [122 kB] Get: 377 http://deb.debian.org/debian unstable/main amd64 r-cran-crayon all 1.5.2-1 [165 kB] Get: 378 http://deb.debian.org/debian unstable/main amd64 r-cran-evaluate all 1.0.0-1 [112 kB] Get: 379 http://deb.debian.org/debian unstable/main amd64 r-cran-fontawesome all 0.5.2-1 [1286 kB] Get: 380 http://deb.debian.org/debian unstable/main amd64 r-cran-xfun amd64 0.49+dfsg-1 [546 kB] Get: 381 http://deb.debian.org/debian unstable/main amd64 r-cran-highr all 0.11+dfsg-1 [38.3 kB] Get: 382 http://deb.debian.org/debian unstable/main amd64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get: 383 http://deb.debian.org/debian unstable/main amd64 r-cran-rcpp amd64 1.0.13-1-1 [2074 kB] Get: 384 http://deb.debian.org/debian unstable/main amd64 r-cran-later amd64 1.3.2+dfsg-1 [118 kB] Get: 385 http://deb.debian.org/debian unstable/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB] Get: 386 http://deb.debian.org/debian unstable/main amd64 r-cran-promises amd64 1.3.0+dfsg-1 [284 kB] Get: 387 http://deb.debian.org/debian unstable/main amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [493 kB] Get: 388 http://deb.debian.org/debian unstable/main amd64 r-cran-yaml amd64 2.3.10-1 [108 kB] Get: 389 http://deb.debian.org/debian unstable/main amd64 r-cran-knitr all 1.48+dfsg-1 [912 kB] Get: 390 http://deb.debian.org/debian unstable/main amd64 r-cran-tinytex all 0.53-1 [146 kB] Get: 391 http://deb.debian.org/debian unstable/main amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get: 392 http://deb.debian.org/debian unstable/main amd64 r-cran-sourcetools amd64 0.1.7-1-1 [45.9 kB] Get: 393 http://deb.debian.org/debian unstable/main amd64 r-cran-withr all 3.0.2+dfsg-1 [226 kB] Get: 394 http://deb.debian.org/debian unstable/main amd64 r-cran-shiny all 1.9.1+dfsg-1 [3126 kB] Get: 395 http://deb.debian.org/debian unstable/main amd64 r-cran-rmarkdown all 2.28+dfsg-1 [1474 kB] Get: 396 http://deb.debian.org/debian unstable/main amd64 stress amd64 1.0.7-1 [21.9 kB] Fetched 239 MB in 9s (26.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../00-fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libfftw3-double3:amd64. Preparing to unpack .../01-libfftw3-double3_3.3.10-2_amd64.deb ... Unpacking libfftw3-double3:amd64 (3.3.10-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../02-libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../03-libbrotli1_1.1.0-2+b5_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b5) ... Selecting previously unselected package libpng16-16t64:amd64. Preparing to unpack .../04-libpng16-16t64_1.6.44-2_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.44-2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../05-libfreetype6_2.13.3+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package libfontenc1:amd64. Preparing to unpack .../08-libfontenc1_1%3a1.1.8-1+b1_amd64.deb ... Unpacking libfontenc1:amd64 (1:1.1.8-1+b1) ... Selecting previously unselected package x11-common. Preparing to unpack .../09-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../10-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../11-xfonts-utils_1%3a7.7+7_amd64.deb ... Unpacking xfonts-utils (1:7.7+7) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../12-fonts-urw-base35_20200910-8_all.deb ... Unpacking fonts-urw-base35 (20200910-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../13-fontconfig-config_2.15.0-1.1+b1_amd64.deb ... Unpacking fontconfig-config (2.15.0-1.1+b1) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../14-libfontconfig1_2.15.0-1.1+b1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.15.0-1.1+b1) ... Selecting previously unselected package libsharpyuv0:amd64. Preparing to unpack .../15-libsharpyuv0_1.4.0-0.1+b1_amd64.deb ... Unpacking libsharpyuv0:amd64 (1.4.0-0.1+b1) ... Selecting previously unselected package libdav1d7:amd64. Preparing to unpack .../16-libdav1d7_1.5.0-1+b1_amd64.deb ... Unpacking libdav1d7:amd64 (1.5.0-1+b1) ... Selecting previously unselected package libheif-plugin-dav1d:amd64. Preparing to unpack .../17-libheif-plugin-dav1d_1.19.3-1_amd64.deb ... Unpacking libheif-plugin-dav1d:amd64 (1.19.3-1) ... Selecting previously unselected package libde265-0:amd64. Preparing to unpack .../18-libde265-0_1.0.15-1+b2_amd64.deb ... Unpacking libde265-0:amd64 (1.0.15-1+b2) ... Selecting previously unselected package libheif-plugin-libde265:amd64. Preparing to unpack .../19-libheif-plugin-libde265_1.19.3-1_amd64.deb ... Unpacking libheif-plugin-libde265:amd64 (1.19.3-1) ... Selecting previously unselected package libheif1:amd64. Preparing to unpack .../20-libheif1_1.19.3-1_amd64.deb ... Unpacking libheif1:amd64 (1.19.3-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../21-libjbig0_2.1-6.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1+b2) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../22-libjpeg62-turbo_1%3a2.1.5-3+b1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../23-liblcms2-2_2.16-2_amd64.deb ... Unpacking liblcms2-2:amd64 (2.16-2) ... Selecting previously unselected package libglib2.0-0t64:amd64. Preparing to unpack .../24-libglib2.0-0t64_2.82.2-2_amd64.deb ... Unpacking libglib2.0-0t64:amd64 (2.82.2-2) ... Selecting previously unselected package liblqr-1-0:amd64. Preparing to unpack .../25-liblqr-1-0_0.4.2-2.1+b2_amd64.deb ... Unpacking liblqr-1-0:amd64 (0.4.2-2.1+b2) ... Selecting previously unselected package libltdl7:amd64. Preparing to unpack .../26-libltdl7_2.4.7-8_amd64.deb ... Unpacking libltdl7:amd64 (2.4.7-8) ... Selecting previously unselected package libopenjp2-7:amd64. Preparing to unpack .../27-libopenjp2-7_2.5.0-2+b4_amd64.deb ... Unpacking libopenjp2-7:amd64 (2.5.0-2+b4) ... Selecting previously unselected package libraw23t64:amd64. Preparing to unpack .../28-libraw23t64_0.21.3-1+b1_amd64.deb ... Unpacking libraw23t64:amd64 (0.21.3-1+b1) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../29-libdeflate0_1.22-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.22-1) ... Selecting previously unselected package liblerc4:amd64. Preparing to unpack .../30-liblerc4_4.0.0+ds-5_amd64.deb ... Unpacking liblerc4:amd64 (4.0.0+ds-5) ... Selecting previously unselected package libwebp7:amd64. Preparing to unpack .../31-libwebp7_1.4.0-0.1+b1_amd64.deb ... Unpacking libwebp7:amd64 (1.4.0-0.1+b1) ... Selecting previously unselected package libtiff6:amd64. Preparing to unpack .../32-libtiff6_4.5.1+git230720-5_amd64.deb ... Unpacking libtiff6:amd64 (4.5.1+git230720-5) ... Selecting previously unselected package libwebpdemux2:amd64. Preparing to unpack .../33-libwebpdemux2_1.4.0-0.1+b1_amd64.deb ... Unpacking libwebpdemux2:amd64 (1.4.0-0.1+b1) ... Selecting previously unselected package libwebpmux3:amd64. Preparing to unpack .../34-libwebpmux3_1.4.0-0.1+b1_amd64.deb ... Unpacking libwebpmux3:amd64 (1.4.0-0.1+b1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../35-libxau6_1%3a1.0.11-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.11-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../36-libxdmcp6_1%3a1.1.2-3+b2_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3+b2) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../37-libxcb1_1.17.0-2+b1_amd64.deb ... Unpacking libxcb1:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../38-libx11-data_2%3a1.8.10-2_all.deb ... Unpacking libx11-data (2:1.8.10-2) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../39-libx11-6_2%3a1.8.10-2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.10-2) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../40-libxext6_2%3a1.3.4-1+b2_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b2) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../41-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../42-libxml2_2.12.7+dfsg+really2.9.14-0.2_amd64.deb ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... 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Setting up debhelper (13.20) ... Setting up libxaw7:amd64 (2:1.0.16-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up r-base-core (4.4.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.2-1) ... Setting up coinor-libcbc3.1:amd64 (2.10.12+ds-1) ... Setting up r-cran-sourcetools (0.1.7-1-1) ... Setting up r-cran-commonmark (1.9.2-1) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.4-1) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up r-cran-rappdirs (0.3.3-1) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up r-cran-littler (0.3.20-1) ... Setting up r-cran-fs (1.6.4+dfsg-1) ... Setting up r-cran-rcpp (1.0.13-1-1) ... Setting up r-cran-rlang (1.1.4-1) ... Setting up littler (0.3.20-1) ... Setting up r-cran-xfun (0.49+dfsg-1) ... Setting up r-cran-withr (3.0.2+dfsg-1) ... Setting up r-cran-mime (0.12-2) ... Setting up r-cran-base64enc (0.1-3-3) ... Setting up r-cran-digest (0.6.37-1) ... Setting up r-cran-yaml (2.3.10-1) ... Setting up r-cran-evaluate (1.0.0-1) ... Setting up r-cran-highr (0.11+dfsg-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up r-cran-glue (1.7.0-1) ... Setting up python3-markupsafe (2.1.5-1+b1) ... Setting up r-cran-xtable (1:1.8-4-2) ... Setting up python3-wheel (0.44.0-2) ... Setting up r-cran-cli (3.6.3-1) ... Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... Setting up python3-plac (1.4.3-1) ... Setting up python3-platformdirs (4.3.6-1) ... Setting up python3-psutil (5.9.8-2) ... Setting up python3-tz (2024.1-2) ... Setting up python3-ratelimiter (1.2.0.post0-4) ... Setting up r-cran-fastmap (1.2.0-1) ... Setting up python3-six (1.16.0-7) ... Setting up r-cran-jsonlite (1.8.9+dfsg-1) ... Setting up python3-pil:amd64 (10.4.0-1) ... Setting up python3-roman (4.2-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.1-1) ... Setting up coinor-cbc (2.10.12+ds-1) ... Setting up python3-pyproject-hooks (1.2.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-humanfriendly (10.0-6) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-spython (0.3.13-2) ... Setting up python3-sphinx-bootstrap-theme (0.8.1-5) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up python3-werkzeug (3.0.4-1) ... Setting up python3-jmespath (1.0.1-1) ... Setting up python3-dpath (2.2.0-1) ... Setting up python3-connection-pool (0.0.3-2) ... Setting up python3-idna (3.8-2) ... Setting up python3-wrapt (1.15.0-3) ... Setting up python3-throttler (1.2.2-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up r-cran-later (1.3.2+dfsg-1) ... Setting up r-cran-htmltools (0.5.8.1-1) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up r-cran-tinytex (0.53-1) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up r-cran-knitr (1.48+dfsg-1) ... Setting up python3-rpds-py (0.21.0-1) ... Setting up python3-fastjsonschema (2.20.0-1) ... Setting up python3-lxml:amd64 (5.3.0-1) ... Setting up python3-rdflib (7.1.1-2) ... Setting up python3-traitlets (5.14.3+really5.14.3-1) ... Setting up r-cran-cachem (1.1.0-1) ... Setting up r-cran-sass (0.4.9+dfsg-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-msgpack (1.0.3-3+b2) ... Setting up python3-datrie:amd64 (0.8.2-5) ... Setting up environment-modules (5.4.0-1) ... Setting up python3-tzlocal (5.2-1.1) ... Setting up python3-build (1.2.2-1) ... Setting up python3-argcomplete (3.5.1-1) ... Setting up python3-coloredlogs (15.0.1-1) ... Setting up python3-smmap (6.0.0-1) ... Setting up python3-mistune (3.0.2-2) ... Setting up python3-jupyter-core (5.7.2-4) ... Setting up python3-cffi-backend:amd64 (1.17.1-2) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-blinker (1.8.2-1) ... Setting up python3-commonmark (0.9.1-6) ... Setting up python3-toposort (1.10-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-configargparse (1.7-1) ... Setting up python3-arcp (0.2.1-6) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (24.2.0-1) ... Setting up python3-filelock (3.16.1-1) ... Setting up python3-cairo (1.26.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-smart-open (7.0.5-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-defusedxml (0.7.1-2) ... Setting up python3-pulp (2.7.0+dfsg-4) ... /usr/lib/python3/dist-packages/pulp/apis/xpress_api.py:322: SyntaxWarning: invalid escape sequence '\ ' """ Setting up python3-charset-normalizer (3.4.0-1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up python3-mypy-extensions (1.0.0-1) ... Setting up python3-ply (3.11-7) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-ruamel.yaml.clib:amd64 (0.2.8+ds-2) ... Setting up r-cran-fontawesome (0.5.2-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-itsdangerous (2.2.0-1) ... Setting up python3-yaml (6.0.2-1) ... Setting up python3-gitdb (4.0.11-1) ... Setting up python3-click (8.1.7-2) ... Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... Setting up python3-yte (1.5.4-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-stone (3.3.7-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-git (3.1.37-3) ... Setting up r-cran-memoise (2.0.1-1) ... Setting up r-cran-promises (1.3.0+dfsg-1) ... Setting up python3-ruamel.yaml (0.18.6+ds-3) ... Setting up python3-pytest-mock (3.14.0-2) ... Setting up python3-referencing (0.35.1-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-py (1.11.0-2) ... Setting up python3-babel (2.14.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-flask (3.0.3-1) ... Setting up r-cran-httpuv (1.6.15+dfsg-1) ... Setting up python3-networkx (3.2.1-4) ... Setting up python3-prov (2.0.1-1) ... Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up r-cran-bslib (0.7.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-retry (0.9.2-3) ... Setting up python3-numpy (1:1.26.4+ds-11) ... Setting up python3-reportlab (4.2.5-1) ... Setting up python3-rpy2 (3.5.16-3) ... Setting up python3-stopit (1.1.2-3) ... Setting up python3-cachecontrol (0.14.1-1) ... Setting up python3-jsonschema-specifications (2023.12.1-2) ... Setting up python3-dropbox (12.0.2-1) ... Setting up dh-python (6.20241024) ... Setting up pybuild-plugin-pyproject (6.20241024) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-5) ... Setting up python3-schema-salad (8.7.20240905150001-1) ... Setting up r-cran-shiny (1.9.1+dfsg-1) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Setting up cwl-upgrader (1.2.11-1) ... Setting up python3-jsonschema (4.19.2-5) ... Setting up python3-requests-mock (1.12.1-2) ... Setting up python3-botocore (1.34.46+repack-1) ... Setting up r-cran-rmarkdown (2.28+dfsg-1) ... Setting up python3-pytools (2024.1.14-1) ... Setting up python3-s3transfer (0.10.1-1) ... Setting up python3-cwl-utils (0.35-1) ... Setting up python3-nbformat (5.9.1-1) ... Setting up python3-boto3 (1.34.46+dfsg-1) ... Setting up libheif-plugin-dav1d:amd64 (1.19.3-1) ... Setting up libheif-plugin-libde265:amd64 (1.19.3-1) ... Setting up libheif1:amd64 (1.19.3-1) ... Setting up libgd3:amd64 (2.3.3-12+b1) ... Setting up libgvc6 (2.42.4-2+b1) ... Setting up libmagickcore-7.q16-10:amd64 (8:7.1.1.39+dfsg1-2) ... Setting up graphviz (2.42.4-2+b1) ... Setting up libmagickwand-7.q16-10:amd64 (8:7.1.1.39+dfsg1-2) ... Setting up python3-pydot (2.0.0-3) ... Setting up cwltool (3.1.20241024121129-1) ... Setting up imagemagick-7.q16 (8:7.1.1.39+dfsg1-2) ... update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare-im7 (compare-im7) in auto mode update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate-im7 (animate-im7) in auto mode update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert-im7 (convert-im7) in auto mode update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite-im7 (composite-im7) in auto mode update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure-im7 (conjure-im7) in auto mode update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import-im7 (import-im7) in auto mode update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify-im7 (identify-im7) in auto mode update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream-im7 (stream-im7) in auto mode update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display-im7 (display-im7) in auto mode update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage-im7 (montage-im7) in auto mode update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify-im7 (mogrify-im7) in auto mode update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick (magick) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick) doesn't exist update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick-im7 (magick-im7) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-im7.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick-im7) doesn't exist update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script (magick-script) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script) doesn't exist update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script-im7 (magick-script-im7) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script-im7.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script-im7) doesn't exist Setting up imagemagick (8:7.1.1.39+dfsg1-2) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.21.2+dfsg-2) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.84+dfsg-4) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up python3-sphinx (7.4.7-4) ... Setting up python3-recommonmark (0.7.1+ds-5) ... /usr/lib/python3/dist-packages/recommonmark/transform.py:254: SyntaxWarning: invalid escape sequence '\w' match = re.search('[ ]?[\w_-]+::.*', language) Setting up python3-sphinxcontrib.jquery (4.1-5) ... Setting up python3-sphinx-argparse (0.5.2-1) ... Setting up python3-sphinx-rtd-theme (3.0.1+dfsg-1) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/snakemake-7.32.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../snakemake_7.32.4-6_source.changes dpkg-buildpackage: info: source package snakemake dpkg-buildpackage: info: source version 7.32.4-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Rebecca N. Palmer dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/snakemake-7.32.4' dh_auto_clean find . -name '__pycache__' | xargs -r rm -r rm -rf .snakemake snakemake.egg-info make[1]: Leaving directory '/build/reproducible-path/snakemake-7.32.4' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake * Building wheel... running bdist_wheel running build running build_py creating build/lib/snakemake copying snakemake/profiles.py -> build/lib/snakemake copying snakemake/__init__.py -> build/lib/snakemake copying snakemake/stats.py -> build/lib/snakemake copying snakemake/checkpoints.py -> build/lib/snakemake copying snakemake/modules.py -> build/lib/snakemake copying snakemake/sourcecache.py -> build/lib/snakemake copying snakemake/benchmark.py -> build/lib/snakemake copying snakemake/jobs.py -> build/lib/snakemake copying snakemake/ruleinfo.py -> build/lib/snakemake copying snakemake/_version.py -> build/lib/snakemake copying snakemake/wrapper.py -> build/lib/snakemake copying snakemake/persistence.py -> build/lib/snakemake copying snakemake/parser.py -> build/lib/snakemake copying snakemake/scheduler.py -> build/lib/snakemake copying snakemake/path_modifier.py -> build/lib/snakemake copying snakemake/dag.py -> build/lib/snakemake copying snakemake/decorators.py -> build/lib/snakemake copying snakemake/io.py -> build/lib/snakemake copying snakemake/notebook.py -> build/lib/snakemake copying snakemake/workflow.py -> build/lib/snakemake copying snakemake/rules.py -> build/lib/snakemake copying snakemake/__main__.py -> build/lib/snakemake copying snakemake/interfaces.py -> build/lib/snakemake copying snakemake/resources.py -> build/lib/snakemake copying snakemake/output_index.py -> build/lib/snakemake copying snakemake/logging.py -> build/lib/snakemake copying snakemake/target_jobs.py -> build/lib/snakemake copying snakemake/utils.py -> build/lib/snakemake copying snakemake/cwl.py -> build/lib/snakemake copying snakemake/script.py -> build/lib/snakemake copying snakemake/gui.py -> build/lib/snakemake copying snakemake/shell.py -> build/lib/snakemake copying snakemake/exceptions.py -> build/lib/snakemake creating build/lib/snakemake/linting copying snakemake/linting/__init__.py -> build/lib/snakemake/linting copying snakemake/linting/snakefiles.py -> build/lib/snakemake/linting copying snakemake/linting/rules.py -> build/lib/snakemake/linting copying snakemake/linting/links.py -> build/lib/snakemake/linting creating build/lib/snakemake/remote copying snakemake/remote/__init__.py -> build/lib/snakemake/remote copying snakemake/remote/EGA.py -> build/lib/snakemake/remote copying snakemake/remote/HTTP.py -> build/lib/snakemake/remote copying snakemake/remote/NCBI.py -> build/lib/snakemake/remote copying snakemake/remote/gfal.py -> build/lib/snakemake/remote copying snakemake/remote/GS.py -> build/lib/snakemake/remote copying snakemake/remote/AzBlob.py -> build/lib/snakemake/remote copying snakemake/remote/XRootD.py -> build/lib/snakemake/remote copying snakemake/remote/FTP.py -> build/lib/snakemake/remote copying snakemake/remote/dropbox.py -> build/lib/snakemake/remote copying snakemake/remote/zenodo.py -> build/lib/snakemake/remote copying snakemake/remote/SFTP.py -> build/lib/snakemake/remote copying snakemake/remote/S3.py -> build/lib/snakemake/remote copying snakemake/remote/iRODS.py -> build/lib/snakemake/remote copying snakemake/remote/webdav.py -> build/lib/snakemake/remote copying snakemake/remote/gridftp.py -> build/lib/snakemake/remote copying snakemake/remote/S3Mocked.py -> build/lib/snakemake/remote creating build/lib/snakemake/executors copying snakemake/executors/__init__.py -> build/lib/snakemake/executors copying snakemake/executors/ga4gh_tes.py -> build/lib/snakemake/executors copying snakemake/executors/flux.py -> build/lib/snakemake/executors copying snakemake/executors/common.py -> build/lib/snakemake/executors copying snakemake/executors/google_lifesciences_helper.py -> build/lib/snakemake/executors copying snakemake/executors/google_lifesciences.py -> build/lib/snakemake/executors copying snakemake/executors/azure_batch.py -> build/lib/snakemake/executors creating build/lib/snakemake/report copying snakemake/report/__init__.py -> build/lib/snakemake/report copying snakemake/report/rulegraph_spec.py -> build/lib/snakemake/report creating build/lib/snakemake/unit_tests copying snakemake/unit_tests/__init__.py -> build/lib/snakemake/unit_tests creating build/lib/snakemake/common copying snakemake/common/__init__.py -> build/lib/snakemake/common copying snakemake/common/tbdstring.py -> build/lib/snakemake/common creating build/lib/snakemake/caching copying snakemake/caching/__init__.py -> build/lib/snakemake/caching copying snakemake/caching/local.py -> build/lib/snakemake/caching copying snakemake/caching/hash.py -> build/lib/snakemake/caching copying snakemake/caching/remote.py -> build/lib/snakemake/caching creating build/lib/snakemake/deployment copying snakemake/deployment/__init__.py -> build/lib/snakemake/deployment copying snakemake/deployment/containerize.py -> build/lib/snakemake/deployment copying snakemake/deployment/env_modules.py -> build/lib/snakemake/deployment copying snakemake/deployment/conda.py -> build/lib/snakemake/deployment copying snakemake/deployment/singularity.py -> build/lib/snakemake/deployment creating build/lib/snakemake/template_rendering copying snakemake/template_rendering/__init__.py -> build/lib/snakemake/template_rendering copying snakemake/template_rendering/jinja2.py -> build/lib/snakemake/template_rendering copying snakemake/template_rendering/yte.py -> build/lib/snakemake/template_rendering creating build/lib/snakemake/executors/slurm copying snakemake/executors/slurm/__init__.py -> build/lib/snakemake/executors/slurm copying snakemake/executors/slurm/slurm_jobstep.py -> build/lib/snakemake/executors/slurm copying snakemake/executors/slurm/slurm_submit.py -> build/lib/snakemake/executors/slurm creating build/lib/snakemake/report/data copying snakemake/report/data/__init__.py -> build/lib/snakemake/report/data copying snakemake/report/data/timeline.py -> build/lib/snakemake/report/data copying snakemake/report/data/runtimes.py -> build/lib/snakemake/report/data copying snakemake/report/data/packages.py -> build/lib/snakemake/report/data copying snakemake/report/data/common.py -> build/lib/snakemake/report/data copying snakemake/report/data/rules.py -> build/lib/snakemake/report/data copying snakemake/report/data/results.py -> build/lib/snakemake/report/data copying snakemake/report/data/rulegraph.py -> build/lib/snakemake/report/data copying snakemake/report/data/categories.py -> build/lib/snakemake/report/data creating build/lib/snakemake/report/template copying snakemake/report/template/__init__.py -> build/lib/snakemake/report/template creating build/lib/snakemake/report/template/components copying snakemake/report/template/components/__init__.py -> build/lib/snakemake/report/template/components creating build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/__init__.py -> build/lib/snakemake/unit_tests/templates copying snakemake/report.css -> build/lib/snakemake copying snakemake/gui.html -> build/lib/snakemake copying snakemake/executors/jobscript.sh -> build/lib/snakemake/executors copying snakemake/report/template/style.css -> build/lib/snakemake/report/template copying snakemake/report/template/index.html.jinja2 -> build/lib/snakemake/report/template copying snakemake/report/template/logo.svg -> build/lib/snakemake/report/template copying snakemake/report/template/components/report_info.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/icon.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/stats.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/content.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/abstract_menu.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/navbar.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/result_view_button.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/rule_info.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/rule_graph.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/breadcrumbs.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/result_info.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/button.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/menu.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/abstract_results.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/list_heading.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/subcategory.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/category.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/common.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/list_item.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/search_results.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/app.js -> build/lib/snakemake/report/template/components copying snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/common.py.jinja2 -> build/lib/snakemake/unit_tests/templates UPDATING build/lib/snakemake/_version.py set build/lib/snakemake/_version.py to '7.32.4' installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/profiles.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/stats.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/checkpoints.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/modules.py -> build/bdist.linux-x86_64/wheel/./snakemake creating build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/linting copying build/lib/snakemake/linting/snakefiles.py -> build/bdist.linux-x86_64/wheel/./snakemake/linting copying build/lib/snakemake/linting/rules.py -> build/bdist.linux-x86_64/wheel/./snakemake/linting copying build/lib/snakemake/linting/links.py -> build/bdist.linux-x86_64/wheel/./snakemake/linting copying build/lib/snakemake/sourcecache.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/benchmark.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/jobs.py -> build/bdist.linux-x86_64/wheel/./snakemake creating build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote copying build/lib/snakemake/remote/EGA.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote copying build/lib/snakemake/remote/HTTP.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote copying build/lib/snakemake/remote/NCBI.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote copying build/lib/snakemake/remote/gfal.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote copying build/lib/snakemake/remote/GS.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote copying build/lib/snakemake/remote/AzBlob.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote copying build/lib/snakemake/remote/XRootD.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote copying build/lib/snakemake/remote/FTP.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote copying build/lib/snakemake/remote/dropbox.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote copying build/lib/snakemake/remote/zenodo.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote copying build/lib/snakemake/remote/SFTP.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote copying build/lib/snakemake/remote/S3.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote copying build/lib/snakemake/remote/iRODS.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote copying build/lib/snakemake/remote/webdav.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote copying build/lib/snakemake/remote/gridftp.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote copying build/lib/snakemake/remote/S3Mocked.py -> build/bdist.linux-x86_64/wheel/./snakemake/remote copying build/lib/snakemake/ruleinfo.py -> build/bdist.linux-x86_64/wheel/./snakemake creating build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/executors copying build/lib/snakemake/executors/jobscript.sh -> build/bdist.linux-x86_64/wheel/./snakemake/executors copying build/lib/snakemake/executors/ga4gh_tes.py -> build/bdist.linux-x86_64/wheel/./snakemake/executors copying build/lib/snakemake/executors/flux.py -> build/bdist.linux-x86_64/wheel/./snakemake/executors copying build/lib/snakemake/executors/common.py -> build/bdist.linux-x86_64/wheel/./snakemake/executors creating build/bdist.linux-x86_64/wheel/snakemake/executors/slurm copying build/lib/snakemake/executors/slurm/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/executors/slurm copying build/lib/snakemake/executors/slurm/slurm_jobstep.py -> build/bdist.linux-x86_64/wheel/./snakemake/executors/slurm copying build/lib/snakemake/executors/slurm/slurm_submit.py -> build/bdist.linux-x86_64/wheel/./snakemake/executors/slurm copying build/lib/snakemake/executors/google_lifesciences_helper.py -> build/bdist.linux-x86_64/wheel/./snakemake/executors copying build/lib/snakemake/executors/google_lifesciences.py -> build/bdist.linux-x86_64/wheel/./snakemake/executors copying build/lib/snakemake/executors/azure_batch.py -> build/bdist.linux-x86_64/wheel/./snakemake/executors copying build/lib/snakemake/_version.py -> build/bdist.linux-x86_64/wheel/./snakemake creating build/bdist.linux-x86_64/wheel/snakemake/report copying build/lib/snakemake/report/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/report copying build/lib/snakemake/report/rulegraph_spec.py -> build/bdist.linux-x86_64/wheel/./snakemake/report creating build/bdist.linux-x86_64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/data copying build/lib/snakemake/report/data/timeline.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/data copying build/lib/snakemake/report/data/runtimes.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/data copying build/lib/snakemake/report/data/packages.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/data copying build/lib/snakemake/report/data/common.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/data copying build/lib/snakemake/report/data/rules.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/data copying build/lib/snakemake/report/data/results.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/data copying build/lib/snakemake/report/data/rulegraph.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/data copying build/lib/snakemake/report/data/categories.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/data creating build/bdist.linux-x86_64/wheel/snakemake/report/template copying build/lib/snakemake/report/template/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/template copying build/lib/snakemake/report/template/logo.svg -> build/bdist.linux-x86_64/wheel/./snakemake/report/template copying build/lib/snakemake/report/template/index.html.jinja2 -> build/bdist.linux-x86_64/wheel/./snakemake/report/template creating build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/report_info.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/icon.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/stats.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/content.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/abstract_menu.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/navbar.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/result_view_button.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/rule_info.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/rule_graph.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/breadcrumbs.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/result_info.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/button.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/menu.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/abstract_results.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/list_heading.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/subcategory.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/category.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/common.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/list_item.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/search_results.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/app.js -> build/bdist.linux-x86_64/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/style.css -> build/bdist.linux-x86_64/wheel/./snakemake/report/template copying build/lib/snakemake/wrapper.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/persistence.py -> build/bdist.linux-x86_64/wheel/./snakemake creating build/bdist.linux-x86_64/wheel/snakemake/unit_tests copying build/lib/snakemake/unit_tests/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/unit_tests creating build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/bdist.linux-x86_64/wheel/./snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/common.py.jinja2 -> build/bdist.linux-x86_64/wheel/./snakemake/unit_tests/templates copying build/lib/snakemake/parser.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/scheduler.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/path_modifier.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/dag.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/decorators.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/io.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/notebook.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/report.css -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/workflow.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/rules.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/__main__.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/interfaces.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/resources.py -> build/bdist.linux-x86_64/wheel/./snakemake creating build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/common copying build/lib/snakemake/common/tbdstring.py -> build/bdist.linux-x86_64/wheel/./snakemake/common copying build/lib/snakemake/output_index.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/logging.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/target_jobs.py -> build/bdist.linux-x86_64/wheel/./snakemake creating build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/caching copying build/lib/snakemake/caching/local.py -> build/bdist.linux-x86_64/wheel/./snakemake/caching copying build/lib/snakemake/caching/hash.py -> build/bdist.linux-x86_64/wheel/./snakemake/caching copying build/lib/snakemake/caching/remote.py -> build/bdist.linux-x86_64/wheel/./snakemake/caching copying build/lib/snakemake/utils.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/cwl.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/script.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/gui.html -> build/bdist.linux-x86_64/wheel/./snakemake creating build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/deployment copying build/lib/snakemake/deployment/containerize.py -> build/bdist.linux-x86_64/wheel/./snakemake/deployment copying build/lib/snakemake/deployment/env_modules.py -> build/bdist.linux-x86_64/wheel/./snakemake/deployment copying build/lib/snakemake/deployment/conda.py -> build/bdist.linux-x86_64/wheel/./snakemake/deployment copying build/lib/snakemake/deployment/singularity.py -> build/bdist.linux-x86_64/wheel/./snakemake/deployment copying build/lib/snakemake/gui.py -> build/bdist.linux-x86_64/wheel/./snakemake copying build/lib/snakemake/shell.py -> build/bdist.linux-x86_64/wheel/./snakemake creating build/bdist.linux-x86_64/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/__init__.py -> build/bdist.linux-x86_64/wheel/./snakemake/template_rendering copying build/lib/snakemake/template_rendering/jinja2.py -> build/bdist.linux-x86_64/wheel/./snakemake/template_rendering copying build/lib/snakemake/template_rendering/yte.py -> build/bdist.linux-x86_64/wheel/./snakemake/template_rendering copying build/lib/snakemake/exceptions.py -> build/bdist.linux-x86_64/wheel/./snakemake running install_egg_info running egg_info creating snakemake.egg-info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt writing manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' Copying snakemake.egg-info to build/bdist.linux-x86_64/wheel/./snakemake-7.32.4.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/snakemake-7.32.4.dist-info/WHEEL creating '/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/.tmp-98fnzvxj/snakemake-7.32.4-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'snakemake/__init__.py' adding 'snakemake/__main__.py' adding 'snakemake/_version.py' adding 'snakemake/benchmark.py' adding 'snakemake/checkpoints.py' adding 'snakemake/cwl.py' adding 'snakemake/dag.py' adding 'snakemake/decorators.py' adding 'snakemake/exceptions.py' adding 'snakemake/gui.html' adding 'snakemake/gui.py' adding 'snakemake/interfaces.py' adding 'snakemake/io.py' adding 'snakemake/jobs.py' adding 'snakemake/logging.py' adding 'snakemake/modules.py' adding 'snakemake/notebook.py' adding 'snakemake/output_index.py' adding 'snakemake/parser.py' adding 'snakemake/path_modifier.py' adding 'snakemake/persistence.py' adding 'snakemake/profiles.py' adding 'snakemake/report.css' adding 'snakemake/resources.py' adding 'snakemake/ruleinfo.py' adding 'snakemake/rules.py' adding 'snakemake/scheduler.py' adding 'snakemake/script.py' adding 'snakemake/shell.py' adding 'snakemake/sourcecache.py' adding 'snakemake/stats.py' adding 'snakemake/target_jobs.py' adding 'snakemake/utils.py' adding 'snakemake/workflow.py' adding 'snakemake/wrapper.py' adding 'snakemake/caching/__init__.py' adding 'snakemake/caching/hash.py' adding 'snakemake/caching/local.py' adding 'snakemake/caching/remote.py' adding 'snakemake/common/__init__.py' adding 'snakemake/common/tbdstring.py' adding 'snakemake/deployment/__init__.py' adding 'snakemake/deployment/conda.py' adding 'snakemake/deployment/containerize.py' adding 'snakemake/deployment/env_modules.py' adding 'snakemake/deployment/singularity.py' adding 'snakemake/executors/__init__.py' adding 'snakemake/executors/azure_batch.py' adding 'snakemake/executors/common.py' adding 'snakemake/executors/flux.py' adding 'snakemake/executors/ga4gh_tes.py' adding 'snakemake/executors/google_lifesciences.py' adding 'snakemake/executors/google_lifesciences_helper.py' adding 'snakemake/executors/jobscript.sh' adding 'snakemake/executors/slurm/__init__.py' adding 'snakemake/executors/slurm/slurm_jobstep.py' adding 'snakemake/executors/slurm/slurm_submit.py' adding 'snakemake/linting/__init__.py' adding 'snakemake/linting/links.py' adding 'snakemake/linting/rules.py' adding 'snakemake/linting/snakefiles.py' adding 'snakemake/remote/AzBlob.py' adding 'snakemake/remote/EGA.py' adding 'snakemake/remote/FTP.py' adding 'snakemake/remote/GS.py' adding 'snakemake/remote/HTTP.py' adding 'snakemake/remote/NCBI.py' adding 'snakemake/remote/S3.py' adding 'snakemake/remote/S3Mocked.py' adding 'snakemake/remote/SFTP.py' adding 'snakemake/remote/XRootD.py' adding 'snakemake/remote/__init__.py' adding 'snakemake/remote/dropbox.py' adding 'snakemake/remote/gfal.py' adding 'snakemake/remote/gridftp.py' adding 'snakemake/remote/iRODS.py' adding 'snakemake/remote/webdav.py' adding 'snakemake/remote/zenodo.py' adding 'snakemake/report/__init__.py' adding 'snakemake/report/rulegraph_spec.py' adding 'snakemake/report/data/__init__.py' adding 'snakemake/report/data/categories.py' adding 'snakemake/report/data/common.py' adding 'snakemake/report/data/packages.py' adding 'snakemake/report/data/results.py' adding 'snakemake/report/data/rulegraph.py' adding 'snakemake/report/data/rules.py' adding 'snakemake/report/data/runtimes.py' adding 'snakemake/report/data/timeline.py' adding 'snakemake/report/template/__init__.py' adding 'snakemake/report/template/index.html.jinja2' adding 'snakemake/report/template/logo.svg' adding 'snakemake/report/template/style.css' adding 'snakemake/report/template/components/__init__.py' adding 'snakemake/report/template/components/abstract_menu.js' adding 'snakemake/report/template/components/abstract_results.js' adding 'snakemake/report/template/components/app.js' adding 'snakemake/report/template/components/breadcrumbs.js' adding 'snakemake/report/template/components/button.js' adding 'snakemake/report/template/components/category.js' adding 'snakemake/report/template/components/common.js' adding 'snakemake/report/template/components/content.js' adding 'snakemake/report/template/components/icon.js' adding 'snakemake/report/template/components/list_heading.js' adding 'snakemake/report/template/components/list_item.js' adding 'snakemake/report/template/components/menu.js' adding 'snakemake/report/template/components/navbar.js' adding 'snakemake/report/template/components/report_info.js' adding 'snakemake/report/template/components/result_info.js' adding 'snakemake/report/template/components/result_view_button.js' adding 'snakemake/report/template/components/rule_graph.js' adding 'snakemake/report/template/components/rule_info.js' adding 'snakemake/report/template/components/search_results.js' adding 'snakemake/report/template/components/stats.js' adding 'snakemake/report/template/components/subcategory.js' adding 'snakemake/template_rendering/__init__.py' adding 'snakemake/template_rendering/jinja2.py' adding 'snakemake/template_rendering/yte.py' adding 'snakemake/unit_tests/__init__.py' adding 'snakemake/unit_tests/templates/__init__.py' adding 'snakemake/unit_tests/templates/common.py.jinja2' adding 'snakemake/unit_tests/templates/ruletest.py.jinja2' adding 'snakemake-7.32.4.dist-info/AUTHORS.rst' adding 'snakemake-7.32.4.dist-info/LICENSE.md' adding 'snakemake-7.32.4.dist-info/METADATA' adding 'snakemake-7.32.4.dist-info/WHEEL' adding 'snakemake-7.32.4.dist-info/entry_points.txt' adding 'snakemake-7.32.4.dist-info/top_level.txt' adding 'snakemake-7.32.4.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built snakemake-7.32.4-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/reproducible-path/snakemake-7.32.4' PYTHONPATH=/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build \ cd docs && LC_ALL=C.UTF-8 LANGUAGE=C.UTF-8 make html make[2]: Entering directory '/build/reproducible-path/snakemake-7.32.4/docs' sphinx-build -b html -d _build/doctrees . _build/html Running Sphinx v7.4.7 loading translations [en]... done making output directory... done Converting `source_suffix = ['.rst', '.md']` to `source_suffix = {'.rst': 'restructuredtext', '.md': 'restructuredtext'}`. building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 38 source files that are out of date updating environment: [new config] 38 added, 0 changed, 0 removed reading sources... [ 3%] executing/caching reading sources... [ 5%] executing/cli reading sources... [ 8%] executing/cloud reading sources... [ 11%] executing/cluster reading sources... [ 13%] executing/grouping reading sources... [ 16%] executing/interoperability reading sources... [ 18%] executing/monitoring reading sources... [ 21%] executor_tutorial/azure_aks reading sources... [ 24%] executor_tutorial/azure_batch reading sources... [ 26%] executor_tutorial/flux reading sources... [ 29%] executor_tutorial/google_lifesciences reading sources... [ 32%] executor_tutorial/tutorial reading sources... [ 34%] getting_started/installation reading sources... [ 37%] index reading sources... [ 39%] project_info/authors reading sources... [ 42%] project_info/citations reading sources... [ 45%] project_info/contributing reading sources... [ 47%] project_info/faq reading sources... [ 50%] project_info/history reading sources... [ 53%] project_info/license reading sources... 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[100%] tutorial/tutorial /build/reproducible-path/snakemake-7.32.4/docs/executing/cli.rst:174: CRITICAL: Title level inconsistent: Use templating in profiles ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/snakemake-7.32.4/docs/executing/cli.rst:227: ERROR: Unknown directive type "argparse". .. argparse:: :module: snakemake :func: get_argument_parser :prog: snakemake All command line options can be printed by calling ``snakemake -h``. /build/reproducible-path/snakemake-7.32.4/docs/executing/cli.rst:111: WARNING: duplicate label profiles, other instance in /build/reproducible-path/snakemake-7.32.4/docs/executing/cli.rst /build/reproducible-path/snakemake-7.32.4/docs/executing/cloud.rst:233: WARNING: duplicate label machine types, other instance in /build/reproducible-path/snakemake-7.32.4/docs/executing/cloud.rst /build/reproducible-path/snakemake-7.32.4/docs/executing/cloud.rst:490: WARNING: duplicate label execution, other instance in /build/reproducible-path/snakemake-7.32.4/docs/executing/cloud.rst /build/reproducible-path/snakemake-7.32.4/docs/executing/cluster.rst:13: WARNING: Title overline too short. -------------- Executing on SLURM clusters -------------- /build/reproducible-path/snakemake-7.32.4/docs/executing/monitoring.rst:5: WARNING: duplicate label monitoring, other instance in /build/reproducible-path/snakemake-7.32.4/docs/executing/monitoring.rst /build/reproducible-path/snakemake-7.32.4/docs/executor_tutorial/azure_aks.rst:184: ERROR: Unexpected indentation. /build/reproducible-path/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:47: WARNING: Title underline too short. Create an Azure Storage Account and upload example data ::::::::::::::::::::::::::::::::::::::::::::::: /build/reproducible-path/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:47: WARNING: Title underline too short. Create an Azure Storage Account and upload example data ::::::::::::::::::::::::::::::::::::::::::::::: /build/reproducible-path/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:119: WARNING: Title underline too short. Azure Blob Storage Warning: ::::::::::::::::::: /build/reproducible-path/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:119: WARNING: Title underline too short. Azure Blob Storage Warning: ::::::::::::::::::: /build/reproducible-path/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:367: WARNING: Title underline too short. Defining a Start Task ::::: /build/reproducible-path/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:367: WARNING: Title underline too short. 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[100%] tutorial/tutorial /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /build/reproducible-path/snakemake-7.32.4/docs/executing/cluster.rst:65: WARNING: undefined label: 'snakefiles-mpi' /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /build/reproducible-path/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:266: WARNING: Lexing literal_block '# required env variables\nexport AZ_BLOB_PREFIX=snakemake-tutorial\nexport AZ_BATCH_ACCOUNT_URL="${batch_account_url}"\nexport AZ_BATCH_ACCOUNT_KEY="${az_batch_account_key}"\nexport AZ_BLOB_ACCOUNT_URL="${storage_account_url_with_sas}"\n\n# optional environment variables with defaults listed\n\n# network and identity\n# export BATCH_POOL_SUBNET_ID=\n# export BATCH_MANAGED_IDENTITY_RESOURCE_ID=\n# export BATCH_MANAGED_IDENTITY_CLIENT_ID=\n\n# if unset, default is "classic"\n# export BATCH_NODE_COMMUNICATION_SIMPLIFIED=true\n\n# don\'t recommend changing\n# export BATCH_POOL_IMAGE_PUBLISHER=microsoft-azure-batch\n# export BATCH_POOL_IMAGE_OFFER=ubuntu-server-container\n# export BATCH_POOL_IMAGE_SKU=20-04-lts\n# export BATCH_POOL_RESOURCE_FILE_PREFIX=resource-files\n\n# export BATCH_POOL_VM_CONTAINER_IMAGE=ubuntu\n# export BATCH_POOL_VM_NODE_AGENT_SKU_ID="batch.node.ubuntu 20.04"\n\n# can be used to add a startup task to the batch nodes formatted as an sas url to a bash script\n# export BATCH_NODE_START_TASK_SAS_URL=\n\n# can be useful to alter task distribution across nodes\n\n# export BATCH_POOL_VM_SIZE=Standard_D2_v3\n# export BATCH_NODE_FILL_TYPE=spread\n# export BATCH_POOL_NODE_COUNT=1\n# export BATCH_TASKS_PER_NODE=1\n\n# container registry configuration to pull container image from custom registry\n# export BATCH_CONTAINER_REGISTRY_URL=\n# export BATCH_CONTAINER_REGISTRY_USER=\n# export BATCH_CONTAINER_REGISTRY_PASS=\n\nsnakemake \\\n --jobs 3 \\\n -rpf --verbose --default-remote-prefix $AZ_BLOB_PREFIX \\\n --use-conda \\\n --default-remote-provider AzBlob \\\n --envvars AZ_BLOB_ACCOUNT_URL \\\n --az-batch \\\n --container-image snakemake/snakemake \\\n --az-batch-account-url $AZ_BATCH_ACCOUNT_URL' as "console" resulted in an error at token: "'". 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title: no link will be generated /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /build/reproducible-path/snakemake-7.32.4/docs/snakefiles/best_practices.rst:22: WARNING: undefined label: 'snakefiles_tabular_configuration' /build/reproducible-path/snakemake-7.32.4/docs/snakefiles/best_practices.rst:22: WARNING: undefined label: 'snakefiles_peps' /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /build/reproducible-path/snakemake-7.32.4/docs/snakefiles/configuration.rst:35: WARNING: undefined label: 'api_reference_snakemake' /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /build/reproducible-path/snakemake-7.32.4/docs/snakefiles/foreign_wms.rst:30: WARNING: undefined label: 'snakefiles-local-rule' /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /build/reproducible-path/snakemake-7.32.4/docs/snakefiles/rules.rst:316: WARNING: undefined label: 'user_manual-snakemake_options' /build/reproducible-path/snakemake-7.32.4/docs/snakefiles/rules.rst:412: WARNING: undefined label: 'user_manual-snakemake_options' /build/reproducible-path/snakemake-7.32.4/docs/snakefiles/rules.rst:433: WARNING: undefined label: 'resources_remote_execution' /build/reproducible-path/snakemake-7.32.4/docs/snakefiles/rules.rst:441: WARNING: undefined label: 'resources_remote_execution' /build/reproducible-path/snakemake-7.32.4/docs/snakefiles/rules.rst:1108: WARNING: undefined label: 'snakefiles_external-scripts' /build/reproducible-path/snakemake-7.32.4/docs/snakefiles/rules.rst:1296: WARNING: undefined label: 'snakefiles_input-functions' /build/reproducible-path/snakemake-7.32.4/docs/snakefiles/rules.rst:1368: WARNING: undefined label: 'snakefiles_ensure' /build/reproducible-path/snakemake-7.32.4/docs/snakefiles/rules.rst:1957: WARNING: undefined label: 'job-grouping' /build/reproducible-path/snakemake-7.32.4/docs/snakefiles/rules.rst:1957: WARNING: undefined label: 'job-grouping' /build/reproducible-path/snakemake-7.32.4/docs/snakefiles/rules.rst:2420: WARNING: Pygments lexer name 'jinja2' is not known /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree 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/build/reproducible-path/snakemake-7.32.4/docs/tutorial/basics.rst:394: WARNING: undefined label: '.. _snakefiles-rules' /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated generating indices... genindex /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated done highlighting module code... writing additional pages... search /build/reproducible-path/snakemake-7.32.4/docs/index.rst:134: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated done copying images... [ 14%] executor_tutorial/workflow/upload-google-storage.png copying images... [ 29%] executor_tutorial/workflow/quals.svg copying images... [ 43%] executor_tutorial/workflow/results-google-storage.png copying images... [ 57%] project_info/img/idea.png copying images... [ 71%] snakefiles/images/snakemake-notebook-demo.gif copying images... [ 86%] tutorial/workflow/dag_index.png copying images... [100%] tutorial/workflow/dag_call.png dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 122 warnings. The HTML pages are in _build/html. Build finished. The HTML pages are in _build/html. make[2]: Leaving directory '/build/reproducible-path/snakemake-7.32.4/docs' make[1]: Leaving directory '/build/reproducible-path/snakemake-7.32.4' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/snakemake-7.32.4' . /etc/profile.d/modules.sh && PYBUILD_SYSTEM=custom dh_auto_test I: pybuild pybuild:308: chmod +x /build/reproducible-path/snakemake-7.32.4/bin/snakemake; cp -r /build/reproducible-path/snakemake-7.32.4/bin /build/reproducible-path/snakemake-7.32.4/tests /build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build I: pybuild base:311: python3.12 -m pytest -o faulthandler_timeout=60 -v /build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/tests/test*.py -k 'not test_cwl and not test_cwl_singularity and not test_url_include and not test_wrapper and not test_issue1083 and not test_github_issue78 and not test_container and not test_singularity and not test_singularity_conda and not test_convert_to_cwl and not test_report and not test_report_zip and not test_archive and not test_jupyter_notebook and not test_conda and not test_upstream_conda and not test_conda_custom_prefix and not test_script and not test_issue635 and not test_issue1093 and not test_default_resources and not test_default_remote and not test_remote and not test_output_file_cache_remote and not test_tibanna and not test_module_complex and not test_module_complex2 and not test_module_with_script and not test_module_report and not test_modules_meta_wrapper and not test_tes and not test_deploy_script and not test_deploy_hashing and not test_peppy and not test_modules_peppy and not test_report_display_code and not test_wrapper_local_git_prefix and not test_github_issue1396 and not test_az_batch_executor and not test_modules_prefix and not test_ancient and not test_github_issue1062 and not test_symlink_time_handling and not test_env_modules and not test_github_issue1460 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PASSED [100%] =============================== warnings summary =============================== tests/test_schema.py: 12 warnings tests/tests.py: 6 warnings /build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/snakemake/utils.py:50: DeprecationWarning: jsonschema.RefResolver is deprecated as of v4.18.0, in favor of the https://github.com/python-jsonschema/referencing library, which provides more compliant referencing behavior as well as more flexible APIs for customization. A future release will remove RefResolver. Please file a feature request (on referencing) if you are missing an API for the kind of customization you need. from jsonschema import validators, RefResolver tests/testapi.py::test_keep_logger /usr/lib/python3/dist-packages/stopit/__init__.py:10: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources tests/testapi.py::test_lockexception /usr/lib/python3/dist-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but tests/testapi.py::test_lockexception returned True, which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`? warnings.warn( tests/tests.py::test_glpk_solver :888: DeprecationWarning: This process (pid=59705) is multi-threaded, use of fork() may lead to deadlocks in the child. -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html = 256 passed, 46 skipped, 92 deselected, 1 xfailed, 21 warnings in 1857.98s (0:30:57) = cannot schedule new futures after shutdown I: pybuild pybuild:334: rm -fr /build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/bin /build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.12_snakemake/build/tests make[1]: Leaving directory '/build/reproducible-path/snakemake-7.32.4' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild debian/rules execute_after_dh_installdocs make[1]: Entering directory '/build/reproducible-path/snakemake-7.32.4' find debian -name '__pycache__' -o name '.gitignore' | xargs rm -rf find: paths must precede expression: `name' make[1]: Leaving directory '/build/reproducible-path/snakemake-7.32.4' dh_sphinxdoc -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package snakemake-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'snakemake-doc' in '../snakemake-doc_7.32.4-6_all.deb'. dpkg-deb: building package 'snakemake' in '../snakemake_7.32.4-6_all.deb'. dpkg-genbuildinfo --build=binary -O../snakemake_7.32.4-6_amd64.buildinfo dpkg-genchanges --build=binary -O../snakemake_7.32.4-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem W: Stray processes left from build: * system-pbuilder-build-snakemake_7.32.4\x2d6-4161091.slice - Slice /system/pbuilder/build/snakemake_7.32.4-6/4161091 Loaded: loaded Active: active since Mon 2024-11-11 21:21:31 -12; 49min ago Tasks: 1 Memory: 1.6G CPU: 10min 49.736s CGroup: /system.slice/system-pbuilder.slice/system-pbuilder-build.slice/system-pbuilder-build-snakemake_7.32.4\x2d6.slice/system-pbuilder-build-snakemake_7.32.4\x2d6-4161091.slice `-run-ra4f0862176464d168bd18701fbc3083c.scope `-153942 /usr/bin/bash -c "set -euo pipefail; grep 1 < test.1.txt > test.1.out" Nov 11 21:21:31 ionos11-amd64 systemd[1]: Created slice system-pbuilder-build-snakemake_7.32.4\x2d6-4161091.slice - Slice /system/pbuilder/build/snakemake_7.32.4-6/4161091. I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4161091 and its subdirectories I: Current time: Mon Nov 11 22:10:46 -12 2024 I: pbuilder-time-stamp: 1731406246 Tue Nov 12 10:10:48 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Tue Nov 12 10:10:48 UTC 2024 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Tue Nov 12 10:33:50 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Tue Nov 12 10:33:51 UTC 2024 I: snakemake_7.32.4-6_amd64.changes: Format: 1.8 Date: Fri, 04 Oct 2024 19:09:12 +0100 Source: snakemake Binary: snakemake snakemake-doc Architecture: all Version: 7.32.4-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Rebecca N. Palmer Description: snakemake - pythonic workflow management system snakemake-doc - documentation for pythonic workflow management system Closes: 1083775 Changes: snakemake (7.32.4-6) unstable; urgency=medium . * Stop using pkg_resources. (Closes: #1083775) Checksums-Sha1: 23610f1abf152492909222bdab1b87346d769a7b 4979920 snakemake-doc_7.32.4-6_all.deb 965534404f6934c80240361ac3f754371cc60db4 317744 snakemake_7.32.4-6_all.deb 0795bcf494568f25b4cd91f6634d80f9cd0f7d2b 16879 snakemake_7.32.4-6_amd64.buildinfo Checksums-Sha256: 2b9a16e8303101b1d9b49b17a022b53f1ab89ba6e7d4ae92e85d1209645916f6 4979920 snakemake-doc_7.32.4-6_all.deb 8a757bd458eaff5a08c2fba9fa5ae45d0691d91641f347dfc6b76e2b93cffd88 317744 snakemake_7.32.4-6_all.deb 6da7e8841238993737b9445461bc82288adb37cdd6768203218134b48c18a6c9 16879 snakemake_7.32.4-6_amd64.buildinfo Files: 7b1d10e048dfe770fa07dcda99f3243e 4979920 doc optional snakemake-doc_7.32.4-6_all.deb bf3932e6f77cb26279f53b0a8e90da1d 317744 science optional snakemake_7.32.4-6_all.deb 64ad3e356579e4b76e0ff2e43ebcbdbb 16879 science optional snakemake_7.32.4-6_amd64.buildinfo Tue Nov 12 10:33:52 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_15-37571.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.11BrtHsZ/snakemake_7.32.4-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.11BrtHsZ/snakemake_7.32.4-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.11BrtHsZ/snakemake_7.32.4-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.11BrtHsZ/b1/snakemake_7.32.4-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.11BrtHsZ/b2/snakemake_7.32.4-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.434s) 0.434s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.073s) 0.073s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 770ms CPU time consumed: 768ms Tue Nov 12 10:33:53 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Tue Nov 12 10:33:53 UTC 2024 I: snakemake from unstable built successfully and reproducibly on amd64. Tue Nov 12 10:33:54 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Nov 12 10:33:54 UTC 2024 I: Submitting 20K b1/snakemake_7.32.4-6_amd64.buildinfo.asc Tue Nov 12 10:33:55 UTC 2024 I: Submitting 20K b2/snakemake_7.32.4-6_amd64.buildinfo.asc Tue Nov 12 10:33:56 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Nov 12 10:33:56 UTC 2024 I: Done submitting .buildinfo files. Tue Nov 12 10:33:56 UTC 2024 I: Removing signed snakemake_7.32.4-6_amd64.buildinfo.asc files: removed './b1/snakemake_7.32.4-6_amd64.buildinfo.asc' removed './b2/snakemake_7.32.4-6_amd64.buildinfo.asc'