Thu Feb 13 09:39:16 UTC 2025  I: starting to build r-bioc-tximeta/unstable/amd64 on jenkins on '2025-02-13 09:39'
Thu Feb 13 09:39:16 UTC 2025  I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_2/31769/console.log
Thu Feb 13 09:39:16 UTC 2025  I: Downloading source for unstable/r-bioc-tximeta=1.24.0+dfsg-2
--2025-02-13 09:39:16--  http://deb.debian.org/debian/pool/main/r/r-bioc-tximeta/r-bioc-tximeta_1.24.0%2bdfsg-2.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2414 (2.4K) [text/prs.lines.tag]
Saving to: ‘r-bioc-tximeta_1.24.0+dfsg-2.dsc’

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2025-02-13 09:39:16 (368 MB/s) - ‘r-bioc-tximeta_1.24.0+dfsg-2.dsc’ saved [2414/2414]

Thu Feb 13 09:39:16 UTC 2025  I: r-bioc-tximeta_1.24.0+dfsg-2.dsc
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Format: 3.0 (quilt)
Source: r-bioc-tximeta
Binary: r-bioc-tximeta
Architecture: all
Version: 1.24.0+dfsg-2
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Michael R. Crusoe <crusoe@debian.org>
Homepage: https://bioconductor.org/packages/tximeta/
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-tximeta
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-tximeta.git
Testsuite: autopkgtest-pkg-r
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-summarizedexperiment, r-bioc-tximport, r-cran-jsonlite, r-bioc-s4vectors, r-bioc-iranges, r-bioc-genomicranges, r-bioc-annotationdbi, r-bioc-genomicfeatures, r-bioc-txdbmaker, r-bioc-ensembldb, r-bioc-biocfilecache, r-bioc-annotationhub, r-bioc-biostrings, r-cran-tibble, r-bioc-genomeinfodb, r-cran-matrix
Package-List:
 r-bioc-tximeta deb gnu-r optional arch=all
Checksums-Sha1:
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Checksums-Sha256:
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Files:
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Thu Feb 13 09:39:16 UTC 2025  I: Checking whether the package is not for us
Thu Feb 13 09:39:16 UTC 2025  I: Starting 1st build on remote node ionos5-amd64.debian.net.
Thu Feb 13 09:39:16 UTC 2025  I: Preparing to do remote build '1' on ionos5-amd64.debian.net.
Thu Feb 13 09:47:47 UTC 2025  I: Deleting $TMPDIR on ionos5-amd64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Wed Mar 18 04:02:17 -12 2026
I: pbuilder-time-stamp: 1773849737
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [r-bioc-tximeta_1.24.0+dfsg-2.dsc]
I: copying [./r-bioc-tximeta_1.24.0+dfsg.orig.tar.xz]
I: copying [./r-bioc-tximeta_1.24.0+dfsg-2.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./r-bioc-tximeta_1.24.0+dfsg-2.dsc: unsupported subcommand
dpkg-source: info: extracting r-bioc-tximeta in r-bioc-tximeta-1.24.0+dfsg
dpkg-source: info: unpacking r-bioc-tximeta_1.24.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-tximeta_1.24.0+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying skip-test-with-invalid-json.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/1572282/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='amd64'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 '
  DISTRIBUTION='unstable'
  HOME='/root'
  HOST_ARCH='amd64'
  IFS=' 	
  '
  INVOCATION_ID='6f84a3d43c8141adbf6f188e27870c33'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='1572282'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0VI5LSal/pbuilderrc_m0jf --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0VI5LSal/b1 --logfile b1/build.log r-bioc-tximeta_1.24.0+dfsg-2.dsc'
  SUDO_GID='110'
  SUDO_UID='105'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://213.165.73.152:3128'
I: uname -a
  Linux ionos5-amd64 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Nov 22  2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/1572282/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-summarizedexperiment, r-bioc-tximport, r-cran-jsonlite, r-bioc-s4vectors, r-bioc-iranges, r-bioc-genomicranges, r-bioc-annotationdbi, r-bioc-genomicfeatures, r-bioc-txdbmaker, r-bioc-ensembldb, r-bioc-biocfilecache, r-bioc-annotationhub, r-bioc-biostrings, r-cran-tibble, r-bioc-genomeinfodb, r-cran-matrix
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19808 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-r; however:
  Package dh-r is not installed.
 pbuilder-satisfydepends-dummy depends on r-base-dev; however:
  Package r-base-dev is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-summarizedexperiment; however:
  Package r-bioc-summarizedexperiment is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-tximport; however:
  Package r-bioc-tximport is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-jsonlite; however:
  Package r-cran-jsonlite is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors; however:
  Package r-bioc-s4vectors is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-iranges; however:
  Package r-bioc-iranges is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-genomicranges; however:
  Package r-bioc-genomicranges is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-annotationdbi; however:
  Package r-bioc-annotationdbi is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-genomicfeatures; however:
  Package r-bioc-genomicfeatures is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-txdbmaker; however:
  Package r-bioc-txdbmaker is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-ensembldb; however:
  Package r-bioc-ensembldb is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-biocfilecache; however:
  Package r-bioc-biocfilecache is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-annotationhub; however:
  Package r-bioc-annotationhub is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-biostrings; however:
  Package r-bioc-biostrings is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-tibble; however:
  Package r-cran-tibble is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-genomeinfodb; however:
  Package r-bioc-genomeinfodb is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-matrix; however:
  Package r-cran-matrix is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libidn2-0{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap2{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtasn1-6{a} libtcl8.6{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} node-html5shiv{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} r-base-core{a} r-base-dev{a} r-bioc-annotationdbi{a} r-bioc-annotationfilter{a} r-bioc-annotationhub{a} r-bioc-biobase{a} r-bioc-biocfilecache{a} r-bioc-biocgenerics{a} r-bioc-biocio{a} r-bioc-biocparallel{a} r-bioc-biocversion{a} r-bioc-biomart{a} r-bioc-biostrings{a} r-bioc-delayedarray{a} r-bioc-ensembldb{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicalignments{a} r-bioc-genomicfeatures{a} r-bioc-genomicranges{a} r-bioc-iranges{a} r-bioc-keggrest{a} r-bioc-matrixgenerics{a} r-bioc-protgenerics{a} r-bioc-rhtslib{a} r-bioc-rsamtools{a} r-bioc-rtracklayer{a} r-bioc-s4arrays{a} r-bioc-s4vectors{a} r-bioc-sparsearray{a} r-bioc-summarizedexperiment{a} r-bioc-txdbmaker{a} r-bioc-tximport{a} r-bioc-ucsc.utils{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-abind{a} r-cran-askpass{a} r-cran-bh{a} r-cran-biocmanager{a} r-cran-bit{a} r-cran-bit64{a} r-cran-bitops{a} r-cran-blob{a} r-cran-cachem{a} r-cran-cli{a} r-cran-codetools{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-curl{a} r-cran-dbi{a} r-cran-dbplyr{a} r-cran-digest{a} r-cran-dplyr{a} r-cran-fansi{a} r-cran-fastmap{a} r-cran-filelock{a} r-cran-formatr{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-generics{a} r-cran-glue{a} r-cran-hms{a} r-cran-httr{a} r-cran-httr2{a} r-cran-jsonlite{a} r-cran-lambda.r{a} r-cran-lattice{a} r-cran-lazyeval{a} r-cran-lifecycle{a} r-cran-magrittr{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-memoise{a} r-cran-mime{a} r-cran-openssl{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-plogr{a} r-cran-png{a} r-cran-prettyunits{a} r-cran-progress{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcurl{a} r-cran-restfulr{a} r-cran-rjson{a} r-cran-rlang{a} r-cran-rsqlite{a} r-cran-snow{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-sys{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-withr{a} r-cran-xml{a} r-cran-xml2{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  bzip2-doc cme curl devscripts git-buildpackage javascript-common krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-bioc-biocstyle r-cran-base64enc r-cran-bench r-cran-brio r-cran-broom r-cran-callr r-cran-clipr r-cran-covr r-cran-data.table r-cran-dbitest r-cran-decor r-cran-desc r-cran-diagrammer r-cran-docopt r-cran-evaluate r-cran-ff r-cran-formattable r-cran-fs r-cran-gert r-cran-ggplot2 r-cran-gh r-cran-here r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-jpeg r-cran-knitr r-cran-later r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-markdown r-cran-microbenchmark r-cran-mockery r-cran-nanotime r-cran-palmerpenguins r-cran-pkgbuild r-cran-pkgdown r-cran-pkgload r-cran-processx r-cran-promises r-cran-ps r-cran-r.devices r-cran-r.rsp r-cran-rcpp r-cran-readr r-cran-remotes r-cran-rmariadb r-cran-rmarkdown r-cran-rmysql r-cran-roxygen2 r-cran-rpostgresql r-cran-rprojroot r-cran-rstudioapi r-cran-runit r-cran-rvest r-cran-scales r-cran-sf r-cran-shiny r-cran-sodium r-cran-spelling r-cran-survival r-cran-testit r-cran-testthat r-cran-tidyverse r-cran-unitizer r-cran-units r-cran-usethis r-cran-vdiffr r-cran-waldo r-cran-webfakes r-cran-webutils r-cran-whoami r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 
0 packages upgraded, 300 newly installed, 0 to remove and 0 not upgraded.
Need to get 219 MB of archives. After unpacking 654 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025a-2 [259 kB]
Get: 2 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB]
Get: 3 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-7 [878 kB]
Get: 4 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB]
Get: 5 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get: 6 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.4.1-1 [1427 kB]
Get: 7 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20241223 [164 kB]
Get: 8 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB]
Get: 9 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB]
Get: 10 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB]
Get: 11 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB]
Get: 12 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get: 13 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB]
Get: 14 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-3 [92.1 kB]
Get: 15 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get: 16 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB]
Get: 17 http://deb.debian.org/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B]
Get: 18 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B]
Get: 19 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0049 [42.5 kB]
Get: 20 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB]
Get: 21 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB]
Get: 22 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 23 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-3 [862 kB]
Get: 24 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB]
Get: 25 http://deb.debian.org/debian unstable/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB]
Get: 26 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 27 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-3 [539 kB]
Get: 28 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 29 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 30 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 31 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 32 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get: 33 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get: 34 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB]
Get: 35 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB]
Get: 36 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB]
Get: 37 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB]
Get: 38 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 39 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 40 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB]
Get: 41 http://deb.debian.org/debian unstable/main amd64 zip amd64 3.0-14 [233 kB]
Get: 42 http://deb.debian.org/debian unstable/main amd64 unzip amd64 6.0-28 [166 kB]
Get: 43 http://deb.debian.org/debian unstable/main amd64 libpaper2 amd64 2.2.5-0.3+b1 [16.6 kB]
Get: 44 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 2.2.5-0.3+b1 [16.4 kB]
Get: 45 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.2.1-2 [75.8 kB]
Get: 46 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-2 [160 kB]
Get: 47 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB]
Get: 48 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB]
Get: 49 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.46-4 [284 kB]
Get: 50 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB]
Get: 51 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 52 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 53 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2 [317 kB]
Get: 54 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2 [391 kB]
Get: 55 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB]
Get: 56 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB]
Get: 57 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB]
Get: 58 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB]
Get: 59 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB]
Get: 60 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB]
Get: 61 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB]
Get: 62 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB]
Get: 63 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB]
Get: 64 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b4 [27.8 kB]
Get: 65 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.2-2 [535 kB]
Get: 66 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB]
Get: 67 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB]
Get: 68 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB]
Get: 69 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B]
Get: 70 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB]
Get: 71 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB]
Get: 72 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB]
Get: 73 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB]
Get: 74 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB]
Get: 75 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB]
Get: 76 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB]
Get: 77 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB]
Get: 78 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB]
Get: 79 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB]
Get: 80 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-1 [49.9 kB]
Get: 81 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB]
Get: 82 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB]
Get: 83 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB]
Get: 84 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.12.0+git20250209.89ed161+ds-1 [355 kB]
Get: 85 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB]
Get: 86 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.83.3-2 [1511 kB]
Get: 87 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB]
Get: 88 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-17 [836 kB]
Get: 89 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB]
Get: 90 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-2 [463 kB]
Get: 91 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB]
Get: 92 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB]
Get: 93 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 10.2.0-1 [479 kB]
Get: 94 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB]
Get: 95 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB]
Get: 96 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB]
Get: 97 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.56.1-1 [226 kB]
Get: 98 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.56.1-1 [55.3 kB]
Get: 99 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.56.1-1 [35.8 kB]
Get: 100 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB]
Get: 101 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB]
Get: 102 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB]
Get: 103 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB]
Get: 104 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB]
Get: 105 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB]
Get: 106 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB]
Get: 107 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get: 108 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB]
Get: 109 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB]
Get: 110 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+24 [217 kB]
Get: 111 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB]
Get: 112 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB]
Get: 113 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB]
Get: 114 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB]
Get: 115 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b2 [188 kB]
Get: 116 http://deb.debian.org/debian unstable/main amd64 r-base-core amd64 4.4.2-1 [28.3 MB]
Get: 117 http://deb.debian.org/debian unstable/main amd64 libgfortran-14-dev amd64 14.2.0-17 [879 kB]
Get: 118 http://deb.debian.org/debian unstable/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17 [11.7 MB]
Get: 119 http://deb.debian.org/debian unstable/main amd64 gfortran-14 amd64 14.2.0-17 [14.0 kB]
Get: 120 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B]
Get: 121 http://deb.debian.org/debian unstable/main amd64 gfortran amd64 4:14.2.0-1 [1436 B]
Get: 122 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.1-2 [170 kB]
Get: 123 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.1-2 [4998 kB]
Get: 124 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.5+20250125-2 [105 kB]
Get: 125 http://deb.debian.org/debian unstable/main amd64 libncurses-dev amd64 6.5+20250125-2 [353 kB]
Get: 126 http://deb.debian.org/debian unstable/main amd64 libreadline-dev amd64 8.2-6 [153 kB]
Get: 127 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3+b1 [292 kB]
Get: 128 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-3+b1 [72.2 kB]
Get: 129 http://deb.debian.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.45-1 [281 kB]
Get: 130 http://deb.debian.org/debian unstable/main amd64 libpcre2-32-0 amd64 10.45-1 [268 kB]
Get: 131 http://deb.debian.org/debian unstable/main amd64 libpcre2-posix3 amd64 10.45-1 [63.5 kB]
Get: 132 http://deb.debian.org/debian unstable/main amd64 libpcre2-dev amd64 10.45-1 [853 kB]
Get: 133 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB]
Get: 134 http://deb.debian.org/debian unstable/main amd64 libpng-dev amd64 1.6.46-4 [370 kB]
Get: 135 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB]
Get: 136 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.6.3-1+b1 [316 kB]
Get: 137 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 72.1-6 [210 kB]
Get: 138 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 72.1-6 [10.4 MB]
Get: 139 http://deb.debian.org/debian unstable/main amd64 libxmuu1 amd64 2:1.1.3-3+b4 [21.9 kB]
Get: 140 http://deb.debian.org/debian unstable/main amd64 xauth amd64 1:1.1.2-1.1 [35.9 kB]
Get: 141 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB]
Get: 142 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB]
Get: 143 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB]
Get: 144 http://deb.debian.org/debian unstable/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3+b1 [190 kB]
Get: 145 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.23-1+b1 [56.0 kB]
Get: 146 http://deb.debian.org/debian unstable/main amd64 r-base-dev all 4.4.2-1 [4516 B]
Get: 147 http://deb.debian.org/debian unstable/main amd64 libfile-which-perl all 1.27-2 [15.1 kB]
Get: 148 http://deb.debian.org/debian unstable/main amd64 libswitch-perl all 2.17-3 [20.3 kB]
Get: 149 http://deb.debian.org/debian unstable/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB]
Get: 150 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB]
Get: 151 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get: 152 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB]
Get: 153 http://deb.debian.org/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB]
Get: 154 http://deb.debian.org/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get: 155 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.30-1 [105 kB]
Get: 156 http://deb.debian.org/debian unstable/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB]
Get: 157 http://deb.debian.org/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB]
Get: 158 http://deb.debian.org/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB]
Get: 159 http://deb.debian.org/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB]
Get: 160 http://deb.debian.org/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB]
Get: 161 http://deb.debian.org/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-1 [12.1 kB]
Get: 162 http://deb.debian.org/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-1+b1 [16.2 kB]
Get: 163 http://deb.debian.org/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB]
Get: 164 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get: 165 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB]
Get: 166 http://deb.debian.org/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get: 167 http://deb.debian.org/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB]
Get: 168 http://deb.debian.org/debian unstable/main amd64 libclass-load-perl all 0.25-2 [15.3 kB]
Get: 169 http://deb.debian.org/debian unstable/main amd64 libclass-load-xs-perl amd64 0.10-2+b4 [14.2 kB]
Get: 170 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get: 171 http://deb.debian.org/debian unstable/main amd64 libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get: 172 http://deb.debian.org/debian unstable/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get: 173 http://deb.debian.org/debian unstable/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB]
Get: 174 http://deb.debian.org/debian unstable/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB]
Get: 175 http://deb.debian.org/debian unstable/main amd64 libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get: 176 http://deb.debian.org/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB]
Get: 177 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB]
Get: 178 http://deb.debian.org/debian unstable/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB]
Get: 179 http://deb.debian.org/debian unstable/main amd64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get: 180 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get: 181 http://deb.debian.org/debian unstable/main amd64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get: 182 http://deb.debian.org/debian unstable/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b4 [20.9 kB]
Get: 183 http://deb.debian.org/debian unstable/main amd64 libmoose-perl amd64 2.2207-1+b3 [766 kB]
Get: 184 http://deb.debian.org/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB]
Get: 185 http://deb.debian.org/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB]
Get: 186 http://deb.debian.org/debian unstable/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB]
Get: 187 http://deb.debian.org/debian unstable/main amd64 libsub-name-perl amd64 0.28-1 [12.2 kB]
Get: 188 http://deb.debian.org/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get: 189 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB]
Get: 190 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB]
Get: 191 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB]
Get: 192 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.12.0+git20250209.89ed161+ds-1 [365 kB]
Get: 193 http://deb.debian.org/debian unstable/main amd64 libwww-curl-perl amd64 4.17-11 [57.9 kB]
Get: 194 http://deb.debian.org/debian unstable/main amd64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get: 195 http://deb.debian.org/debian unstable/main amd64 dh-r all 20241218 [42.5 kB]
Get: 196 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-4 [10.6 MB]
Get: 197 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B]
Get: 198 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 199 http://deb.debian.org/debian unstable/main amd64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB]
Get: 200 http://deb.debian.org/debian unstable/main amd64 r-bioc-biocgenerics all 0.52.0-2 [627 kB]
Get: 201 http://deb.debian.org/debian unstable/main amd64 r-bioc-biobase amd64 2.66.0-2 [2316 kB]
Get: 202 http://deb.debian.org/debian unstable/main amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2061 kB]
Get: 203 http://deb.debian.org/debian unstable/main amd64 r-bioc-iranges amd64 2.40.1-2 [2309 kB]
Get: 204 http://deb.debian.org/debian unstable/main amd64 r-cran-dbi all 1.2.3-1 [852 kB]
Get: 205 http://deb.debian.org/debian unstable/main amd64 r-cran-bit amd64 4.5.0.1-1 [1113 kB]
Get: 206 http://deb.debian.org/debian unstable/main amd64 r-cran-bit64 amd64 4.0.5-1 [463 kB]
Get: 207 http://deb.debian.org/debian unstable/main amd64 r-cran-rlang amd64 1.1.5-1 [1712 kB]
Get: 208 http://deb.debian.org/debian unstable/main amd64 r-cran-cli amd64 3.6.3-1 [1342 kB]
Get: 209 http://deb.debian.org/debian unstable/main amd64 r-cran-glue amd64 1.8.0-1 [165 kB]
Get: 210 http://deb.debian.org/debian unstable/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
Get: 211 http://deb.debian.org/debian unstable/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB]
Get: 212 http://deb.debian.org/debian unstable/main amd64 r-cran-blob all 1.2.4-1 [49.6 kB]
Get: 213 http://deb.debian.org/debian unstable/main amd64 r-cran-fastmap amd64 1.2.0-1 [72.2 kB]
Get: 214 http://deb.debian.org/debian unstable/main amd64 r-cran-cachem amd64 1.1.0-1 [73.9 kB]
Get: 215 http://deb.debian.org/debian unstable/main amd64 r-cran-memoise all 2.0.1-1 [53.8 kB]
Get: 216 http://deb.debian.org/debian unstable/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get: 217 http://deb.debian.org/debian unstable/main amd64 r-cran-plogr all 0.2.0-3 [14.9 kB]
Get: 218 http://deb.debian.org/debian unstable/main amd64 r-cran-cpp11 all 0.5.1-1 [225 kB]
Get: 219 http://deb.debian.org/debian unstable/main amd64 r-cran-rsqlite amd64 2.3.9-1 [1216 kB]
Get: 220 http://deb.debian.org/debian unstable/main amd64 r-cran-curl amd64 6.1.0+dfsg-1 [193 kB]
Get: 221 http://deb.debian.org/debian unstable/main amd64 r-cran-jsonlite amd64 1.8.9+dfsg-1 [445 kB]
Get: 222 http://deb.debian.org/debian unstable/main amd64 r-cran-mime amd64 0.12-2 [35.6 kB]
Get: 223 http://deb.debian.org/debian unstable/main amd64 r-cran-sys amd64 3.4.3-1 [44.4 kB]
Get: 224 http://deb.debian.org/debian unstable/main amd64 r-cran-askpass amd64 1.2.1-1 [24.2 kB]
Get: 225 http://deb.debian.org/debian unstable/main amd64 r-cran-openssl amd64 2.2.0+dfsg-1 [401 kB]
Get: 226 http://deb.debian.org/debian unstable/main amd64 r-cran-r6 all 2.5.1-1 [105 kB]
Get: 227 http://deb.debian.org/debian unstable/main amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
Get: 228 http://deb.debian.org/debian unstable/main amd64 r-cran-png amd64 0.1-8-1+b1 [41.5 kB]
Get: 229 http://deb.debian.org/debian unstable/main amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [9968 B]
Get: 230 http://deb.debian.org/debian unstable/main amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB]
Get: 231 http://deb.debian.org/debian unstable/main amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.3 kB]
Get: 232 http://deb.debian.org/debian unstable/main amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB]
Get: 233 http://deb.debian.org/debian unstable/main amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3848 kB]
Get: 234 http://deb.debian.org/debian unstable/main amd64 r-cran-crayon all 1.5.3-1 [165 kB]
Get: 235 http://deb.debian.org/debian unstable/main amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.4 MB]
Get: 236 http://deb.debian.org/debian unstable/main amd64 r-bioc-keggrest all 1.46.0+dfsg-2 [184 kB]
Get: 237 http://deb.debian.org/debian unstable/main amd64 r-bioc-annotationdbi all 1.68.0-2 [4703 kB]
Get: 238 http://deb.debian.org/debian unstable/main amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2092 kB]
Get: 239 http://deb.debian.org/debian unstable/main amd64 r-cran-lazyeval amd64 0.2.2-1+b1 [142 kB]
Get: 240 http://deb.debian.org/debian unstable/main amd64 r-bioc-annotationfilter all 1.30.0+dfsg-2 [246 kB]
Get: 241 http://deb.debian.org/debian unstable/main amd64 r-cran-generics all 0.1.3-1 [81.4 kB]
Get: 242 http://deb.debian.org/debian unstable/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB]
Get: 243 http://deb.debian.org/debian unstable/main amd64 r-cran-utf8 amd64 1.2.4-1 [133 kB]
Get: 244 http://deb.debian.org/debian unstable/main amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB]
Get: 245 http://deb.debian.org/debian unstable/main amd64 r-cran-fansi amd64 1.0.5-1 [621 kB]
Get: 246 http://deb.debian.org/debian unstable/main amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [425 kB]
Get: 247 http://deb.debian.org/debian unstable/main amd64 r-cran-withr all 3.0.2+dfsg-1 [226 kB]
Get: 248 http://deb.debian.org/debian unstable/main amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [223 kB]
Get: 249 http://deb.debian.org/debian unstable/main amd64 r-cran-dplyr amd64 1.1.4-4 [1543 kB]
Get: 250 http://deb.debian.org/debian unstable/main amd64 r-cran-purrr amd64 1.0.2-1 [507 kB]
Get: 251 http://deb.debian.org/debian unstable/main amd64 r-cran-stringi amd64 1.8.4-1 [895 kB]
Get: 252 http://deb.debian.org/debian unstable/main amd64 r-cran-stringr all 1.5.1-1 [296 kB]
Get: 253 http://deb.debian.org/debian unstable/main amd64 r-cran-tidyr amd64 1.3.1-1 [1163 kB]
Get: 254 http://deb.debian.org/debian unstable/main amd64 r-cran-dbplyr all 2.5.0+dfsg-1 [1247 kB]
Get: 255 http://deb.debian.org/debian unstable/main amd64 r-cran-filelock amd64 1.0.3-1 [27.3 kB]
Get: 256 http://deb.debian.org/debian unstable/main amd64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [302 kB]
Get: 257 http://deb.debian.org/debian unstable/main amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
Get: 258 http://deb.debian.org/debian unstable/main amd64 r-bioc-biocversion all 3.20.0-2 [11.0 kB]
Get: 259 http://deb.debian.org/debian unstable/main amd64 r-cran-rappdirs amd64 0.3.3-1 [47.4 kB]
Get: 260 http://deb.debian.org/debian unstable/main amd64 r-cran-yaml amd64 2.3.10-1 [108 kB]
Get: 261 http://deb.debian.org/debian unstable/main amd64 r-bioc-annotationhub all 3.14.0+dfsg-2 [447 kB]
Get: 262 http://deb.debian.org/debian unstable/main amd64 r-bioc-biocio all 1.16.0+dfsg-2 [210 kB]
Get: 263 http://deb.debian.org/debian unstable/main amd64 r-cran-formatr all 1.14-2 [152 kB]
Get: 264 http://deb.debian.org/debian unstable/main amd64 r-cran-lambda.r all 1.2.4-2 [118 kB]
Get: 265 http://deb.debian.org/debian unstable/main amd64 r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get: 266 http://deb.debian.org/debian unstable/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get: 267 http://deb.debian.org/debian unstable/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB]
Get: 268 http://deb.debian.org/debian unstable/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB]
Get: 269 http://deb.debian.org/debian unstable/main amd64 r-cran-bh all 1.84.0-1 [5912 B]
Get: 270 http://deb.debian.org/debian unstable/main amd64 r-bioc-biocparallel amd64 1.40.0-2 [1326 kB]
Get: 271 http://deb.debian.org/debian unstable/main amd64 r-cran-hms all 1.1.3-1 [104 kB]
Get: 272 http://deb.debian.org/debian unstable/main amd64 r-cran-prettyunits all 1.2.0-1 [162 kB]
Get: 273 http://deb.debian.org/debian unstable/main amd64 r-cran-progress all 1.2.3-1 [93.0 kB]
Get: 274 http://deb.debian.org/debian unstable/main amd64 r-cran-httr2 all 1.1.0-1 [722 kB]
Get: 275 http://deb.debian.org/debian unstable/main amd64 r-cran-digest amd64 0.6.37-1 [206 kB]
Get: 276 http://deb.debian.org/debian unstable/main amd64 r-cran-xml2 amd64 1.3.6-1 [320 kB]
Get: 277 http://deb.debian.org/debian unstable/main amd64 r-bioc-biomart all 2.62.1+dfsg-1 [461 kB]
Get: 278 http://deb.debian.org/debian unstable/main amd64 r-cran-lattice amd64 0.22-6-1 [1392 kB]
Get: 279 http://deb.debian.org/debian unstable/main amd64 r-cran-matrix amd64 1.7-2-1 [4155 kB]
Get: 280 http://deb.debian.org/debian unstable/main amd64 r-cran-matrixstats amd64 1.5.0-1 [502 kB]
Get: 281 http://deb.debian.org/debian unstable/main amd64 r-bioc-matrixgenerics all 1.18.1-1 [449 kB]
Get: 282 http://deb.debian.org/debian unstable/main amd64 r-cran-abind all 1.4-8-1 [68.1 kB]
Get: 283 http://deb.debian.org/debian unstable/main amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [702 kB]
Get: 284 http://deb.debian.org/debian unstable/main amd64 r-bioc-sparsearray amd64 1.6.1+dfsg-1 [1371 kB]
Get: 285 http://deb.debian.org/debian unstable/main amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2076 kB]
Get: 286 http://deb.debian.org/debian unstable/main amd64 r-cran-xml amd64 3.99-0.18-1 [1762 kB]
Get: 287 http://deb.debian.org/debian unstable/main amd64 r-cran-bitops amd64 1.0-9-1 [30.7 kB]
Get: 288 http://deb.debian.org/debian unstable/main amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1335 kB]
Get: 289 http://deb.debian.org/debian unstable/main amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3600 kB]
Get: 290 http://deb.debian.org/debian unstable/main amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1116 kB]
Get: 291 http://deb.debian.org/debian unstable/main amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2161 kB]
Get: 292 http://deb.debian.org/debian unstable/main amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [799 kB]
Get: 293 http://deb.debian.org/debian unstable/main amd64 r-cran-rjson amd64 0.2.23-1 [100.0 kB]
Get: 294 http://deb.debian.org/debian unstable/main amd64 r-cran-restfulr amd64 0.0.15-1 [382 kB]
Get: 295 http://deb.debian.org/debian unstable/main amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5213 kB]
Get: 296 http://deb.debian.org/debian unstable/main amd64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [930 kB]
Get: 297 http://deb.debian.org/debian unstable/main amd64 r-bioc-protgenerics all 1.38.0-2 [239 kB]
Get: 298 http://deb.debian.org/debian unstable/main amd64 r-bioc-ensembldb all 2.30.0+dfsg-3 [1510 kB]
Get: 299 http://deb.debian.org/debian unstable/main amd64 r-bioc-txdbmaker all 1.2.1+ds-2 [741 kB]
Get: 300 http://deb.debian.org/debian unstable/main amd64 r-bioc-tximport all 1.34.0+dfsg-2 [91.2 kB]
Fetched 219 MB in 21s (10.4 MB/s)
Preconfiguring packages ...
Selecting previously unselected package tzdata.
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(Reading database ... 19808 files and directories currently installed.)
Preparing to unpack .../000-tzdata_2025a-2_all.deb ...
Unpacking tzdata (2025a-2) ...
Selecting previously unselected package libproc2-0:amd64.
Preparing to unpack .../001-libproc2-0_2%3a4.0.4-7_amd64.deb ...
Unpacking libproc2-0:amd64 (2:4.0.4-7) ...
Selecting previously unselected package procps.
Preparing to unpack .../002-procps_2%3a4.0.4-7_amd64.deb ...
Unpacking procps (2:4.0.4-7) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../003-readline-common_8.2-6_all.deb ...
Unpacking readline-common (8.2-6) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../004-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package openssl.
Preparing to unpack .../005-openssl_3.4.1-1_amd64.deb ...
Unpacking openssl (3.4.1-1) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../006-ca-certificates_20241223_all.deb ...
Unpacking ca-certificates (20241223) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../007-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ...
Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:amd64.
Preparing to unpack .../008-libmagic1t64_1%3a5.45-3+b1_amd64.deb ...
Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ...
Selecting previously unselected package file.
Preparing to unpack .../009-file_1%3a5.45-3+b1_amd64.deb ...
Unpacking file (1:5.45-3+b1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../010-gettext-base_0.23.1-1_amd64.deb ...
Unpacking gettext-base (0.23.1-1) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../011-libuchardet0_0.0.8-1+b2_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.8-1+b2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../012-groff-base_1.23.0-7_amd64.deb ...
Unpacking groff-base (1.23.0-7) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../013-bsdextrautils_2.40.4-3_amd64.deb ...
Unpacking bsdextrautils (2.40.4-3) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../014-libpipeline1_1.5.8-1_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.8-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../015-man-db_2.13.0-1_amd64.deb ...
Unpacking man-db (2.13.0-1) ...
Selecting previously unselected package libtext-charwidth-perl:amd64.
Preparing to unpack .../016-libtext-charwidth-perl_0.04-11+b4_amd64.deb ...
Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ...
Selecting previously unselected package libtext-wrapi18n-perl.
Preparing to unpack .../017-libtext-wrapi18n-perl_0.06-10_all.deb ...
Unpacking libtext-wrapi18n-perl (0.06-10) ...
Selecting previously unselected package ucf.
Preparing to unpack .../018-ucf_3.0049_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0049) ...
Selecting previously unselected package m4.
Preparing to unpack .../019-m4_1.4.19-5_amd64.deb ...
Unpacking m4 (1.4.19-5) ...
Selecting previously unselected package autoconf.
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Unpacking autoconf (2.72-3) ...
Selecting previously unselected package autotools-dev.
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Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../022-automake_1%3a1.17-3_all.deb ...
Unpacking automake (1:1.17-3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../023-autopoint_0.23.1-1_all.deb ...
Unpacking autopoint (0.23.1-1) ...
Selecting previously unselected package dctrl-tools.
Preparing to unpack .../024-dctrl-tools_2.24-3+b1_amd64.deb ...
Unpacking dctrl-tools (2.24-3+b1) ...
Selecting previously unselected package libdebhelper-perl.
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Unpacking libdebhelper-perl (13.24.1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../026-libtool_2.5.4-3_all.deb ...
Unpacking libtool (2.5.4-3) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../027-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../028-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../029-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../030-dh-strip-nondeterminism_1.14.1-2_all.deb ...
Unpacking dh-strip-nondeterminism (1.14.1-2) ...
Selecting previously unselected package libelf1t64:amd64.
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Unpacking libelf1t64:amd64 (0.192-4) ...
Selecting previously unselected package dwz.
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Unpacking dwz (0.15-1+b1) ...
Selecting previously unselected package libunistring5:amd64.
Preparing to unpack .../033-libunistring5_1.3-1_amd64.deb ...
Unpacking libunistring5:amd64 (1.3-1) ...
Selecting previously unselected package libicu72:amd64.
Preparing to unpack .../034-libicu72_72.1-6_amd64.deb ...
Unpacking libicu72:amd64 (72.1-6) ...
Selecting previously unselected package libxml2:amd64.
Preparing to unpack .../035-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ...
Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../036-gettext_0.23.1-1_amd64.deb ...
Unpacking gettext (0.23.1-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../037-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
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Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
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Unpacking debhelper (13.24.1) ...
Selecting previously unselected package zip.
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Unpacking zip (3.0-14) ...
Selecting previously unselected package unzip.
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Setting up r-cran-plogr (0.2.0-3) ...
Setting up r-cran-withr (3.0.2+dfsg-1) ...
Setting up r-cran-mime (0.12-2) ...
Setting up libmoose-perl:amd64 (2.2207-1+b3) ...
Setting up r-cran-generics (0.1.3-1) ...
Setting up r-cran-abind (1.4-8-1) ...
Setting up r-cran-digest (0.6.37-1) ...
Setting up r-cran-yaml (2.3.10-1) ...
Setting up r-cran-lambda.r (1.2.4-2) ...
Setting up r-bioc-protgenerics (1.38.0-2) ...
Setting up r-cran-dbi (1.2.3-1) ...
Setting up r-cran-prettyunits (1.2.0-1) ...
Setting up r-cran-fansi (1.0.5-1) ...
Setting up r-cran-snow (1:0.4.4-2) ...
Setting up r-cran-glue (1.8.0-1) ...
Setting up r-cran-bit (4.5.0.1-1) ...
Setting up r-cran-cli (3.6.3-1) ...
Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
Setting up r-cran-bitops (1.0-9-1) ...
Setting up r-bioc-biocversion (3.20.0-2) ...
Setting up r-cran-bit64 (4.0.5-1) ...
Setting up r-cran-biocmanager (1.30.25+dfsg-1) ...
Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
Setting up r-cran-askpass (1.2.1-1) ...
Setting up r-cran-fastmap (1.2.0-1) ...
Setting up r-cran-png (0.1-8-1+b1) ...
Setting up r-bioc-biobase (2.66.0-2) ...
Setting up r-cran-jsonlite (1.8.9+dfsg-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-utf8 (1.2.4-1) ...
Setting up r-cran-stringi (1.8.4-1) ...
Setting up r-cran-cpp11 (0.5.1-1) ...
Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up r-cran-matrix (1.7-2-1) ...
Setting up r-bioc-tximport (1.34.0+dfsg-2) ...
Setting up r-cran-cachem (1.1.0-1) ...
Setting up r-bioc-iranges (2.40.1-2) ...
Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ...
Setting up r-cran-restfulr (0.0.15-1) ...
Setting up r-cran-vctrs (0.6.5-1) ...
Setting up r-cran-pillar (1.10.1+dfsg-1) ...
Setting up r-cran-openssl (2.2.0+dfsg-1) ...
Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ...
Setting up r-cran-stringr (1.5.1-1) ...
Setting up r-bioc-biocparallel (1.40.0-2) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ...
Setting up r-cran-xml2 (1.3.6-1) ...
Setting up r-cran-tibble (3.2.1+dfsg-3) ...
Setting up r-bioc-biocio (1.16.0+dfsg-2) ...
Setting up r-cran-tidyselect (1.2.1+dfsg-1) ...
Setting up r-cran-httr2 (1.1.0-1) ...
Setting up r-cran-httr (1.4.7+dfsg-1) ...
Setting up r-cran-hms (1.1.3-1) ...
Setting up r-cran-memoise (2.0.1-1) ...
Setting up r-cran-purrr (1.0.2-1) ...
Setting up r-cran-blob (1.2.4-1) ...
Setting up r-bioc-xvector (0.46.0-2) ...
Setting up r-cran-dplyr (1.1.4-4) ...
Setting up dh-r (20241218) ...
Setting up r-cran-rsqlite (2.3.9-1) ...
Setting up r-cran-progress (1.2.3-1) ...
Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ...
Setting up r-bioc-sparsearray (1.6.1+dfsg-1) ...
Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
Setting up r-cran-tidyr (1.3.1-1) ...
Setting up r-cran-dbplyr (2.5.0+dfsg-1) ...
Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ...
Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ...
Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ...
Setting up r-bioc-biostrings (2.74.1+dfsg-2) ...
Setting up r-bioc-annotationfilter (1.30.0+dfsg-2) ...
Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ...
Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
Setting up r-bioc-keggrest (1.46.0+dfsg-2) ...
Setting up r-bioc-annotationdbi (1.68.0-2) ...
Setting up r-bioc-annotationhub (3.14.0+dfsg-2) ...
Setting up r-bioc-biomart (2.62.1+dfsg-1) ...
Setting up r-bioc-genomicalignments (1.42.0-2) ...
Setting up r-bioc-rtracklayer (1.66.0-2) ...
Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ...
Setting up r-bioc-txdbmaker (1.2.1+ds-2) ...
Setting up r-bioc-ensembldb (2.30.0+dfsg-3) ...
Processing triggers for libc-bin (2.40-6) ...
Processing triggers for ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/r-bioc-tximeta-1.24.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../r-bioc-tximeta_1.24.0+dfsg-2_source.changes
dpkg-buildpackage: info: source package r-bioc-tximeta
dpkg-buildpackage: info: source version 1.24.0+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Michael R. Crusoe <crusoe@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh clean --buildsystem R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules binary
dh binary --buildsystem R
   dh_update_autotools_config -O--buildsystem=R
   dh_autoreconf -O--buildsystem=R
   dh_auto_configure -O--buildsystem=R
   dh_auto_build -O--buildsystem=R
   dh_auto_test -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=R
   dh_prep -O--buildsystem=R
   dh_auto_install --destdir=debian/r-bioc-tximeta/ -O--buildsystem=R
I: R Package: tximeta Version: 1.24.0
I: Building using R version 4.4.2-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Tue, 14 Jan 2025 09:11:40 +0100
	mkdir -p /build/reproducible-path/r-bioc-tximeta-1.24.0\+dfsg/debian/r-bioc-tximeta/usr/lib/R/site-library
	R CMD INSTALL -l /build/reproducible-path/r-bioc-tximeta-1.24.0\+dfsg/debian/r-bioc-tximeta/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 14 Jan 2025 09:11:40 +0100'"
* installing *source* package 'tximeta' ...
file 'inst/doc/tximeta.html' is missing
file 'tests/testthat/test_tximeta.R' has the wrong MD5 checksum
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tximeta)
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
I: Using r-cran-testthat for Suggests:testthat
I: Using r-bioc-tximportdata for Suggests:tximportData
W: Cannot find a debian package for Suggests:org.Dm.eg.db
I: Using r-bioc-deseq2 for Suggests:DESeq2
I: Using r-bioc-fishpond for Suggests:fishpond
I: Using r-bioc-edger for Suggests:edgeR
I: Using r-bioc-limma for Suggests:limma
I: Using r-cran-devtools for Suggests:devtools
I: Using r-bioc-summarizedexperiment for Imports:SummarizedExperiment
I: Using r-bioc-tximport for Imports:tximport
I: Using r-cran-jsonlite for Imports:jsonlite
I: Using r-bioc-s4vectors for Imports:S4Vectors
I: Using r-bioc-iranges for Imports:IRanges
I: Using r-bioc-genomicranges for Imports:GenomicRanges
I: Using r-bioc-annotationdbi for Imports:AnnotationDbi
I: Using r-bioc-genomicfeatures for Imports:GenomicFeatures
I: Using r-bioc-txdbmaker for Imports:txdbmaker
I: Using r-bioc-ensembldb for Imports:ensembldb
I: Using r-bioc-biocfilecache for Imports:BiocFileCache
I: Using r-bioc-annotationhub for Imports:AnnotationHub
I: Using r-bioc-biostrings for Imports:Biostrings
I: Using r-cran-tibble for Imports:tibble
I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb
I: Using r-cran-matrix by changing version to  for Imports:Matrix
I: BioConductor API version: r-api-bioc-3.20
I: Use r-bioc-tximeta as Debian binary package for variables substitution
   dh_installdocs -O--buildsystem=R
   dh_installchangelogs -O--buildsystem=R
   dh_installsystemduser -O--buildsystem=R
   dh_perl -O--buildsystem=R
   dh_link -O--buildsystem=R
   dh_strip_nondeterminism -O--buildsystem=R
   dh_compress -O--buildsystem=R
   dh_fixperms -O--buildsystem=R
   dh_missing -O--buildsystem=R
   dh_installdeb -O--buildsystem=R
   dh_gencontrol -O--buildsystem=R
   dh_md5sums -O--buildsystem=R
   dh_builddeb -O--buildsystem=R
dpkg-deb: building package 'r-bioc-tximeta' in '../r-bioc-tximeta_1.24.0+dfsg-2_all.deb'.
 dpkg-genbuildinfo --build=binary -O../r-bioc-tximeta_1.24.0+dfsg-2_amd64.buildinfo
 dpkg-genchanges --build=binary -O../r-bioc-tximeta_1.24.0+dfsg-2_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/1572282 and its subdirectories
I: Current time: Wed Mar 18 04:10:45 -12 2026
I: pbuilder-time-stamp: 1773850245
Thu Feb 13 09:47:47 UTC 2025  I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net.
Thu Feb 13 09:47:47 UTC 2025  I: Preparing to do remote build '2' on ionos1-amd64.debian.net.
Thu Feb 13 09:55:11 UTC 2025  I: Deleting $TMPDIR on ionos1-amd64.debian.net.
Thu Feb 13 09:55:11 UTC 2025  I: r-bioc-tximeta_1.24.0+dfsg-2_amd64.changes:
Format: 1.8
Date: Tue, 14 Jan 2025 09:11:40 +0100
Source: r-bioc-tximeta
Binary: r-bioc-tximeta
Architecture: all
Version: 1.24.0+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Changed-By: Michael R. Crusoe <crusoe@debian.org>
Description:
 r-bioc-tximeta - Transcript Quantification Import with Automatic Metadata
Changes:
 r-bioc-tximeta (1.24.0+dfsg-2) unstable; urgency=medium
 .
   * Upload to unstable.
Checksums-Sha1:
 87365f505ab7788594a373cef5a038b8d963a505 540180 r-bioc-tximeta_1.24.0+dfsg-2_all.deb
 c14d3242d4a4f768a19e3642d4eb3b623974bf48 13277 r-bioc-tximeta_1.24.0+dfsg-2_amd64.buildinfo
Checksums-Sha256:
 92d54dc387ac542f49ac2c0ab2f4caea15494117b6ae793d3208567b75971563 540180 r-bioc-tximeta_1.24.0+dfsg-2_all.deb
 8894dab2e1871dd9f0c46e46754bb40f3fb035267eae589ea213377880d56da5 13277 r-bioc-tximeta_1.24.0+dfsg-2_amd64.buildinfo
Files:
 3438f40f21edbac90c3da97e316388cc 540180 gnu-r optional r-bioc-tximeta_1.24.0+dfsg-2_all.deb
 2c14581463cd87b2941344a6ddcae32d 13277 gnu-r optional r-bioc-tximeta_1.24.0+dfsg-2_amd64.buildinfo
Thu Feb 13 09:55:12 UTC 2025  I: diffoscope 288 will be used to compare the two builds:
Running as unit: rb-diffoscope-amd64_2-31769.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.0VI5LSal/r-bioc-tximeta_1.24.0+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.0VI5LSal/r-bioc-tximeta_1.24.0+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.0VI5LSal/r-bioc-tximeta_1.24.0+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.0VI5LSal/b1/r-bioc-tximeta_1.24.0+dfsg-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.0VI5LSal/b2/r-bioc-tximeta_1.24.0+dfsg-2_amd64.changes

## command (total time: 0.000s)
       0.000s      1 call     cmp (internal)

## has_same_content_as (total time: 0.000s)
       0.000s      1 call     diffoscope.comparators.binary.FilesystemFile

## main (total time: 0.003s)
       0.003s      2 calls    outputs
       0.000s      1 call     cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 230ms
CPU time consumed: 230ms
Thu Feb 13 09:55:14 UTC 2025  I: diffoscope 288 found no differences in the changes files, and a .buildinfo file also exists.
Thu Feb 13 09:55:14 UTC 2025  I: r-bioc-tximeta from unstable built successfully and reproducibly on amd64.
Thu Feb 13 09:55:15 UTC 2025  I: Submitting .buildinfo files to external archives:
Thu Feb 13 09:55:15 UTC 2025  I: Submitting 16K	b1/r-bioc-tximeta_1.24.0+dfsg-2_amd64.buildinfo.asc
Thu Feb 13 09:55:16 UTC 2025  I: Submitting 16K	b2/r-bioc-tximeta_1.24.0+dfsg-2_amd64.buildinfo.asc
Thu Feb 13 09:55:17 UTC 2025  I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Thu Feb 13 09:55:17 UTC 2025  I: Done submitting .buildinfo files.
Thu Feb 13 09:55:17 UTC 2025  I: Removing signed r-bioc-tximeta_1.24.0+dfsg-2_amd64.buildinfo.asc files:
removed './b1/r-bioc-tximeta_1.24.0+dfsg-2_amd64.buildinfo.asc'
removed './b2/r-bioc-tximeta_1.24.0+dfsg-2_amd64.buildinfo.asc'