Fri Mar 28 17:51:42 UTC 2025  I: starting to build r-base/unstable/amd64 on jenkins on '2025-03-28 17:51'
Fri Mar 28 17:51:42 UTC 2025  I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_13/36366/console.log
Fri Mar 28 17:51:42 UTC 2025  I: Downloading source for unstable/r-base=4.4.3-1
--2025-03-28 17:51:42--  http://deb.debian.org/debian/pool/main/r/r-base/r-base_4.4.3-1.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2906 (2.8K) [text/prs.lines.tag]
Saving to: ‘r-base_4.4.3-1.dsc’

     0K ..                                                    100%  451M=0s

2025-03-28 17:51:42 (451 MB/s) - ‘r-base_4.4.3-1.dsc’ saved [2906/2906]

Fri Mar 28 17:51:42 UTC 2025  I: r-base_4.4.3-1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 3.0 (quilt)
Source: r-base
Binary: r-base, r-base-core, r-base-dev, r-mathlib, r-base-html, r-doc-pdf, r-doc-html, r-doc-info, r-recommended
Architecture: any all
Version: 4.4.3-1
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Homepage: http://www.r-project.org/
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/edd/r-base
Vcs-Git: https://salsa.debian.org/edd/r-base.git
Build-Depends: gcc (>= 4:4.9.2-2), g++ (>= 4:4.9.2-2), gfortran (>= 4:4.9.2-2), libblas-dev, liblapack-dev, tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses-dev, libreadline-dev, debhelper-compat (= 13), texinfo, libbz2-dev, liblzma-dev, libpcre2-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-plain-generic, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk [!arm !hppa !kfreebsd-any !hurd-any] | openjdk-10-jdk [!arm !hppa !kfreebsd-any !hurd-any], mpack, bash-completion, libtirpc-dev
Package-List:
 r-base deb gnu-r optional arch=all
 r-base-core deb gnu-r optional arch=any
 r-base-dev deb gnu-r optional arch=all
 r-base-html deb doc optional arch=all
 r-doc-html deb doc optional arch=all
 r-doc-info deb doc optional arch=all
 r-doc-pdf deb doc optional arch=all
 r-mathlib deb gnu-r optional arch=any
 r-recommended deb gnu-r optional arch=all
Checksums-Sha1:
 c5011d67bd71cbe66fcd7c0048c74aef24752448 40234425 r-base_4.4.3.orig.tar.gz
 06fd6830add6411ce3af34d782e31d95df93f3c0 100536 r-base_4.4.3-1.debian.tar.xz
Checksums-Sha256:
 0d93d224442dea253c2b086f088db6d0d3cfd9b592cd5496e8cb2143e90fc9e8 40234425 r-base_4.4.3.orig.tar.gz
 2d26288135de83a27b46d6162be4e2b8b680dc314eb4b3de01d664307af7a7ee 100536 r-base_4.4.3-1.debian.tar.xz
Files:
 18b2b5e3c4a5e24385f563883af0175c 40234425 r-base_4.4.3.orig.tar.gz
 4e74b10b05d2c0fd2f0a1161435eefd2 100536 r-base_4.4.3-1.debian.tar.xz

-----BEGIN PGP SIGNATURE-----
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=Vvyl
-----END PGP SIGNATURE-----
Fri Mar 28 17:51:42 UTC 2025  I: Checking whether the package is not for us
Fri Mar 28 17:51:42 UTC 2025  I: Starting 1st build on remote node ionos11-amd64.debian.net.
Fri Mar 28 17:51:42 UTC 2025  I: Preparing to do remote build '1' on ionos11-amd64.debian.net.
Fri Mar 28 19:07:31 UTC 2025  I: Deleting $TMPDIR on ionos11-amd64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Fri Mar 28 05:51:45 -12 2025
I: pbuilder-time-stamp: 1743184305
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [r-base_4.4.3-1.dsc]
I: copying [./r-base_4.4.3.orig.tar.gz]
I: copying [./r-base_4.4.3-1.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./r-base_4.4.3-1.dsc: unsupported subcommand
dpkg-source: info: extracting r-base in r-base-4.4.3
dpkg-source: info: unpacking r-base_4.4.3.orig.tar.gz
dpkg-source: info: unpacking r-base_4.4.3-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying set_R_LIBS_USER_and_SITE_in_Renviron.patch
dpkg-source: info: applying r_4_4_x_tar_archive_symlink
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/2757434/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='amd64'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 '
  DISTRIBUTION='unstable'
  HOME='/root'
  HOST_ARCH='amd64'
  IFS=' 	
  '
  INVOCATION_ID='4847458417b245e2871d092a1a4d9847'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='2757434'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NN3BqmAA/pbuilderrc_X4CL --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NN3BqmAA/b1 --logfile b1/build.log r-base_4.4.3-1.dsc'
  SUDO_GID='111'
  SUDO_UID='106'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://46.16.76.132:3128'
I: uname -a
  Linux ionos11-amd64 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Mar  4 11:20 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/2757434/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: gcc (>= 4:4.9.2-2), g++ (>= 4:4.9.2-2), gfortran (>= 4:4.9.2-2), libblas-dev, liblapack-dev, tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses-dev, libreadline-dev, debhelper-compat (= 13), texinfo, libbz2-dev, liblzma-dev, libpcre2-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-plain-generic, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk | openjdk-10-jdk, mpack, bash-completion, libtirpc-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19805 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on gfortran (>= 4:4.9.2-2); however:
  Package gfortran is not installed.
 pbuilder-satisfydepends-dummy depends on libblas-dev; however:
  Package libblas-dev is not installed.
 pbuilder-satisfydepends-dummy depends on liblapack-dev; however:
  Package liblapack-dev is not installed.
 pbuilder-satisfydepends-dummy depends on tcl8.6-dev; however:
  Package tcl8.6-dev is not installed.
 pbuilder-satisfydepends-dummy depends on tk8.6-dev; however:
  Package tk8.6-dev is not installed.
 pbuilder-satisfydepends-dummy depends on bison; however:
  Package bison is not installed.
 pbuilder-satisfydepends-dummy depends on groff-base; however:
  Package groff-base is not installed.
 pbuilder-satisfydepends-dummy depends on libncurses-dev; however:
  Package libncurses-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libreadline-dev; however:
  Package libreadline-dev is not installed.
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on texinfo; however:
  Package texinfo is not installed.
 pbuilder-satisfydepends-dummy depends on libbz2-dev; however:
  Package libbz2-dev is not installed.
 pbuilder-satisfydepends-dummy depends on liblzma-dev; however:
  Package liblzma-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libpcre2-dev; however:
  Package libpcre2-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libcurl4-openssl-dev | libcurl4-dev; however:
  Package libcurl4-openssl-dev is not installed.
  Package libcurl4-dev is not installed.
 pbuilder-satisfydepends-dummy depends on xdg-utils; however:
  Package xdg-utils is not installed.
 pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
  Package zlib1g-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libpng-dev; however:
  Package libpng-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libjpeg-dev; however:
  Package libjpeg-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libx11-dev; however:
  Package libx11-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libxt-dev; however:
  Package libxt-dev is not installed.
 pbuilder-satisfydepends-dummy depends on x11proto-core-dev; however:
  Package x11proto-core-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libpango1.0-dev; however:
  Package libpango1.0-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libcairo2-dev; however:
  Package libcairo2-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libtiff-dev; however:
  Package libtiff-dev is not installed.
 pbuilder-satisfydepends-dummy depends on xvfb; however:
  Package xvfb is not installed.
 pbuilder-satisfydepends-dummy depends on xauth; however:
  Package xauth is not installed.
 pbuilder-satisfydepends-dummy depends on xfonts-base; however:
  Package xfonts-base is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-base; however:
  Package texlive-base is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-latex-base; however:
  Package texlive-latex-base is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-plain-generic; however:
  Package texlive-plain-generic is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however:
  Package texlive-fonts-recommended is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-fonts-extra; however:
  Package texlive-fonts-extra is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-extra-utils; however:
  Package texlive-extra-utils is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however:
  Package texlive-latex-recommended is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however:
  Package texlive-latex-extra is not installed.
 pbuilder-satisfydepends-dummy depends on default-jdk | openjdk-10-jdk; however:
  Package default-jdk is not installed.
  Package openjdk-10-jdk is not installed.
 pbuilder-satisfydepends-dummy depends on mpack; however:
  Package mpack is not installed.
 pbuilder-satisfydepends-dummy depends on bash-completion; however:
  Package bash-completion is not installed.
 pbuilder-satisfydepends-dummy depends on libtirpc-dev; however:
  Package libtirpc-dev is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  adwaita-icon-theme{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bash-completion{a} bison{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} comerr-dev{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} gir1.2-freedesktop{a} gir1.2-freedesktop-dev{a} gir1.2-glib-2.0{a} gir1.2-glib-2.0-dev{a} gir1.2-harfbuzz-0.0{a} gir1.2-pango-1.0{a} girepository-tools{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} icu-devtools{a} intltool-debian{a} java-common{a} krb5-multidev{a} libapache-pom-java{a} libapparmor1{a} libarchive-zip-perl{a} libasound2-data{a} libasound2t64{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas-dev{a} libblas3{a} libblkid-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcairo-gobject2{a} libcairo-script-interpreter2{a} libcairo2{a} libcairo2-dev{a} libcloudproviders0{a} libcolord2{a} libcom-err2{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdatrie-dev{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm2{a} libedit2{a} libelf1t64{a} libepoxy0{a} libevent-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libffi-dev{a} libffi8{a} libfile-homedir-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontbox-java{a} libfontconfig-dev{a} libfontconfig1{a} libfontconfig1-dev{a} libfontenc1{a} libfreetype-dev{a} libfreetype6{a} libfribidi-dev{a} libfribidi0{a} libgbm1{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgfortran-14-dev{a} libgfortran5{a} libgif7{a} libgio-2.0-dev{a} libgio-2.0-dev-bin{a} libgirepository-2.0-0{a} libgl1{a} libgl1-mesa-dri{a} libglib2.0-0t64{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgraphite2-3{a} libgraphite2-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libgtk-3-0t64{a} libgtk-3-common{a} libharfbuzz-cairo0{a} libharfbuzz-dev{a} libharfbuzz-gobject0{a} libharfbuzz-icu0{a} libharfbuzz-subset0{a} libharfbuzz0b{a} libice-dev{a} libice6{a} libicu-dev{a} libicu76{a} libidn2-0{a} libidn2-dev{a} libjbig-dev{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} libldap-dev{a} libldap2{a} liblerc-dev{a} liblerc4{a} libllvm19{a} liblzma-dev{a} liblzo2-2{a} libmagic-mgc{a} libmagic1t64{a} libmime-charset-perl{a} libmount-dev{a} libmpfi0{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libnspr4{a} libnss3{a} libp11-kit-dev{a} libp11-kit0{a} libpam-systemd{a} libpango-1.0-0{a} libpango1.0-dev{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpangoxft-1.0-0{a} libpaper-utils{a} libpaper2{a} libpciaccess0{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpcsclite1{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpixman-1-dev{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libptexenc1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline-dev{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libselinux1-dev{a} libsensors-config{a} libsensors5{a} libsepol-dev{a} libsharpyuv-dev{a} libsharpyuv0{a} libsm-dev{a} libsm6{a} libsombok3{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsynctex2{a} libsysprof-capture-4-dev{a} libsystemd-shared{a} libtasn1-6{a} libtasn1-6-dev{a} libtcl8.6{a} libteckit0{a} libtexlua53-5{a} libtext-charwidth-perl{a} libtext-unidecode-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai-dev{a} libthai0{a} libtiff-dev{a} libtiff6{a} libtiffxx6{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libunbound8{a} libunicode-linebreak-perl{a} libunistring5{a} libunwind8{a} libvulkan1{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp-dev{a} libwebp7{a} libwebpdecoder3{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxaw7{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-render0-dev{a} libxcb-shm0{a} libxcb-shm0-dev{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes3{a} libxfont2{a} libxft-dev{a} libxft2{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxkbfile1{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2{a} libxmu6{a} libxmuu1{a} libxpm4{a} libxrandr2{a} libxrender-dev{a} libxrender1{a} libxshmfence1{a} libxss-dev{a} libxss1{a} libxt-dev{a} libxt6t64{a} libxtst6{a} libxxf86vm1{a} libyaml-tiny-perl{a} libz3-4{a} libzstd-dev{a} libzzip-0-13t64{a} lmodern{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} mpack{a} native-architecture{a} netbase{a} nettle-dev{a} openjdk-21-jdk{a} openjdk-21-jdk-headless{a} openjdk-21-jre{a} openjdk-21-jre-headless{a} openssl{a} pango1.0-tools{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} preview-latex-style{a} procps{a} python3{a} python3-minimal{a} python3-packaging{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} shared-mime-info{a} systemd{a} systemd-sysv{a} t1utils{a} tcl8.6{a} tcl8.6-dev{a} tex-common{a} texinfo{a} texinfo-lib{a} texlive-base{a} texlive-binaries{a} texlive-extra-utils{a} texlive-fonts-extra{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-luatex{a} texlive-pictures{a} texlive-plain-generic{a} tk8.6{a} tk8.6-dev{a} tzdata{a} ucf{a} uuid-dev{a} x11-common{a} x11-xkb-utils{a} x11proto-core-dev{a} x11proto-dev{a} xauth{a} xdg-utils{a} xfonts-base{a} xfonts-encodings{a} xfonts-utils{a} xkb-data{a} xorg-sgml-doctools{a} xserver-common{a} xtrans-dev{a} xvfb{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  alsa-topology-conf alsa-ucm-conf at-spi2-core bzip2-doc chrony cm-super curl dvisvgm fonts-adf-accanthis fonts-adf-berenis fonts-adf-gillius fonts-adf-universalis fonts-cabin fonts-cantarell fonts-clear-sans fonts-comfortaa fonts-comic-neue fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu-extra fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-go fonts-inter fonts-lato fonts-linuxlibertine fonts-lobstertwo fonts-noto-color-emoji fonts-noto-core fonts-noto-mono fonts-oflb-asana-math fonts-open-sans fonts-paratype fonts-roboto-slab fonts-roboto-unhinted fonts-sil-andika fonts-sil-charis fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix ghostscript javascript-common krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libfile-mimeinfo-perl libgdk-pixbuf2.0-bin libgpm2 libgtk-3-bin libkmod2 libldap-common liblog-log4perl-perl libltdl-dev libmail-sendmail-perl libnet-dbus-perl libnss-systemd libpng-tools librsvg2-common libsasl2-modules libspreadsheet-parseexcel-perl libtasn1-doc libwww-perl libx11-protocol-perl libxml-sax-expat-perl linux-sysctl-defaults lynx mesa-vulkan-drivers ntpsec openntpd psmisc publicsuffix ruby systemd-cryptsetup systemd-timesyncd tex-gyre texlive-fonts-extra-links tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs 
0 packages upgraded, 404 newly installed, 0 to remove and 0 not upgraded.
Need to get 1182 MB of archives. After unpacking 3408 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main amd64 libsystemd-shared amd64 257.4-5 [2141 kB]
Get: 2 http://deb.debian.org/debian unstable/main amd64 libapparmor1 amd64 4.1.0~beta5-5 [43.5 kB]
Get: 3 http://deb.debian.org/debian unstable/main amd64 systemd amd64 257.4-5 [3087 kB]
Get: 4 http://deb.debian.org/debian unstable/main amd64 systemd-sysv amd64 257.4-5 [62.7 kB]
Get: 5 http://deb.debian.org/debian unstable/main amd64 libdbus-1-3 amd64 1.16.2-2 [178 kB]
Get: 6 http://deb.debian.org/debian unstable/main amd64 dbus-bin amd64 1.16.2-2 [80.0 kB]
Get: 7 http://deb.debian.org/debian unstable/main amd64 dbus-session-bus-common all 1.16.2-2 [52.3 kB]
Get: 8 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-1 [108 kB]
Get: 9 http://deb.debian.org/debian unstable/main amd64 dbus-daemon amd64 1.16.2-2 [159 kB]
Get: 10 http://deb.debian.org/debian unstable/main amd64 dbus-system-bus-common all 1.16.2-2 [53.5 kB]
Get: 11 http://deb.debian.org/debian unstable/main amd64 dbus amd64 1.16.2-2 [71.6 kB]
Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.2-2 [859 kB]
Get: 13 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.2-2 [2210 kB]
Get: 14 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.2-2 [27.1 kB]
Get: 15 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB]
Get: 16 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB]
Get: 17 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-1 [259 kB]
Get: 18 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB]
Get: 19 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB]
Get: 20 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB]
Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [1952 kB]
Get: 22 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.2-2 [746 kB]
Get: 23 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.1 kB]
Get: 24 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.2-2 [28.1 kB]
Get: 25 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB]
Get: 26 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-7 [878 kB]
Get: 27 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get: 28 http://deb.debian.org/debian unstable/main amd64 bash-completion all 1:2.16.0-7 [319 kB]
Get: 29 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.4.1-1 [1427 kB]
Get: 30 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20241223 [164 kB]
Get: 31 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-3 [337 kB]
Get: 32 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-3 [109 kB]
Get: 33 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-3 [43.5 kB]
Get: 34 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB]
Get: 35 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get: 36 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB]
Get: 37 http://deb.debian.org/debian unstable/main amd64 libpam-systemd amd64 257.4-5 [295 kB]
Get: 38 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB]
Get: 39 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get: 40 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB]
Get: 41 http://deb.debian.org/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B]
Get: 42 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B]
Get: 43 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0050 [42.7 kB]
Get: 44 http://deb.debian.org/debian unstable/main amd64 libgdk-pixbuf2.0-common all 2.42.12+dfsg-2 [311 kB]
Get: 45 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.84.0-2 [1513 kB]
Get: 46 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB]
Get: 47 http://deb.debian.org/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b2 [760 kB]
Get: 48 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB]
Get: 49 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.47-1.1 [282 kB]
Get: 50 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB]
Get: 51 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB]
Get: 52 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB]
Get: 53 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB]
Get: 54 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB]
Get: 55 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.0-2 [345 kB]
Get: 56 http://deb.debian.org/debian unstable/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.12+dfsg-2 [140 kB]
Get: 57 http://deb.debian.org/debian unstable/main amd64 gtk-update-icon-cache amd64 4.18.2+ds-1 [51.6 kB]
Get: 58 http://deb.debian.org/debian unstable/main amd64 hicolor-icon-theme all 0.18-2 [11.8 kB]
Get: 59 http://deb.debian.org/debian unstable/main amd64 adwaita-icon-theme all 48.0-1 [504 kB]
Get: 60 http://deb.debian.org/debian unstable/main amd64 at-spi2-common all 2.56.0-3 [171 kB]
Get: 61 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-7 [294 kB]
Get: 62 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB]
Get: 63 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB]
Get: 64 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB]
Get: 65 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB]
Get: 66 http://deb.debian.org/debian unstable/main amd64 bison amd64 2:3.8.2+dfsg-1+b2 [1170 kB]
Get: 67 http://deb.debian.org/debian unstable/main amd64 ca-certificates-java all 20240118 [11.6 kB]
Get: 68 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB]
Get: 69 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.2-1+b1 [56.0 kB]
Get: 70 http://deb.debian.org/debian unstable/main amd64 dbus-user-session amd64 1.16.2-2 [52.1 kB]
Get: 71 http://deb.debian.org/debian unstable/main amd64 libdconf1 amd64 0.40.0-5 [41.8 kB]
Get: 72 http://deb.debian.org/debian unstable/main amd64 dconf-service amd64 0.40.0-5 [32.4 kB]
Get: 73 http://deb.debian.org/debian unstable/main amd64 dconf-gsettings-backend amd64 0.40.0-5 [28.6 kB]
Get: 74 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 75 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB]
Get: 76 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 77 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 78 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 79 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 80 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get: 81 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get: 82 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB]
Get: 83 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB]
Get: 84 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 85 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 86 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB]
Get: 87 http://deb.debian.org/debian unstable/main amd64 java-common all 0.76 [6776 B]
Get: 88 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB]
Get: 89 http://deb.debian.org/debian unstable/main amd64 libnspr4 amd64 2:4.36-1 [110 kB]
Get: 90 http://deb.debian.org/debian unstable/main amd64 libnss3 amd64 2:3.109-1 [1393 kB]
Get: 91 http://deb.debian.org/debian unstable/main amd64 libpcsclite1 amd64 2.3.2-1 [55.2 kB]
Get: 92 http://deb.debian.org/debian unstable/main amd64 openjdk-21-jre-headless amd64 21.0.7~8ea-1 [41.8 MB]
Get: 93 http://deb.debian.org/debian unstable/main amd64 default-jre-headless amd64 2:1.21-76 [3192 B]
Get: 94 http://deb.debian.org/debian unstable/main amd64 libatk1.0-0t64 amd64 2.56.0-3 [52.0 kB]
Get: 95 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB]
Get: 96 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB]
Get: 97 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB]
Get: 98 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB]
Get: 99 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB]
Get: 100 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB]
Get: 101 http://deb.debian.org/debian unstable/main amd64 libxi6 amd64 2:1.8.2-1 [78.9 kB]
Get: 102 http://deb.debian.org/debian unstable/main amd64 libatspi2.0-0t64 amd64 2.56.0-3 [80.6 kB]
Get: 103 http://deb.debian.org/debian unstable/main amd64 libatk-bridge2.0-0t64 amd64 2.56.0-3 [67.9 kB]
Get: 104 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB]
Get: 105 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB]
Get: 106 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 107 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 108 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.2 [318 kB]
Get: 109 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.2 [391 kB]
Get: 110 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB]
Get: 111 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB]
Get: 112 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB]
Get: 113 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB]
Get: 114 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB]
Get: 115 http://deb.debian.org/debian unstable/main amd64 libcairo-gobject2 amd64 1.18.4-1+b1 [130 kB]
Get: 116 http://deb.debian.org/debian unstable/main amd64 libcloudproviders0 amd64 0.3.6-2 [29.2 kB]
Get: 117 http://deb.debian.org/debian unstable/main amd64 libcolord2 amd64 1.4.7-3 [139 kB]
Get: 118 http://deb.debian.org/debian unstable/main amd64 libavahi-common-data amd64 0.8-16 [112 kB]
Get: 119 http://deb.debian.org/debian unstable/main amd64 libavahi-common3 amd64 0.8-16 [44.2 kB]
Get: 120 http://deb.debian.org/debian unstable/main amd64 libavahi-client3 amd64 0.8-16 [48.4 kB]
Get: 121 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB]
Get: 122 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB]
Get: 123 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB]
Get: 124 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB]
Get: 125 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB]
Get: 126 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB]
Get: 127 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B]
Get: 128 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB]
Get: 129 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB]
Get: 130 http://deb.debian.org/debian unstable/main amd64 libcups2t64 amd64 2.4.10-2+b1 [251 kB]
Get: 131 http://deb.debian.org/debian unstable/main amd64 libepoxy0 amd64 1.5.10-2 [193 kB]
Get: 132 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB]
Get: 133 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB]
Get: 134 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB]
Get: 135 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-2.2 [463 kB]
Get: 136 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB]
Get: 137 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB]
Get: 138 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB]
Get: 139 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.56.3-1 [226 kB]
Get: 140 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.56.3-1 [55.6 kB]
Get: 141 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.56.3-1 [35.7 kB]
Get: 142 http://deb.debian.org/debian unstable/main amd64 libwayland-client0 amd64 1.23.1-3 [26.8 kB]
Get: 143 http://deb.debian.org/debian unstable/main amd64 libwayland-cursor0 amd64 1.23.1-3 [11.9 kB]
Get: 144 http://deb.debian.org/debian unstable/main amd64 libwayland-egl1 amd64 1.23.1-3 [5860 B]
Get: 145 http://deb.debian.org/debian unstable/main amd64 libxcomposite1 amd64 1:0.4.6-1 [16.3 kB]
Get: 146 http://deb.debian.org/debian unstable/main amd64 libxfixes3 amd64 1:6.0.0-2+b4 [20.2 kB]
Get: 147 http://deb.debian.org/debian unstable/main amd64 libxcursor1 amd64 1:1.2.3-1 [39.7 kB]
Get: 148 http://deb.debian.org/debian unstable/main amd64 libxdamage1 amd64 1:1.1.6-1+b2 [15.5 kB]
Get: 149 http://deb.debian.org/debian unstable/main amd64 libxinerama1 amd64 2:1.1.4-3+b3 [16.0 kB]
Get: 150 http://deb.debian.org/debian unstable/main amd64 xkb-data all 2.42-1 [790 kB]
Get: 151 http://deb.debian.org/debian unstable/main amd64 libxkbcommon0 amd64 1.7.0-2 [113 kB]
Get: 152 http://deb.debian.org/debian unstable/main amd64 libxrandr2 amd64 2:1.5.4-1+b3 [36.3 kB]
Get: 153 http://deb.debian.org/debian unstable/main amd64 libgtk-3-common all 3.24.49-2 [4905 kB]
Get: 154 http://deb.debian.org/debian unstable/main amd64 libgtk-3-0t64 amd64 3.24.49-2 [2769 kB]
Get: 155 http://deb.debian.org/debian unstable/main amd64 libglvnd0 amd64 1.7.0-1+b2 [52.0 kB]
Get: 156 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.124-1 [8180 B]
Get: 157 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.124-1 [38.9 kB]
Get: 158 http://deb.debian.org/debian unstable/main amd64 libx11-xcb1 amd64 2:1.8.12-1 [247 kB]
Get: 159 http://deb.debian.org/debian unstable/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b1 [107 kB]
Get: 160 http://deb.debian.org/debian unstable/main amd64 libxcb-glx0 amd64 1.17.0-2+b1 [122 kB]
Get: 161 http://deb.debian.org/debian unstable/main amd64 libxcb-present0 amd64 1.17.0-2+b1 [106 kB]
Get: 162 http://deb.debian.org/debian unstable/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b1 [109 kB]
Get: 163 http://deb.debian.org/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b4 [19.3 kB]
Get: 164 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.124-1 [22.4 kB]
Get: 165 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB]
Get: 166 http://deb.debian.org/debian unstable/main amd64 libdrm-intel1 amd64 2.4.124-1 [63.8 kB]
Get: 167 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB]
Get: 168 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB]
Get: 169 http://deb.debian.org/debian unstable/main amd64 libllvm19 amd64 1:19.1.7-3 [26.0 MB]
Get: 170 http://deb.debian.org/debian unstable/main amd64 libsensors-config all 1:3.6.0-10 [14.6 kB]
Get: 171 http://deb.debian.org/debian unstable/main amd64 libsensors5 amd64 1:3.6.0-10+b1 [35.1 kB]
Get: 172 http://deb.debian.org/debian unstable/main amd64 libxcb-randr0 amd64 1.17.0-2+b1 [117 kB]
Get: 173 http://deb.debian.org/debian unstable/main amd64 libxcb-sync1 amd64 1.17.0-2+b1 [109 kB]
Get: 174 http://deb.debian.org/debian unstable/main amd64 libxshmfence1 amd64 1.3.3-1 [10.9 kB]
Get: 175 http://deb.debian.org/debian unstable/main amd64 mesa-libgallium amd64 25.0.2-1 [9624 kB]
Get: 176 http://deb.debian.org/debian unstable/main amd64 libwayland-server0 amd64 1.23.1-3 [34.4 kB]
Get: 177 http://deb.debian.org/debian unstable/main amd64 libgbm1 amd64 25.0.2-1 [44.1 kB]
Get: 178 http://deb.debian.org/debian unstable/main amd64 libvulkan1 amd64 1.4.309.0-1 [130 kB]
Get: 179 http://deb.debian.org/debian unstable/main amd64 libgl1-mesa-dri amd64 25.0.2-1 [45.6 kB]
Get: 180 http://deb.debian.org/debian unstable/main amd64 libglx-mesa0 amd64 25.0.2-1 [142 kB]
Get: 181 http://deb.debian.org/debian unstable/main amd64 libglx0 amd64 1.7.0-1+b2 [34.9 kB]
Get: 182 http://deb.debian.org/debian unstable/main amd64 libgl1 amd64 1.7.0-1+b2 [89.5 kB]
Get: 183 http://deb.debian.org/debian unstable/main amd64 libasound2-data all 1.2.13-1 [21.1 kB]
Get: 184 http://deb.debian.org/debian unstable/main amd64 libasound2t64 amd64 1.2.13-1+b1 [373 kB]
Get: 185 http://deb.debian.org/debian unstable/main amd64 libgif7 amd64 5.2.2-1+b1 [44.2 kB]
Get: 186 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+24 [217 kB]
Get: 187 http://deb.debian.org/debian unstable/main amd64 libxtst6 amd64 2:1.2.5-1 [25.8 kB]
Get: 188 http://deb.debian.org/debian unstable/main amd64 openjdk-21-jre amd64 21.0.7~8ea-1 [205 kB]
Get: 189 http://deb.debian.org/debian unstable/main amd64 default-jre amd64 2:1.21-76 [1068 B]
Get: 190 http://deb.debian.org/debian unstable/main amd64 openjdk-21-jdk-headless amd64 21.0.7~8ea-1 [82.8 MB]
Get: 191 http://deb.debian.org/debian unstable/main amd64 default-jdk-headless amd64 2:1.21-76 [1124 B]
Get: 192 http://deb.debian.org/debian unstable/main amd64 openjdk-21-jdk amd64 21.0.7~8ea-1 [3541 kB]
Get: 193 http://deb.debian.org/debian unstable/main amd64 default-jdk amd64 2:1.21-76 [1076 B]
Get: 194 http://deb.debian.org/debian unstable/main amd64 fonts-lmodern all 2.005-1 [4540 kB]
Get: 195 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB]
Get: 196 http://deb.debian.org/debian unstable/main amd64 libgfortran-14-dev amd64 14.2.0-19 [880 kB]
Get: 197 http://deb.debian.org/debian unstable/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-19 [11.7 MB]
Get: 198 http://deb.debian.org/debian unstable/main amd64 gfortran-14 amd64 14.2.0-19 [14.5 kB]
Get: 199 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B]
Get: 200 http://deb.debian.org/debian unstable/main amd64 gfortran amd64 4:14.2.0-1 [1436 B]
Get: 201 http://deb.debian.org/debian unstable/main amd64 gir1.2-glib-2.0 amd64 2.84.0-2 [197 kB]
Get: 202 http://deb.debian.org/debian unstable/main amd64 gir1.2-freedesktop amd64 1.84.0-1 [60.5 kB]
Get: 203 http://deb.debian.org/debian unstable/main amd64 gir1.2-glib-2.0-dev amd64 2.84.0-2 [913 kB]
Get: 204 http://deb.debian.org/debian unstable/main amd64 gir1.2-freedesktop-dev amd64 1.84.0-1 [51.6 kB]
Get: 205 http://deb.debian.org/debian unstable/main amd64 libharfbuzz-gobject0 amd64 10.2.0-1+b1 [33.1 kB]
Get: 206 http://deb.debian.org/debian unstable/main amd64 gir1.2-harfbuzz-0.0 amd64 10.2.0-1+b1 [42.4 kB]
Get: 207 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB]
Get: 208 http://deb.debian.org/debian unstable/main amd64 libpangoxft-1.0-0 amd64 1.56.3-1 [27.6 kB]
Get: 209 http://deb.debian.org/debian unstable/main amd64 gir1.2-pango-1.0 amd64 1.56.3-1 [39.1 kB]
Get: 210 http://deb.debian.org/debian unstable/main amd64 native-architecture all 0.2.6 [2264 B]
Get: 211 http://deb.debian.org/debian unstable/main amd64 libgirepository-2.0-0 amd64 2.84.0-2 [141 kB]
Get: 212 http://deb.debian.org/debian unstable/main amd64 girepository-tools amd64 2.84.0-2 [148 kB]
Get: 213 http://deb.debian.org/debian unstable/main amd64 libicu76 amd64 76.1-3 [9721 kB]
Get: 214 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 76.1-3 [215 kB]
Get: 215 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB]
Get: 216 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB]
Get: 217 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB]
Get: 218 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB]
Get: 219 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB]
Get: 220 http://deb.debian.org/debian unstable/main amd64 libapache-pom-java all 33-2 [5852 B]
Get: 221 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-2 [160 kB]
Get: 222 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.1-2 [170 kB]
Get: 223 http://deb.debian.org/debian unstable/main amd64 uuid-dev amd64 2.40.4-5 [47.8 kB]
Get: 224 http://deb.debian.org/debian unstable/main amd64 libblkid-dev amd64 2.40.4-5 [205 kB]
Get: 225 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB]
Get: 226 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB]
Get: 227 http://deb.debian.org/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b1 [55.1 kB]
Get: 228 http://deb.debian.org/debian unstable/main amd64 libcairo-script-interpreter2 amd64 1.18.4-1+b1 [59.3 kB]
Get: 229 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.7.1-1 [161 kB]
Get: 230 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB]
Get: 231 http://deb.debian.org/debian unstable/main amd64 libpng-dev amd64 1.6.47-1.1 [366 kB]
Get: 232 http://deb.debian.org/debian unstable/main amd64 libfreetype-dev amd64 2.13.3+dfsg-1 [622 kB]
Get: 233 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB]
Get: 234 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB]
Get: 235 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB]
Get: 236 http://deb.debian.org/debian unstable/main amd64 libfontconfig-dev amd64 2.15.0-2.2 [414 kB]
Get: 237 http://deb.debian.org/debian unstable/main amd64 libffi-dev amd64 3.4.7-1 [60.8 kB]
Get: 238 http://deb.debian.org/debian unstable/main amd64 libsepol-dev amd64 3.8.1-1 [373 kB]
Get: 239 http://deb.debian.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.45-1 [281 kB]
Get: 240 http://deb.debian.org/debian unstable/main amd64 libpcre2-32-0 amd64 10.45-1 [268 kB]
Get: 241 http://deb.debian.org/debian unstable/main amd64 libpcre2-posix3 amd64 10.45-1 [63.5 kB]
Get: 242 http://deb.debian.org/debian unstable/main amd64 libpcre2-dev amd64 10.45-1 [853 kB]
Get: 243 http://deb.debian.org/debian unstable/main amd64 libselinux1-dev amd64 3.8.1-1 [169 kB]
Get: 244 http://deb.debian.org/debian unstable/main amd64 libmount-dev amd64 2.40.4-5 [29.6 kB]
Get: 245 http://deb.debian.org/debian unstable/main amd64 libsysprof-capture-4-dev amd64 48.0-2 [49.9 kB]
Get: 246 http://deb.debian.org/debian unstable/main amd64 libgio-2.0-dev amd64 2.84.0-2 [1685 kB]
Get: 247 http://deb.debian.org/debian unstable/main amd64 libglib2.0-data all 2.84.0-2 [1286 kB]
Get: 248 http://deb.debian.org/debian unstable/main amd64 libglib2.0-bin amd64 2.84.0-2 [128 kB]
Get: 249 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB]
Get: 250 http://deb.debian.org/debian unstable/main amd64 libgio-2.0-dev-bin amd64 2.84.0-2 [164 kB]
Get: 251 http://deb.debian.org/debian unstable/main amd64 libglib2.0-dev-bin amd64 2.84.0-2 [52.9 kB]
Get: 252 http://deb.debian.org/debian unstable/main amd64 libglib2.0-dev amd64 2.84.0-2 [53.6 kB]
Get: 253 http://deb.debian.org/debian unstable/main amd64 libpixman-1-dev amd64 0.44.0-3 [11.4 kB]
Get: 254 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB]
Get: 255 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB]
Get: 256 http://deb.debian.org/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
Get: 257 http://deb.debian.org/debian unstable/main amd64 x11proto-dev all 2024.1-1 [603 kB]
Get: 258 http://deb.debian.org/debian unstable/main amd64 libice-dev amd64 2:1.1.1-1 [73.8 kB]
Get: 259 http://deb.debian.org/debian unstable/main amd64 libsm-dev amd64 2:1.2.6-1 [39.7 kB]
Get: 260 http://deb.debian.org/debian unstable/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB]
Get: 261 http://deb.debian.org/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.5-1 [44.3 kB]
Get: 262 http://deb.debian.org/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB]
Get: 263 http://deb.debian.org/debian unstable/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB]
Get: 264 http://deb.debian.org/debian unstable/main amd64 libx11-dev amd64 2:1.8.12-1 [894 kB]
Get: 265 http://deb.debian.org/debian unstable/main amd64 libxcb-render0-dev amd64 1.17.0-2+b1 [118 kB]
Get: 266 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0-dev amd64 1.17.0-2+b1 [108 kB]
Get: 267 http://deb.debian.org/debian unstable/main amd64 libxext-dev amd64 2:1.3.4-1+b3 [104 kB]
Get: 268 http://deb.debian.org/debian unstable/main amd64 libxrender-dev amd64 1:0.9.12-1 [39.0 kB]
Get: 269 http://deb.debian.org/debian unstable/main amd64 libcairo2-dev amd64 1.18.4-1+b1 [43.4 kB]
Get: 270 http://deb.debian.org/debian unstable/main amd64 libcommons-parent-java all 56-1 [10.8 kB]
Get: 271 http://deb.debian.org/debian unstable/main amd64 libcommons-logging-java all 1.3.0-1 [68.6 kB]
Get: 272 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB]
Get: 273 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB]
Get: 274 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB]
Get: 275 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB]
Get: 276 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB]
Get: 277 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB]
Get: 278 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB]
Get: 279 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB]
Get: 280 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.13.0~rc3-1 [380 kB]
Get: 281 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.8-2 [103 kB]
Get: 282 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB]
Get: 283 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.6.9+dfsg-2 [311 kB]
Get: 284 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB]
Get: 285 http://deb.debian.org/debian unstable/main amd64 libnghttp3-dev amd64 1.8.0-1 [91.3 kB]
Get: 286 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB]
Get: 287 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB]
Get: 288 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB]
Get: 289 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB]
Get: 290 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.22.0-1+b1 [598 kB]
Get: 291 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.9-2 [455 kB]
Get: 292 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.9-2 [455 kB]
Get: 293 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB]
Get: 294 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB]
Get: 295 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB]
Get: 296 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.9-2 [1401 kB]
Get: 297 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB]
Get: 298 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.4.1-1 [2787 kB]
Get: 299 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB]
Get: 300 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.7+dfsg-1 [371 kB]
Get: 301 http://deb.debian.org/debian unstable/main amd64 libcurl4-openssl-dev amd64 8.13.0~rc3-1 [497 kB]
Get: 302 http://deb.debian.org/debian unstable/main amd64 libdatrie-dev amd64 0.2.13-3+b1 [18.4 kB]
Get: 303 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.23-1+b1 [56.0 kB]
Get: 304 http://deb.debian.org/debian unstable/main amd64 libfile-which-perl all 1.27-2 [15.1 kB]
Get: 305 http://deb.debian.org/debian unstable/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB]
Get: 306 http://deb.debian.org/debian unstable/main amd64 libfontbox-java all 1:1.8.16-5 [211 kB]
Get: 307 http://deb.debian.org/debian unstable/main amd64 libfontconfig1-dev amd64 2.15.0-2.2 [269 kB]
Get: 308 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB]
Get: 309 http://deb.debian.org/debian unstable/main amd64 libfribidi-dev amd64 1.0.16-1 [65.9 kB]
Get: 310 http://deb.debian.org/debian unstable/main amd64 libgraphite2-dev amd64 1.3.14-2+b1 [20.3 kB]
Get: 311 http://deb.debian.org/debian unstable/main amd64 libharfbuzz-cairo0 amd64 10.2.0-1+b1 [45.8 kB]
Get: 312 http://deb.debian.org/debian unstable/main amd64 libharfbuzz-icu0 amd64 10.2.0-1+b1 [15.6 kB]
Get: 313 http://deb.debian.org/debian unstable/main amd64 libharfbuzz-subset0 amd64 10.2.0-1+b1 [560 kB]
Get: 314 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 76.1-3 [10.8 MB]
Get: 315 http://deb.debian.org/debian unstable/main amd64 libharfbuzz-dev amd64 10.2.0-1+b1 [145 kB]
Get: 316 http://deb.debian.org/debian unstable/main amd64 libjbig-dev amd64 2.1-6.1+b2 [31.4 kB]
Get: 317 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3.1 [292 kB]
Get: 318 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-3.1 [72.0 kB]
Get: 319 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 320 http://deb.debian.org/debian unstable/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [157 kB]
Get: 321 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB]
Get: 322 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.1-2 [4998 kB]
Get: 323 http://deb.debian.org/debian unstable/main amd64 liblerc-dev amd64 4.0.0+ds-5 [183 kB]
Get: 324 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.6.4-1 [323 kB]
Get: 325 http://deb.debian.org/debian unstable/main amd64 libmime-charset-perl all 1.013.1-2 [34.0 kB]
Get: 326 http://deb.debian.org/debian unstable/main amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB]
Get: 327 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.5+20250216-2 [105 kB]
Get: 328 http://deb.debian.org/debian unstable/main amd64 libncurses-dev amd64 6.5+20250216-2 [353 kB]
Get: 329 http://deb.debian.org/debian unstable/main amd64 libthai-dev amd64 0.1.29-2+b1 [24.5 kB]
Get: 330 http://deb.debian.org/debian unstable/main amd64 libxft-dev amd64 2.3.6-1+b4 [73.2 kB]
Get: 331 http://deb.debian.org/debian unstable/main amd64 pango1.0-tools amd64 1.56.3-1 [44.3 kB]
Get: 332 http://deb.debian.org/debian unstable/main amd64 libpango1.0-dev amd64 1.56.3-1 [156 kB]
Get: 333 http://deb.debian.org/debian unstable/main amd64 libpaper2 amd64 2.2.5-0.3+b1 [16.6 kB]
Get: 334 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 2.2.5-0.3+b1 [16.4 kB]
Get: 335 http://deb.debian.org/debian unstable/main amd64 libpdfbox-java all 1:1.8.16-5 [5527 kB]
Get: 336 http://deb.debian.org/debian unstable/main amd64 libpotrace0 amd64 1.16-2+b2 [25.6 kB]
Get: 337 http://deb.debian.org/debian unstable/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [49.3 kB]
Get: 338 http://deb.debian.org/debian unstable/main amd64 libreadline-dev amd64 8.2-6 [153 kB]
Get: 339 http://deb.debian.org/debian unstable/main amd64 libsharpyuv-dev amd64 1.5.0-0.1 [120 kB]
Get: 340 http://deb.debian.org/debian unstable/main amd64 libsombok3 amd64 2.4.0-2+b2 [31.8 kB]
Get: 341 http://deb.debian.org/debian unstable/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.9 kB]
Get: 342 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB]
Get: 343 http://deb.debian.org/debian unstable/main amd64 libteckit0 amd64 2.5.12+ds1-1+b1 [341 kB]
Get: 344 http://deb.debian.org/debian unstable/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [114 kB]
Get: 345 http://deb.debian.org/debian unstable/main amd64 libtext-unidecode-perl all 1.30-3 [101 kB]
Get: 346 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB]
Get: 347 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB]
Get: 348 http://deb.debian.org/debian unstable/main amd64 libwebpdecoder3 amd64 1.5.0-0.1 [208 kB]
Get: 349 http://deb.debian.org/debian unstable/main amd64 libwebp-dev amd64 1.5.0-0.1 [450 kB]
Get: 350 http://deb.debian.org/debian unstable/main amd64 libtiffxx6 amd64 4.7.0-2 [164 kB]
Get: 351 http://deb.debian.org/debian unstable/main amd64 libtiff-dev amd64 4.7.0-2 [488 kB]
Get: 352 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.6+ds-1 [11.0 kB]
Get: 353 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.6+ds-1 [83.3 kB]
Get: 354 http://deb.debian.org/debian unstable/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [191 kB]
Get: 355 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB]
Get: 356 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB]
Get: 357 http://deb.debian.org/debian unstable/main amd64 libunicode-linebreak-perl amd64 0.0.20190101-1+b9 [96.1 kB]
Get: 358 http://deb.debian.org/debian unstable/main amd64 libunwind8 amd64 1.8.1-0.1 [56.3 kB]
Get: 359 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b2 [188 kB]
Get: 360 http://deb.debian.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-3+b4 [59.0 kB]
Get: 361 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b3 [56.2 kB]
Get: 362 http://deb.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.16-1 [212 kB]
Get: 363 http://deb.debian.org/debian unstable/main amd64 libxfont2 amd64 1:2.0.6-1+b3 [132 kB]
Get: 364 http://deb.debian.org/debian unstable/main amd64 libxkbfile1 amd64 1:1.1.0-1+b4 [76.5 kB]
Get: 365 http://deb.debian.org/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB]
Get: 366 http://deb.debian.org/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB]
Get: 367 http://deb.debian.org/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB]
Get: 368 http://deb.debian.org/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-5+b2 [314 kB]
Get: 369 http://deb.debian.org/debian unstable/main amd64 libxmuu1 amd64 2:1.1.3-3+b4 [21.9 kB]
Get: 370 http://deb.debian.org/debian unstable/main amd64 libxss-dev amd64 1:1.2.3-1+b3 [22.7 kB]
Get: 371 http://deb.debian.org/debian unstable/main amd64 libxt-dev amd64 1:1.2.1-1.2+b2 [407 kB]
Get: 372 http://deb.debian.org/debian unstable/main amd64 libyaml-tiny-perl all 1.76-1 [29.8 kB]
Get: 373 http://deb.debian.org/debian unstable/main amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [59.0 kB]
Get: 374 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.19 [29.4 kB]
Get: 375 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get: 376 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB]
Get: 377 http://deb.debian.org/debian unstable/main amd64 lmodern all 2.005-1 [9480 kB]
Get: 378 http://deb.debian.org/debian unstable/main amd64 mpack amd64 1.6-18+b2 [37.8 kB]
Get: 379 http://deb.debian.org/debian unstable/main amd64 preview-latex-style all 13.2-1 [350 kB]
Get: 380 http://deb.debian.org/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB]
Get: 381 http://deb.debian.org/debian unstable/main amd64 tcl8.6 amd64 8.6.16+dfsg-1 [121 kB]
Get: 382 http://deb.debian.org/debian unstable/main amd64 tcl8.6-dev amd64 8.6.16+dfsg-1 [1032 kB]
Get: 383 http://deb.debian.org/debian unstable/main amd64 texinfo-lib amd64 7.1.1-1+b1 [232 kB]
Get: 384 http://deb.debian.org/debian unstable/main amd64 texinfo all 7.1.1-1 [1753 kB]
Get: 385 http://deb.debian.org/debian unstable/main amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [8446 kB]
Get: 386 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.2.1-2 [75.8 kB]
Get: 387 http://deb.debian.org/debian unstable/main amd64 texlive-base all 2024.20250309-1 [23.1 MB]
Get: 388 http://deb.debian.org/debian unstable/main amd64 texlive-latex-base all 2024.20250309-1 [1294 kB]
Get: 389 http://deb.debian.org/debian unstable/main amd64 texlive-luatex all 2024.20250309-1 [29.1 MB]
Get: 390 http://deb.debian.org/debian unstable/main amd64 texlive-plain-generic all 2024.20250309-2 [29.0 MB]
Get: 391 http://deb.debian.org/debian unstable/main amd64 texlive-extra-utils all 2024.20250309-2 [67.6 MB]
Get: 392 http://deb.debian.org/debian unstable/main amd64 texlive-fonts-extra all 2024.20250309-2 [624 MB]
Get: 393 http://deb.debian.org/debian unstable/main amd64 texlive-fonts-recommended all 2024.20250309-1 [4989 kB]
Get: 394 http://deb.debian.org/debian unstable/main amd64 texlive-latex-recommended all 2024.20250309-1 [8745 kB]
Get: 395 http://deb.debian.org/debian unstable/main amd64 texlive-pictures all 2024.20250309-1 [17.0 MB]
Get: 396 http://deb.debian.org/debian unstable/main amd64 texlive-latex-extra all 2024.20250309-2 [25.2 MB]
Get: 397 http://deb.debian.org/debian unstable/main amd64 tk8.6 amd64 8.6.16-1 [69.6 kB]
Get: 398 http://deb.debian.org/debian unstable/main amd64 x11proto-core-dev all 2024.1-1 [3312 B]
Get: 399 http://deb.debian.org/debian unstable/main amd64 tk8.6-dev amd64 8.6.16-1 [794 kB]
Get: 400 http://deb.debian.org/debian unstable/main amd64 x11-xkb-utils amd64 7.7+9 [159 kB]
Get: 401 http://deb.debian.org/debian unstable/main amd64 xauth amd64 1:1.1.2-1.1 [35.9 kB]
Get: 402 http://deb.debian.org/debian unstable/main amd64 xfonts-base all 1:1.0.5+nmu1 [5895 kB]
Get: 403 http://deb.debian.org/debian unstable/main amd64 xserver-common all 2:21.1.16-1 [2409 kB]
Get: 404 http://deb.debian.org/debian unstable/main amd64 xvfb amd64 2:21.1.16-1 [3189 kB]
Fetched 1182 MB in 37s (31.8 MB/s)
Preconfiguring packages ...
Selecting previously unselected package libsystemd-shared:amd64.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19805 files and directories currently installed.)
Preparing to unpack .../libsystemd-shared_257.4-5_amd64.deb ...
Unpacking libsystemd-shared:amd64 (257.4-5) ...
Selecting previously unselected package libapparmor1:amd64.
Preparing to unpack .../libapparmor1_4.1.0~beta5-5_amd64.deb ...
Unpacking libapparmor1:amd64 (4.1.0~beta5-5) ...
Setting up libsystemd-shared:amd64 (257.4-5) ...
Selecting previously unselected package systemd.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19818 files and directories currently installed.)
Preparing to unpack .../systemd_257.4-5_amd64.deb ...
Unpacking systemd (257.4-5) ...
Setting up libapparmor1:amd64 (4.1.0~beta5-5) ...
Setting up systemd (257.4-5) ...
Created symlink '/etc/systemd/system/getty.target.wants/getty@tty1.service' -> '/usr/lib/systemd/system/getty@.service'.

Created symlink '/etc/systemd/system/multi-user.target.wants/remote-fs.target' -> '/usr/lib/systemd/system/remote-fs.target'.

Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-pstore.service' -> '/usr/lib/systemd/system/systemd-pstore.service'.

Initializing machine ID from random generator.

Creating group 'systemd-journal' with GID 999.

Creating group 'systemd-network' with GID 998.

Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998.

/usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring.

Selecting previously unselected package systemd-sysv.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 20756 files and directories currently installed.)
Preparing to unpack .../0-systemd-sysv_257.4-5_amd64.deb ...
Unpacking systemd-sysv (257.4-5) ...
Selecting previously unselected package libdbus-1-3:amd64.
Preparing to unpack .../1-libdbus-1-3_1.16.2-2_amd64.deb ...
Unpacking libdbus-1-3:amd64 (1.16.2-2) ...
Selecting previously unselected package dbus-bin.
Preparing to unpack .../2-dbus-bin_1.16.2-2_amd64.deb ...
Unpacking dbus-bin (1.16.2-2) ...
Selecting previously unselected package dbus-session-bus-common.
Preparing to unpack .../3-dbus-session-bus-common_1.16.2-2_all.deb ...
Unpacking dbus-session-bus-common (1.16.2-2) ...
Selecting previously unselected package libexpat1:amd64.
Preparing to unpack .../4-libexpat1_2.7.1-1_amd64.deb ...
Unpacking libexpat1:amd64 (2.7.1-1) ...
Selecting previously unselected package dbus-daemon.
Preparing to unpack .../5-dbus-daemon_1.16.2-2_amd64.deb ...
Unpacking dbus-daemon (1.16.2-2) ...
Selecting previously unselected package dbus-system-bus-common.
Preparing to unpack .../6-dbus-system-bus-common_1.16.2-2_all.deb ...
Unpacking dbus-system-bus-common (1.16.2-2) ...
Selecting previously unselected package dbus.
Preparing to unpack .../7-dbus_1.16.2-2_amd64.deb ...
Unpacking dbus (1.16.2-2) ...
Selecting previously unselected package libpython3.13-minimal:amd64.
Preparing to unpack .../8-libpython3.13-minimal_3.13.2-2_amd64.deb ...
Unpacking libpython3.13-minimal:amd64 (3.13.2-2) ...
Selecting previously unselected package python3.13-minimal.
Preparing to unpack .../9-python3.13-minimal_3.13.2-2_amd64.deb ...
Unpacking python3.13-minimal (3.13.2-2) ...
Setting up libpython3.13-minimal:amd64 (3.13.2-2) ...
Setting up libexpat1:amd64 (2.7.1-1) ...
Setting up python3.13-minimal (3.13.2-2) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 21182 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.13.2-2_amd64.deb ...
Unpacking python3-minimal (3.13.2-2) ...
Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_13.0.0_all.deb ...
Unpacking media-types (13.0.0) ...
Selecting previously unselected package netbase.
Preparing to unpack .../2-netbase_6.5_all.deb ...
Unpacking netbase (6.5) ...
Selecting previously unselected package tzdata.
Preparing to unpack .../3-tzdata_2025b-1_all.deb ...
Unpacking tzdata (2025b-1) ...
Selecting previously unselected package libffi8:amd64.
Preparing to unpack .../4-libffi8_3.4.7-1_amd64.deb ...
Unpacking libffi8:amd64 (3.4.7-1) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../5-readline-common_8.2-6_all.deb ...
Unpacking readline-common (8.2-6) ...
Selecting previously unselected package libreadline8t64:amd64.
Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ...
Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
Unpacking libreadline8t64:amd64 (8.2-6) ...
Selecting previously unselected package libpython3.13-stdlib:amd64.
Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-2_amd64.deb ...
Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) ...
Selecting previously unselected package python3.13.
Preparing to unpack .../8-python3.13_3.13.2-2_amd64.deb ...
Unpacking python3.13 (3.13.2-2) ...
Selecting previously unselected package libpython3-stdlib:amd64.
Preparing to unpack .../9-libpython3-stdlib_3.13.2-2_amd64.deb ...
Unpacking libpython3-stdlib:amd64 (3.13.2-2) ...
Setting up python3-minimal (3.13.2-2) ...
Selecting previously unselected package python3.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 22193 files and directories currently installed.)
Preparing to unpack .../000-python3_3.13.2-2_amd64.deb ...
Unpacking python3 (3.13.2-2) ...
Selecting previously unselected package libproc2-0:amd64.
Preparing to unpack .../001-libproc2-0_2%3a4.0.4-7_amd64.deb ...
Unpacking libproc2-0:amd64 (2:4.0.4-7) ...
Selecting previously unselected package procps.
Preparing to unpack .../002-procps_2%3a4.0.4-7_amd64.deb ...
Unpacking procps (2:4.0.4-7) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package bash-completion.
Preparing to unpack .../004-bash-completion_1%3a2.16.0-7_all.deb ...
Unpacking bash-completion (1:2.16.0-7) ...
Selecting previously unselected package openssl.
Preparing to unpack .../005-openssl_3.4.1-1_amd64.deb ...
Unpacking openssl (3.4.1-1) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../006-ca-certificates_20241223_all.deb ...
Unpacking ca-certificates (20241223) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../007-libmagic-mgc_1%3a5.46-3_amd64.deb ...
Unpacking libmagic-mgc (1:5.46-3) ...
Selecting previously unselected package libmagic1t64:amd64.
Preparing to unpack .../008-libmagic1t64_1%3a5.46-3_amd64.deb ...
Unpacking libmagic1t64:amd64 (1:5.46-3) ...
Selecting previously unselected package file.
Preparing to unpack .../009-file_1%3a5.46-3_amd64.deb ...
Unpacking file (1:5.46-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../010-gettext-base_0.23.1-1_amd64.deb ...
Unpacking gettext-base (0.23.1-1) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../011-libuchardet0_0.0.8-1+b2_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.8-1+b2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../012-groff-base_1.23.0-7_amd64.deb ...
Unpacking groff-base (1.23.0-7) ...
Selecting previously unselected package libpam-systemd:amd64.
Preparing to unpack .../013-libpam-systemd_257.4-5_amd64.deb ...
Unpacking libpam-systemd:amd64 (257.4-5) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../014-bsdextrautils_2.40.4-5_amd64.deb ...
Unpacking bsdextrautils (2.40.4-5) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../015-libpipeline1_1.5.8-1_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.8-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../016-man-db_2.13.0-1_amd64.deb ...
Unpacking man-db (2.13.0-1) ...
Selecting previously unselected package libtext-charwidth-perl:amd64.
Preparing to unpack .../017-libtext-charwidth-perl_0.04-11+b4_amd64.deb ...
Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ...
Selecting previously unselected package libtext-wrapi18n-perl.
Preparing to unpack .../018-libtext-wrapi18n-perl_0.06-10_all.deb ...
Unpacking libtext-wrapi18n-perl (0.06-10) ...
Selecting previously unselected package ucf.
Preparing to unpack .../019-ucf_3.0050_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0050) ...
Selecting previously unselected package libgdk-pixbuf2.0-common.
Preparing to unpack .../020-libgdk-pixbuf2.0-common_2.42.12+dfsg-2_all.deb ...
Unpacking libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ...
Selecting previously unselected package libglib2.0-0t64:amd64.
Preparing to unpack .../021-libglib2.0-0t64_2.84.0-2_amd64.deb ...
Unpacking libglib2.0-0t64:amd64 (2.84.0-2) ...
Selecting previously unselected package libxml2:amd64.
Preparing to unpack .../022-libxml2_2.12.7+dfsg+really2.9.14-0.4_amd64.deb ...
Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ...
Selecting previously unselected package shared-mime-info.
Preparing to unpack .../023-shared-mime-info_2.4-5+b2_amd64.deb ...
Unpacking shared-mime-info (2.4-5+b2) ...
Selecting previously unselected package libjpeg62-turbo:amd64.
Preparing to unpack .../024-libjpeg62-turbo_1%3a2.1.5-3.1_amd64.deb ...
Unpacking libjpeg62-turbo:amd64 (1:2.1.5-3.1) ...
Selecting previously unselected package libpng16-16t64:amd64.
Preparing to unpack .../025-libpng16-16t64_1.6.47-1.1_amd64.deb ...
Unpacking libpng16-16t64:amd64 (1.6.47-1.1) ...
Selecting previously unselected package libdeflate0:amd64.
Preparing to unpack .../026-libdeflate0_1.23-1+b1_amd64.deb ...
Unpacking libdeflate0:amd64 (1.23-1+b1) ...
Selecting previously unselected package libjbig0:amd64.
Preparing to unpack .../027-libjbig0_2.1-6.1+b2_amd64.deb ...
Unpacking libjbig0:amd64 (2.1-6.1+b2) ...
Selecting previously unselected package liblerc4:amd64.
Preparing to unpack .../028-liblerc4_4.0.0+ds-5_amd64.deb ...
Unpacking liblerc4:amd64 (4.0.0+ds-5) ...
Selecting previously unselected package libsharpyuv0:amd64.
Preparing to unpack .../029-libsharpyuv0_1.5.0-0.1_amd64.deb ...
Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ...
Selecting previously unselected package libwebp7:amd64.
Preparing to unpack .../030-libwebp7_1.5.0-0.1_amd64.deb ...
Unpacking libwebp7:amd64 (1.5.0-0.1) ...
Selecting previously unselected package libtiff6:amd64.
Preparing to unpack .../031-libtiff6_4.7.0-2_amd64.deb ...
Unpacking libtiff6:amd64 (4.7.0-2) ...
Selecting previously unselected package libgdk-pixbuf-2.0-0:amd64.
Preparing to unpack .../032-libgdk-pixbuf-2.0-0_2.42.12+dfsg-2_amd64.deb ...
Unpacking libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-2) ...
Selecting previously unselected package gtk-update-icon-cache.
Preparing to unpack .../033-gtk-update-icon-cache_4.18.2+ds-1_amd64.deb ...
No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed.
No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed.
Unpacking gtk-update-icon-cache (4.18.2+ds-1) ...
Selecting previously unselected package hicolor-icon-theme.
Preparing to unpack .../034-hicolor-icon-theme_0.18-2_all.deb ...
Unpacking hicolor-icon-theme (0.18-2) ...
Selecting previously unselected package adwaita-icon-theme.
Preparing to unpack .../035-adwaita-icon-theme_48.0-1_all.deb ...
Unpacking adwaita-icon-theme (48.0-1) ...
Selecting previously unselected package at-spi2-common.
Preparing to unpack .../036-at-spi2-common_2.56.0-3_all.deb ...
Unpacking at-spi2-common (2.56.0-3) ...
Selecting previously unselected package m4.
Preparing to unpack .../037-m4_1.4.19-7_amd64.deb ...
Unpacking m4 (1.4.19-7) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../038-autoconf_2.72-3_all.deb ...
Unpacking autoconf (2.72-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../039-autotools-dev_20240727.1_all.deb ...
Unpacking autotools-dev (20240727.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../040-automake_1%3a1.17-4_all.deb ...
Unpacking automake (1:1.17-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../041-autopoint_0.23.1-1_all.deb ...
Unpacking autopoint (0.23.1-1) ...
Selecting previously unselected package bison.
Preparing to unpack .../042-bison_2%3a3.8.2+dfsg-1+b2_amd64.deb ...
Unpacking bison (2:3.8.2+dfsg-1+b2) ...
Selecting previously unselected package ca-certificates-java.
Preparing to unpack .../043-ca-certificates-java_20240118_all.deb ...
Unpacking ca-certificates-java (20240118) ...
Selecting previously unselected package libcom-err2:amd64.
Preparing to unpack .../044-libcom-err2_1.47.2-1+b1_amd64.deb ...
Unpacking libcom-err2:amd64 (1.47.2-1+b1) ...
Selecting previously unselected package comerr-dev:amd64.
Preparing to unpack .../045-comerr-dev_2.1-1.47.2-1+b1_amd64.deb ...
Unpacking comerr-dev:amd64 (2.1-1.47.2-1+b1) ...
Selecting previously unselected package dbus-user-session.
Preparing to unpack .../046-dbus-user-session_1.16.2-2_amd64.deb ...
Unpacking dbus-user-session (1.16.2-2) ...
Selecting previously unselected package libdconf1:amd64.
Preparing to unpack .../047-libdconf1_0.40.0-5_amd64.deb ...
Unpacking libdconf1:amd64 (0.40.0-5) ...
Selecting previously unselected package dconf-service.
Preparing to unpack .../048-dconf-service_0.40.0-5_amd64.deb ...
Unpacking dconf-service (0.40.0-5) ...
Selecting previously unselected package dconf-gsettings-backend:amd64.
Preparing to unpack .../049-dconf-gsettings-backend_0.40.0-5_amd64.deb ...
Unpacking dconf-gsettings-backend:amd64 (0.40.0-5) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../050-libdebhelper-perl_13.24.1_all.deb ...
Unpacking libdebhelper-perl (13.24.1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../051-libtool_2.5.4-4_all.deb ...
Unpacking libtool (2.5.4-4) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../052-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../053-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../054-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../055-dh-strip-nondeterminism_1.14.1-2_all.deb ...
Unpacking dh-strip-nondeterminism (1.14.1-2) ...
Selecting previously unselected package libelf1t64:amd64.
Preparing to unpack .../056-libelf1t64_0.192-4_amd64.deb ...
Unpacking libelf1t64:amd64 (0.192-4) ...
Selecting previously unselected package dwz.
Preparing to unpack .../057-dwz_0.15-1+b1_amd64.deb ...
Unpacking dwz (0.15-1+b1) ...
Selecting previously unselected package libunistring5:amd64.
Preparing to unpack .../058-libunistring5_1.3-2_amd64.deb ...
Unpacking libunistring5:amd64 (1.3-2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../059-gettext_0.23.1-1_amd64.deb ...
Unpacking gettext (0.23.1-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../060-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../061-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../062-debhelper_13.24.1_all.deb ...
Unpacking debhelper (13.24.1) ...
Selecting previously unselected package java-common.
Preparing to unpack .../063-java-common_0.76_all.deb ...
Unpacking java-common (0.76) ...
Selecting previously unselected package liblcms2-2:amd64.
Preparing to unpack .../064-liblcms2-2_2.16-2_amd64.deb ...
Unpacking liblcms2-2:amd64 (2.16-2) ...
Selecting previously unselected package libnspr4:amd64.
Preparing to unpack .../065-libnspr4_2%3a4.36-1_amd64.deb ...
Unpacking libnspr4:amd64 (2:4.36-1) ...
Selecting previously unselected package libnss3:amd64.
Preparing to unpack .../066-libnss3_2%3a3.109-1_amd64.deb ...
Unpacking libnss3:amd64 (2:3.109-1) ...
Selecting previously unselected package libpcsclite1:amd64.
Preparing to unpack .../067-libpcsclite1_2.3.2-1_amd64.deb ...
Unpacking libpcsclite1:amd64 (2.3.2-1) ...
Selecting previously unselected package openjdk-21-jre-headless:amd64.
Preparing to unpack .../068-openjdk-21-jre-headless_21.0.7~8ea-1_amd64.deb ...
Unpacking openjdk-21-jre-headless:amd64 (21.0.7~8ea-1) ...
Selecting previously unselected package default-jre-headless.
Preparing to unpack .../069-default-jre-headless_2%3a1.21-76_amd64.deb ...
Unpacking default-jre-headless (2:1.21-76) ...
Selecting previously unselected package libatk1.0-0t64:amd64.
Preparing to unpack .../070-libatk1.0-0t64_2.56.0-3_amd64.deb ...
Unpacking libatk1.0-0t64:amd64 (2.56.0-3) ...
Selecting previously unselected package libxau6:amd64.
Preparing to unpack .../071-libxau6_1%3a1.0.11-1_amd64.deb ...
Unpacking libxau6:amd64 (1:1.0.11-1) ...
Selecting previously unselected package libxdmcp6:amd64.
Preparing to unpack .../072-libxdmcp6_1%3a1.1.5-1_amd64.deb ...
Unpacking libxdmcp6:amd64 (1:1.1.5-1) ...
Selecting previously unselected package libxcb1:amd64.
Preparing to unpack .../073-libxcb1_1.17.0-2+b1_amd64.deb ...
Unpacking libxcb1:amd64 (1.17.0-2+b1) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../074-libx11-data_2%3a1.8.12-1_all.deb ...
Unpacking libx11-data (2:1.8.12-1) ...
Selecting previously unselected package libx11-6:amd64.
Preparing to unpack .../075-libx11-6_2%3a1.8.12-1_amd64.deb ...
Unpacking libx11-6:amd64 (2:1.8.12-1) ...
Selecting previously unselected package libxext6:amd64.
Preparing to unpack .../076-libxext6_2%3a1.3.4-1+b3_amd64.deb ...
Unpacking libxext6:amd64 (2:1.3.4-1+b3) ...
Selecting previously unselected package libxi6:amd64.
Preparing to unpack .../077-libxi6_2%3a1.8.2-1_amd64.deb ...
Unpacking libxi6:amd64 (2:1.8.2-1) ...
Selecting previously unselected package libatspi2.0-0t64:amd64.
Preparing to unpack .../078-libatspi2.0-0t64_2.56.0-3_amd64.deb ...
Unpacking libatspi2.0-0t64:amd64 (2.56.0-3) ...
Selecting previously unselected package libatk-bridge2.0-0t64:amd64.
Preparing to unpack .../079-libatk-bridge2.0-0t64_2.56.0-3_amd64.deb ...
Unpacking libatk-bridge2.0-0t64:amd64 (2.56.0-3) ...
Selecting previously unselected package libbrotli1:amd64.
Preparing to unpack .../080-libbrotli1_1.1.0-2+b7_amd64.deb ...
Unpacking libbrotli1:amd64 (1.1.0-2+b7) ...
Selecting previously unselected package libfreetype6:amd64.
Preparing to unpack .../081-libfreetype6_2.13.3+dfsg-1_amd64.deb ...
Unpacking libfreetype6:amd64 (2.13.3+dfsg-1) ...
Selecting previously unselected package fonts-dejavu-mono.
Preparing to unpack .../082-fonts-dejavu-mono_2.37-8_all.deb ...
Unpacking fonts-dejavu-mono (2.37-8) ...
Selecting previously unselected package fonts-dejavu-core.
Preparing to unpack .../083-fonts-dejavu-core_2.37-8_all.deb ...
Unpacking fonts-dejavu-core (2.37-8) ...
Selecting previously unselected package fontconfig-config.
Preparing to unpack .../084-fontconfig-config_2.15.0-2.2_amd64.deb ...
Unpacking fontconfig-config (2.15.0-2.2) ...
Selecting previously unselected package libfontconfig1:amd64.
Preparing to unpack .../085-libfontconfig1_2.15.0-2.2_amd64.deb ...
Unpacking libfontconfig1:amd64 (2.15.0-2.2) ...
Selecting previously unselected package libpixman-1-0:amd64.
Preparing to unpack .../086-libpixman-1-0_0.44.0-3_amd64.deb ...
Unpacking libpixman-1-0:amd64 (0.44.0-3) ...
Selecting previously unselected package libxcb-render0:amd64.
Preparing to unpack .../087-libxcb-render0_1.17.0-2+b1_amd64.deb ...
Unpacking libxcb-render0:amd64 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-shm0:amd64.
Preparing to unpack .../088-libxcb-shm0_1.17.0-2+b1_amd64.deb ...
Unpacking libxcb-shm0:amd64 (1.17.0-2+b1) ...
Selecting previously unselected package libxrender1:amd64.
Preparing to unpack .../089-libxrender1_1%3a0.9.12-1_amd64.deb ...
Unpacking libxrender1:amd64 (1:0.9.12-1) ...
Selecting previously unselected package libcairo2:amd64.
Preparing to unpack .../090-libcairo2_1.18.4-1+b1_amd64.deb ...
Unpacking libcairo2:amd64 (1.18.4-1+b1) ...
Selecting previously unselected package libcairo-gobject2:amd64.
Preparing to unpack .../091-libcairo-gobject2_1.18.4-1+b1_amd64.deb ...
Unpacking libcairo-gobject2:amd64 (1.18.4-1+b1) ...
Selecting previously unselected package libcloudproviders0:amd64.
Preparing to unpack .../092-libcloudproviders0_0.3.6-2_amd64.deb ...
Unpacking libcloudproviders0:amd64 (0.3.6-2) ...
Selecting previously unselected package libcolord2:amd64.
Preparing to unpack .../093-libcolord2_1.4.7-3_amd64.deb ...
Unpacking libcolord2:amd64 (1.4.7-3) ...
Selecting previously unselected package libavahi-common-data:amd64.
Preparing to unpack .../094-libavahi-common-data_0.8-16_amd64.deb ...
Unpacking libavahi-common-data:amd64 (0.8-16) ...
Selecting previously unselected package libavahi-common3:amd64.
Preparing to unpack .../095-libavahi-common3_0.8-16_amd64.deb ...
Unpacking libavahi-common3:amd64 (0.8-16) ...
Selecting previously unselected package libavahi-client3:amd64.
Preparing to unpack .../096-libavahi-client3_0.8-16_amd64.deb ...
Unpacking libavahi-client3:amd64 (0.8-16) ...
Selecting previously unselected package libidn2-0:amd64.
Preparing to unpack .../097-libidn2-0_2.3.8-2_amd64.deb ...
Unpacking libidn2-0:amd64 (2.3.8-2) ...
Selecting previously unselected package libp11-kit0:amd64.
Preparing to unpack .../098-libp11-kit0_0.25.5-3_amd64.deb ...
Unpacking libp11-kit0:amd64 (0.25.5-3) ...
Selecting previously unselected package libtasn1-6:amd64.
Preparing to unpack .../099-libtasn1-6_4.20.0-2_amd64.deb ...
Unpacking libtasn1-6:amd64 (4.20.0-2) ...
Selecting previously unselected package libgnutls30t64:amd64.
Preparing to unpack .../100-libgnutls30t64_3.8.9-2_amd64.deb ...
Unpacking libgnutls30t64:amd64 (3.8.9-2) ...
Selecting previously unselected package libkrb5support0:amd64.
Preparing to unpack .../101-libkrb5support0_1.21.3-5_amd64.deb ...
Unpacking libkrb5support0:amd64 (1.21.3-5) ...
Selecting previously unselected package libk5crypto3:amd64.
Preparing to unpack .../102-libk5crypto3_1.21.3-5_amd64.deb ...
Unpacking libk5crypto3:amd64 (1.21.3-5) ...
Selecting previously unselected package libkeyutils1:amd64.
Preparing to unpack .../103-libkeyutils1_1.6.3-4_amd64.deb ...
Unpacking libkeyutils1:amd64 (1.6.3-4) ...
Selecting previously unselected package libkrb5-3:amd64.
Preparing to unpack .../104-libkrb5-3_1.21.3-5_amd64.deb ...
Unpacking libkrb5-3:amd64 (1.21.3-5) ...
Selecting previously unselected package libgssapi-krb5-2:amd64.
Preparing to unpack .../105-libgssapi-krb5-2_1.21.3-5_amd64.deb ...
Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ...
Selecting previously unselected package libcups2t64:amd64.
Preparing to unpack .../106-libcups2t64_2.4.10-2+b1_amd64.deb ...
Unpacking libcups2t64:amd64 (2.4.10-2+b1) ...
Selecting previously unselected package libepoxy0:amd64.
Preparing to unpack .../107-libepoxy0_1.5.10-2_amd64.deb ...
Unpacking libepoxy0:amd64 (1.5.10-2) ...
Selecting previously unselected package libfribidi0:amd64.
Preparing to unpack .../108-libfribidi0_1.0.16-1_amd64.deb ...
Unpacking libfribidi0:amd64 (1.0.16-1) ...
Selecting previously unselected package libgraphite2-3:amd64.
Preparing to unpack .../109-libgraphite2-3_1.3.14-2+b1_amd64.deb ...
Unpacking libgraphite2-3:amd64 (1.3.14-2+b1) ...
Selecting previously unselected package libharfbuzz0b:amd64.
Preparing to unpack .../110-libharfbuzz0b_10.2.0-1+b1_amd64.deb ...
Unpacking libharfbuzz0b:amd64 (10.2.0-1+b1) ...
Selecting previously unselected package fontconfig.
Preparing to unpack .../111-fontconfig_2.15.0-2.2_amd64.deb ...
Unpacking fontconfig (2.15.0-2.2) ...
Selecting previously unselected package libthai-data.
Preparing to unpack .../112-libthai-data_0.1.29-2_all.deb ...
Unpacking libthai-data (0.1.29-2) ...
Selecting previously unselected package libdatrie1:amd64.
Preparing to unpack .../113-libdatrie1_0.2.13-3+b1_amd64.deb ...
Unpacking libdatrie1:amd64 (0.2.13-3+b1) ...
Selecting previously unselected package libthai0:amd64.
Preparing to unpack .../114-libthai0_0.1.29-2+b1_amd64.deb ...
Unpacking libthai0:amd64 (0.1.29-2+b1) ...
Selecting previously unselected package libpango-1.0-0:amd64.
Preparing to unpack .../115-libpango-1.0-0_1.56.3-1_amd64.deb ...
Unpacking libpango-1.0-0:amd64 (1.56.3-1) ...
Selecting previously unselected package libpangoft2-1.0-0:amd64.
Preparing to unpack .../116-libpangoft2-1.0-0_1.56.3-1_amd64.deb ...
Unpacking libpangoft2-1.0-0:amd64 (1.56.3-1) ...
Selecting previously unselected package libpangocairo-1.0-0:amd64.
Preparing to unpack .../117-libpangocairo-1.0-0_1.56.3-1_amd64.deb ...
Unpacking libpangocairo-1.0-0:amd64 (1.56.3-1) ...
Selecting previously unselected package libwayland-client0:amd64.
Preparing to unpack .../118-libwayland-client0_1.23.1-3_amd64.deb ...
Unpacking libwayland-client0:amd64 (1.23.1-3) ...
Selecting previously unselected package libwayland-cursor0:amd64.
Preparing to unpack .../119-libwayland-cursor0_1.23.1-3_amd64.deb ...
Unpacking libwayland-cursor0:amd64 (1.23.1-3) ...
Selecting previously unselected package libwayland-egl1:amd64.
Preparing to unpack .../120-libwayland-egl1_1.23.1-3_amd64.deb ...
Unpacking libwayland-egl1:amd64 (1.23.1-3) ...
Selecting previously unselected package libxcomposite1:amd64.
Preparing to unpack .../121-libxcomposite1_1%3a0.4.6-1_amd64.deb ...
Unpacking libxcomposite1:amd64 (1:0.4.6-1) ...
Selecting previously unselected package libxfixes3:amd64.
Preparing to unpack .../122-libxfixes3_1%3a6.0.0-2+b4_amd64.deb ...
Unpacking libxfixes3:amd64 (1:6.0.0-2+b4) ...
Selecting previously unselected package libxcursor1:amd64.
Preparing to unpack .../123-libxcursor1_1%3a1.2.3-1_amd64.deb ...
Unpacking libxcursor1:amd64 (1:1.2.3-1) ...
Selecting previously unselected package libxdamage1:amd64.
Preparing to unpack .../124-libxdamage1_1%3a1.1.6-1+b2_amd64.deb ...
Unpacking libxdamage1:amd64 (1:1.1.6-1+b2) ...
Selecting previously unselected package libxinerama1:amd64.
Preparing to unpack .../125-libxinerama1_2%3a1.1.4-3+b3_amd64.deb ...
Unpacking libxinerama1:amd64 (2:1.1.4-3+b3) ...
Selecting previously unselected package xkb-data.
Preparing to unpack .../126-xkb-data_2.42-1_all.deb ...
Unpacking xkb-data (2.42-1) ...
Selecting previously unselected package libxkbcommon0:amd64.
Preparing to unpack .../127-libxkbcommon0_1.7.0-2_amd64.deb ...
Unpacking libxkbcommon0:amd64 (1.7.0-2) ...
Selecting previously unselected package libxrandr2:amd64.
Preparing to unpack .../128-libxrandr2_2%3a1.5.4-1+b3_amd64.deb ...
Unpacking libxrandr2:amd64 (2:1.5.4-1+b3) ...
Selecting previously unselected package libgtk-3-common.
Preparing to unpack .../129-libgtk-3-common_3.24.49-2_all.deb ...
Unpacking libgtk-3-common (3.24.49-2) ...
Selecting previously unselected package libgtk-3-0t64:amd64.
Preparing to unpack .../130-libgtk-3-0t64_3.24.49-2_amd64.deb ...
Unpacking libgtk-3-0t64:amd64 (3.24.49-2) ...
Selecting previously unselected package libglvnd0:amd64.
Preparing to unpack .../131-libglvnd0_1.7.0-1+b2_amd64.deb ...
Unpacking libglvnd0:amd64 (1.7.0-1+b2) ...
Selecting previously unselected package libdrm-common.
Preparing to unpack .../132-libdrm-common_2.4.124-1_all.deb ...
Unpacking libdrm-common (2.4.124-1) ...
Selecting previously unselected package libdrm2:amd64.
Preparing to unpack .../133-libdrm2_2.4.124-1_amd64.deb ...
Unpacking libdrm2:amd64 (2.4.124-1) ...
Selecting previously unselected package libx11-xcb1:amd64.
Preparing to unpack .../134-libx11-xcb1_2%3a1.8.12-1_amd64.deb ...
Unpacking libx11-xcb1:amd64 (2:1.8.12-1) ...
Selecting previously unselected package libxcb-dri3-0:amd64.
Preparing to unpack .../135-libxcb-dri3-0_1.17.0-2+b1_amd64.deb ...
Unpacking libxcb-dri3-0:amd64 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-glx0:amd64.
Preparing to unpack .../136-libxcb-glx0_1.17.0-2+b1_amd64.deb ...
Unpacking libxcb-glx0:amd64 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-present0:amd64.
Preparing to unpack .../137-libxcb-present0_1.17.0-2+b1_amd64.deb ...
Unpacking libxcb-present0:amd64 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-xfixes0:amd64.
Preparing to unpack .../138-libxcb-xfixes0_1.17.0-2+b1_amd64.deb ...
Unpacking libxcb-xfixes0:amd64 (1.17.0-2+b1) ...
Selecting previously unselected package libxxf86vm1:amd64.
Preparing to unpack .../139-libxxf86vm1_1%3a1.1.4-1+b4_amd64.deb ...
Unpacking libxxf86vm1:amd64 (1:1.1.4-1+b4) ...
Selecting previously unselected package libdrm-amdgpu1:amd64.
Preparing to unpack .../140-libdrm-amdgpu1_2.4.124-1_amd64.deb ...
Unpacking libdrm-amdgpu1:amd64 (2.4.124-1) ...
Selecting previously unselected package libpciaccess0:amd64.
Preparing to unpack .../141-libpciaccess0_0.17-3+b3_amd64.deb ...
Unpacking libpciaccess0:amd64 (0.17-3+b3) ...
Selecting previously unselected package libdrm-intel1:amd64.
Preparing to unpack .../142-libdrm-intel1_2.4.124-1_amd64.deb ...
Unpacking libdrm-intel1:amd64 (2.4.124-1) ...
Selecting previously unselected package libedit2:amd64.
Preparing to unpack .../143-libedit2_3.1-20250104-1_amd64.deb ...
Unpacking libedit2:amd64 (3.1-20250104-1) ...
Selecting previously unselected package libz3-4:amd64.
Preparing to unpack .../144-libz3-4_4.13.3-1_amd64.deb ...
Unpacking libz3-4:amd64 (4.13.3-1) ...
Selecting previously unselected package libllvm19:amd64.
Preparing to unpack .../145-libllvm19_1%3a19.1.7-3_amd64.deb ...
Unpacking libllvm19:amd64 (1:19.1.7-3) ...
Selecting previously unselected package libsensors-config.
Preparing to unpack .../146-libsensors-config_1%3a3.6.0-10_all.deb ...
Unpacking libsensors-config (1:3.6.0-10) ...
Selecting previously unselected package libsensors5:amd64.
Preparing to unpack .../147-libsensors5_1%3a3.6.0-10+b1_amd64.deb ...
Unpacking libsensors5:amd64 (1:3.6.0-10+b1) ...
Selecting previously unselected package libxcb-randr0:amd64.
Preparing to unpack .../148-libxcb-randr0_1.17.0-2+b1_amd64.deb ...
Unpacking libxcb-randr0:amd64 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-sync1:amd64.
Preparing to unpack .../149-libxcb-sync1_1.17.0-2+b1_amd64.deb ...
Unpacking libxcb-sync1:amd64 (1.17.0-2+b1) ...
Selecting previously unselected package libxshmfence1:amd64.
Preparing to unpack .../150-libxshmfence1_1.3.3-1_amd64.deb ...
Unpacking libxshmfence1:amd64 (1.3.3-1) ...
Selecting previously unselected package mesa-libgallium:amd64.
Preparing to unpack .../151-mesa-libgallium_25.0.2-1_amd64.deb ...
Unpacking mesa-libgallium:amd64 (25.0.2-1) ...
Selecting previously unselected package libwayland-server0:amd64.
Preparing to unpack .../152-libwayland-server0_1.23.1-3_amd64.deb ...
Unpacking libwayland-server0:amd64 (1.23.1-3) ...
Selecting previously unselected package libgbm1:amd64.
Preparing to unpack .../153-libgbm1_25.0.2-1_amd64.deb ...
Unpacking libgbm1:amd64 (25.0.2-1) ...
Selecting previously unselected package libvulkan1:amd64.
Preparing to unpack .../154-libvulkan1_1.4.309.0-1_amd64.deb ...
Unpacking libvulkan1:amd64 (1.4.309.0-1) ...
Selecting previously unselected package libgl1-mesa-dri:amd64.
Preparing to unpack .../155-libgl1-mesa-dri_25.0.2-1_amd64.deb ...
Unpacking libgl1-mesa-dri:amd64 (25.0.2-1) ...
Selecting previously unselected package libglx-mesa0:amd64.
Preparing to unpack .../156-libglx-mesa0_25.0.2-1_amd64.deb ...
Unpacking libglx-mesa0:amd64 (25.0.2-1) ...
Selecting previously unselected package libglx0:amd64.
Preparing to unpack .../157-libglx0_1.7.0-1+b2_amd64.deb ...
Unpacking libglx0:amd64 (1.7.0-1+b2) ...
Selecting previously unselected package libgl1:amd64.
Preparing to unpack .../158-libgl1_1.7.0-1+b2_amd64.deb ...
Unpacking libgl1:amd64 (1.7.0-1+b2) ...
Selecting previously unselected package libasound2-data.
Preparing to unpack .../159-libasound2-data_1.2.13-1_all.deb ...
Unpacking libasound2-data (1.2.13-1) ...
Selecting previously unselected package libasound2t64:amd64.
Preparing to unpack .../160-libasound2t64_1.2.13-1+b1_amd64.deb ...
Unpacking libasound2t64:amd64 (1.2.13-1+b1) ...
Selecting previously unselected package libgif7:amd64.
Preparing to unpack .../161-libgif7_5.2.2-1+b1_amd64.deb ...
Unpacking libgif7:amd64 (5.2.2-1+b1) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../162-x11-common_1%3a7.7+24_all.deb ...
Unpacking x11-common (1:7.7+24) ...
Selecting previously unselected package libxtst6:amd64.
Preparing to unpack .../163-libxtst6_2%3a1.2.5-1_amd64.deb ...
Unpacking libxtst6:amd64 (2:1.2.5-1) ...
Selecting previously unselected package openjdk-21-jre:amd64.
Preparing to unpack .../164-openjdk-21-jre_21.0.7~8ea-1_amd64.deb ...
Unpacking openjdk-21-jre:amd64 (21.0.7~8ea-1) ...
Selecting previously unselected package default-jre.
Preparing to unpack .../165-default-jre_2%3a1.21-76_amd64.deb ...
Unpacking default-jre (2:1.21-76) ...
Selecting previously unselected package openjdk-21-jdk-headless:amd64.
Preparing to unpack .../166-openjdk-21-jdk-headless_21.0.7~8ea-1_amd64.deb ...
Unpacking openjdk-21-jdk-headless:amd64 (21.0.7~8ea-1) ...
Selecting previously unselected package default-jdk-headless.
Preparing to unpack .../167-default-jdk-headless_2%3a1.21-76_amd64.deb ...
Unpacking default-jdk-headless (2:1.21-76) ...
Selecting previously unselected package openjdk-21-jdk:amd64.
Preparing to unpack .../168-openjdk-21-jdk_21.0.7~8ea-1_amd64.deb ...
Unpacking openjdk-21-jdk:amd64 (21.0.7~8ea-1) ...
Selecting previously unselected package default-jdk.
Preparing to unpack .../169-default-jdk_2%3a1.21-76_amd64.deb ...
Unpacking default-jdk (2:1.21-76) ...
Selecting previously unselected package fonts-lmodern.
Preparing to unpack .../170-fonts-lmodern_2.005-1_all.deb ...
Unpacking fonts-lmodern (2.005-1) ...
Selecting previously unselected package libgfortran5:amd64.
Preparing to unpack .../171-libgfortran5_14.2.0-19_amd64.deb ...
Unpacking libgfortran5:amd64 (14.2.0-19) ...
Selecting previously unselected package libgfortran-14-dev:amd64.
Preparing to unpack .../172-libgfortran-14-dev_14.2.0-19_amd64.deb ...
Unpacking libgfortran-14-dev:amd64 (14.2.0-19) ...
Selecting previously unselected package gfortran-14-x86-64-linux-gnu.
Preparing to unpack .../173-gfortran-14-x86-64-linux-gnu_14.2.0-19_amd64.deb ...
Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-19) ...
Selecting previously unselected package gfortran-14.
Preparing to unpack .../174-gfortran-14_14.2.0-19_amd64.deb ...
Unpacking gfortran-14 (14.2.0-19) ...
Selecting previously unselected package gfortran-x86-64-linux-gnu.
Preparing to unpack .../175-gfortran-x86-64-linux-gnu_4%3a14.2.0-1_amd64.deb ...
Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../176-gfortran_4%3a14.2.0-1_amd64.deb ...
Unpacking gfortran (4:14.2.0-1) ...
Selecting previously unselected package gir1.2-glib-2.0:amd64.
Preparing to unpack .../177-gir1.2-glib-2.0_2.84.0-2_amd64.deb ...
Unpacking gir1.2-glib-2.0:amd64 (2.84.0-2) ...
Selecting previously unselected package gir1.2-freedesktop:amd64.
Preparing to unpack .../178-gir1.2-freedesktop_1.84.0-1_amd64.deb ...
Unpacking gir1.2-freedesktop:amd64 (1.84.0-1) ...
Selecting previously unselected package gir1.2-glib-2.0-dev:amd64.
Preparing to unpack .../179-gir1.2-glib-2.0-dev_2.84.0-2_amd64.deb ...
Unpacking gir1.2-glib-2.0-dev:amd64 (2.84.0-2) ...
Selecting previously unselected package gir1.2-freedesktop-dev:amd64.
Preparing to unpack .../180-gir1.2-freedesktop-dev_1.84.0-1_amd64.deb ...
Unpacking gir1.2-freedesktop-dev:amd64 (1.84.0-1) ...
Selecting previously unselected package libharfbuzz-gobject0:amd64.
Preparing to unpack .../181-libharfbuzz-gobject0_10.2.0-1+b1_amd64.deb ...
Unpacking libharfbuzz-gobject0:amd64 (10.2.0-1+b1) ...
Selecting previously unselected package gir1.2-harfbuzz-0.0:amd64.
Preparing to unpack .../182-gir1.2-harfbuzz-0.0_10.2.0-1+b1_amd64.deb ...
Unpacking gir1.2-harfbuzz-0.0:amd64 (10.2.0-1+b1) ...
Selecting previously unselected package libxft2:amd64.
Preparing to unpack .../183-libxft2_2.3.6-1+b4_amd64.deb ...
Unpacking libxft2:amd64 (2.3.6-1+b4) ...
Selecting previously unselected package libpangoxft-1.0-0:amd64.
Preparing to unpack .../184-libpangoxft-1.0-0_1.56.3-1_amd64.deb ...
Unpacking libpangoxft-1.0-0:amd64 (1.56.3-1) ...
Selecting previously unselected package gir1.2-pango-1.0:amd64.
Preparing to unpack .../185-gir1.2-pango-1.0_1.56.3-1_amd64.deb ...
Unpacking gir1.2-pango-1.0:amd64 (1.56.3-1) ...
Selecting previously unselected package native-architecture.
Preparing to unpack .../186-native-architecture_0.2.6_all.deb ...
Unpacking native-architecture (0.2.6) ...
Selecting previously unselected package libgirepository-2.0-0:amd64.
Preparing to unpack .../187-libgirepository-2.0-0_2.84.0-2_amd64.deb ...
Unpacking libgirepository-2.0-0:amd64 (2.84.0-2) ...
Selecting previously unselected package girepository-tools:amd64.
Preparing to unpack .../188-girepository-tools_2.84.0-2_amd64.deb ...
Unpacking girepository-tools:amd64 (2.84.0-2) ...
Selecting previously unselected package libicu76:amd64.
Preparing to unpack .../189-libicu76_76.1-3_amd64.deb ...
Unpacking libicu76:amd64 (76.1-3) ...
Selecting previously unselected package icu-devtools.
Preparing to unpack .../190-icu-devtools_76.1-3_amd64.deb ...
Unpacking icu-devtools (76.1-3) ...
Selecting previously unselected package libgssrpc4t64:amd64.
Preparing to unpack .../191-libgssrpc4t64_1.21.3-5_amd64.deb ...
Unpacking libgssrpc4t64:amd64 (1.21.3-5) ...
Selecting previously unselected package libkadm5clnt-mit12:amd64.
Preparing to unpack .../192-libkadm5clnt-mit12_1.21.3-5_amd64.deb ...
Unpacking libkadm5clnt-mit12:amd64 (1.21.3-5) ...
Selecting previously unselected package libkdb5-10t64:amd64.
Preparing to unpack .../193-libkdb5-10t64_1.21.3-5_amd64.deb ...
Unpacking libkdb5-10t64:amd64 (1.21.3-5) ...
Selecting previously unselected package libkadm5srv-mit12:amd64.
Preparing to unpack .../194-libkadm5srv-mit12_1.21.3-5_amd64.deb ...
Unpacking libkadm5srv-mit12:amd64 (1.21.3-5) ...
Selecting previously unselected package krb5-multidev:amd64.
Preparing to unpack .../195-krb5-multidev_1.21.3-5_amd64.deb ...
Unpacking krb5-multidev:amd64 (1.21.3-5) ...
Selecting previously unselected package libapache-pom-java.
Preparing to unpack .../196-libapache-pom-java_33-2_all.deb ...
Unpacking libapache-pom-java (33-2) ...
Selecting previously unselected package libblas3:amd64.
Preparing to unpack .../197-libblas3_3.12.1-2_amd64.deb ...
Unpacking libblas3:amd64 (3.12.1-2) ...
Selecting previously unselected package libblas-dev:amd64.
Preparing to unpack .../198-libblas-dev_3.12.1-2_amd64.deb ...
Unpacking libblas-dev:amd64 (3.12.1-2) ...
Selecting previously unselected package uuid-dev:amd64.
Preparing to unpack .../199-uuid-dev_2.40.4-5_amd64.deb ...
Unpacking uuid-dev:amd64 (2.40.4-5) ...
Selecting previously unselected package libblkid-dev:amd64.
Preparing to unpack .../200-libblkid-dev_2.40.4-5_amd64.deb ...
Unpacking libblkid-dev:amd64 (2.40.4-5) ...
Selecting previously unselected package libbrotli-dev:amd64.
Preparing to unpack .../201-libbrotli-dev_1.1.0-2+b7_amd64.deb ...
Unpacking libbrotli-dev:amd64 (1.1.0-2+b7) ...
Selecting previously unselected package libbz2-dev:amd64.
Preparing to unpack .../202-libbz2-dev_1.0.8-6_amd64.deb ...
Unpacking libbz2-dev:amd64 (1.0.8-6) ...
Selecting previously unselected package liblzo2-2:amd64.
Preparing to unpack .../203-liblzo2-2_2.10-3+b1_amd64.deb ...
Unpacking liblzo2-2:amd64 (2.10-3+b1) ...
Selecting previously unselected package libcairo-script-interpreter2:amd64.
Preparing to unpack .../204-libcairo-script-interpreter2_1.18.4-1+b1_amd64.deb ...
Unpacking libcairo-script-interpreter2:amd64 (1.18.4-1+b1) ...
Selecting previously unselected package libexpat1-dev:amd64.
Preparing to unpack .../205-libexpat1-dev_2.7.1-1_amd64.deb ...
Unpacking libexpat1-dev:amd64 (2.7.1-1) ...
Selecting previously unselected package zlib1g-dev:amd64.
Preparing to unpack .../206-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ...
Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Selecting previously unselected package libpng-dev:amd64.
Preparing to unpack .../207-libpng-dev_1.6.47-1.1_amd64.deb ...
Unpacking libpng-dev:amd64 (1.6.47-1.1) ...
Selecting previously unselected package libfreetype-dev:amd64.
Preparing to unpack .../208-libfreetype-dev_2.13.3+dfsg-1_amd64.deb ...
Unpacking libfreetype-dev:amd64 (2.13.3+dfsg-1) ...
Selecting previously unselected package libpkgconf3:amd64.
Preparing to unpack .../209-libpkgconf3_1.8.1-4_amd64.deb ...
Unpacking libpkgconf3:amd64 (1.8.1-4) ...
Selecting previously unselected package pkgconf-bin.
Preparing to unpack .../210-pkgconf-bin_1.8.1-4_amd64.deb ...
Unpacking pkgconf-bin (1.8.1-4) ...
Selecting previously unselected package pkgconf:amd64.
Preparing to unpack .../211-pkgconf_1.8.1-4_amd64.deb ...
Unpacking pkgconf:amd64 (1.8.1-4) ...
Selecting previously unselected package libfontconfig-dev:amd64.
Preparing to unpack .../212-libfontconfig-dev_2.15.0-2.2_amd64.deb ...
Unpacking libfontconfig-dev:amd64 (2.15.0-2.2) ...
Selecting previously unselected package libffi-dev:amd64.
Preparing to unpack .../213-libffi-dev_3.4.7-1_amd64.deb ...
Unpacking libffi-dev:amd64 (3.4.7-1) ...
Selecting previously unselected package libsepol-dev:amd64.
Preparing to unpack .../214-libsepol-dev_3.8.1-1_amd64.deb ...
Unpacking libsepol-dev:amd64 (3.8.1-1) ...
Selecting previously unselected package libpcre2-16-0:amd64.
Preparing to unpack .../215-libpcre2-16-0_10.45-1_amd64.deb ...
Unpacking libpcre2-16-0:amd64 (10.45-1) ...
Selecting previously unselected package libpcre2-32-0:amd64.
Preparing to unpack .../216-libpcre2-32-0_10.45-1_amd64.deb ...
Unpacking libpcre2-32-0:amd64 (10.45-1) ...
Selecting previously unselected package libpcre2-posix3:amd64.
Preparing to unpack .../217-libpcre2-posix3_10.45-1_amd64.deb ...
Unpacking libpcre2-posix3:amd64 (10.45-1) ...
Selecting previously unselected package libpcre2-dev:amd64.
Preparing to unpack .../218-libpcre2-dev_10.45-1_amd64.deb ...
Unpacking libpcre2-dev:amd64 (10.45-1) ...
Selecting previously unselected package libselinux1-dev:amd64.
Preparing to unpack .../219-libselinux1-dev_3.8.1-1_amd64.deb ...
Unpacking libselinux1-dev:amd64 (3.8.1-1) ...
Selecting previously unselected package libmount-dev:amd64.
Preparing to unpack .../220-libmount-dev_2.40.4-5_amd64.deb ...
Unpacking libmount-dev:amd64 (2.40.4-5) ...
Selecting previously unselected package libsysprof-capture-4-dev:amd64.
Preparing to unpack .../221-libsysprof-capture-4-dev_48.0-2_amd64.deb ...
Unpacking libsysprof-capture-4-dev:amd64 (48.0-2) ...
Selecting previously unselected package libgio-2.0-dev:amd64.
Preparing to unpack .../222-libgio-2.0-dev_2.84.0-2_amd64.deb ...
Unpacking libgio-2.0-dev:amd64 (2.84.0-2) ...
Selecting previously unselected package libglib2.0-data.
Preparing to unpack .../223-libglib2.0-data_2.84.0-2_all.deb ...
Unpacking libglib2.0-data (2.84.0-2) ...
Selecting previously unselected package libglib2.0-bin.
Preparing to unpack .../224-libglib2.0-bin_2.84.0-2_amd64.deb ...
Unpacking libglib2.0-bin (2.84.0-2) ...
Selecting previously unselected package python3-packaging.
Preparing to unpack .../225-python3-packaging_24.2-1_all.deb ...
Unpacking python3-packaging (24.2-1) ...
Selecting previously unselected package libgio-2.0-dev-bin.
Preparing to unpack .../226-libgio-2.0-dev-bin_2.84.0-2_amd64.deb ...
Unpacking libgio-2.0-dev-bin (2.84.0-2) ...
Selecting previously unselected package libglib2.0-dev-bin.
Preparing to unpack .../227-libglib2.0-dev-bin_2.84.0-2_amd64.deb ...
Unpacking libglib2.0-dev-bin (2.84.0-2) ...
Selecting previously unselected package libglib2.0-dev:amd64.
Preparing to unpack .../228-libglib2.0-dev_2.84.0-2_amd64.deb ...
Unpacking libglib2.0-dev:amd64 (2.84.0-2) ...
Selecting previously unselected package libpixman-1-dev:amd64.
Preparing to unpack .../229-libpixman-1-dev_0.44.0-3_amd64.deb ...
Unpacking libpixman-1-dev:amd64 (0.44.0-3) ...
Selecting previously unselected package libice6:amd64.
Preparing to unpack .../230-libice6_2%3a1.1.1-1_amd64.deb ...
Unpacking libice6:amd64 (2:1.1.1-1) ...
Selecting previously unselected package libsm6:amd64.
Preparing to unpack .../231-libsm6_2%3a1.2.6-1_amd64.deb ...
Unpacking libsm6:amd64 (2:1.2.6-1) ...
Selecting previously unselected package xorg-sgml-doctools.
Preparing to unpack .../232-xorg-sgml-doctools_1%3a1.11-1.1_all.deb ...
Unpacking xorg-sgml-doctools (1:1.11-1.1) ...
Selecting previously unselected package x11proto-dev.
Preparing to unpack .../233-x11proto-dev_2024.1-1_all.deb ...
Unpacking x11proto-dev (2024.1-1) ...
Selecting previously unselected package libice-dev:amd64.
Preparing to unpack .../234-libice-dev_2%3a1.1.1-1_amd64.deb ...
Unpacking libice-dev:amd64 (2:1.1.1-1) ...
Selecting previously unselected package libsm-dev:amd64.
Preparing to unpack .../235-libsm-dev_2%3a1.2.6-1_amd64.deb ...
Unpacking libsm-dev:amd64 (2:1.2.6-1) ...
Selecting previously unselected package libxau-dev:amd64.
Preparing to unpack .../236-libxau-dev_1%3a1.0.11-1_amd64.deb ...
Unpacking libxau-dev:amd64 (1:1.0.11-1) ...
Selecting previously unselected package libxdmcp-dev:amd64.
Preparing to unpack .../237-libxdmcp-dev_1%3a1.1.5-1_amd64.deb ...
Unpacking libxdmcp-dev:amd64 (1:1.1.5-1) ...
Selecting previously unselected package xtrans-dev.
Preparing to unpack .../238-xtrans-dev_1.4.0-1_all.deb ...
Unpacking xtrans-dev (1.4.0-1) ...
Selecting previously unselected package libxcb1-dev:amd64.
Preparing to unpack .../239-libxcb1-dev_1.17.0-2+b1_amd64.deb ...
Unpacking libxcb1-dev:amd64 (1.17.0-2+b1) ...
Selecting previously unselected package libx11-dev:amd64.
Preparing to unpack .../240-libx11-dev_2%3a1.8.12-1_amd64.deb ...
Unpacking libx11-dev:amd64 (2:1.8.12-1) ...
Selecting previously unselected package libxcb-render0-dev:amd64.
Preparing to unpack .../241-libxcb-render0-dev_1.17.0-2+b1_amd64.deb ...
Unpacking libxcb-render0-dev:amd64 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-shm0-dev:amd64.
Preparing to unpack .../242-libxcb-shm0-dev_1.17.0-2+b1_amd64.deb ...
Unpacking libxcb-shm0-dev:amd64 (1.17.0-2+b1) ...
Selecting previously unselected package libxext-dev:amd64.
Preparing to unpack .../243-libxext-dev_2%3a1.3.4-1+b3_amd64.deb ...
Unpacking libxext-dev:amd64 (2:1.3.4-1+b3) ...
Selecting previously unselected package libxrender-dev:amd64.
Preparing to unpack .../244-libxrender-dev_1%3a0.9.12-1_amd64.deb ...
Unpacking libxrender-dev:amd64 (1:0.9.12-1) ...
Selecting previously unselected package libcairo2-dev:amd64.
Preparing to unpack .../245-libcairo2-dev_1.18.4-1+b1_amd64.deb ...
Unpacking libcairo2-dev:amd64 (1.18.4-1+b1) ...
Selecting previously unselected package libcommons-parent-java.
Preparing to unpack .../246-libcommons-parent-java_56-1_all.deb ...
Unpacking libcommons-parent-java (56-1) ...
Selecting previously unselected package libcommons-logging-java.
Preparing to unpack .../247-libcommons-logging-java_1.3.0-1_all.deb ...
Unpacking libcommons-logging-java (1.3.0-1) ...
Selecting previously unselected package libsasl2-modules-db:amd64.
Preparing to unpack .../248-libsasl2-modules-db_2.1.28+dfsg1-9_amd64.deb ...
Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ...
Selecting previously unselected package libsasl2-2:amd64.
Preparing to unpack .../249-libsasl2-2_2.1.28+dfsg1-9_amd64.deb ...
Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-9) ...
Selecting previously unselected package libldap2:amd64.
Preparing to unpack .../250-libldap2_2.6.9+dfsg-2_amd64.deb ...
Unpacking libldap2:amd64 (2.6.9+dfsg-2) ...
Selecting previously unselected package libnghttp2-14:amd64.
Preparing to unpack .../251-libnghttp2-14_1.64.0-1_amd64.deb ...
Unpacking libnghttp2-14:amd64 (1.64.0-1) ...
Selecting previously unselected package libnghttp3-9:amd64.
Preparing to unpack .../252-libnghttp3-9_1.8.0-1_amd64.deb ...
Unpacking libnghttp3-9:amd64 (1.8.0-1) ...
Selecting previously unselected package libpsl5t64:amd64.
Preparing to unpack .../253-libpsl5t64_0.21.2-1.1+b1_amd64.deb ...
Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Selecting previously unselected package librtmp1:amd64.
Preparing to unpack .../254-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ...
Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Selecting previously unselected package libssh2-1t64:amd64.
Preparing to unpack .../255-libssh2-1t64_1.11.1-1_amd64.deb ...
Unpacking libssh2-1t64:amd64 (1.11.1-1) ...
Selecting previously unselected package libcurl4t64:amd64.
Preparing to unpack .../256-libcurl4t64_8.13.0~rc3-1_amd64.deb ...
Unpacking libcurl4t64:amd64 (8.13.0~rc3-1) ...
Selecting previously unselected package libidn2-dev:amd64.
Preparing to unpack .../257-libidn2-dev_2.3.8-2_amd64.deb ...
Unpacking libidn2-dev:amd64 (2.3.8-2) ...
Selecting previously unselected package libkrb5-dev:amd64.
Preparing to unpack .../258-libkrb5-dev_1.21.3-5_amd64.deb ...
Unpacking libkrb5-dev:amd64 (1.21.3-5) ...
Selecting previously unselected package libldap-dev:amd64.
Preparing to unpack .../259-libldap-dev_2.6.9+dfsg-2_amd64.deb ...
Unpacking libldap-dev:amd64 (2.6.9+dfsg-2) ...
Selecting previously unselected package libnghttp2-dev:amd64.
Preparing to unpack .../260-libnghttp2-dev_1.64.0-1_amd64.deb ...
Unpacking libnghttp2-dev:amd64 (1.64.0-1) ...
Selecting previously unselected package libnghttp3-dev:amd64.
Preparing to unpack .../261-libnghttp3-dev_1.8.0-1_amd64.deb ...
Unpacking libnghttp3-dev:amd64 (1.8.0-1) ...
Selecting previously unselected package libpsl-dev:amd64.
Preparing to unpack .../262-libpsl-dev_0.21.2-1.1+b1_amd64.deb ...
Unpacking libpsl-dev:amd64 (0.21.2-1.1+b1) ...
Selecting previously unselected package libgmpxx4ldbl:amd64.
Preparing to unpack .../263-libgmpxx4ldbl_2%3a6.3.0+dfsg-3_amd64.deb ...
Unpacking libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-3) ...
Selecting previously unselected package libgmp-dev:amd64.
Preparing to unpack .../264-libgmp-dev_2%3a6.3.0+dfsg-3_amd64.deb ...
Unpacking libgmp-dev:amd64 (2:6.3.0+dfsg-3) ...
Selecting previously unselected package libevent-2.1-7t64:amd64.
Preparing to unpack .../265-libevent-2.1-7t64_2.1.12-stable-10+b1_amd64.deb ...
Unpacking libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ...
Selecting previously unselected package libunbound8:amd64.
Preparing to unpack .../266-libunbound8_1.22.0-1+b1_amd64.deb ...
Unpacking libunbound8:amd64 (1.22.0-1+b1) ...
Selecting previously unselected package libgnutls-dane0t64:amd64.
Preparing to unpack .../267-libgnutls-dane0t64_3.8.9-2_amd64.deb ...
Unpacking libgnutls-dane0t64:amd64 (3.8.9-2) ...
Selecting previously unselected package libgnutls-openssl27t64:amd64.
Preparing to unpack .../268-libgnutls-openssl27t64_3.8.9-2_amd64.deb ...
Unpacking libgnutls-openssl27t64:amd64 (3.8.9-2) ...
Selecting previously unselected package libp11-kit-dev:amd64.
Preparing to unpack .../269-libp11-kit-dev_0.25.5-3_amd64.deb ...
Unpacking libp11-kit-dev:amd64 (0.25.5-3) ...
Selecting previously unselected package libtasn1-6-dev:amd64.
Preparing to unpack .../270-libtasn1-6-dev_4.20.0-2_amd64.deb ...
Unpacking libtasn1-6-dev:amd64 (4.20.0-2) ...
Selecting previously unselected package nettle-dev:amd64.
Preparing to unpack .../271-nettle-dev_3.10.1-1_amd64.deb ...
Unpacking nettle-dev:amd64 (3.10.1-1) ...
Selecting previously unselected package libgnutls28-dev:amd64.
Preparing to unpack .../272-libgnutls28-dev_3.8.9-2_amd64.deb ...
Unpacking libgnutls28-dev:amd64 (3.8.9-2) ...
Selecting previously unselected package librtmp-dev:amd64.
Preparing to unpack .../273-librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ...
Unpacking librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Selecting previously unselected package libssl-dev:amd64.
Preparing to unpack .../274-libssl-dev_3.4.1-1_amd64.deb ...
Unpacking libssl-dev:amd64 (3.4.1-1) ...
Selecting previously unselected package libssh2-1-dev:amd64.
Preparing to unpack .../275-libssh2-1-dev_1.11.1-1_amd64.deb ...
Unpacking libssh2-1-dev:amd64 (1.11.1-1) ...
Selecting previously unselected package libzstd-dev:amd64.
Preparing to unpack .../276-libzstd-dev_1.5.7+dfsg-1_amd64.deb ...
Unpacking libzstd-dev:amd64 (1.5.7+dfsg-1) ...
Selecting previously unselected package libcurl4-openssl-dev:amd64.
Preparing to unpack .../277-libcurl4-openssl-dev_8.13.0~rc3-1_amd64.deb ...
Unpacking libcurl4-openssl-dev:amd64 (8.13.0~rc3-1) ...
Selecting previously unselected package libdatrie-dev:amd64.
Preparing to unpack .../278-libdatrie-dev_0.2.13-3+b1_amd64.deb ...
Unpacking libdatrie-dev:amd64 (0.2.13-3+b1) ...
Selecting previously unselected package libdeflate-dev:amd64.
Preparing to unpack .../279-libdeflate-dev_1.23-1+b1_amd64.deb ...
Unpacking libdeflate-dev:amd64 (1.23-1+b1) ...
Selecting previously unselected package libfile-which-perl.
Preparing to unpack .../280-libfile-which-perl_1.27-2_all.deb ...
Unpacking libfile-which-perl (1.27-2) ...
Selecting previously unselected package libfile-homedir-perl.
Preparing to unpack .../281-libfile-homedir-perl_1.006-2_all.deb ...
Unpacking libfile-homedir-perl (1.006-2) ...
Selecting previously unselected package libfontbox-java.
Preparing to unpack .../282-libfontbox-java_1%3a1.8.16-5_all.deb ...
Unpacking libfontbox-java (1:1.8.16-5) ...
Selecting previously unselected package libfontconfig1-dev:amd64.
Preparing to unpack .../283-libfontconfig1-dev_2.15.0-2.2_amd64.deb ...
Unpacking libfontconfig1-dev:amd64 (2.15.0-2.2) ...
Selecting previously unselected package libfontenc1:amd64.
Preparing to unpack .../284-libfontenc1_1%3a1.1.8-1+b2_amd64.deb ...
Unpacking libfontenc1:amd64 (1:1.1.8-1+b2) ...
Selecting previously unselected package libfribidi-dev:amd64.
Preparing to unpack .../285-libfribidi-dev_1.0.16-1_amd64.deb ...
Unpacking libfribidi-dev:amd64 (1.0.16-1) ...
Selecting previously unselected package libgraphite2-dev:amd64.
Preparing to unpack .../286-libgraphite2-dev_1.3.14-2+b1_amd64.deb ...
Unpacking libgraphite2-dev:amd64 (1.3.14-2+b1) ...
Selecting previously unselected package libharfbuzz-cairo0:amd64.
Preparing to unpack .../287-libharfbuzz-cairo0_10.2.0-1+b1_amd64.deb ...
Unpacking libharfbuzz-cairo0:amd64 (10.2.0-1+b1) ...
Selecting previously unselected package libharfbuzz-icu0:amd64.
Preparing to unpack .../288-libharfbuzz-icu0_10.2.0-1+b1_amd64.deb ...
Unpacking libharfbuzz-icu0:amd64 (10.2.0-1+b1) ...
Selecting previously unselected package libharfbuzz-subset0:amd64.
Preparing to unpack .../289-libharfbuzz-subset0_10.2.0-1+b1_amd64.deb ...
Unpacking libharfbuzz-subset0:amd64 (10.2.0-1+b1) ...
Selecting previously unselected package libicu-dev:amd64.
Preparing to unpack .../290-libicu-dev_76.1-3_amd64.deb ...
Unpacking libicu-dev:amd64 (76.1-3) ...
Selecting previously unselected package libharfbuzz-dev:amd64.
Preparing to unpack .../291-libharfbuzz-dev_10.2.0-1+b1_amd64.deb ...
Unpacking libharfbuzz-dev:amd64 (10.2.0-1+b1) ...
Selecting previously unselected package libjbig-dev:amd64.
Preparing to unpack .../292-libjbig-dev_2.1-6.1+b2_amd64.deb ...
Unpacking libjbig-dev:amd64 (2.1-6.1+b2) ...
Selecting previously unselected package libjpeg62-turbo-dev:amd64.
Preparing to unpack .../293-libjpeg62-turbo-dev_1%3a2.1.5-3.1_amd64.deb ...
Unpacking libjpeg62-turbo-dev:amd64 (1:2.1.5-3.1) ...
Selecting previously unselected package libjpeg-dev:amd64.
Preparing to unpack .../294-libjpeg-dev_1%3a2.1.5-3.1_amd64.deb ...
Unpacking libjpeg-dev:amd64 (1:2.1.5-3.1) ...
Selecting previously unselected package libjs-jquery.
Preparing to unpack .../295-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Selecting previously unselected package libkpathsea6:amd64.
Preparing to unpack .../296-libkpathsea6_2024.20240313.70630+ds-6_amd64.deb ...
Unpacking libkpathsea6:amd64 (2024.20240313.70630+ds-6) ...
Selecting previously unselected package liblapack3:amd64.
Preparing to unpack .../297-liblapack3_3.12.1-2_amd64.deb ...
Unpacking liblapack3:amd64 (3.12.1-2) ...
Selecting previously unselected package liblapack-dev:amd64.
Preparing to unpack .../298-liblapack-dev_3.12.1-2_amd64.deb ...
Unpacking liblapack-dev:amd64 (3.12.1-2) ...
Selecting previously unselected package liblerc-dev:amd64.
Preparing to unpack .../299-liblerc-dev_4.0.0+ds-5_amd64.deb ...
Unpacking liblerc-dev:amd64 (4.0.0+ds-5) ...
Selecting previously unselected package liblzma-dev:amd64.
Preparing to unpack .../300-liblzma-dev_5.6.4-1_amd64.deb ...
Unpacking liblzma-dev:amd64 (5.6.4-1) ...
Selecting previously unselected package libmime-charset-perl.
Preparing to unpack .../301-libmime-charset-perl_1.013.1-2_all.deb ...
Unpacking libmime-charset-perl (1.013.1-2) ...
Selecting previously unselected package libmpfi0:amd64.
Preparing to unpack .../302-libmpfi0_1.5.4+ds-4_amd64.deb ...
Unpacking libmpfi0:amd64 (1.5.4+ds-4) ...
Selecting previously unselected package libncurses6:amd64.
Preparing to unpack .../303-libncurses6_6.5+20250216-2_amd64.deb ...
Unpacking libncurses6:amd64 (6.5+20250216-2) ...
Selecting previously unselected package libncurses-dev:amd64.
Preparing to unpack .../304-libncurses-dev_6.5+20250216-2_amd64.deb ...
Unpacking libncurses-dev:amd64 (6.5+20250216-2) ...
Selecting previously unselected package libthai-dev:amd64.
Preparing to unpack .../305-libthai-dev_0.1.29-2+b1_amd64.deb ...
Unpacking libthai-dev:amd64 (0.1.29-2+b1) ...
Selecting previously unselected package libxft-dev:amd64.
Preparing to unpack .../306-libxft-dev_2.3.6-1+b4_amd64.deb ...
Unpacking libxft-dev:amd64 (2.3.6-1+b4) ...
Selecting previously unselected package pango1.0-tools.
Preparing to unpack .../307-pango1.0-tools_1.56.3-1_amd64.deb ...
Unpacking pango1.0-tools (1.56.3-1) ...
Selecting previously unselected package libpango1.0-dev:amd64.
Preparing to unpack .../308-libpango1.0-dev_1.56.3-1_amd64.deb ...
Unpacking libpango1.0-dev:amd64 (1.56.3-1) ...
Selecting previously unselected package libpaper2:amd64.
Preparing to unpack .../309-libpaper2_2.2.5-0.3+b1_amd64.deb ...
Unpacking libpaper2:amd64 (2.2.5-0.3+b1) ...
Selecting previously unselected package libpaper-utils.
Preparing to unpack .../310-libpaper-utils_2.2.5-0.3+b1_amd64.deb ...
Unpacking libpaper-utils (2.2.5-0.3+b1) ...
Selecting previously unselected package libpdfbox-java.
Preparing to unpack .../311-libpdfbox-java_1%3a1.8.16-5_all.deb ...
Unpacking libpdfbox-java (1:1.8.16-5) ...
Selecting previously unselected package libpotrace0:amd64.
Preparing to unpack .../312-libpotrace0_1.16-2+b2_amd64.deb ...
Unpacking libpotrace0:amd64 (1.16-2+b2) ...
Selecting previously unselected package libptexenc1:amd64.
Preparing to unpack .../313-libptexenc1_2024.20240313.70630+ds-6_amd64.deb ...
Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-6) ...
Selecting previously unselected package libreadline-dev:amd64.
Preparing to unpack .../314-libreadline-dev_8.2-6_amd64.deb ...
Unpacking libreadline-dev:amd64 (8.2-6) ...
Selecting previously unselected package libsharpyuv-dev:amd64.
Preparing to unpack .../315-libsharpyuv-dev_1.5.0-0.1_amd64.deb ...
Unpacking libsharpyuv-dev:amd64 (1.5.0-0.1) ...
Selecting previously unselected package libsombok3:amd64.
Preparing to unpack .../316-libsombok3_2.4.0-2+b2_amd64.deb ...
Unpacking libsombok3:amd64 (2.4.0-2+b2) ...
Selecting previously unselected package libsynctex2:amd64.
Preparing to unpack .../317-libsynctex2_2024.20240313.70630+ds-6_amd64.deb ...
Unpacking libsynctex2:amd64 (2024.20240313.70630+ds-6) ...
Selecting previously unselected package libtcl8.6:amd64.
Preparing to unpack .../318-libtcl8.6_8.6.16+dfsg-1_amd64.deb ...
Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ...
Selecting previously unselected package libteckit0:amd64.
Preparing to unpack .../319-libteckit0_2.5.12+ds1-1+b1_amd64.deb ...
Unpacking libteckit0:amd64 (2.5.12+ds1-1+b1) ...
Selecting previously unselected package libtexlua53-5:amd64.
Preparing to unpack .../320-libtexlua53-5_2024.20240313.70630+ds-6_amd64.deb ...
Unpacking libtexlua53-5:amd64 (2024.20240313.70630+ds-6) ...
Selecting previously unselected package libtext-unidecode-perl.
Preparing to unpack .../321-libtext-unidecode-perl_1.30-3_all.deb ...
Unpacking libtext-unidecode-perl (1.30-3) ...
Selecting previously unselected package libwebpdemux2:amd64.
Preparing to unpack .../322-libwebpdemux2_1.5.0-0.1_amd64.deb ...
Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ...
Selecting previously unselected package libwebpmux3:amd64.
Preparing to unpack .../323-libwebpmux3_1.5.0-0.1_amd64.deb ...
Unpacking libwebpmux3:amd64 (1.5.0-0.1) ...
Selecting previously unselected package libwebpdecoder3:amd64.
Preparing to unpack .../324-libwebpdecoder3_1.5.0-0.1_amd64.deb ...
Unpacking libwebpdecoder3:amd64 (1.5.0-0.1) ...
Selecting previously unselected package libwebp-dev:amd64.
Preparing to unpack .../325-libwebp-dev_1.5.0-0.1_amd64.deb ...
Unpacking libwebp-dev:amd64 (1.5.0-0.1) ...
Selecting previously unselected package libtiffxx6:amd64.
Preparing to unpack .../326-libtiffxx6_4.7.0-2_amd64.deb ...
Unpacking libtiffxx6:amd64 (4.7.0-2) ...
Selecting previously unselected package libtiff-dev:amd64.
Preparing to unpack .../327-libtiff-dev_4.7.0-2_amd64.deb ...
Unpacking libtiff-dev:amd64 (4.7.0-2) ...
Selecting previously unselected package libtirpc-common.
Preparing to unpack .../328-libtirpc-common_1.3.6+ds-1_all.deb ...
Unpacking libtirpc-common (1.3.6+ds-1) ...
Selecting previously unselected package libtirpc3t64:amd64.
Preparing to unpack .../329-libtirpc3t64_1.3.6+ds-1_amd64.deb ...
Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
Unpacking libtirpc3t64:amd64 (1.3.6+ds-1) ...
Selecting previously unselected package libtirpc-dev:amd64.
Preparing to unpack .../330-libtirpc-dev_1.3.6+ds-1_amd64.deb ...
Unpacking libtirpc-dev:amd64 (1.3.6+ds-1) ...
Selecting previously unselected package libxss1:amd64.
Preparing to unpack .../331-libxss1_1%3a1.2.3-1+b3_amd64.deb ...
Unpacking libxss1:amd64 (1:1.2.3-1+b3) ...
Selecting previously unselected package libtk8.6:amd64.
Preparing to unpack .../332-libtk8.6_8.6.16-1_amd64.deb ...
Unpacking libtk8.6:amd64 (8.6.16-1) ...
Selecting previously unselected package libunicode-linebreak-perl.
Preparing to unpack .../333-libunicode-linebreak-perl_0.0.20190101-1+b9_amd64.deb ...
Unpacking libunicode-linebreak-perl (0.0.20190101-1+b9) ...
Selecting previously unselected package libunwind8:amd64.
Preparing to unpack .../334-libunwind8_1.8.1-0.1_amd64.deb ...
Unpacking libunwind8:amd64 (1.8.1-0.1) ...
Selecting previously unselected package libxt6t64:amd64.
Preparing to unpack .../335-libxt6t64_1%3a1.2.1-1.2+b2_amd64.deb ...
Unpacking libxt6t64:amd64 (1:1.2.1-1.2+b2) ...
Selecting previously unselected package libxmu6:amd64.
Preparing to unpack .../336-libxmu6_2%3a1.1.3-3+b4_amd64.deb ...
Unpacking libxmu6:amd64 (2:1.1.3-3+b4) ...
Selecting previously unselected package libxpm4:amd64.
Preparing to unpack .../337-libxpm4_1%3a3.5.17-1+b3_amd64.deb ...
Unpacking libxpm4:amd64 (1:3.5.17-1+b3) ...
Selecting previously unselected package libxaw7:amd64.
Preparing to unpack .../338-libxaw7_2%3a1.0.16-1_amd64.deb ...
Unpacking libxaw7:amd64 (2:1.0.16-1) ...
Selecting previously unselected package libxfont2:amd64.
Preparing to unpack .../339-libxfont2_1%3a2.0.6-1+b3_amd64.deb ...
Unpacking libxfont2:amd64 (1:2.0.6-1+b3) ...
Selecting previously unselected package libxkbfile1:amd64.
Preparing to unpack .../340-libxkbfile1_1%3a1.1.0-1+b4_amd64.deb ...
Unpacking libxkbfile1:amd64 (1:1.1.0-1+b4) ...
Selecting previously unselected package libxml-namespacesupport-perl.
Preparing to unpack .../341-libxml-namespacesupport-perl_1.12-2_all.deb ...
Unpacking libxml-namespacesupport-perl (1.12-2) ...
Selecting previously unselected package libxml-sax-base-perl.
Preparing to unpack .../342-libxml-sax-base-perl_1.09-3_all.deb ...
Unpacking libxml-sax-base-perl (1.09-3) ...
Selecting previously unselected package libxml-sax-perl.
Preparing to unpack .../343-libxml-sax-perl_1.02+dfsg-4_all.deb ...
Unpacking libxml-sax-perl (1.02+dfsg-4) ...
Selecting previously unselected package libxml-libxml-perl.
Preparing to unpack .../344-libxml-libxml-perl_2.0207+dfsg+really+2.0134-5+b2_amd64.deb ...
Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b2) ...
Selecting previously unselected package libxmuu1:amd64.
Preparing to unpack .../345-libxmuu1_2%3a1.1.3-3+b4_amd64.deb ...
Unpacking libxmuu1:amd64 (2:1.1.3-3+b4) ...
Selecting previously unselected package libxss-dev:amd64.
Preparing to unpack .../346-libxss-dev_1%3a1.2.3-1+b3_amd64.deb ...
Unpacking libxss-dev:amd64 (1:1.2.3-1+b3) ...
Selecting previously unselected package libxt-dev:amd64.
Preparing to unpack .../347-libxt-dev_1%3a1.2.1-1.2+b2_amd64.deb ...
Unpacking libxt-dev:amd64 (1:1.2.1-1.2+b2) ...
Selecting previously unselected package libyaml-tiny-perl.
Preparing to unpack .../348-libyaml-tiny-perl_1.76-1_all.deb ...
Unpacking libyaml-tiny-perl (1.76-1) ...
Selecting previously unselected package libzzip-0-13t64:amd64.
Preparing to unpack .../349-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ...
Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ...
Selecting previously unselected package tex-common.
Preparing to unpack .../350-tex-common_6.19_all.deb ...
Unpacking tex-common (6.19) ...
Selecting previously unselected package xfonts-encodings.
Preparing to unpack .../351-xfonts-encodings_1%3a1.0.4-2.2_all.deb ...
Unpacking xfonts-encodings (1:1.0.4-2.2) ...
Selecting previously unselected package xfonts-utils.
Preparing to unpack .../352-xfonts-utils_1%3a7.7+7_amd64.deb ...
Unpacking xfonts-utils (1:7.7+7) ...
Selecting previously unselected package lmodern.
Preparing to unpack .../353-lmodern_2.005-1_all.deb ...
Unpacking lmodern (2.005-1) ...
Selecting previously unselected package mpack.
Preparing to unpack .../354-mpack_1.6-18+b2_amd64.deb ...
Unpacking mpack (1.6-18+b2) ...
Selecting previously unselected package preview-latex-style.
Preparing to unpack .../355-preview-latex-style_13.2-1_all.deb ...
Unpacking preview-latex-style (13.2-1) ...
Selecting previously unselected package t1utils.
Preparing to unpack .../356-t1utils_1.41-4_amd64.deb ...
Unpacking t1utils (1.41-4) ...
Selecting previously unselected package tcl8.6.
Preparing to unpack .../357-tcl8.6_8.6.16+dfsg-1_amd64.deb ...
Unpacking tcl8.6 (8.6.16+dfsg-1) ...
Selecting previously unselected package tcl8.6-dev:amd64.
Preparing to unpack .../358-tcl8.6-dev_8.6.16+dfsg-1_amd64.deb ...
Unpacking tcl8.6-dev:amd64 (8.6.16+dfsg-1) ...
Selecting previously unselected package texinfo-lib.
Preparing to unpack .../359-texinfo-lib_7.1.1-1+b1_amd64.deb ...
Unpacking texinfo-lib (7.1.1-1+b1) ...
Selecting previously unselected package texinfo.
Preparing to unpack .../360-texinfo_7.1.1-1_all.deb ...
Unpacking texinfo (7.1.1-1) ...
Selecting previously unselected package texlive-binaries.
Preparing to unpack .../361-texlive-binaries_2024.20240313.70630+ds-6_amd64.deb ...
Unpacking texlive-binaries (2024.20240313.70630+ds-6) ...
Selecting previously unselected package xdg-utils.
Preparing to unpack .../362-xdg-utils_1.2.1-2_all.deb ...
Unpacking xdg-utils (1.2.1-2) ...
Selecting previously unselected package texlive-base.
Preparing to unpack .../363-texlive-base_2024.20250309-1_all.deb ...
Unpacking texlive-base (2024.20250309-1) ...
Selecting previously unselected package texlive-latex-base.
Preparing to unpack .../364-texlive-latex-base_2024.20250309-1_all.deb ...
Unpacking texlive-latex-base (2024.20250309-1) ...
Selecting previously unselected package texlive-luatex.
Preparing to unpack .../365-texlive-luatex_2024.20250309-1_all.deb ...
Unpacking texlive-luatex (2024.20250309-1) ...
Selecting previously unselected package texlive-plain-generic.
Preparing to unpack .../366-texlive-plain-generic_2024.20250309-2_all.deb ...
Unpacking texlive-plain-generic (2024.20250309-2) ...
Selecting previously unselected package texlive-extra-utils.
Preparing to unpack .../367-texlive-extra-utils_2024.20250309-2_all.deb ...
Unpacking texlive-extra-utils (2024.20250309-2) ...
Selecting previously unselected package texlive-fonts-extra.
Preparing to unpack .../368-texlive-fonts-extra_2024.20250309-2_all.deb ...
Unpacking texlive-fonts-extra (2024.20250309-2) ...
Selecting previously unselected package texlive-fonts-recommended.
Preparing to unpack .../369-texlive-fonts-recommended_2024.20250309-1_all.deb ...
Unpacking texlive-fonts-recommended (2024.20250309-1) ...
Selecting previously unselected package texlive-latex-recommended.
Preparing to unpack .../370-texlive-latex-recommended_2024.20250309-1_all.deb ...
Unpacking texlive-latex-recommended (2024.20250309-1) ...
Selecting previously unselected package texlive-pictures.
Preparing to unpack .../371-texlive-pictures_2024.20250309-1_all.deb ...
Unpacking texlive-pictures (2024.20250309-1) ...
Selecting previously unselected package texlive-latex-extra.
Preparing to unpack .../372-texlive-latex-extra_2024.20250309-2_all.deb ...
Unpacking texlive-latex-extra (2024.20250309-2) ...
Selecting previously unselected package tk8.6.
Preparing to unpack .../373-tk8.6_8.6.16-1_amd64.deb ...
Unpacking tk8.6 (8.6.16-1) ...
Selecting previously unselected package x11proto-core-dev.
Preparing to unpack .../374-x11proto-core-dev_2024.1-1_all.deb ...
Unpacking x11proto-core-dev (2024.1-1) ...
Selecting previously unselected package tk8.6-dev:amd64.
Preparing to unpack .../375-tk8.6-dev_8.6.16-1_amd64.deb ...
Unpacking tk8.6-dev:amd64 (8.6.16-1) ...
Selecting previously unselected package x11-xkb-utils.
Preparing to unpack .../376-x11-xkb-utils_7.7+9_amd64.deb ...
Unpacking x11-xkb-utils (7.7+9) ...
Selecting previously unselected package xauth.
Preparing to unpack .../377-xauth_1%3a1.1.2-1.1_amd64.deb ...
Unpacking xauth (1:1.1.2-1.1) ...
Selecting previously unselected package xfonts-base.
Preparing to unpack .../378-xfonts-base_1%3a1.0.5+nmu1_all.deb ...
Unpacking xfonts-base (1:1.0.5+nmu1) ...
Selecting previously unselected package xserver-common.
Preparing to unpack .../379-xserver-common_2%3a21.1.16-1_all.deb ...
Unpacking xserver-common (2:21.1.16-1) ...
Selecting previously unselected package xvfb.
Preparing to unpack .../380-xvfb_2%3a21.1.16-1_amd64.deb ...
Unpacking xvfb (2:21.1.16-1) ...
Setting up media-types (13.0.0) ...
Setting up libpipeline1:amd64 (1.5.8-1) ...
Setting up libgraphite2-3:amd64 (1.3.14-2+b1) ...
Setting up liblcms2-2:amd64 (2.16-2) ...
Setting up libpixman-1-0:amd64 (0.44.0-3) ...
Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ...
Setting up libsharpyuv0:amd64 (1.5.0-0.1) ...
Setting up libpciaccess0:amd64 (0.17-3+b3) ...
Setting up libfile-which-perl (1.27-2) ...
Setting up systemd-sysv (257.4-5) ...
Setting up libxau6:amd64 (1:1.0.11-1) ...
Setting up libxdmcp6:amd64 (1:1.1.5-1) ...
Setting up libkeyutils1:amd64 (1.6.3-4) ...
Setting up libxcb1:amd64 (1.17.0-2+b1) ...
Setting up libpixman-1-dev:amd64 (0.44.0-3) ...
Setting up native-architecture (0.2.6) ...
Setting up libxcb-xfixes0:amd64 (1.17.0-2+b1) ...
Setting up libzstd-dev:amd64 (1.5.7+dfsg-1) ...
Setting up liblerc4:amd64 (4.0.0+ds-5) ...
Setting up bsdextrautils (2.40.4-5) ...
Setting up hicolor-icon-theme (0.18-2) ...
Setting up java-common (0.76) ...
Setting up libdatrie1:amd64 (0.2.13-3+b1) ...
Setting up libmagic-mgc (1:5.46-3) ...
Setting up mpack (1.6-18+b2) ...
Setting up libxcb-render0:amd64 (1.17.0-2+b1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglvnd0:amd64 (1.7.0-1+b2) ...
Setting up libtirpc-common (1.3.6+ds-1) ...
Setting up libxcb-glx0:amd64 (1.17.0-2+b1) ...
Setting up libdebhelper-perl (13.24.1) ...
Setting up libbrotli1:amd64 (1.1.0-2+b7) ...
Setting up libfontbox-java (1:1.8.16-5) ...
Setting up libedit2:amd64 (3.1-20250104-1) ...
Setting up libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ...
Setting up libmagic1t64:amd64 (1:5.46-3) ...
Setting up x11-common (1:7.7+24) ...
Running in chroot, ignoring request.

Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix.
Setting up libsensors-config (1:3.6.0-10) ...
Setting up libnghttp2-14:amd64 (1.64.0-1) ...
Setting up libdeflate0:amd64 (1.23-1+b1) ...
Setting up libwebpdecoder3:amd64 (1.5.0-0.1) ...
Setting up libxml-namespacesupport-perl (1.12-2) ...
Setting up gettext-base (0.23.1-1) ...
Setting up m4 (1.4.19-7) ...
Setting up libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ...
Setting up xkb-data (2.42-1) ...
Setting up liblzo2-2:amd64 (2.10-3+b1) ...
Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ...
Setting up libcom-err2:amd64 (1.47.2-1+b1) ...
Setting up file (1:5.46-3) ...
Setting up texinfo-lib (7.1.1-1+b1) ...
Setting up libunwind8:amd64 (1.8.1-0.1) ...
Setting up libyaml-tiny-perl (1.76-1) ...
Setting up libtext-wrapi18n-perl (0.06-10) ...
Setting up libjbig0:amd64 (2.1-6.1+b2) ...
Setting up libpcre2-16-0:amd64 (10.45-1) ...
Setting up libelf1t64:amd64 (0.192-4) ...
Setting up libkrb5support0:amd64 (1.21.3-5) ...
Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ...
Setting up tzdata (2025b-1) ...

Current default time zone: 'Etc/UTC'
Local time is now:      Fri Mar 28 17:57:19 UTC 2025.
Universal Time is now:  Fri Mar 28 17:57:19 UTC 2025.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

Setting up libxcb-present0:amd64 (1.17.0-2+b1) ...
Setting up libsysprof-capture-4-dev:amd64 (48.0-2) ...
Setting up libasound2-data (1.2.13-1) ...
Setting up libxml-sax-base-perl (1.09-3) ...
Setting up xtrans-dev (1.4.0-1) ...
Setting up libgraphite2-dev:amd64 (1.3.14-2+b1) ...
Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ...
Setting up autotools-dev (20240727.1) ...
Setting up libz3-4:amd64 (4.13.3-1) ...
Setting up libpcre2-32-0:amd64 (10.45-1) ...
Setting up libblas3:amd64 (3.12.1-2) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
Setting up libglib2.0-data (2.84.0-2) ...
Setting up libunbound8:amd64 (1.22.0-1+b1) ...
Setting up libpkgconf3:amd64 (1.8.1-4) ...
Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-3) ...
Setting up libasound2t64:amd64 (1.2.13-1+b1) ...
Setting up libexpat1-dev:amd64 (2.7.1-1) ...
Setting up libjpeg62-turbo:amd64 (1:2.1.5-3.1) ...
Setting up libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ...
Setting up libx11-data (2:1.8.12-1) ...
Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-3.1) ...
Setting up libepoxy0:amd64 (1.5.10-2) ...
Setting up libnspr4:amd64 (2:4.36-1) ...
Setting up libxcb-sync1:amd64 (1.17.0-2+b1) ...
Setting up libteckit0:amd64 (2.5.12+ds1-1+b1) ...
Setting up bash-completion (1:2.16.0-7) ...
Setting up uuid-dev:amd64 (2.40.4-5) ...
Setting up libapache-pom-java (33-2) ...
Setting up libavahi-common-data:amd64 (0.8-16) ...
Setting up libncurses6:amd64 (6.5+20250216-2) ...
Setting up libdbus-1-3:amd64 (1.16.2-2) ...
Setting up xfonts-encodings (1:1.0.4-2.2) ...
Setting up libfribidi0:amd64 (1.0.16-1) ...
Setting up t1utils (1.41-4) ...
Setting up libtexlua53-5:amd64 (2024.20240313.70630+ds-6) ...
Setting up libproc2-0:amd64 (2:4.0.4-7) ...
Setting up comerr-dev:amd64 (2.1-1.47.2-1+b1) ...
Setting up libunistring5:amd64 (1.3-2) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libssl-dev:amd64 (3.4.1-1) ...
Setting up libpng16-16t64:amd64 (1.6.47-1.1) ...
Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ...
Setting up autopoint (0.23.1-1) ...
Setting up libmpfi0:amd64 (1.5.4+ds-4) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up libsepol-dev:amd64 (3.8.1-1) ...
Setting up libpcsclite1:amd64 (2.3.2-1) ...
Setting up pkgconf-bin (1.8.1-4) ...
Setting up libsensors5:amd64 (1:3.6.0-10+b1) ...
Setting up liblerc-dev:amd64 (4.0.0+ds-5) ...
Setting up libk5crypto3:amd64 (1.21.3-5) ...
Setting up libkpathsea6:amd64 (2024.20240313.70630+ds-6) ...
Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ...
Setting up libgfortran5:amd64 (14.2.0-19) ...
Setting up libvulkan1:amd64 (1.4.309.0-1) ...
Setting up autoconf (2.72-3) ...
Setting up libnghttp3-9:amd64 (1.8.0-1) ...
Setting up libwebp7:amd64 (1.5.0-0.1) ...
Setting up libnghttp3-dev:amd64 (1.8.0-1) ...
Setting up liblzma-dev:amd64 (5.6.4-1) ...
Setting up libgif7:amd64 (5.2.2-1+b1) ...
Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up libffi8:amd64 (3.4.7-1) ...
Setting up libpcre2-posix3:amd64 (10.45-1) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.24) ...
Setting up libxshmfence1:amd64 (1.3.3-1) ...
Setting up at-spi2-common (2.56.0-3) ...
Setting up libmime-charset-perl (1.013.1-2) ...
Setting up libtiff6:amd64 (4.7.0-2) ...
Setting up libxcb-randr0:amd64 (1.17.0-2+b1) ...
Setting up dbus-session-bus-common (1.16.2-2) ...
Setting up libuchardet0:amd64 (0.0.8-1+b2) ...
Setting up procps (2:4.0.4-7) ...
Setting up bison (2:3.8.2+dfsg-1+b2) ...
update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode
Setting up libtasn1-6:amd64 (4.20.0-2) ...
Setting up fonts-lmodern (2.005-1) ...
Setting up libx11-6:amd64 (2:1.8.12-1) ...
Setting up libthai-data (0.1.29-2) ...
Setting up xorg-sgml-doctools (1:1.11-1.1) ...
Setting up netbase (6.5) ...
Setting up libkrb5-3:amd64 (1.21.3-5) ...
Setting up libwayland-egl1:amd64 (1.23.1-3) ...
Setting up libicu76:amd64 (76.1-3) ...
Setting up libxkbfile1:amd64 (1:1.1.0-1+b4) ...
Setting up libpaper2:amd64 (2.2.5-0.3+b1) ...
Setting up libssh2-1t64:amd64 (1.11.1-1) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up dbus-system-bus-common (1.16.2-2) ...
Creating group 'messagebus' with GID 997.

Creating user 'messagebus' (System Message Bus) with UID 997 and GID 997.

Setting up libtext-unidecode-perl (1.30-3) ...
Setting up libsharpyuv-dev:amd64 (1.5.0-0.1) ...
Setting up libfile-homedir-perl (1.006-2) ...
Setting up libtasn1-6-dev:amd64 (4.20.0-2) ...
Setting up openssl (3.4.1-1) ...
Setting up libwebpmux3:amd64 (1.5.0-0.1) ...
Setting up libtiffxx6:amd64 (4.7.0-2) ...
Setting up libdeflate-dev:amd64 (1.23-1+b1) ...
Setting up libdrm-common (2.4.124-1) ...
Setting up libxcomposite1:amd64 (1:0.4.6-1) ...
Setting up readline-common (8.2-6) ...
Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ...
Setting up xdg-utils (1.2.1-2) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up libldap2:amd64 (2.6.9+dfsg-2) ...
Setting up libxmuu1:amd64 (2:1.1.3-3+b4) ...
Setting up dbus-bin (1.16.2-2) ...
Setting up libbrotli-dev:amd64 (1.1.0-2+b7) ...
Setting up libblas-dev:amd64 (3.12.1-2) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
Setting up libsynctex2:amd64 (2024.20240313.70630+ds-6) ...
Setting up libbz2-dev:amd64 (1.0.8-6) ...
Setting up libxkbcommon0:amd64 (1.7.0-2) ...
Setting up libpotrace0:amd64 (1.16-2+b2) ...
Setting up libwayland-client0:amd64 (1.23.1-3) ...
Setting up automake (1:1.17-4) ...
update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
Setting up libgfortran-14-dev:amd64 (14.2.0-19) ...
Setting up x11proto-dev (2024.1-1) ...
Setting up libfile-stripnondeterminism-perl (1.14.1-2) ...
Setting up libxcb-dri3-0:amd64 (1.17.0-2+b1) ...
Setting up libblkid-dev:amd64 (2.40.4-5) ...
Setting up libllvm19:amd64 (1:19.1.7-3) ...
Setting up libwayland-server0:amd64 (1.23.1-3) ...
Setting up libx11-xcb1:amd64 (2:1.8.12-1) ...
Setting up libice6:amd64 (2:1.1.1-1) ...
Setting up tcl8.6 (8.6.16+dfsg-1) ...
Setting up liblapack3:amd64 (3.12.1-2) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
Setting up libncurses-dev:amd64 (6.5+20250216-2) ...
Setting up gettext (0.23.1-1) ...
Setting up libxdamage1:amd64 (1:1.1.6-1+b2) ...
Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-3) ...
Setting up libpdfbox-java (1:1.8.16-5) ...
Setting up libxau-dev:amd64 (1:1.0.11-1) ...
Setting up libxpm4:amd64 (1:3.5.17-1+b3) ...
Setting up libpcre2-dev:amd64 (10.45-1) ...
Setting up nettle-dev:amd64 (3.10.1-1) ...
Setting up libxrender1:amd64 (1:0.9.12-1) ...
Setting up libice-dev:amd64 (2:1.1.1-1) ...
Setting up libtool (2.5.4-4) ...
Setting up libselinux1-dev:amd64 (3.8.1-1) ...
Setting up fontconfig-config (2.15.0-2.2) ...
Setting up libfribidi-dev:amd64 (1.0.16-1) ...
Setting up libwebpdemux2:amd64 (1.5.0-0.1) ...
Setting up tcl8.6-dev:amd64 (8.6.16+dfsg-1) ...
Setting up libpng-dev:amd64 (1.6.47-1.1) ...
Setting up libcommons-parent-java (56-1) ...
Setting up libavahi-common3:amd64 (0.8-16) ...
Setting up libjpeg-dev:amd64 (1:2.1.5-3.1) ...
Setting up libjbig-dev:amd64 (2.1-6.1+b2) ...
Setting up libcommons-logging-java (1.3.0-1) ...
Setting up libxext6:amd64 (2:1.3.4-1+b3) ...
Setting up libidn2-0:amd64 (2.3.8-2) ...
Setting up libnss3:amd64 (2:3.109-1) ...
Setting up dbus-daemon (1.16.2-2) ...
Setting up libpaper-utils (2.2.5-0.3+b1) ...
Setting up libffi-dev:amd64 (3.4.7-1) ...
Setting up gfortran-14-x86-64-linux-gnu (14.2.0-19) ...
Setting up pkgconf:amd64 (1.8.1-4) ...
Setting up libxxf86vm1:amd64 (1:1.1.4-1+b4) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:amd64 (0.1.29-2+b1) ...
Setting up ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
152 added, 0 removed; done.
Setting up libxdmcp-dev:amd64 (1:1.1.5-1) ...
Setting up libglib2.0-0t64:amd64 (2.84.0-2) ...
Setting up libwebp-dev:amd64 (1.5.0-0.1) ...
Setting up libptexenc1:amd64 (2024.20240313.70630+ds-6) ...
Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ...
Setting up libtiff-dev:amd64 (4.7.0-2) ...
Setting up libxfixes3:amd64 (1:6.0.0-2+b4) ...
Setting up x11proto-core-dev (2024.1-1) ...
Setting up libldap-dev:amd64 (2.6.9+dfsg-2) ...
Setting up dbus (1.16.2-2) ...
Running in chroot, ignoring request.

invoke-rc.d: policy-rc.d denied execution of start.
Setting up shared-mime-info (2.4-5+b2) ...
Setting up libp11-kit0:amd64 (0.25.5-3) ...
Setting up libxinerama1:amd64 (2:1.1.4-3+b3) ...
Setting up liblapack-dev:amd64 (3.12.1-2) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ...
Setting up libxrandr2:amd64 (2:1.5.4-1+b3) ...
Setting up icu-devtools (76.1-3) ...
Setting up ucf (3.0050) ...
Setting up gir1.2-glib-2.0:amd64 (2.84.0-2) ...
Setting up libssh2-1-dev:amd64 (1.11.1-1) ...
Setting up libidn2-dev:amd64 (2.3.8-2) ...
Setting up libreadline8t64:amd64 (8.2-6) ...
Setting up dh-strip-nondeterminism (1.14.1-2) ...
Setting up libdrm2:amd64 (2.4.124-1) ...
Setting up libdatrie-dev:amd64 (0.2.13-3+b1) ...
Setting up gir1.2-glib-2.0-dev:amd64 (2.84.0-2) ...
Setting up xauth (1:1.1.2-1.1) ...
Setting up groff-base (1.23.0-7) ...
Setting up libwayland-cursor0:amd64 (1.23.1-3) ...
Setting up libpam-systemd:amd64 (257.4-5) ...
Setting up libharfbuzz0b:amd64 (10.2.0-1+b1) ...
Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-2) ...
Setting up libxss1:amd64 (1:1.2.3-1+b3) ...
Setting up libfontconfig1:amd64 (2.15.0-2.2) ...
Setting up ca-certificates-java (20240118) ...
No JRE found. Skipping Java certificates setup.
Setting up gfortran-14 (14.2.0-19) ...
Setting up libsm6:amd64 (2:1.2.6-1) ...
Setting up libxfont2:amd64 (1:2.0.6-1+b3) ...
Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ...
Setting up libicu-dev:amd64 (76.1-3) ...
Setting up libavahi-client3:amd64 (0.8-16) ...
Setting up libmount-dev:amd64 (2.40.4-5) ...
Setting up libp11-kit-dev:amd64 (0.25.5-3) ...
Setting up libpython3-stdlib:amd64 (3.13.2-2) ...
Setting up libdrm-amdgpu1:amd64 (2.4.124-1) ...
Setting up libgnutls30t64:amd64 (3.8.9-2) ...
Setting up libgnutls-openssl27t64:amd64 (3.8.9-2) ...
Setting up gtk-update-icon-cache (4.18.2+ds-1) ...
Setting up libnghttp2-dev:amd64 (1.64.0-1) ...
Setting up fontconfig (2.15.0-2.2) ...
Regenerating fonts cache... done.
Setting up libxft2:amd64 (2.3.6-1+b4) ...
Setting up libgio-2.0-dev:amd64 (2.84.0-2) ...
Setting up libharfbuzz-icu0:amd64 (10.2.0-1+b1) ...
Setting up libxcb1-dev:amd64 (1.17.0-2+b1) ...
Setting up libatk1.0-0t64:amd64 (2.56.0-3) ...
Setting up openjdk-21-jre-headless:amd64 (21.0.7~8ea-1) ...
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Setting up libxi6:amd64 (2:1.8.2-1) ...
Setting up libtirpc3t64:amd64 (1.3.6+ds-1) ...
Setting up python3.13 (3.13.2-2) ...
Setting up libgirepository-2.0-0:amd64 (2.84.0-2) ...
Setting up libsombok3:amd64 (2.4.0-2+b2) ...
Setting up libsm-dev:amd64 (2:1.2.6-1) ...
Setting up libxtst6:amd64 (2:1.2.5-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libtk8.6:amd64 (8.6.16-1) ...
Setting up libxcursor1:amd64 (1:1.2.3-1) ...
Setting up libpango-1.0-0:amd64 (1.56.3-1) ...
Setting up libdrm-intel1:amd64 (2.4.124-1) ...
Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Setting up libx11-dev:amd64 (2:1.8.12-1) ...
Setting up libcloudproviders0:amd64 (0.3.6-2) ...
Setting up libglib2.0-bin (2.84.0-2) ...
Setting up python3 (3.13.2-2) ...
Setting up libharfbuzz-gobject0:amd64 (10.2.0-1+b1) ...
Setting up libreadline-dev:amd64 (8.2-6) ...
Setting up xfonts-utils (1:7.7+7) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Created symlink '/etc/systemd/system/timers.target.wants/man-db.timer' -> '/usr/lib/systemd/system/man-db.timer'.

Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1) ...
Setting up libxml-sax-perl (1.02+dfsg-4) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up gfortran (4:14.2.0-1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:amd64 (1.18.4-1+b1) ...
Setting up libcolord2:amd64 (1.4.7-3) ...
Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ...
Setting up libfreetype-dev:amd64 (2.13.3+dfsg-1) ...
Setting up libdconf1:amd64 (0.40.0-5) ...
Setting up tex-common (6.19) ...
update-language: texlive-base not installed and configured, doing nothing!
Setting up libxcb-shm0-dev:amd64 (1.17.0-2+b1) ...
Setting up dbus-user-session (1.16.2-2) ...
Setting up xfonts-base (1:1.0.5+nmu1) ...
Setting up python3-packaging (24.2-1) ...
Setting up libtirpc-dev:amd64 (1.3.6+ds-1) ...
Setting up libgnutls-dane0t64:amd64 (3.8.9-2) ...
Setting up libharfbuzz-cairo0:amd64 (10.2.0-1+b1) ...
Setting up adwaita-icon-theme (48.0-1) ...
update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libgssrpc4t64:amd64 (1.21.3-5) ...
Setting up libunicode-linebreak-perl (0.0.20190101-1+b9) ...
Setting up libatspi2.0-0t64:amd64 (2.56.0-3) ...
Setting up libxt6t64:amd64 (1:1.2.1-1.2+b2) ...
Setting up libxcb-render0-dev:amd64 (1.17.0-2+b1) ...
Setting up libxext-dev:amd64 (2:1.3.4-1+b3) ...
Setting up libthai-dev:amd64 (0.1.29-2+b1) ...
Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b2) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up lmodern (2.005-1) ...
Setting up libharfbuzz-subset0:amd64 (10.2.0-1+b1) ...
Setting up libcairo-gobject2:amd64 (1.18.4-1+b1) ...
Setting up libpangoft2-1.0-0:amd64 (1.56.3-1) ...
Setting up libxrender-dev:amd64 (1:0.9.12-1) ...
Setting up libcups2t64:amd64 (2.4.10-2+b1) ...
Setting up libpangocairo-1.0-0:amd64 (1.56.3-1) ...
Setting up libkadm5clnt-mit12:amd64 (1.21.3-5) ...
Setting up libgnutls28-dev:amd64 (3.8.9-2) ...
Setting up libcairo-script-interpreter2:amd64 (1.18.4-1+b1) ...
Setting up libatk-bridge2.0-0t64:amd64 (2.56.0-3) ...
Setting up tk8.6 (8.6.16-1) ...
Setting up mesa-libgallium:amd64 (25.0.2-1) ...
Setting up libgio-2.0-dev-bin (2.84.0-2) ...
Setting up libxmu6:amd64 (2:1.1.3-3+b4) ...
Setting up gir1.2-freedesktop:amd64 (1.84.0-1) ...
Setting up girepository-tools:amd64 (2.84.0-2) ...
Setting up libpangoxft-1.0-0:amd64 (1.56.3-1) ...
Setting up libcurl4t64:amd64 (8.13.0~rc3-1) ...
Setting up libkdb5-10t64:amd64 (1.21.3-5) ...
Setting up libgbm1:amd64 (25.0.2-1) ...
Setting up libfontconfig-dev:amd64 (2.15.0-2.2) ...
Setting up preview-latex-style (13.2-1) ...
Setting up libgl1-mesa-dri:amd64 (25.0.2-1) ...
Setting up pango1.0-tools (1.56.3-1) ...
Setting up debhelper (13.24.1) ...
Setting up dconf-service (0.40.0-5) ...
Setting up libxaw7:amd64 (2:1.0.16-1) ...
Setting up libxss-dev:amd64 (1:1.2.3-1+b3) ...
Setting up gir1.2-harfbuzz-0.0:amd64 (10.2.0-1+b1) ...
Setting up gir1.2-pango-1.0:amd64 (1.56.3-1) ...
Setting up libxt-dev:amd64 (1:1.2.1-1.2+b2) ...
Setting up gir1.2-freedesktop-dev:amd64 (1.84.0-1) ...
Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up texinfo (7.1.1-1) ...
Running mktexlsr. This may take some time. ... done.
Setting up texlive-binaries (2024.20240313.70630+ds-6) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up libkadm5srv-mit12:amd64 (1.21.3-5) ...
Setting up texlive-base (2024.20250309-1) ...
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
Setting up libxft-dev:amd64 (2.3.6-1+b4) ...
Setting up krb5-multidev:amd64 (1.21.3-5) ...
Setting up libglib2.0-dev-bin (2.84.0-2) ...
Setting up libfontconfig1-dev:amd64 (2.15.0-2.2) ...
Setting up libglx-mesa0:amd64 (25.0.2-1) ...
Setting up libglx0:amd64 (1.7.0-1+b2) ...
Setting up dconf-gsettings-backend:amd64 (0.40.0-5) ...
Setting up texlive-luatex (2024.20250309-1) ...
Setting up x11-xkb-utils (7.7+9) ...
Setting up texlive-plain-generic (2024.20250309-2) ...
Setting up libkrb5-dev:amd64 (1.21.3-5) ...
Setting up libgl1:amd64 (1.7.0-1+b2) ...
Setting up libglib2.0-dev:amd64 (2.84.0-2) ...
Setting up texlive-latex-base (2024.20250309-1) ...
Setting up libcurl4-openssl-dev:amd64 (8.13.0~rc3-1) ...
Setting up texlive-extra-utils (2024.20250309-2) ...
Setting up texlive-fonts-extra (2024.20250309-2) ...
Setting up texlive-latex-recommended (2024.20250309-1) ...
Setting up texlive-pictures (2024.20250309-1) ...
Setting up tk8.6-dev:amd64 (8.6.16-1) ...
Setting up texlive-fonts-recommended (2024.20250309-1) ...
Setting up libcairo2-dev:amd64 (1.18.4-1+b1) ...
Setting up xserver-common (2:21.1.16-1) ...
Setting up libgtk-3-common (3.24.49-2) ...
Setting up libharfbuzz-dev:amd64 (10.2.0-1+b1) ...
Setting up xvfb (2:21.1.16-1) ...
Setting up texlive-latex-extra (2024.20250309-2) ...
Setting up libpango1.0-dev:amd64 (1.56.3-1) ...
Setting up libgtk-3-0t64:amd64 (3.24.49-2) ...
Processing triggers for libc-bin (2.41-6) ...
Processing triggers for systemd (257.4-5) ...
Processing triggers for ca-certificates-java (20240118) ...
Adding debian:ACCVRAIZ1.pem
Adding debian:AC_RAIZ_FNMT-RCM.pem
Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem
Adding debian:ANF_Secure_Server_Root_CA.pem
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:Amazon_Root_CA_1.pem
Adding debian:Amazon_Root_CA_2.pem
Adding debian:Amazon_Root_CA_3.pem
Adding debian:Amazon_Root_CA_4.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem
Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:BJCA_Global_Root_CA1.pem
Adding debian:BJCA_Global_Root_CA2.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:CFCA_EV_ROOT.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:COMODO_RSA_Certification_Authority.pem
Adding debian:Certainly_Root_E1.pem
Adding debian:Certainly_Root_R1.pem
Adding debian:Certigna.pem
Adding debian:Certigna_Root_CA.pem
Adding debian:Certum_EC-384_CA.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Certum_Trusted_Network_CA_2.pem
Adding debian:Certum_Trusted_Root_CA.pem
Adding debian:CommScope_Public_Trust_ECC_Root-01.pem
Adding debian:CommScope_Public_Trust_ECC_Root-02.pem
Adding debian:CommScope_Public_Trust_RSA_Root-01.pem
Adding debian:CommScope_Public_Trust_RSA_Root-02.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:D-TRUST_BR_Root_CA_1_2020.pem
Adding debian:D-TRUST_EV_Root_CA_1_2020.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:DigiCert_Assured_ID_Root_G2.pem
Adding debian:DigiCert_Assured_ID_Root_G3.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:DigiCert_Global_Root_G2.pem
Adding debian:DigiCert_Global_Root_G3.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem
Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem
Adding debian:DigiCert_Trusted_Root_G4.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
Adding debian:Entrust_Root_Certification_Authority_-_G4.pem
Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem
Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
Adding debian:GLOBALTRUST_2020.pem
Adding debian:GTS_Root_R1.pem
Adding debian:GTS_Root_R2.pem
Adding debian:GTS_Root_R3.pem
Adding debian:GTS_Root_R4.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:GlobalSign_Root_CA_-_R6.pem
Adding debian:GlobalSign_Root_E46.pem
Adding debian:GlobalSign_Root_R46.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem
Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
Adding debian:HiPKI_Root_CA_-_G1.pem
Adding debian:Hongkong_Post_Root_CA_3.pem
Adding debian:ISRG_Root_X1.pem
Adding debian:ISRG_Root_X2.pem
Adding debian:IdenTrust_Commercial_Root_CA_1.pem
Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
Adding debian:Izenpe.com.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
Adding debian:NAVER_Global_Root_Certification_Authority.pem
Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem
Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem
Adding debian:SZAFIR_ROOT_CA2.pem
Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem
Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:SecureSign_Root_CA12.pem
Adding debian:SecureSign_Root_CA14.pem
Adding debian:SecureSign_Root_CA15.pem
Adding debian:SecureTrust_CA.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Security_Communication_ECC_RootCA1.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:Security_Communication_RootCA3.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
Adding debian:TWCA_CYBER_Root_CA.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem
Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:Telia_Root_CA_v2.pem
Adding debian:TrustAsia_Global_Root_CA_G3.pem
Adding debian:TrustAsia_Global_Root_CA_G4.pem
Adding debian:Trustwave_Global_Certification_Authority.pem
Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
Adding debian:TunTrust_Root_CA.pem
Adding debian:UCA_Extended_Validation_Root.pem
Adding debian:UCA_Global_G2_Root.pem
Adding debian:USERTrust_ECC_Certification_Authority.pem
Adding debian:USERTrust_RSA_Certification_Authority.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:certSIGN_Root_CA_G2.pem
Adding debian:e-Szigno_Root_CA_2017.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:emSign_ECC_Root_CA_-_C3.pem
Adding debian:emSign_ECC_Root_CA_-_G3.pem
Adding debian:emSign_Root_CA_-_C1.pem
Adding debian:emSign_Root_CA_-_G1.pem
Adding debian:vTrus_ECC_Root_CA.pem
Adding debian:vTrus_Root_CA.pem
done.
Setting up openjdk-21-jre:amd64 (21.0.7~8ea-1) ...
Setting up openjdk-21-jdk-headless:amd64 (21.0.7~8ea-1) ...
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jwebserver to provide /usr/bin/jwebserver (jwebserver) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode
Setting up default-jre-headless (2:1.21-76) ...
Setting up default-jre (2:1.21-76) ...
Setting up openjdk-21-jdk:amd64 (21.0.7~8ea-1) ...
update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode
Setting up default-jdk-headless (2:1.21-76) ...
Setting up default-jdk (2:1.21-76) ...
Processing triggers for ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for tex-common (6.19) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
	This may take some time... done.
Processing triggers for ca-certificates-java (20240118) ...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
fakeroot is already the newest version (1.37.1.1-1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: Running cd /build/reproducible-path/r-base-4.4.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../r-base_4.4.3-1_source.changes
dpkg-buildpackage: info: source package r-base
dpkg-buildpackage: info: source version 4.4.3-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Dirk Eddelbuettel <edd@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
*** clean ***
dh_testdir
dh_testroot
rm -f	configure-stamp \
	build-stamp build-indep-stamp build-arch-stamp \
	make-stamp make-arch-stamp make-indep-stamp \
	install-indep-stamp install-arch-stamp \
	check-stamp
[ ! -f Makefile ] || /usr/bin/make distclean
rm -f `find . -name "*~"`
rm -rf debian/tmp debian/files debian/files* core debian/substvars debian/files
rm -f doc/html/function.html doc/html/packages.html
rm -f modules/*.so src/unix/Rscript
dh_clean
 debian/rules binary
*** configure ***
#automake
#autoconf
dh_testdir
R_SHELL=/bin/bash				\
        mkdir_p="/bin/mkdir -p"                         \
MKDIR_P="/bin/mkdir -p"                         \
R_TEXI2DVICMD=emulation				\
R_PAPERSIZE=letter				\
R_BROWSER=xdg-open				\
R_BZIPCMD=/bin/bzip2				\
R_GZIPCMD="/bin/gzip -n"			\
PAGER=/usr/bin/pager				\
PERL=/usr/bin/perl				\
JAVA_HOME=/usr/lib/jvm/default-java             \
R_UNZIPCMD=/usr/bin/unzip			\
R_ZIPCMD=/usr/bin/zip				\
R_PRINTCMD=/usr/bin/lpr				\
TAR=/bin/tar					\
LIBnn=lib					\
AWK=/usr/bin/awk                                \
DD=/bin/dd					\
GREP=/bin/grep					\
FGREP="/bin/grep -F"				\
EGREP="/bin/grep -E"				\
SED=/bin/sed					\
GETWD="/bin/pwd"				\
CC=gcc					\
CXX=g++						\
F77=gfortran					\
FC=gfortran					\
CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2"				\
CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2"				\
FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection"				\
FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection"				\
CPPFLAGS=					\
LDFLAGS="-Wl,-z,relro"				\
FLIBS=						\
rsharedir=/usr/share/R/share			\
rincludedir=/usr/share/R/include		\
rdocdir=/usr/share/R/doc			\
./configure --prefix=/usr			\
	    --with-cairo			\
	    --with-jpeglib			\
	    --with-readline			\
	    --with-tcltk			\
	    --mandir=/usr/share/man		\
	    --infodir=/usr/share/info		\
	    --datadir=/usr/share/R/share	\
	    --includedir=/usr/share/R/include	\
	    --with-blas		\
	    --with-lapack		\
	    --enable-long-double       \
	    --enable-R-profiling		\
	    --enable-R-shlib			\
	    --enable-memory-profiling		\
	    --without-recommended-packages	\
	    --build x86_64-linux-gnu
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
loading site script './config.site'
loading build-specific script './config.site'
checking for pwd... /bin/pwd
checking whether builddir is srcdir... yes
checking whether ln -s works... yes
checking for ar... ar
checking for a BSD-compatible install... /usr/bin/install -c
checking for sed... /bin/sed
checking for which... /usr/bin/which
checking for /usr/bin/pager... /usr/bin/pager
checking for /bin/tar... /bin/tar
checking for tex... /usr/bin/tex
checking for pdftex... /usr/bin/pdftex
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for texi2any... /usr/bin/texi2any
checking whether texi2any version is at least 5.1... yes
checking for ginstall-info... no
checking for install-info... no
checking for texi2dvi... /usr/bin/texi2dvi
checking for kpsewhich... /usr/bin/kpsewhich
checking for latex inconsolata package... found zi4.sty
checking for unzip... /usr/bin/unzip
checking for zip... /usr/bin/zip
checking for gzip... /bin/gzip -n
checking for bzip2... /bin/bzip2
using default browser ... xdg-open
checking for xdg-open... /usr/bin/xdg-open
checking for working aclocal... found
checking for working autoconf... found
checking for working autoheader... found
checking for bison... bison -y
checking for notangle... false
checking for realpath... /usr/bin/realpath
checking for pkg-config... /usr/bin/pkg-config
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for wchar.h... yes
checking for minix/config.h... no
checking for sys/time.h... yes
checking for sys/param.h... yes
checking whether it is safe to define __EXTENSIONS__... yes
checking whether _XOPEN_SOURCE should be defined... no
checking how to run the C preprocessor... gcc -E
looking for a modern Fortran compiler
checking whether the compiler supports GNU Fortran... yes
checking whether gfortran accepts -g... yes
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking whether g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 can compile C++ code... yes
checking how to run the C++ preprocessor... g++ -E
checking whether __attribute__((visibility())) is supported... yes
checking whether gcc accepts -fvisibility... yes
checking whether g++ accepts -fvisibility... yes
checking whether gfortran accepts -fvisibility... yes
checking for gcc... gcc
checking whether the compiler supports GNU Objective C... no
checking whether gcc accepts -g... no
checking whether gcc -std=gnu17 is a C17 compiler... yes
checking whether gcc -std=gnu23 is a C23 compiler... yes
checking whether gcc -std=gnu90 is a C90 compiler... yes
checking whether gcc -std=gnu99 is a C99 compiler... yes
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking for gawk... /usr/bin/awk
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for cos in -lm... yes
checking for sin in -lm... yes
checking for dlopen in -ldl... yes
checking for readline/history.h... yes
checking for readline/readline.h... yes
checking for rl_callback_read_char in -lreadline... yes
checking for history_truncate_file... yes
checking for tilde_expand_word... yes
checking whether rl_completion_matches exists and is declared... yes
checking whether rl_resize_terminal exists and is declared... yes
checking whether rl_sort_completion_matches exists and is declared... yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for dlfcn.h... (cached) yes
checking for fcntl.h... yes
checking for glob.h... yes
checking for grp.h... yes
checking for pwd.h... yes
checking for sched.h... yes
checking for strings.h... (cached) yes
checking for sys/resource.h... yes
checking for sys/select.h... yes
checking for sys/socket.h... yes
checking for sys/stat.h... (cached) yes
checking for sys/time.h... (cached) yes
checking for sys/times.h... yes
checking for sys/utsname.h... yes
checking for unistd.h... (cached) yes
checking for utime.h... yes
checking for arpa/inet.h... yes
checking for elf.h... yes
checking for features.h... yes
checking for floatingpoint.h... no
checking for langinfo.h... yes
checking for netdb.h... yes
checking for netinet/in.h... yes
checking for sys/param.h... (cached) yes
checking for stdalign.h... yes
checking for errno.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... yes
checking for locale.h... yes
checking for stdarg.h... yes
checking for stdbool.h... yes
checking for stdint.h... (cached) yes
checking for string.h... (cached) yes
checking for gcc options needed to detect all undeclared functions... none needed
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking for egrep -e... (cached) /bin/grep -E
checking for GNU C library with version >= 2... yes
checking for uint64_t... yes
checking for int64_t... yes
checking for int_fast64_t... yes
checking for pid_t... yes
checking for size_t... yes
checking whether SIZE_MAX is declared... yes
checking for blkcnt_t... yes
checking for type of socket length... socklen_t *
checking for stack_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of double... 8
checking size of size_t... 8
checking for C stack direction... down
checking size of long double... 16
checking whether we can compute C Make dependencies... yes, using $(CC) -MM
checking whether gcc supports -c -o FILE.lo... yes
checking for gcc option to support OpenMP... -fopenmp
checking how to get verbose linking output from gfortran... -v
checking for Fortran libraries of gfortran...  -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lgfortran -lm -lquadmath
checking how to get verbose linking output from gcc... -v
checking for C libraries of gcc...  -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lgcc_s
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking whether gfortran appends underscores to external names... yes
checking whether gfortran appends extra underscores to external names... no
checking whether mixed C/Fortran code can be run... yes
checking whether gfortran and gcc agree on int and double... yes
checking whether gfortran and gcc agree on double complex... yes
checking for gfortran option to support OpenMP... -fopenmp
checking whether g++ accepts -M for generating dependencies... yes
checking whether we can compute ObjC Make dependencies... no
checking for type of 'hidden' Fortran character lengths... size_t
checking for xmkmf... no
checking whether g++  supports C++11 features with -std=gnu++11... yes
checking whether g++  supports C++14 features with -std=gnu++14... yes
checking whether g++  supports C++17 features with -std=gnu++17... yes
checking whether g++  supports C++20 features with -std=gnu++20... yes
checking whether g++  supports C++23 features with -std=gnu++23... yes
checking whether g++ -std=gnu++17 can compile ObjC++... no
checking whether  can compile ObjC++... no
checking for Objective C++ compiler... no working ObjC++ compiler found
checking for g++ -std=gnu++17 option to support OpenMP... -fopenmp
checking for option providing pthread_kill... none required
checking whether POSIX threads are supported... yes
checking for off_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking whether alloca is declared... yes
checking whether expm1 exists and is declared... yes
checking whether hypot exists and is declared... yes
checking whether log1p exists and is declared... yes
checking whether log1pl exists and is declared... yes
checking whether log2 exists and is declared... yes
checking whether log10 exists and is declared... yes
checking whether nearbyint exists and is declared... yes
checking whether nearbyintl exists and is declared... yes
checking whether powl exists and is declared... yes
checking whether rintl exists and is declared... yes
checking whether va_copy exists and is declared... yes
checking for isblank... yes
checking for sunmath.h... no
checking for cospi in -lsunmath... no
checking for atanpi... yes
checking for atan2pi... yes
checking for cospi... yes
checking for exp10... yes
checking for pown... no
checking for sinpi... yes
checking for tanpi... yes
checking for __cospi... no
checking for __sinpi... no
checking for __tanpi... no
checking for fseeko... yes
checking for ftello... yes
checking whether fcntl exists and is declared... yes
checking whether getgrgid exists and is declared... yes
checking whether getpwnam exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether kill exists and is declared... yes
checking whether sigaction exists and is declared... yes
checking whether sigaltstack exists and is declared... yes
checking whether sigemptyset exists and is declared... yes
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... yes
checking whether getline exists and is declared... yes
checking whether select exists and is declared... yes
checking whether setenv exists and is declared... yes
checking whether unsetenv exists and is declared... yes
checking whether getrlimit exists and is declared... yes
checking whether setrlimit exists and is declared... yes
checking whether getrusage exists and is declared... yes
checking whether getpriority exists and is declared... yes
checking whether chmod exists and is declared... yes
checking whether mkfifo exists and is declared... yes
checking whether stat exists and is declared... yes
checking whether umask exists and is declared... yes
checking whether gettimeofday exists and is declared... yes
checking whether utimes exists and is declared... yes
checking whether times exists and is declared... yes
checking whether gmtime_r exists and is declared... yes
checking whether localtime_r exists and is declared... yes
checking whether nl_langinfo exists and is declared... yes
checking whether access exists and is declared... yes
checking whether chdir exists and is declared... yes
checking whether execv exists and is declared... yes
checking whether ftruncate exists and is declared... yes
checking whether getcwd exists and is declared... yes
checking whether geteuid exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether link exists and is declared... yes
checking whether readlink exists and is declared... yes
checking whether symlink exists and is declared... yes
checking whether sysconf exists and is declared... yes
checking whether sched_setaffinity exists and is declared... yes
checking whether sched_getaffinity exists and is declared... yes
checking whether utime exists and is declared... yes
checking whether utimensat exists and is declared... yes
checking for clock_gettime in -lrt... yes
checking whether clock_gettime exists and is declared... yes
checking whether timespec_get exists and is declared... yes
checking for putenv... yes
checking whether putenv is declared... yes
checking for vasprintf... yes
checking whether vasprintf is declared... yes
checking for mempcpy... yes
checking for realpath... yes
checking whether realpath is declared... yes
checking whether glob exists and is declared... yes
checking for dladdr... yes
checking for dlsym... yes
checking whether dladdr is declared... yes
checking whether dlsym is declared... yes
checking whether RTLD_DEFAULT is declared... yes
checking whether RTLD_NEXT is declared... yes
checking for thread.h... no
checking whether thr_stksegment exists and is declared... no
checking for stpcpy... yes
checking for isnan... yes
checking whether isfinite is declared... yes
checking whether isnan is declared... yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking whether putenv("FOO") can unset an environment variable... yes
checking whether putenv("FOO=") can unset an environment variable... no
checking for nl_langinfo and CODESET... yes
checking for mkdtemp... yes
checking for strdup... yes
checking for strncasecmp... yes
checking whether mkdtemp is declared... yes
checking whether strdup is declared... yes
checking whether strncasecmp is declared... yes
checking for library containing connect... none required
checking for library containing gethostbyname... none required
checking for working calloc... yes
checking for working isfinite... yes
checking for working log1p... yes
checking whether ftell works correctly on files opened for append... yes
checking for working sigaction... yes
checking whether mktime, gmtime, localtime work correctly in 2020... yes
checking whether mktime sets errno... yes
checking whether mktime works correctly after 2037... yes
checking whether mktime works correctly before 1902... yes
checking whether mktime works correctly in 1969... yes
checking for complex.h... yes
checking for double complex... yes
checking whether C99 double complex is supported... yes
checking whether cabs exists and is declared... yes
checking whether carg exists and is declared... yes
checking whether cexp exists and is declared... yes
checking whether clog exists and is declared... yes
checking whether csqrt exists and is declared... yes
checking whether cpow exists and is declared... yes
checking whether ccos exists and is declared... yes
checking whether csin exists and is declared... yes
checking whether ctan exists and is declared... yes
checking whether cacos exists and is declared... yes
checking whether casin exists and is declared... yes
checking whether catan exists and is declared... yes
checking whether ccosh exists and is declared... yes
checking whether csinh exists and is declared... yes
checking whether ctanh exists and is declared... yes
checking for working ctanh... yes
checking whether 'struct tm' includes tm_zone... yes
checking whether 'struct tm' includes tm_gmtoff... yes
configure: searching for an external BLAS
configure: searching for BLAS in default libraries
checking for dgemm_... no
configure: searching for OpenBLAS
checking for sgemm_ in -lopenblas... no
configure: searching for BLIS
checking for sgemm_ in -lblis... no
configure: searching for ATLAS
checking for ATL_xerbla in -latlas... no
configure: searching for PhiPACK
checking for dgemm_ in -lblas... yes
checking for dgemm_ in -ldgemm... no
configure: searching for IBM ESSL
checking for dgemm_ in -lblas... (cached) yes
checking for dgemm_ in -lessl... no
configure: searching for generic BLAS library
checking for dgemm_ in -lblas... (cached) yes
checking whether double complex BLAS can be used... yes
checking whether the BLAS is complete... yes
checking for dpstrf_... no
checking for dpstrf_ in -llapack... yes
checking for iconv.h... yes
checking for iconv... yes
checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
checking whether iconv accepts "CP1252"... yes
checking for iconvlist... no
checking for iconv... yes
checking for iconv declaration... 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for wchar.h... (cached) yes
checking for wctype.h... yes
checking whether mbrtowc exists and is declared... yes
checking whether wcrtomb exists and is declared... yes
checking whether wcscoll exists and is declared... yes
checking whether wcsftime exists and is declared... yes
checking whether wcstod exists and is declared... yes
checking whether mbstowcs exists and is declared... yes
checking whether wcstombs exists and is declared... yes
checking whether wctrans exists and is declared... yes
checking whether wctype exists and is declared... yes
checking whether iswctype exists and is declared... yes
checking whether wcwidth exists and is declared... yes
checking whether wcswidth exists and is declared... yes
checking for wctrans_t... yes
checking for mbstate_t... yes
checking for ICU... yes
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking for X11/Intrinsic.h... yes
checking for XtToolkitInitialize in -lXt... yes
using X11 ... yes
checking for KeySym... yes
checking for X11/Xmu/Atoms.h... no
checking whether pkg-config knows about cairo and pango... yes
checking whether cairo including pango is >= 1.2 and works... yes
checking for tclConfig.sh... no
checking for tclConfig.sh in library (sub)directories... /usr/lib/tcl8.6/tclConfig.sh
checking for tkConfig.sh... no
checking for tkConfig.sh in library (sub)directories... /usr/lib/tk8.6/tkConfig.sh
checking for tcl.h... yes
checking for tk.h... yes
checking whether compiling/linking Tcl/Tk code works... yes
checking for BSD networking... yes
checking for rpc/types.h... no
checking for tirpc/rpc/types.h... yes
checking for tirpc/rpc/xdr.h... yes
checking for XDR library... -ltirpc
checking for XDR support... yes
checking for inflateInit2_ in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.2.5... yes
checking whether zlib support suffices... yes
checking for BZ2_bzlibVersion in -lbz2... yes
checking for bzlib.h... yes
checking if bzip2 version >= 1.0.6... yes
checking whether bzip2 support suffices... yes
checking for lzma_version_number in -llzma... yes
checking for lzma.h... yes
checking if lzma version >= 5.0.3... yes
checking for libdeflate.h... yes
checking for libdeflate_alloc_compressor in -ldeflate... yes
yes
checking for pcre2.h... yes
checking for pcre2_compile_8 in -lpcre2-8... yes
checking if PCRE2 has Unicode support... yes
checking whether PCRE support suffices... yes
checking for curl-config... /usr/bin/curl-config
checking libcurl version ... 8.13.0-rc3
checking for curl/curl.h... yes
checking if libcurl is >= 7.28.0... yes
checking if libcurl supports https... yes
checking if pkg-config knows about libjpeg... yes
checking if jpeglib version >= 6b... yes
checking for jpeg_destroy_compress in -ljpeg... yes
checking if pkg-config knows about libpng... yes
checking if libpng version >= 1.2.7... yes
checking for png_create_write_struct in -lpng... yes
checking if pkg-config knows about libtiff... yes
checking for tiffio.h... yes
checking for TIFFOpen in -ltiff... yes
checking whether leap seconds are treated according to POSIX... yes
checking for inline... inline
checking for struct stat.st_atim.tv_nsec... yes
checking whether struct stat.st_atim is of type struct timespec... yes
checking for setitimer... yes
checking for gcc option to enable large file support... none needed
checking for declarations of fseeko and ftello... yes
checking whether KERN_USRSTACK sysctl is supported... no
checking for visible __lib_stack_end... yes
checking for paperconf... /usr/bin/paperconf
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .f95 files... none
checking for gfortran option to support OpenMP... (cached) -fopenmp
checking whether NLS is requested... yes

Configuring src/extra/intl directory
checking for a race-free mkdir -p... /bin/mkdir -p
checking whether we are using the GNU C Library 2 or newer... yes
checking for ranlib... (cached) ranlib
checking for simple visibility declarations... yes
checking for stdint.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking whether integer division by zero raises SIGFPE... no
checking for inttypes.h... yes
checking for unsigned long long int... yes
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for ld used by gcc... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking for shared library run path origin... done
checking whether imported symbols can be declared weak... yes
checking for multithread API to use... none
checking for argz.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for getcwd... yes
checking for getegid... yes
checking for geteuid... yes
checking for getgid... yes
checking for getuid... yes
checking for mempcpy... (cached) yes
checking for munmap... yes
checking for stpcpy... (cached) yes
checking for strcasecmp... yes
checking for strdup... (cached) yes
checking for strtoul... yes
checking for tsearch... yes
checking for argz_count... yes
checking for argz_stringify... yes
checking for argz_next... yes
checking for __fsetlocking... yes
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... yes
checking for iconv... (cached) yes
checking for iconv declaration... (cached) 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for NL_LOCALE_NAME macro... yes
checking for bison... bison
checking version of bison... 3.8.2, ok
checking for long long int... yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking whether we are using the GNU C Library 2.1 or newer... yes
checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
checking for stdint.h... (cached) yes
checking for CFPreferencesCopyAppValue... no
checking for CFLocaleCopyCurrent... no
checking for ptrdiff_t... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for asprintf... yes
checking for fwprintf... yes
checking for putenv... (cached) yes
checking for setenv... yes
checking for setlocale... yes
checking for snprintf... yes
checking for wcslen... yes
checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether getc_unlocked is declared... yes
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for CFPreferencesCopyAppValue... (cached) no
checking for CFLocaleCopyCurrent... (cached) no
checking whether included gettext is requested... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
Finished configuring src/extra/intl directory

checking whether OpenMP SIMD reduction is supported... yes
using as R_SHELL for scripts ... /bin/bash
configure: creating ./config.status
config.status: creating Makeconf
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating doc/html/Makefile
config.status: creating doc/manual/Makefile
config.status: creating etc/Makefile
config.status: creating etc/Makeconf
config.status: creating etc/Renviron
config.status: creating etc/javaconf
config.status: creating etc/ldpaths
config.status: creating m4/Makefile
config.status: creating po/Makefile
config.status: creating share/Makefile
config.status: creating src/Makefile
config.status: creating src/appl/Makefile
config.status: creating src/extra/Makefile
config.status: creating src/extra/blas/Makefile
config.status: creating src/extra/intl/Makefile
config.status: creating src/extra/tre/Makefile
config.status: creating src/extra/tzone/Makefile
config.status: creating src/extra/xdr/Makefile
config.status: creating src/include/Makefile
config.status: creating src/include/Rmath.h0
config.status: creating src/include/R_ext/Makefile
config.status: creating src/library/Recommended/Makefile
config.status: creating src/library/Makefile
config.status: creating src/library/base/DESCRIPTION
config.status: creating src/library/base/Makefile
config.status: creating src/library/compiler/DESCRIPTION
config.status: creating src/library/compiler/Makefile
config.status: creating src/library/datasets/DESCRIPTION
config.status: creating src/library/datasets/Makefile
config.status: creating src/library/graphics/DESCRIPTION
config.status: creating src/library/graphics/Makefile
config.status: creating src/library/graphics/src/Makefile
config.status: creating src/library/grDevices/DESCRIPTION
config.status: creating src/library/grDevices/Makefile
config.status: creating src/library/grDevices/src/Makefile
config.status: creating src/library/grDevices/src/cairo/Makefile
config.status: creating src/library/grid/DESCRIPTION
config.status: creating src/library/grid/Makefile
config.status: creating src/library/grid/src/Makefile
config.status: creating src/library/methods/DESCRIPTION
config.status: creating src/library/methods/Makefile
config.status: creating src/library/methods/src/Makefile
config.status: creating src/library/parallel/DESCRIPTION
config.status: creating src/library/parallel/Makefile
config.status: creating src/library/parallel/src/Makefile
config.status: creating src/library/profile/Makefile
config.status: creating src/library/stats/DESCRIPTION
config.status: creating src/library/stats/Makefile
config.status: creating src/library/stats/src/Makefile
config.status: creating src/library/stats4/DESCRIPTION
config.status: creating src/library/stats4/Makefile
config.status: creating src/library/splines/DESCRIPTION
config.status: creating src/library/splines/Makefile
config.status: creating src/library/splines/src/Makefile
config.status: creating src/library/tcltk/DESCRIPTION
config.status: creating src/library/tcltk/Makefile
config.status: creating src/library/tcltk/src/Makefile
config.status: creating src/library/tools/DESCRIPTION
config.status: creating src/library/tools/Makefile
config.status: creating src/library/tools/src/Makefile
config.status: creating src/library/translations/DESCRIPTION
config.status: creating src/library/translations/Makefile
config.status: creating src/library/utils/DESCRIPTION
config.status: creating src/library/utils/Makefile
config.status: creating src/library/utils/src/Makefile
config.status: creating src/main/Makefile
config.status: creating src/modules/Makefile
config.status: creating src/modules/X11/Makefile
config.status: creating src/modules/internet/Makefile
config.status: creating src/modules/lapack/Makefile
config.status: creating src/nmath/Makefile
config.status: creating src/nmath/standalone/Makefile
config.status: creating src/scripts/Makefile
config.status: creating src/scripts/R.sh
config.status: creating src/scripts/Rcmd
config.status: creating src/scripts/javareconf
config.status: creating src/scripts/mkinstalldirs
config.status: creating src/scripts/pager
config.status: creating src/scripts/rtags
config.status: creating src/unix/Makefile
config.status: creating tests/Makefile
config.status: creating tests/Embedding/Makefile
config.status: creating tests/Examples/Makefile
config.status: creating tools/Makefile
config.status: creating src/include/config.h
config.status: executing libtool commands
config.status: executing stamp-h commands

R is now configured for x86_64-pc-linux-gnu

  Source directory:            .
  Installation directory:      /usr

  C compiler:                  gcc  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2
  Fortran fixed-form compiler: gfortran  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection

  Default C++ compiler:        g++ -std=gnu++17  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2
  C++11 compiler:              g++ -std=gnu++11  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2
  C++14 compiler:              g++ -std=gnu++14  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2
  C++17 compiler:              g++ -std=gnu++17  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2
  C++20 compiler:              g++ -std=gnu++20  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2
  C++23 compiler:              g++ -std=gnu++23  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2
  Fortran free-form compiler:  gfortran  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection
  Obj-C compiler:	        

  Interfaces supported:        X11, tcltk
  External libraries:          pcre2, readline, BLAS(generic), LAPACK(generic), curl, libdeflate
  Additional capabilities:     PNG, JPEG, TIFF, NLS, cairo, ICU
  Options enabled:             shared R library, R profiling, memory profiling, libdeflate for lazyload

  Capabilities skipped:        
  Options not enabled:         shared BLAS

  Recommended packages:        no

touch configure-stamp
*** make-arch ***
/usr/bin/make		CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2"			\
		CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2"			\
		FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection"			\
		FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection"			\
		CC=gcc				\
		CXX=g++			\
		F77=gfortran			\
		LDFLAGS="-Wl,-z,relro"			\
		PKG_BUILT_STAMP=""""	\
		R_GZIPCMD="/bin/gzip -n"		\
		R
make[1]: Entering directory '/build/reproducible-path/r-base-4.4.3'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/m4'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tools'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc/html'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc/html'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/etc'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/etc'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/share'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/share'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/src'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/scripts'
creating src/scripts/R.fe
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/scripts'
mkdir -p -- ../../bin
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/scripts'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/scripts'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/include'
mkdir -p -- ../../include
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/include/R_ext'
mkdir -p -- ../../../include/R_ext
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/include/R_ext'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/include'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
making regcomp.d from regcomp.c
making regerror.d from regerror.c
making regexec.d from regexec.c
making tre-ast.d from tre-ast.c
making tre-compile.d from tre-compile.c
making tre-match-approx.d from tre-match-approx.c
making tre-match-backtrack.d from tre-match-backtrack.c
making tre-match-parallel.d from tre-match-parallel.c
making tre-mem.d from tre-mem.c
making tre-parse.d from tre-parse.c
making tre-stack.d from tre-stack.c
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c regcomp.c -o regcomp.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c regerror.c -o regerror.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c regexec.c -o regexec.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-ast.c -o tre-ast.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-compile.c -o tre-compile.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-mem.c -o tre-mem.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-parse.c -o tre-parse.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-stack.c -o tre-stack.o
ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o
ranlib libtre.a
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/appl'
making integrate.d from integrate.c
making interv.d from interv.c
making maxcol.d from maxcol.c
making optim.d from optim.c
making pretty.d from pretty.c
making uncmin.d from uncmin.c
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/appl'
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c integrate.c -o integrate.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c interv.c -o interv.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c maxcol.c -o maxcol.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c optim.c -o optim.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pretty.c -o pretty.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c uncmin.c -o uncmin.o
gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dchdc.f -o dchdc.o
gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dpbfa.f -o dpbfa.o
gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dpbsl.f -o dpbsl.o
gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dpoco.f -o dpoco.o
gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dpodi.f -o dpodi.o
gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dpofa.f -o dpofa.o
gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dposl.f -o dposl.o
gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dqrdc.f -o dqrdc.o
gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dqrdc2.f -o dqrdc2.o
gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dqrls.f -o dqrls.o
gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dqrsl.f -o dqrsl.o
gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dqrutl.f -o dqrutl.o
gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dsvdc.f -o dsvdc.o
gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dtrco.f -o dtrco.o
gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dtrsl.f -o dtrsl.o
ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o  
ranlib libappl.a
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/appl'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/appl'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/nmath'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making qnbinom_mu.d from qnbinom_mu.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/nmath'
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c mlutils.c -o mlutils.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c d1mach.c -o d1mach.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c i1mach.c -o i1mach.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c fmax2.c -o fmax2.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c fmin2.c -o fmin2.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c fprec.c -o fprec.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c fround.c -o fround.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c ftrunc.c -o ftrunc.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c sign.c -o sign.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c fsign.c -o fsign.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c imax2.c -o imax2.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c imin2.c -o imin2.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c chebyshev.c -o chebyshev.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c log1p.c -o log1p.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c lgammacor.c -o lgammacor.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c gammalims.c -o gammalims.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c stirlerr.c -o stirlerr.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c bd0.c -o bd0.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c gamma.c -o gamma.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c lgamma.c -o lgamma.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c gamma_cody.c -o gamma_cody.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c beta.c -o beta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c lbeta.c -o lbeta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c polygamma.c -o polygamma.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c cospi.c -o cospi.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_i.c -o bessel_i.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_j.c -o bessel_j.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_k.c -o bessel_k.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_y.c -o bessel_y.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c choose.c -o choose.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c snorm.c -o snorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c sexp.c -o sexp.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dgamma.c -o dgamma.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pgamma.c -o pgamma.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qgamma.c -o qgamma.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rgamma.c -o rgamma.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dbeta.c -o dbeta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pbeta.c -o pbeta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qbeta.c -o qbeta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rbeta.c -o rbeta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dunif.c -o dunif.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c punif.c -o punif.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qunif.c -o qunif.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c runif.c -o runif.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dnorm.c -o dnorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pnorm.c -o pnorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qnorm.c -o qnorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rnorm.c -o rnorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dlnorm.c -o dlnorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c plnorm.c -o plnorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qlnorm.c -o qlnorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rlnorm.c -o rlnorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c df.c -o df.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pf.c -o pf.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qf.c -o qf.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rf.c -o rf.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dnf.c -o dnf.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dt.c -o dt.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pt.c -o pt.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qt.c -o qt.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rt.c -o rt.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dnt.c -o dnt.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dchisq.c -o dchisq.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pchisq.c -o pchisq.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qchisq.c -o qchisq.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rchisq.c -o rchisq.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rnchisq.c -o rnchisq.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dbinom.c -o dbinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pbinom.c -o pbinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qbinom.c -o qbinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rbinom.c -o rbinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rmultinom.c -o rmultinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dcauchy.c -o dcauchy.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pcauchy.c -o pcauchy.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qcauchy.c -o qcauchy.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rcauchy.c -o rcauchy.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dexp.c -o dexp.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pexp.c -o pexp.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qexp.c -o qexp.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rexp.c -o rexp.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dgeom.c -o dgeom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pgeom.c -o pgeom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qgeom.c -o qgeom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rgeom.c -o rgeom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dhyper.c -o dhyper.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c phyper.c -o phyper.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qhyper.c -o qhyper.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rhyper.c -o rhyper.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dnbinom.c -o dnbinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pnbinom.c -o pnbinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbinom.c -o qnbinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbinom_mu.c -o qnbinom_mu.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rnbinom.c -o rnbinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dpois.c -o dpois.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c ppois.c -o ppois.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qpois.c -o qpois.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rpois.c -o rpois.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dweibull.c -o dweibull.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pweibull.c -o pweibull.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qweibull.c -o qweibull.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rweibull.c -o rweibull.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dlogis.c -o dlogis.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c plogis.c -o plogis.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qlogis.c -o qlogis.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rlogis.c -o rlogis.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dnchisq.c -o dnchisq.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pnchisq.c -o pnchisq.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qnchisq.c -o qnchisq.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dnbeta.c -o dnbeta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pnbeta.c -o pnbeta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbeta.c -o qnbeta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pnf.c -o pnf.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pnt.c -o pnt.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qnf.c -o qnf.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qnt.c -o qnt.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c ptukey.c -o ptukey.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qtukey.c -o qtukey.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c toms708.c -o toms708.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c wilcox.c -o wilcox.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c signrank.c -o signrank.o
ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
ranlib libnmath.a
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/nmath'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/nmath'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/unix'
config.status: creating src/unix/Makefile
making Rembedded.d from Rembedded.c
making dynload.d from dynload.c
making system.d from system.c
making sys-unix.d from sys-unix.c
making sys-std.d from sys-std.c
making X11.d from X11.c
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/unix'
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c Rembedded.c -o Rembedded.o
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dynload.c -o dynload.o
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c system.c -o system.o
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2  -c sys-unix.c -o sys-unix.o
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c sys-std.c -o sys-std.o
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c X11.c -o X11.o
ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
ranlib libunix.a
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/unix'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/unix'
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DR_HOME='"/build/reproducible-path/r-base-4.4.3"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/unix'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/unix'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
config.status: creating src/main/Makefile
making CommandLineArgs.d from CommandLineArgs.c
making Rdynload.d from Rdynload.c
making Renviron.d from Renviron.c
making RNG.d from RNG.c
making agrep.d from agrep.c
making altclasses.d from altclasses.c
making altrep.d from altrep.c
making apply.d from apply.c
making arithmetic.d from arithmetic.c
making array.d from array.c
making attrib.d from attrib.c
making bind.d from bind.c
making builtin.d from builtin.c
making character.d from character.c
making clippath.d from clippath.c
making coerce.d from coerce.c
making colors.d from colors.c
making complex.d from complex.c
making connections.d from connections.c
making context.d from context.c
making cum.d from cum.c
making dcf.d from dcf.c
making datetime.d from datetime.c
making debug.d from debug.c
making deparse.d from deparse.c
making devices.d from devices.c
making dotcode.d from dotcode.c
making dounzip.d from dounzip.c
making dstruct.d from dstruct.c
making duplicate.d from duplicate.c
making edit.d from edit.c
making engine.d from engine.c
making envir.d from envir.c
making errors.d from errors.c
making eval.d from eval.c
making flexiblas.d from flexiblas.c
making format.d from format.c
making gevents.d from gevents.c
making gram.d from gram.c
making gram-ex.d from gram-ex.c
making graphics.d from graphics.c
making grep.d from grep.c
making identical.d from identical.c
making inlined.d from inlined.c
making inspect.d from inspect.c
making internet.d from internet.c
making iosupport.d from iosupport.c
making lapack.d from lapack.c
making list.d from list.c
making localecharset.d from localecharset.c
making logic.d from logic.c
making machine.d from machine.c
making main.d from main.c
making mapply.d from mapply.c
making mask.d from mask.c
making match.d from match.c
making memory.d from memory.c
making names.d from names.c
making objects.d from objects.c
making options.d from options.c
making paste.d from paste.c
making patterns.d from patterns.c
making platform.d from platform.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making plotmath.d from plotmath.c
making print.d from print.c
making printarray.d from printarray.c
making printvector.d from printvector.c
making printutils.d from printutils.c
making qsort.d from qsort.c
making radixsort.d from radixsort.c
making random.d from random.c
making raw.d from raw.c
making registration.d from registration.c
making relop.d from relop.c
making rlocale.d from rlocale.c
making saveload.d from saveload.c
making scan.d from scan.c
making seq.d from seq.c
making serialize.d from serialize.c
making sort.d from sort.c
making source.d from source.c
making split.d from split.c
making sprintf.d from sprintf.c
making startup.d from startup.c
making subassign.d from subassign.c
making subscript.d from subscript.c
making subset.d from subset.c
making summary.d from summary.c
making sysutils.d from sysutils.c
making times.d from times.c
making unique.d from unique.c
making util.d from util.c
making version.d from version.c
making g_alab_her.d from g_alab_her.c
making g_cntrlify.d from g_cntrlify.c
making g_fontdb.d from g_fontdb.c
making g_her_glyph.d from g_her_glyph.c
making Rmain.d from Rmain.c
making alloca.d from alloca.c
making mkdtemp.d from mkdtemp.c
making strdup.d from strdup.c
making strncasecmp.d from strncasecmp.c
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c CommandLineArgs.c -o CommandLineArgs.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c Rdynload.c -o Rdynload.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c Renviron.c -o Renviron.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c RNG.c -o RNG.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c agrep.c -o agrep.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c altclasses.c -o altclasses.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c altrep.c -o altrep.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c apply.c -o apply.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c arithmetic.c -o arithmetic.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c array.c -o array.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c attrib.c -o attrib.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c bind.c -o bind.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c builtin.c -o builtin.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c character.c -o character.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c clippath.c -o clippath.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c coerce.c -o coerce.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c colors.c -o colors.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c complex.c -o complex.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c connections.c -o connections.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c context.c -o context.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c cum.c -o cum.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dcf.c -o dcf.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c datetime.c -o datetime.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c debug.c -o debug.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c deparse.c -o deparse.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c devices.c -o devices.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dotcode.c -o dotcode.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dounzip.c -o dounzip.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dstruct.c -o dstruct.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c duplicate.c -o duplicate.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c edit.c -o edit.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c engine.c -o engine.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c envir.c -o envir.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c errors.c -o errors.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c eval.c -o eval.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c flexiblas.c -o flexiblas.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c format.c -o format.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c gevents.c -o gevents.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c gram.c -o gram.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c gram-ex.c -o gram-ex.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c graphics.c -o graphics.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c grep.c -o grep.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c identical.c -o identical.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c inlined.c -o inlined.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c inspect.c -o inspect.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c internet.c -o internet.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c iosupport.c -o iosupport.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c lapack.c -o lapack.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c list.c -o list.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c localecharset.c -o localecharset.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c logic.c -o logic.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c machine.c -o machine.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c main.c -o main.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c mapply.c -o mapply.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c mask.c -o mask.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c match.c -o match.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c memory.c -o memory.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c names.c -o names.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c objects.c -o objects.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c options.c -o options.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c paste.c -o paste.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c patterns.c -o patterns.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c platform.c -o platform.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c plot.c -o plot.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c plot3d.c -o plot3d.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c plotmath.c -o plotmath.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c print.c -o print.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c printarray.c -o printarray.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c printvector.c -o printvector.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c printutils.c -o printutils.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c qsort.c -o qsort.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c radixsort.c -o radixsort.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c random.c -o random.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c raw.c -o raw.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c registration.c -o registration.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c relop.c -o relop.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rlocale.c -o rlocale.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c saveload.c -o saveload.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c scan.c -o scan.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c seq.c -o seq.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c serialize.c -o serialize.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c sort.c -o sort.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c source.c -o source.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c split.c -o split.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c sprintf.c -o sprintf.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c startup.c -o startup.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c subassign.c -o subassign.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c subscript.c -o subscript.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c subset.c -o subset.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c summary.c -o summary.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c sysutils.c -o sysutils.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c times.c -o times.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c unique.c -o unique.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c util.c -o util.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c version.c -o version.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c g_alab_her.c -o g_alab_her.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c g_cntrlify.c -o g_cntrlify.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c g_fontdb.c -o g_fontdb.o
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c g_her_glyph.c -o g_her_glyph.o
gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c xxxpr.f -o xxxpr.o
gcc -shared -fopenmp -Wl,-z,relro  -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o clippath.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o flexiblas.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o machine.o main.o mapply.o mask.o match.o memory.o names.o objects.o options.o paste.o patterns.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o   `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a    -lblas -lgfortran -lm -lquadmath   -lreadline  -lpcre2-8 -ldeflate -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n   
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
mkdir -p -- /build/reproducible-path/r-base-4.4.3/bin/exec
mkdir -p -- /build/reproducible-path/r-base-4.4.3/lib
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c Rmain.c -o Rmain.o
gcc -Wl,--export-dynamic -fopenmp  -L"../../lib" -Wl,-z,relro -o R.bin Rmain.o  -lR 
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/internet'
making Rhttpd.d from Rhttpd.c
making Rsock.d from Rsock.c
making internet.d from internet.c
making libcurl.d from libcurl.c
making sock.d from sock.c
making sockconn.d from sockconn.c
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/internet'
gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o
gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c Rsock.c -o Rsock.o
gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c internet.c -o internet.o
gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c libcurl.c -o libcurl.o
gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c sock.c -o sock.o
gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c sockconn.c -o sockconn.o
gcc -shared -L"../../../lib" -Wl,-z,relro -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o sock.o sockconn.o -lcurl -lR  
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/internet'
mkdir -p -- /build/reproducible-path/r-base-4.4.3/modules
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/internet'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/internet'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/internet'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/lapack'
making Lapack.d from Lapack.c
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/lapack'
gcc -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c Lapack.c -o Lapack.o
gcc -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c  ../../main/flexiblas.c -o flexiblas.o
gcc -shared -L"../../../lib" -Wl,-z,relro -o lapack.so  Lapack.o  flexiblas.o -lR  -llapack -lblas -lgfortran -lm -lquadmath
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/lapack'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/lapack'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/lapack'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/lapack'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
making devX11.d from devX11.c
making rotated.d from rotated.c
making rbitmap.d from rbitmap.c
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
gcc -I/usr/include/libpng16  -I/usr/include/x86_64-linux-gnu -I/usr/include/webp  -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c devX11.c -o devX11.o
gcc -I/usr/include/libpng16  -I/usr/include/x86_64-linux-gnu -I/usr/include/webp  -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rotated.c -o rotated.o
gcc -I/usr/include/libpng16  -I/usr/include/x86_64-linux-gnu -I/usr/include/webp  -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rbitmap.c -o rbitmap.o
gcc -shared -L"../../../lib" -Wl,-z,relro -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff  -ljpeg  -lpng16  -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lz -lpng16 -lcairo -lX11 -lXext  -lX11 -lXt  -lR -lm 
gcc -I/usr/include/libpng16  -I/usr/include/x86_64-linux-gnu -I/usr/include/webp  -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dataentry.c -o dataentry.o
gcc -shared -L"../../../lib" -Wl,-z,relro -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lz -lpng16 -lcairo -lX11 -lXext  -lX11 -lXt  -lR -lm 
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library'
mkdir -p -- ../../library
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/profile'
building system startup profile
mkdir -p -- ../../../library/base/R
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/profile'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/translations'
building package 'translations'
mkdir -p -- ../../../library/translations
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/translations'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/translations'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/translations'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
building package 'base'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
mkdir -p -- ../../../library/base/demo
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
building package 'tools'
mkdir -p -- ../../../library/tools
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
mkdir -p -- ../../../library/tools/R
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools/src'
making text.d from text.c
making init.d from init.c
making Rmd5.d from Rmd5.c
making md5.d from md5.c
making signals.d from signals.c
making install.d from install.c
making getfmts.d from getfmts.c
making http.d from http.c
making gramLatex.d from gramLatex.c
making gramRd.d from gramRd.c
making pdscan.d from pdscan.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c text.c -o text.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c Rmd5.c -o Rmd5.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c md5.c -o md5.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c signals.c -o signals.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c install.c -o install.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c getfmts.c -o getfmts.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c http.c -o http.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c gramLatex.c -o gramLatex.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c gramRd.c -o gramRd.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pdscan.c -o pdscan.o
gcc -shared -L../../../../lib -Wl,-z,relro -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o pdscan.o -L../../../../lib -lR
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools/src'
mkdir -p -- ../../../../library/tools/libs
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
building package 'compiler'
mkdir -p -- ../../../library/compiler
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
mkdir -p -- ../../../library/compiler/R
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
byte-compiling package 'compiler'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
byte-compiling package 'base'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
byte-compiling package 'tools'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
building package 'utils'
mkdir -p -- ../../../library/utils
mkdir -p -- ../../../library/utils/doc
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
mkdir -p -- ../../../library/utils/R
mkdir -p -- ../../../library/utils/Sweave
mkdir -p -- ../../../library/utils/misc
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils/src'
making init.d from init.c
making io.d from io.c
making size.d from size.c
making sock.d from sock.c
making stubs.d from stubs.c
making utils.d from utils.c
making hashtab.d from hashtab.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c io.c -o io.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c size.c -o size.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c sock.c -o sock.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c stubs.c -o stubs.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c hashtab.c -o hashtab.o
gcc -shared -L../../../../lib -Wl,-z,relro -o utils.so init.o io.o size.o sock.o stubs.o utils.o hashtab.o -L../../../../lib -lR
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils/src'
mkdir -p -- ../../../../library/utils/libs
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
byte-compiling package 'utils'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
building package 'grDevices'
mkdir -p -- ../../../library/grDevices
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
mkdir -p -- ../../../library/grDevices/R
mkdir -p -- ../../../library/grDevices/afm
mkdir -p -- ../../../library/grDevices/enc
mkdir -p -- ../../../library/grDevices/fonts/Roboto
mkdir -p -- ../../../library/grDevices/fonts/Montserrat/static
mkdir -p -- ../../../library/grDevices/icc
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src'
making axis_scales.d from axis_scales.c
making chull.d from chull.c
making devices.d from devices.c
making init.d from init.c
making stubs.d from stubs.c
making colors.d from colors.c
making clippath.d from clippath.c
making patterns.d from patterns.c
making mask.d from mask.c
making group.d from group.c
making devCairo.d from devCairo.c
making devPicTeX.d from devPicTeX.c
making devPS.d from devPS.c
making devQuartz.d from devQuartz.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c axis_scales.c -o axis_scales.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c chull.c -o chull.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c devices.c -o devices.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c stubs.c -o stubs.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c colors.c -o colors.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c clippath.c -o clippath.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c patterns.c -o patterns.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c mask.c -o mask.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c group.c -o group.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c devCairo.c -o devCairo.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c devPicTeX.c -o devPicTeX.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c devPS.c -o devPS.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c devQuartz.c -o devQuartz.o
gcc -shared -L../../../../lib -Wl,-z,relro -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o clippath.o patterns.o mask.o group.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src'
mkdir -p -- ../../../../library/grDevices/libs
make[8]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
making cairoBM.d from cairoBM.c
make[9]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[10]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
gcc -I. -I../../../../../src/include -I../../../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../../../src/modules/X11  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c cairoBM.c -o cairoBM.o
gcc -shared -L"../../../../../lib" -Wl,-z,relro -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff  -ljpeg  -lpng16  -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lz -lcairo -lpng16  -L"../../../../../lib" -lR -lm 
make[10]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
byte-compiling package 'grDevices'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
building package 'graphics'
mkdir -p -- ../../../library/graphics
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
mkdir -p -- ../../../library/graphics/R
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics/src'
making init.d from init.c
making base.d from base.c
making graphics.d from graphics.c
making par.d from par.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making stem.d from stem.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c base.c -o base.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c graphics.c -o graphics.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c par.c -o par.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c plot.c -o plot.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c plot3d.c -o plot3d.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c stem.c -o stem.o
gcc -shared -L../../../../lib -Wl,-z,relro -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics/src'
mkdir -p -- ../../../../library/graphics/libs
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
byte-compiling package 'graphics'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
building package 'stats'
mkdir -p -- ../../../library/stats
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
mkdir -p -- ../../../library/stats/R
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats/src'
making init.d from init.c
making kmeans.d from kmeans.c
making ansari.d from ansari.c
making bandwidths.d from bandwidths.c
making chisqsim.d from chisqsim.c
making d2x2xk.d from d2x2xk.c
making fexact.d from fexact.c
making kendall.d from kendall.c
making ks.d from ks.c
making line.d from line.c
making smooth.d from smooth.c
making prho.d from prho.c
making swilk.d from swilk.c
making ksmooth.d from ksmooth.c
making loessc.d from loessc.c
making monoSpl.d from monoSpl.c
making isoreg.d from isoreg.c
making Srunmed.d from Srunmed.c
making dblcen.d from dblcen.c
making distance.d from distance.c
making hclust-utils.d from hclust-utils.c
making nls.d from nls.c
making rWishart.d from rWishart.c
making HoltWinters.d from HoltWinters.c
making PPsum.d from PPsum.c
making arima.d from arima.c
making burg.d from burg.c
making filter.d from filter.c
making mAR.d from mAR.c
making pacf.d from pacf.c
making starma.d from starma.c
making port.d from port.c
making family.d from family.c
making sbart.d from sbart.c
making approx.d from approx.c
making loglin.d from loglin.c
making lowess.d from lowess.c
making massdist.d from massdist.c
making splines.d from splines.c
making lm.d from lm.c
making complete_cases.d from complete_cases.c
making cov.d from cov.c
making deriv.d from deriv.c
making fft.d from fft.c
making fourier.d from fourier.c
making model.d from model.c
making optim.d from optim.c
making optimize.d from optimize.c
making integrate.d from integrate.c
making random.d from random.c
making distn.d from distn.c
making zeroin.d from zeroin.c
making rcont.d from rcont.c
making influence.d from influence.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c kmeans.c -o kmeans.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c ansari.c -o ansari.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c bandwidths.c -o bandwidths.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c chisqsim.c -o chisqsim.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c d2x2xk.c -o d2x2xk.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c fexact.c -o fexact.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c kendall.c -o kendall.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c ks.c -o ks.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c line.c -o line.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c smooth.c -o smooth.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c prho.c -o prho.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c swilk.c -o swilk.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c ksmooth.c -o ksmooth.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c loessc.c -o loessc.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c monoSpl.c -o monoSpl.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c isoreg.c -o isoreg.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c Srunmed.c -o Srunmed.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c dblcen.c -o dblcen.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c distance.c -o distance.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c hclust-utils.c -o hclust-utils.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c nls.c -o nls.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rWishart.c -o rWishart.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c HoltWinters.c -o HoltWinters.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c PPsum.c -o PPsum.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c arima.c -o arima.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c burg.c -o burg.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c filter.c -o filter.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c mAR.c -o mAR.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c pacf.c -o pacf.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c starma.c -o starma.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c port.c -o port.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c family.c -o family.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c sbart.c -o sbart.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c approx.c -o approx.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c loglin.c -o loglin.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c lowess.c -o lowess.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c massdist.c -o massdist.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c splines.c -o splines.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c lm.c -o lm.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c complete_cases.c -o complete_cases.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c cov.c -o cov.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c deriv.c -o deriv.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c fft.c -o fft.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c fourier.c -o fourier.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c model.c -o model.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c optim.c -o optim.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c optimize.c -o optimize.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c integrate.c -o integrate.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c random.c -o random.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c distn.c -o distn.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c zeroin.c -o zeroin.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rcont.c -o rcont.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c influence.c -o influence.o
gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c bsplvd.f -o bsplvd.o
gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c bvalue.f -o bvalue.o
gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c bvalus.f -o bvalus.o
gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c loessf.f -o loessf.o
gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c ppr.f -o ppr.o
gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c qsbart.f -o qsbart.o
gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sgram.f -o sgram.o
gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sinerp.f -o sinerp.o
gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sslvrg.f -o sslvrg.o
gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c stxwx.f -o stxwx.o
gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c hclust.f -o hclust.o
gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c kmns.f -o kmns.o
gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c eureka.f -o eureka.o
gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c stl.f -o stl.o
gfortran -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -msse2 -mfpmath=sse  -c portsrc.f -o portsrc.o
gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c lminfl.f -o lminfl.o
gcc -shared -L../../../../lib -Wl,-z,relro -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L../../../../lib -lR
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats/src'
mkdir -p -- ../../../../library/stats/libs
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
byte-compiling package 'stats'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/datasets'
building package 'datasets'
mkdir -p -- ../../../library/datasets
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/datasets'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/datasets'
mkdir -p -- ../../../library/datasets/data
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/datasets'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
building package 'methods'
mkdir -p -- ../../../library/methods
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
mkdir -p -- ../../../library/methods/R
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods/src'
making do_substitute_direct.d from do_substitute_direct.c
making init.d from init.c
making methods_list_dispatch.d from methods_list_dispatch.c
making slot.d from slot.c
making class_support.d from class_support.c
making tests.d from tests.c
making utils.d from utils.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c do_substitute_direct.c -o do_substitute_direct.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c methods_list_dispatch.c -o methods_list_dispatch.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c slot.c -o slot.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c class_support.c -o class_support.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c tests.c -o tests.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o
gcc -shared -L../../../../lib -Wl,-z,relro -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods/src'
mkdir -p -- ../../../../library/methods/libs
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
byte-compiling package 'methods'
initializing class and method definitions ... done
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
building package 'grid'
mkdir -p -- ../../../library/grid
mkdir -p -- ../../../library/grid/doc
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
mkdir -p -- ../../../library/grid/R
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid/src'
making clippath.d from clippath.c
making gpar.d from gpar.c
making grid.d from grid.c
making just.d from just.c
making layout.d from layout.c
making mask.d from mask.c
making matrix.d from matrix.c
making path.d from path.c
making register.d from register.c
making state.d from state.c
making typeset.d from typeset.c
making unit.d from unit.c
making util.d from util.c
making viewport.d from viewport.c
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c clippath.c -o clippath.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c gpar.c -o gpar.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c grid.c -o grid.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c just.c -o just.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c layout.c -o layout.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c mask.c -o mask.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c matrix.c -o matrix.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c path.c -o path.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c register.c -o register.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c state.c -o state.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c typeset.c -o typeset.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c unit.c -o unit.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c util.c -o util.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c viewport.c -o viewport.o
gcc -shared -L../../../../lib -Wl,-z,relro -o grid.so clippath.o gpar.o grid.o just.o layout.o mask.o matrix.o path.o register.o state.o typeset.o unit.o util.o viewport.o -L../../../../lib -lR
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid/src'
mkdir -p -- ../../../../library/grid/libs
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
byte-compiling package 'grid'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
building package 'splines'
mkdir -p -- ../../../library/splines
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
mkdir -p -- ../../../library/splines/R
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines/src'
making splines.d from splines.c
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c splines.c -o splines.o
gcc -shared -L../../../../lib -Wl,-z,relro -o splines.so splines.o -L../../../../lib -lR
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines/src'
mkdir -p -- ../../../../library/splines/libs
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
byte-compiling package 'splines'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
building package 'stats4'
mkdir -p -- ../../../library/stats4
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
mkdir -p -- ../../../library/stats4/R
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
byte-compiling package 'stats4'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
building package 'tcltk'
mkdir -p -- ../../../library/tcltk/R
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
mkdir -p -- ../../../library/tcltk/exec
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk/src'
making init.d from init.c
making tcltk.d from tcltk.c
making tcltk_unix.d from tcltk_unix.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c tcltk.c -o tcltk.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c tcltk_unix.c -o tcltk_unix.o
gcc -shared -L../../../../lib -Wl,-z,relro -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib/x86_64-linux-gnu -ltcl8.6 -L/usr/lib/x86_64-linux-gnu -ltk8.6 -lX11 -lXss -lXext -lm -L../../../../lib -lR
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk/src'
mkdir -p -- ../../../../library/tcltk/libs
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk/src'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
byte-compiling package 'tcltk'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
building package 'parallel'
mkdir -p -- ../../../library/parallel
mkdir -p -- ../../../library/parallel/doc
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
mkdir -p -- ../../../library/parallel/R
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel/src'
making init.d from init.c
making rngstream.d from rngstream.c
making fork.d from fork.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c rngstream.c -o rngstream.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c fork.c -o fork.o
gcc -shared -L../../../../lib -Wl,-z,relro -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel/src'
mkdir -p -- ../../../../library/parallel/libs
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
byte-compiling package 'parallel'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
you should 'make docs' now ...
make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.3'
(cd src/nmath/standalone;				\
	/usr/bin/make	CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT"		\
		CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT"	\
		FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -D_REENTRANT"	\
		CC=gcc				\
		CXX=g++			\
		F77=gfortran			\
		R_GZIPCMD="/bin/gzip -n"		\
		libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.1 \
		shared static )
make[1]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/nmath/standalone'
(cd ../../include; /usr/bin/make Rmath.h)
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/include'
make[2]: 'Rmath.h' is up to date.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/include'
Copying source files
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/nmath/standalone'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making qnbinom_mu.d from qnbinom_mu.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
making std_unif.d from std_unif.c
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/nmath/standalone'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/nmath/standalone'
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c mlutils.c -o mlutils.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c d1mach.c -o d1mach.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c i1mach.c -o i1mach.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmax2.c -o fmax2.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmin2.c -o fmin2.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fprec.c -o fprec.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fround.c -o fround.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ftrunc.c -o ftrunc.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sign.c -o sign.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fsign.c -o fsign.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imax2.c -o imax2.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imin2.c -o imin2.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c chebyshev.c -o chebyshev.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c log1p.c -o log1p.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgammacor.c -o lgammacor.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gammalims.c -o gammalims.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c stirlerr.c -o stirlerr.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bd0.c -o bd0.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma.c -o gamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgamma.c -o lgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma_cody.c -o gamma_cody.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c beta.c -o beta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lbeta.c -o lbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c polygamma.c -o polygamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c cospi.c -o cospi.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_i.c -o bessel_i.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_j.c -o bessel_j.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_k.c -o bessel_k.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_y.c -o bessel_y.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c choose.c -o choose.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c snorm.c -o snorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sexp.c -o sexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgamma.c -o dgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgamma.c -o pgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgamma.c -o qgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgamma.c -o rgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbeta.c -o dbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbeta.c -o pbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbeta.c -o qbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbeta.c -o rbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dunif.c -o dunif.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c punif.c -o punif.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qunif.c -o qunif.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c runif.c -o runif.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnorm.c -o dnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnorm.c -o pnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnorm.c -o qnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnorm.c -o rnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlnorm.c -o dlnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plnorm.c -o plnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlnorm.c -o qlnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlnorm.c -o rlnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c df.c -o df.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pf.c -o pf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qf.c -o qf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rf.c -o rf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnf.c -o dnf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dt.c -o dt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pt.c -o pt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qt.c -o qt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rt.c -o rt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnt.c -o dnt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dchisq.c -o dchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pchisq.c -o pchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qchisq.c -o qchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rchisq.c -o rchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnchisq.c -o rnchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbinom.c -o dbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbinom.c -o pbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbinom.c -o qbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbinom.c -o rbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rmultinom.c -o rmultinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dcauchy.c -o dcauchy.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pcauchy.c -o pcauchy.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qcauchy.c -o qcauchy.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rcauchy.c -o rcauchy.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dexp.c -o dexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pexp.c -o pexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qexp.c -o qexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rexp.c -o rexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgeom.c -o dgeom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgeom.c -o pgeom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgeom.c -o qgeom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgeom.c -o rgeom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dhyper.c -o dhyper.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c phyper.c -o phyper.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qhyper.c -o qhyper.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rhyper.c -o rhyper.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbinom.c -o dnbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbinom.c -o pnbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom.c -o qnbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom_mu.c -o qnbinom_mu.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnbinom.c -o rnbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dpois.c -o dpois.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ppois.c -o ppois.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qpois.c -o qpois.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rpois.c -o rpois.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dweibull.c -o dweibull.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pweibull.c -o pweibull.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qweibull.c -o qweibull.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rweibull.c -o rweibull.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlogis.c -o dlogis.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plogis.c -o plogis.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlogis.c -o qlogis.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlogis.c -o rlogis.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnchisq.c -o dnchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnchisq.c -o pnchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnchisq.c -o qnchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbeta.c -o dnbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbeta.c -o pnbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbeta.c -o qnbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnf.c -o pnf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnt.c -o pnt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnf.c -o qnf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnt.c -o qnt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ptukey.c -o ptukey.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qtukey.c -o qtukey.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c toms708.c -o toms708.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c wilcox.c -o wilcox.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c signrank.c -o signrank.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c std_unif.c -o std_unif.lo
gcc -shared -fopenmp -Wl,-z,relro -o libRmath.so -Wl,-soname,libRmath.so.1 mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo qnbinom_mu.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/nmath/standalone'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/nmath/standalone'
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c mlutils.c -o mlutils.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c d1mach.c -o d1mach.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c i1mach.c -o i1mach.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmax2.c -o fmax2.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmin2.c -o fmin2.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fprec.c -o fprec.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fround.c -o fround.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ftrunc.c -o ftrunc.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sign.c -o sign.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fsign.c -o fsign.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imax2.c -o imax2.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imin2.c -o imin2.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c chebyshev.c -o chebyshev.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c log1p.c -o log1p.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgammacor.c -o lgammacor.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gammalims.c -o gammalims.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c stirlerr.c -o stirlerr.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bd0.c -o bd0.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma.c -o gamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgamma.c -o lgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma_cody.c -o gamma_cody.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c beta.c -o beta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lbeta.c -o lbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c polygamma.c -o polygamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c cospi.c -o cospi.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_i.c -o bessel_i.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_j.c -o bessel_j.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_k.c -o bessel_k.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_y.c -o bessel_y.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c choose.c -o choose.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c snorm.c -o snorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sexp.c -o sexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgamma.c -o dgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgamma.c -o pgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgamma.c -o qgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgamma.c -o rgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbeta.c -o dbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbeta.c -o pbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbeta.c -o qbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbeta.c -o rbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dunif.c -o dunif.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c punif.c -o punif.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qunif.c -o qunif.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c runif.c -o runif.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnorm.c -o dnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnorm.c -o pnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnorm.c -o qnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnorm.c -o rnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlnorm.c -o dlnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plnorm.c -o plnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlnorm.c -o qlnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlnorm.c -o rlnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c df.c -o df.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pf.c -o pf.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qf.c -o qf.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rf.c -o rf.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnf.c -o dnf.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dt.c -o dt.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pt.c -o pt.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qt.c -o qt.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rt.c -o rt.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnt.c -o dnt.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dchisq.c -o dchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pchisq.c -o pchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qchisq.c -o qchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rchisq.c -o rchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnchisq.c -o rnchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbinom.c -o dbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbinom.c -o pbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbinom.c -o qbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbinom.c -o rbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rmultinom.c -o rmultinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dcauchy.c -o dcauchy.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pcauchy.c -o pcauchy.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qcauchy.c -o qcauchy.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rcauchy.c -o rcauchy.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dexp.c -o dexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pexp.c -o pexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qexp.c -o qexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rexp.c -o rexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgeom.c -o dgeom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgeom.c -o pgeom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgeom.c -o qgeom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgeom.c -o rgeom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dhyper.c -o dhyper.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c phyper.c -o phyper.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qhyper.c -o qhyper.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rhyper.c -o rhyper.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbinom.c -o dnbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbinom.c -o pnbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom.c -o qnbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom_mu.c -o qnbinom_mu.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnbinom.c -o rnbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dpois.c -o dpois.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ppois.c -o ppois.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qpois.c -o qpois.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rpois.c -o rpois.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dweibull.c -o dweibull.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pweibull.c -o pweibull.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qweibull.c -o qweibull.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rweibull.c -o rweibull.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlogis.c -o dlogis.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plogis.c -o plogis.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlogis.c -o qlogis.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlogis.c -o rlogis.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnchisq.c -o dnchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnchisq.c -o pnchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnchisq.c -o qnchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbeta.c -o dnbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbeta.c -o pnbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbeta.c -o qnbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnf.c -o pnf.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnt.c -o pnt.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnf.c -o qnf.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnt.c -o qnt.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ptukey.c -o ptukey.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qtukey.c -o qtukey.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c toms708.c -o toms708.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c wilcox.c -o wilcox.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c signrank.c -o signrank.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c std_unif.c -o std_unif.o
ar -cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o
ranlib libRmath.a
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/nmath/standalone'
make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/nmath/standalone'
R_GZIPCMD="/bin/gzip -n" \
	/usr/bin/make docs R_CMD_BUILD_HELP_OPTS="--txt --example"
make[1]: Entering directory '/build/reproducible-path/r-base-4.4.3'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/m4'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tools'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc/html'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc/html'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/etc'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/etc'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/share'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/share'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/src'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/scripts'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/scripts'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/scripts'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/scripts'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/include'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/include/R_ext'
make[4]: Nothing to be done for 'R'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/include/R_ext'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/include'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[5]: 'Makedeps' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[5]: 'libtre.a' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/appl'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/appl'
make[4]: 'libappl.a' is up to date.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/appl'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/appl'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/nmath'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/nmath'
make[4]: 'libnmath.a' is up to date.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/nmath'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/nmath'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/unix'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/unix'
make[4]: 'libunix.a' is up to date.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/unix'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/unix'
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2  -Wl,-z,relro -DR_HOME='"/build/reproducible-path/r-base-4.4.3"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/unix'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/unix'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
/build/reproducible-path/r-base-4.4.3/lib/libR.so is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
/build/reproducible-path/r-base-4.4.3/bin/exec/R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/internet'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/internet'
make[5]: 'internet.so' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/internet'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/internet'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/lapack'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/lapack'
make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/lapack'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/lapack'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
/build/reproducible-path/r-base-4.4.3/modules/R_X11.so is unchanged
/build/reproducible-path/r-base-4.4.3/modules/R_de.so is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/profile'
building system startup profile
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/profile'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/translations'
building package 'translations'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/translations'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/translations'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/translations'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
building package 'base'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
building package 'tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
building package 'utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[9]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[10]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
building package 'stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/datasets'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/datasets'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/datasets'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
building package 'methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
building package 'grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
building package 'splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk/src'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk/src'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
you should 'make docs' now ...
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc'
creating doc/NEWS
creating doc/NEWS.pdf
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
creating doc/manual/R-FAQ.html
creating doc/manual/version.texi
creating doc/manual/R-admin.html
creating doc/manual/R-data.html
creating doc/manual/R-exts.html
creating doc/manual/R-intro.html
creating doc/manual/R-ints.html
creating doc/manual/R-lang.html
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc/html'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc/html'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library'
installing parsed Rd
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library'
  base
  stats
  utils
  methods
  graphics
  grDevices
  datasets
  grid
  tools
  tcltk
  splines
  stats4
  compiler
  parallel
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library'
building/updating package metadata ...
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library'
writing package indices
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.3'
/usr/bin/make javaconf
make[1]: Entering directory '/build/reproducible-path/r-base-4.4.3'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/m4'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tools'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc/html'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc/html'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/etc'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/etc'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/share'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/share'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/src'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/scripts'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/scripts'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/scripts'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/scripts'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/include'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/include/R_ext'
make[4]: Nothing to be done for 'R'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/include/R_ext'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/include'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[5]: 'Makedeps' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[5]: 'libtre.a' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/appl'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/appl'
make[4]: 'libappl.a' is up to date.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/appl'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/appl'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/nmath'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/nmath'
make[4]: 'libnmath.a' is up to date.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/nmath'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/nmath'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/unix'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/unix'
make[4]: 'libunix.a' is up to date.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/unix'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/unix'
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2  -Wl,-z,relro -DR_HOME='"/build/reproducible-path/r-base-4.4.3"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/unix'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/unix'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
/build/reproducible-path/r-base-4.4.3/lib/libR.so is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
/build/reproducible-path/r-base-4.4.3/bin/exec/R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/internet'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/internet'
make[5]: 'internet.so' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/internet'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/internet'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/lapack'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/lapack'
make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/lapack'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/lapack'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
/build/reproducible-path/r-base-4.4.3/modules/R_X11.so is unchanged
/build/reproducible-path/r-base-4.4.3/modules/R_de.so is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/profile'
building system startup profile
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/profile'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/translations'
building package 'translations'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/translations'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/translations'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/translations'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
building package 'base'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
building package 'tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
building package 'utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[9]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[10]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
building package 'stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/datasets'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/datasets'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/datasets'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
building package 'methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
building package 'grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
building package 'splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk/src'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk/src'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3'
configuring Java ...
Java interpreter : /usr/lib/jvm/default-java/bin/java
Java version     : 21.0.7-ea
Java home path   : /usr/lib/jvm/default-java
Java compiler    : /usr/lib/jvm/default-java/bin/javac
Java headers gen.: 
Java archive tool: /usr/lib/jvm/default-java/bin/jar

trying to compile and link a JNI program 
detected JNI cpp flags    : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux
detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
using C compiler: 'gcc (Debian 14.2.0-19) 14.2.0'
make[3]: Entering directory '/tmp/Rjavareconf.BVoJDT'
gcc -I"/build/reproducible-path/r-base-4.4.3/include" -DNDEBUG -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux      -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2  -c conftest.c -o conftest.o
gcc -shared -L/build/reproducible-path/r-base-4.4.3/lib -Wl,-z,relro -o conftest.so conftest.o -L/usr/lib/jvm/default-java/lib/server -ljvm -L/build/reproducible-path/r-base-4.4.3/lib -lR
make[3]: Leaving directory '/tmp/Rjavareconf.BVoJDT'


JAVA_HOME        : /usr/lib/jvm/default-java
Java library path: $(JAVA_HOME)/lib/server
JNI cpp flags    : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux
JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
Updating Java configuration in /build/reproducible-path/r-base-4.4.3
Done.

make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3'
make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.3'
touch make-arch-stamp
*** make-indep ***
/usr/bin/make -k docs
make[1]: Entering directory '/build/reproducible-path/r-base-4.4.3'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/m4'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tools'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc/html'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc/html'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/etc'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/etc'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/share'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/share'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/src'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/scripts'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/scripts'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/scripts'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/scripts'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/include'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/include/R_ext'
make[4]: Nothing to be done for 'R'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/include/R_ext'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/include'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[5]: 'Makedeps' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[5]: 'libtre.a' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/appl'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/appl'
make[4]: 'libappl.a' is up to date.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/appl'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/appl'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/nmath'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/nmath'
make[4]: 'libnmath.a' is up to date.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/nmath'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/nmath'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/unix'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/unix'
make[4]: 'libunix.a' is up to date.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/unix'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/unix'
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2  -Wl,-z,relro -DR_HOME='"/build/reproducible-path/r-base-4.4.3"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/unix'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/unix'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
/build/reproducible-path/r-base-4.4.3/lib/libR.so is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
/build/reproducible-path/r-base-4.4.3/bin/exec/R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/internet'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/internet'
make[5]: 'internet.so' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/internet'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/internet'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/lapack'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/lapack'
make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/lapack'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/lapack'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
/build/reproducible-path/r-base-4.4.3/modules/R_X11.so is unchanged
/build/reproducible-path/r-base-4.4.3/modules/R_de.so is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/profile'
building system startup profile
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/profile'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/translations'
building package 'translations'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/translations'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/translations'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/translations'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
building package 'base'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
building package 'tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
building package 'utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[9]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[10]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
building package 'stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/datasets'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/datasets'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/datasets'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
building package 'methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
building package 'grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
building package 'splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk/src'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk/src'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc/html'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc/html'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library'
installing parsed Rd
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library'
  base
  stats
  utils
  methods
  graphics
  grDevices
  datasets
  grid
  tools
  tcltk
  splines
  stats4
  compiler
  parallel
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library'
building/updating package metadata ...
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library'
writing package indices
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.3'
(cd doc/manual && /usr/bin/make html)
make[1]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc/html'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc/html'
make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
/usr/bin/make info
make[1]: Entering directory '/build/reproducible-path/r-base-4.4.3'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-FAQ.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-admin.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-data.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-exts.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-intro.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-ints.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-lang.texi
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc'
make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.3'
(cd doc/manual && \
	/usr/bin/make refman.pdf R-admin.pdf R-data.pdf R-exts.pdf \
		R-FAQ.pdf R-intro.pdf R-ints.pdf R-lang.pdf)
make[1]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
creating doc/manual/version.tex
collecting LaTeX docs for package 'base' ...
Converting parsed Rd's to LaTeX ............................................
collecting LaTeX docs for package 'tools' ...
Converting parsed Rd's to LaTeX ......
collecting LaTeX docs for package 'utils' ...
Converting parsed Rd's to LaTeX ................
collecting LaTeX docs for package 'grDevices' ...
Converting parsed Rd's to LaTeX .......
collecting LaTeX docs for package 'graphics' ...
Converting parsed Rd's to LaTeX .......
collecting LaTeX docs for package 'stats' ...
Converting parsed Rd's to LaTeX ...............................
collecting LaTeX docs for package 'datasets' ...
Converting parsed Rd's to LaTeX ........
collecting LaTeX docs for package 'methods' ...
Converting parsed Rd's to LaTeX ........
collecting LaTeX docs for package 'grid' ...
Converting parsed Rd's to LaTeX ..........
collecting LaTeX docs for package 'splines' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'stats4' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'tcltk' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'compiler' ...
Converting parsed Rd's to LaTeX 
collecting LaTeX docs for package 'parallel' ...
Converting parsed Rd's to LaTeX .
PDF/LaTeX documentation: reference index ...
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./refman.tex
LaTeX2e <2024-11-01> patch level 2
L3 programming layer <2025-01-18>
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2024/06/29 v1.4n Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty)
(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/mathrsfs.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty
`inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex)))))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty
(/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
(/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(/usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
(/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))
(/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
(/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))))
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
Writing index file refman.idx
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
No file refman.aux.
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf-
dist/fonts/enc/dvips/base/8r.enc}]
No file refman.toc.
(./base-pkg.tex
Chapter 1.
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/ursfs.fd)
[1{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc}]
[2]
Underfull \hbox (badness 6252) in paragraph at lines 149--157
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [
]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It

Underfull \hbox (badness 10000) in paragraph at lines 149--157
\T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T
1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base

Underfull \hbox (badness 10000) in paragraph at lines 149--157
[]\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base

Underfull \hbox (badness 10000) in paragraph at lines 149--157
\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z
i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As

Underfull \hbox (badness 4995) in paragraph at lines 149--157
[]\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by []
\T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 ,

[3]
[4]
[5]
Underfull \hbox (badness 1178) in paragraph at lines 337--340
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/
n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues

[6]
[7]
[8]
[9]
Underfull \hbox (badness 2556) in paragraph at lines 572--578
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ',

[10]
[11]
[12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[13{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}]
[14]
[15]
[16]
[17]
[18]
[19]
[20]
[21]
[22]
[23]
[24]
[25]
[26]
[27]
[28]
[29]
[30]
Underfull \vbox (badness 3803) has occurred while \output is active
[31]
[32]
[33]
[34]
[35]
[36]
Overfull \hbox (26.27782pt too wide) in paragraph at lines 2261--2261
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 

[37]
[38]
[39]
[40]
[41]
[42]
[43]
[44]
[45]
[46]
Underfull \hbox (badness 1721) in paragraph at lines 2926--2930
[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p
tm/m/n/10 ; fur-ther,

[47]
[48]
[49]
[50]
[51]
[52]
[53]
Underfull \hbox (badness 2538) in paragraph at lines 3404--3407
[]\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[]
[][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE,

[54]
[55]
[56]
[57]
[58]
[59]
[60]
[61]
[62]
[63]
[64]
[65]
[66]
Underfull \hbox (badness 10000) in paragraph at lines 4200--4202
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting

[67]
[68]
[69]
[70]
[71]
[72]
[73]
[74]
[75]
[76]
[77]
[78]
[79]
[80]
[81]
[82]
[83]
[84]
[85]
[86]
[87]
Underfull \hbox (badness 2521) in paragraph at lines 5551--5553
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by

[88]
[89]
[90]
[91]
[92]
[93]
[94]
[95]
[96]
[97]
[98]
[99]
[100]
[101]
[102]
[103]
[104]
[105]
[106]
[107]
Overfull \hbox (5.27168pt too wide) in paragraph at lines 6834--6834
 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 

[108]
[109]
[110]
[111]
[112]
[113]
[114]
[115]
[116]
[117]
[118]
[119]
Underfull \hbox (badness 1303) in paragraph at lines 7730--7737
[]\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n
/10 only. This reads the

[120]
Underfull \hbox (badness 2261) in paragraph at lines 7741--7746
\T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1
/zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen
et . net / ~conrad / software /

[121]
[122]
Underfull \vbox (badness 10000) has occurred while \output is active
[123]
[124]
[125]
[126]
[127]
[128]
[129]
[130]
[131]
Underfull \hbox (badness 2096) in paragraph at lines 8474--8478
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .

[132]
[133]
Underfull \hbox (badness 2351) in paragraph at lines 8589--8592
[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,

[134]
[135]
[136]
[137]
[138]
Underfull \hbox (badness 4479) in paragraph at lines 8906--8917
[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),

[139]
[140]
[141]
[142]
[143]
[144]
Underfull \hbox (badness 1629) in paragraph at lines 9334--9346
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

Underfull \hbox (badness 2875) in paragraph at lines 9334--9346
[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31

[145]
[146]
[147]
[148]
[149]
[150]
[151]
[152]
[153]
[154]
[155]
[156]
[157]
Underfull \hbox (badness 1178) in paragraph at lines 10200--10204
[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
 atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names 
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-

[158]
[159]
[160]
[161]
[162]
[163]
[164]
[165]
[166]
[167]
[168]
[169]
[170]
[171]
[172]
[173]
[174]
[175]
[176]
[177]
[178]
[179]
[180]
[181]
[182]
[183]
[184]
[185]
[186]
[187]
[188]
[189]
[190]
[191]
[192]
[193]
Underfull \hbox (badness 2744) in paragraph at lines 12540--12542
[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see

[194]
[195]
[196]
[197]
[198]
[199]
[200]
[201]
Underfull \vbox (badness 10000) has occurred while \output is active
[202]
[203]
[204]
[205]
[206]
[207]
[208]
[209]
[210]
[211]
[212]
[213]
[214]
[215]
[216]
[217]
[218]
[219]
[220]
[221]
[222]
[223]
[224]
[225]
[226]
Underfull \hbox (badness 2253) in paragraph at lines 14746--14748
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see

Underfull \hbox (badness 1490) in paragraph at lines 14781--14784
[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the

[227]
Underfull \hbox (badness 1565) in paragraph at lines 14863--14867
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and

[228]
Underfull \hbox (badness 4927) in paragraph at lines 14914--14916
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/zi4/m/n/10 fsep =

[229]
[230]
[231]
Underfull \hbox (badness 1466) in paragraph at lines 15065--15068
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and

[232]
Underfull \hbox (badness 10000) in paragraph at lines 15196--15200
[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 15207--15210
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /

[233]
[234]
[235]
[236]
[237]
Underfull \hbox (badness 3965) in paragraph at lines 15504--15508
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,

[238]
[239]
[240]
[241]
[242]
[243]
[244]
[245]
Underfull \hbox (badness 5260) in paragraph at lines 16006--16006
[]\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/
ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma
ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 ,

[246]
[247]
[248]
[249]
Underfull \hbox (badness 4429) in paragraph at lines 16296--16299
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for

[250]
[251]
Underfull \hbox (badness 10000) in paragraph at lines 16403--16405
[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/zi4/m/n/10 .format.zeros(*,

[252]
Underfull \hbox (badness 2035) in paragraph at lines 16476--16480
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 
R \T1/ptm/m/n/10 3.2.0: for use within

[253]
Underfull \vbox (badness 10000) has occurred while \output is active
[254]
[255]
[256]
[257]
[258]
[259]
[260]
[261]
[262]
Underfull \hbox (badness 2452) in paragraph at lines 17099--17103
[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 17099--17103
\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and

[263]
[264]
[265]
Underfull \hbox (badness 1092) in paragraph at lines 17273--17278
[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing

[266]
[267]
[268]
Underfull \hbox (badness 6741) in paragraph at lines 17526--17530
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,

[269]
[270]
[271]
[272]
[273]
[274]
[275]
[276]
[277]
[278]
[279]
Underfull \vbox (badness 3803) has occurred while \output is active
[280]
Underfull \vbox (badness 10000) has occurred while \output is active
[281]
[282]
[283]
[284]
[285]
[286]
[287]
[288]
[289]
[290]
Underfull \hbox (badness 1769) in paragraph at lines 18999--19002
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor

[291]
[292]
[293]
[294]
[295]
Underfull \hbox (badness 10000) in paragraph at lines 19308--19310
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /

Underfull \hbox (badness 2088) in paragraph at lines 19314--19323
[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /

[296]
[297]
[298]
[299]
[300]
[301]
[302]
[303]
[304]
[305]
Underfull \hbox (badness 1442) in paragraph at lines 19922--19924
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see

[306]
Underfull \hbox (badness 2452) in paragraph at lines 20018--20044
[][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 
as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt
m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 5726) in paragraph at lines 20018--20044
[][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en
vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma
trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][]

[307]
[308]
[309]
[310]
[311]
[312]
Underfull \hbox (badness 1248) in paragraph at lines 20416--20419
[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,

[313]
[314]
[315]
[316]
[317]
Underfull \hbox (badness 4739) in paragraph at lines 20683--20685
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see

[318]
[319]
[320]
[321]
[322]
Underfull \vbox (badness 10000) has occurred while \output is active
[323]
[324]
[325]
[326]
[327]
[328]
[329]
[330]
[331]
[332]
[333]
[334]
[335]
[336]
Underfull \hbox (badness 2469) in paragraph at lines 21851--21856
[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and

[337]
Underfull \hbox (badness 1675) in paragraph at lines 21938--21947
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3189) in paragraph at lines 21948--21961
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
 or empty, the

[338]
Underfull \hbox (badness 10000) in paragraph at lines 21996--21999
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-

Underfull \hbox (badness 4752) in paragraph at lines 21996--21999
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may 
be opened by

[339]
[340]
Underfull \hbox (badness 1014) in paragraph at lines 22130--22135
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if

[341]
[342]
[343]
[344]
[345]
[346]
[347]
[348]
[349]
[350]
[351]
[352]
[353]
Underfull \hbox (badness 1264) in paragraph at lines 22977--22985
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:

Underfull \hbox (badness 4441) in paragraph at lines 23012--23015
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,

[354]
[355]
[356]
[357]
[358]
[359]
[360]
[361]
[362]
[363]
[364]
[365]
[366]
Underfull \hbox (badness 5231) in paragraph at lines 23830--23832
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==

[367]
[368]
[369]
[370]
[371]
[372]
[373]
[374]
[375]
[376]
[377]
[378]
[379]
[380]
[381]
[382]
[383]
Underfull \hbox (badness 6380) in paragraph at lines 24940--24946
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress
ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-

Underfull \hbox (badness 1472) in paragraph at lines 24940--24946
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ 
_ Utils$[][]

[384]
[385]
[386]
[387]
[388]
[389]
[390]
[391]
[392]
Underfull \hbox (badness 2790) in paragraph at lines 25453--25456
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 25453--25456
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by

[393]
[394]
[395]
[396]
[397]
Underfull \hbox (badness 1194) in paragraph at lines 25781--25784
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls

[398]
[399]
[400]
Underfull \hbox (badness 2368) in paragraph at lines 25988--25994
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,

[401]
[402]
[403]
[404]
[405]
[406]
Underfull \hbox (badness 10000) in paragraph at lines 26378--26381
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by

[407]
[408]
[409]
[410]
[411]
[412]
[413]
[414]
[415]
[416]
Underfull \hbox (badness 10000) in paragraph at lines 27006--27008
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%

[417]
[418]
[419]
[420]
[421]
[422]
[423]
Underfull \hbox (badness 2443) in paragraph at lines 27497--27505
\T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob
-jects. For

[424]
[425]
[426]
[427]
[428]
[429]
[430]
Underfull \hbox (badness 1881) in paragraph at lines 27927--27930
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 27952--27954
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see


[431]
[432]
Underfull \hbox (badness 2142) in paragraph at lines 28093--28097
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 28150--28155
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

[433]
[434]
[435]
[436]
Underfull \hbox (badness 10000) in paragraph at lines 28446--28452
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 28446--28452
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 28446--28452
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 5878) in paragraph at lines 28459--28462
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p
tm/m/n/10 and

Underfull \hbox (badness 2689) in paragraph at lines 28485--28487
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 28531--28536
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly

[437]
Underfull \hbox (badness 2529) in paragraph at lines 28537--28548
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 28537--28548
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and

Underfull \hbox (badness 7203) in paragraph at lines 28549--28552
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and

[438]
[439]
[440]
[441]
[442]
Underfull \vbox (badness 10000) has occurred while \output is active
[443]
Underfull \hbox (badness 10000) in paragraph at lines 28967--28971
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],

[444]
[445]
Underfull \hbox (badness 10000) in paragraph at lines 29114--29117
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,

[446]
Underfull \hbox (badness 7925) in paragraph at lines 29195--29199
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to

Underfull \hbox (badness 1253) in paragraph at lines 29195--29199
[][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 ,
 which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) 
and [][][]\T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 2521) in paragraph at lines 29200--29209
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s,

[447]
[448]
[449]
[450]
[451]
[452]
[453]
[454]
[455]
[456]
[457]
[458]
[459]
[460]
[461]
[462]
Underfull \hbox (badness 2726) in paragraph at lines 30214--30217
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see

[463]
[464]
[465]
[466]
[467]
[468]
[469]
[470]
[471]
[472]
[473]
[474]
[475]
[476]
[477]
[478]
[479]
[480]
[481]
Underfull \vbox (badness 3803) has occurred while \output is active
[482]
[483]
[484]
[485]
[486]
[487]
[488]
[489]
[490]
Underfull \hbox (badness 1533) in paragraph at lines 32024--32027
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the

[491]
[492]
[493]
Underfull \hbox (badness 1163) in paragraph at lines 32195--32206
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in

[494]
[495]
[496]
[497]
[498]
[499]
[500]
Underfull \vbox (badness 3803) has occurred while \output is active
[501]
[502]
Underfull \hbox (badness 6300) in paragraph at lines 32741--32743
[]\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr
it-ing R Ex-ten-sions' man-ual:

[503]
[504]
[505]
[506]
[507]
[508]
[509]
[510]
[511]
[512]
[513]
[514]
[515]
[516]
[517]
[518]
[519]
Underfull \hbox (badness 10000) in paragraph at lines 33864--33868
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 33864--33868
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions 
of the matches are also re-turned by name.

Underfull \hbox (badness 3557) in paragraph at lines 33885--33887
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /

Underfull \hbox (badness 1122) in paragraph at lines 33888--33892
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /

[520]
[521]
Underfull \vbox (badness 10000) has occurred while \output is active
[522]
[523]
[524]
[525]
[526]
[527]
[528]
[529]
Underfull \hbox (badness 1655) in paragraph at lines 34490--34492
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for

[530]
[531]
[532]
[533]
[534]
[535]
[536]
[537]
[538]
[539]
[540]
[541]
[542]
[543]
[544]
[545]
[546]
[547]
[548]
Underfull \hbox (badness 2261) in paragraph at lines 35693--35698
[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if

[549]
[550]
[551]
[552]
[553]
[554]
[555]
[556]
[557]
[558]
[559]
[560]
[561]
[562]
[563]
[564]
Underfull \hbox (badness 3668) in paragraph at lines 36728--36732
[]\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in-
te-ger con-nec-tion de-scrip-tors for use with

[565]
Underfull \hbox (badness 10000) in paragraph at lines 36819--36830
\T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par
sing-[]c-[]command-[]line-[]arguments ?

[566]
[567]
[568]
[569]
[570]
[571]
[572]
[573]
[574]
[575]
[576]
[577]
[578]
[579]
[580]
[581]
[582]
[583]
[584]
[585]
[586]
[587]
[588]
[589]
[590]
Underfull \hbox (badness 10000) in paragraph at lines 38451--38453
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for

[591]
[592]
[593]
[594]
[595]
[596]
[597]
Underfull \hbox (badness 2913) in paragraph at lines 38869--38873
\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by

[598]
[599]
[600]
Underfull \hbox (badness 1072) in paragraph at lines 39115--39119
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

[601]
Underfull \hbox (badness 10000) in paragraph at lines 39120--39124
[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 39160--39166
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 39160--39166
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 39160--39166
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3009) in paragraph at lines 39175--39182
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

Underfull \hbox (badness 1038) in paragraph at lines 39175--39182
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 39175--39182
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 39175--39182
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from

[602]
[603]
[604]
[605]
Underfull \hbox (badness 2644) in paragraph at lines 39410--39414
[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an


[606]
[607]
[608]
Underfull \hbox (badness 1389) in paragraph at lines 39573--39580
[]\T1/ptm/m/n/10 a char-ac-ter string. The de-fault for the []\T1/zi4/m/n/10 fo
rmat []\T1/ptm/m/n/10 meth-ods is []\T1/zi4/m/n/10 "%Y-%m-%d

[609]
[610]
[611]
[612]
[613]
[614]
[615]
[616]
[617]
[618]
[619]
[620]
[621]
[622]
[623]
[624]
[625]
[626]
[627]
[628]
[629]
Underfull \hbox (badness 1158) in paragraph at lines 40939--40941
[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault

[630]
[631]
[632]
[633]
[634]
[635] [636]
[637]
[638]
[639]
Underfull \hbox (badness 1137) in paragraph at lines 41539--41545
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails

Underfull \hbox (badness 4967) in paragraph at lines 41557--41562
[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple

[640]
[641]
Underfull \hbox (badness 1616) in paragraph at lines 41677--41682
[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions

[642]
[643]
[644]
[645]
Underfull \vbox (badness 3803) has occurred while \output is active
[646]
[647]
[648]
[649]
[650]
Underfull \hbox (badness 1472) in paragraph at lines 42224--42227
[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see

[651]
[652]
[653]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 42436.


[654]
[655]
[656]
[657]
[658]
[659]
[660]
[661]
[662]
[663]
[664]
[665]
Underfull \hbox (badness 10000) in paragraph at lines 43175--43179
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca
n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4
/m/sl/10 length(bin) >

[666]
[667]
[668]
[669]
[670]
Underfull \hbox (badness 10000) in paragraph at lines 43534--43537
[][][]\T1/zi4/m/sl/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] 
[][]$https : / / developer . r-[]project . org /

[671]
[672]
[673]
Underfull \hbox (badness 10000) in paragraph at lines 43718--43722
[][][]\T1/zi4/m/sl/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s
l/10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 taskCallb
ackManager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/sl/10 https : / / developer .


[674]
[675]
[676]
[677]
[678]
[679]
[680]
[681]
[682]
[683]
Underfull \hbox (badness 10000) in paragraph at lines 44366--44369
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[]
[] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time
-[]zones /

[684]
[685]
[686]
[687]
[688]
[689]
Underfull \vbox (badness 10000) has occurred while \output is active
[690]
[691]
[692]
[693]
[694]
[695]
[696]
[697]
Underfull \hbox (badness 1990) in paragraph at lines 45282--45290
[]\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an
y er-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 45282--45290
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less

[698]
[699]
[700]
[701]
[702]
[703]
[704]
[705]
[706]
[707]
[708]
[709]
[710]
[711]
[712]
[713]
[714]
[715]
[716]
[717]
[718]
[719]
Underfull \hbox (badness 1014) in paragraph at lines 46719--46722
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me
-di-ately, even if

[720]
[721]
Underfull \hbox (badness 2401) in paragraph at lines 46852--46856
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][]("
warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a

[722]
[723]
Underfull \hbox (badness 3492) in paragraph at lines 46978--46980
[]\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/
ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e.,

[724]
[725]
Underfull \hbox (badness 2111) in paragraph at lines 47064--47069
\T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10
 is not empty, these are used as col-umn names.

[726]
[727]
[728]
Underfull \hbox (badness 4001) in paragraph at lines 47312--47314
[]\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard 
eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/sl/10 https : / / developer 
.

[729]
[730]
[731]
[732]
[733]
[734]
[735]
Underfull \hbox (badness 5417) in paragraph at lines 47713--47717
[]\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re
ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas

[736]
Underfull \hbox (badness 10000) in paragraph at lines 47774--47778
[]\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d
ard' reg-exps, in-clud-ing el-e-ments named

[737]) (./compiler-pkg.tex
[738]
Chapter 2.

[739]
[740]
[741]
[742]) (./datasets-pkg.tex
Chapter 3.

[743]
[744]
[745]
[746]
[747] [748]
[749]
[750]
[751]
[752]
[753]
[754]
[755]
[756]
[757]
[758]
[759]
Underfull \hbox (badness 1097) in paragraph at lines 1034--1038
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.

[760]
[761]
[762]
[763]
[764]
[765]
[766]
[767]
[768]
[769]
[770]
[771] [772]
[773]
[774]
[775]
[776]
[777] [778]
[779]
[780]
[781]
[782] [783]
[784]
[785]
[786]
[787]
[788]
[789]
[790]
[791]
[792]
[793]
[794]
[795]
[796]
[797]
[798]
[799]
[800]
[801]
Overfull \hbox (2.27475pt too wide) in paragraph at lines 3524--3524
 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis
t.html#Geographic%20Centers[] 

[802]
[803]
[804]
[805]
[806]
[807]
[808]
[809]
[810]
[811]
[812]
[813]
[814]
[815]
[816]
[817]
[818]
[819]
[820]
[821]
[822]
[823]
[824]
[825]) (./grDevices-pkg.tex
[826]
Chapter 4.

[827]
[828]
[829]
[830]
[831]
Underfull \hbox (badness 2221) in paragraph at lines 282--286
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[]
\T1/ptm/m/n/10 , with iden-ti-cal mean-ing to

Underfull \hbox (badness 10000) in paragraph at lines 297--302
[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/sl/10 axisTicks[][][]() []\T1
/ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1
/ptm/m/n/10 in

[832]
[833]
[834]
[835]
[836]
[837]
[838]
[839]
[840]
Underfull \hbox (badness 1424) in paragraph at lines 901--903
[][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a
nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b
e spec-i-fied as

[841]
[842]
[843]
[844]
[845]
[846]
Underfull \hbox (badness 5175) in paragraph at lines 1229--1231
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in

[847]
[848]
Underfull \hbox (badness 2512) in paragraph at lines 1348--1350
[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar
chive . org / web / 20190613001950 / http : / / efg2 . com /

[849]
[850]
[851]
[852]
[853]
Underfull \hbox (badness 1490) in paragraph at lines 1648--1653
\T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and 
[][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []
\T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10
 and

Underfull \hbox (badness 3302) in paragraph at lines 1661--1665
[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of

[854]
[855]
[856]
[857]
[858]
[859]
Underfull \hbox (badness 1325) in paragraph at lines 2076--2086
[]\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png
alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/
m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm
/m/n/10 ,

[860]
[861]
Underfull \hbox (badness 10000) in paragraph at lines 2188--2190
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of

[862]
[863]
[864]
Underfull \hbox (badness 6758) in paragraph at lines 2376--2379
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are

[865]
[866]
[867]
[868]
[869]
[870]
[871]
[872]
[873]
[874]
[875]
[876]
Underfull \hbox (badness 10000) in paragraph at lines 3132--3133


[877]
[878]
[879]
[880]
[881]
[882]
[883]
[884]
[885]
[886]
[887]
[888]
Underfull \vbox (badness 3803) has occurred while \output is active
[889]
[890]
[891]
[892]
Underfull \vbox (badness 10000) has occurred while \output is active
[893]
[894]
[895]
[896]
Underfull \hbox (badness 1418) in paragraph at lines 4410--4417
\T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H
elvetica-Narrow"[]\T1/ptm/m/n/10 ,

[897]
[898]
[899]
[900]
[901]
[902]
[903]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.4875 \aliasA{symbol}{plotmath}{symbol}
                                         [904] [905]
[906]
[907]
Underfull \vbox (badness 3803) has occurred while \output is active
[908]
[909]
Underfull \hbox (badness 1584) in paragraph at lines 5268--5270
[]\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1
/zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See

Underfull \hbox (badness 1067) in paragraph at lines 5272--5279
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-

[910]
[911]
[912]
[913]
Underfull \hbox (badness 1377) in paragraph at lines 5574--5579
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues

[914]
[915]
Underfull \hbox (badness 1377) in paragraph at lines 5678--5683
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and

[916]
Underfull \hbox (badness 7344) in paragraph at lines 5747--5749
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso

[917]
[918]
Underfull \hbox (badness 2035) in paragraph at lines 5886--5895
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 5886--5895
\T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti
ca-Narrow"[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 5886--5895
[]\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P
alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1
/zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/
ptm/m/n/10 ,

[919]
Underfull \hbox (badness 10000) in paragraph at lines 5953--5958
[]\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/
zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu /

[920]
[921]
[922]
Underfull \hbox (badness 1546) in paragraph at lines 6093--6101
[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n
/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 ,

[923]
[924]
[925]
[926]
[927]
[928]
Underfull \hbox (badness 6625) in paragraph at lines 6537--6540
[]\T1/ptm/m/n/10 Murrell, P., Ooms, J., Al-laire, J.J. (2015), "Record-ing and 
Re-play-ing the Graph-

[929]
[930]
Underfull \hbox (badness 10000) in paragraph at lines 6641--6644
[]\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (
red/green/blue) into HSV space

[931]
[932]
[933]
[934]
Overfull \hbox (9.73488pt too wide) in paragraph at lines 6878--6878
 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro
blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/
zi4/m/n/9 ):[] 

[935]
[936]
[937]
[938]
[939]
[940]
[941]
[942]
[943]
[944]
Underfull \hbox (badness 1189) in paragraph at lines 7507--7509
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of

[945]
Underfull \hbox (badness 10000) in paragraph at lines 7612--7614
[]\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C
JK lan-guages and

[946]
[947]
[948]
[949]
[950]
Underfull \hbox (badness 3780) in paragraph at lines 7927--7933
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/s
l/10 "AvantGarde"[]\T1/ptm/m/n/10 ,

[951]
[952]
[953]
[954]
[955]
[956]) (./graphics-pkg.tex
Chapter 5.

[957]
[958]
[959]
[960]
[961]
[962]
[963]
[964]
[965]
[966]
[967]
Underfull \vbox (badness 3803) has occurred while \output is active
[968]
[969]
[970]
[971]
[972]
[973]
Overfull \hbox (12.71341pt too wide) in paragraph at lines 1037--1037
 []        \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 

[974]
[975]
[976]
[977]
[978]
[979]
Underfull \hbox (badness 4634) in paragraph at lines 1410--1413
[][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor
ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1
/ptm/m/n/10 ,

[980]
[981]
[982]
[983]
[984]
[985]
[986]
[987]
[988]
[989]
[990]
[991]
[992]
[993]
[994]
[995]
[996]
Underfull \hbox (badness 1728) in paragraph at lines 2388--2390
[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10
 "n" []\T1/ptm/m/n/10 to sup-press and see also

[997]
Underfull \hbox (badness 1009) in paragraph at lines 2481--2488
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to

[998]
[999]
[1000]
[1001]
[1002]
[1003]
[1004]
[1005]
[1006]
[1007]
[1008]
[1009]
[1010]
[1011]
[1012]
[1013]
[1014]
[1015]
[1016]
[1017]
[1018]
[1019]
[1020]
Underfull \vbox (badness 10000) has occurred while \output is active
[1021]
Underfull \vbox (badness 10000) has occurred while \output is active
[1022]
[1023]
[1024]
[1025]
[1026]
[1027]
Underfull \vbox (badness 3803) has occurred while \output is active
[1028]
[1029]
[1030]
[1031]
[1032]
[1033]
[1034]
Underfull \hbox (badness 3229) in paragraph at lines 4733--4738
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see

[1035]
[1036]
[1037]
[1038]
[1039]
Underfull \hbox (badness 1107) in paragraph at lines 5233--5239
[]\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc
aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c
h),

[1040]
[1041]
Underfull \hbox (badness 10000) in paragraph at lines 5362--5365


[1042 </build/reproducible-path/r-base-4.4.3/library/graphics/help/figures/mai.
pdf>]
Underfull \hbox (badness 10000) in paragraph at lines 5423--5425


[1043 </build/reproducible-path/r-base-4.4.3/library/graphics/help/figures/oma.
pdf>]
[1044]
[1045]
[1046]
[1047]
[1048]
[1049]
[1050]
[1051]
[1052]
[1053]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6097 \aliasA{plot}{plot.default}{plot}
                                        
[1054]
[1055]
[1056]
[1057]
[1058]
[1059]
[1060]
[1061]
[1062]
[1063]
[1064]
[1065]
[1066]
[1067]
Overfull \hbox (31.57222pt too wide) in paragraph at lines 6997--6998
[][] 

[1068 </build/reproducible-path/r-base-4.4.3/library/graphics/help/figures/pch.
pdf>]
[1069]
Underfull \vbox (badness 3803) has occurred while \output is active
[1070]
[1071]
[1072]
[1073]
[1074]
[1075]
[1076]
[1077]
[1078]
[1079]
[1080]
[1081]
[1082]
[1083]
[1084]
[1085]
[1086]
[1087]
[1088]
[1089]
[1090]
[1091]
[1092]
[1093]
[1094]
[1095]
[1096]
[1097]
[1098]
[1099]
[1100]
[1101]
[1102]
Underfull \hbox (badness 4954) in paragraph at lines 9109--9111
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/sl/10 par(c("font.sub",

Underfull \hbox (badness 1019) in paragraph at lines 9111--9113
[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa
r(c("font.lab", "cex.lab",

[1103]
[1104]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9191 \HeaderA{units}{Graphical Units}{units}
                                              
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9191 \HeaderA{units}{Graphical Units}{units}
                                              
[1105]
[1106]
[1107]
[1108]) (./grid-pkg.tex
Chapter 6.

[1109]
[1110]
[1111]
[1112]
[1113]
[1114]
[1115]
[1116]
[1117]
Underfull \hbox (badness 2680) in paragraph at lines 551--554
[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an
d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal
-cu-la-tion of

[1118]
[1119]
[1120]
[1121]
[1122] [1123]
[1124]
[1125]
[1126]
[1127]
[1128]
Underfull \hbox (badness 4279) in paragraph at lines 1188--1197
[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/
ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T
1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi
ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 ,

[1129]
[1130]
[1131]
[1132]
[1133]
[1134]
[1135]
[1136]
[1137]
[1138]
[1139]
[1140]
[1141]
[1142]
[1143]
[1144]
[1145]
[1146]
[1147]
[1148]
[1149]
[1150]
[1151]
[1152]
[1153]
[1154]
[1155]
[1156]
[1157]
[1158]
[1159]
[1160]
Underfull \hbox (badness 10000) in paragraph at lines 3103--3105
[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see

[1161]
[1162]
[1163]
[1164]
[1165]
[1166]
[1167]
[1168]
[1169]
[1170]
[1171]
[1172]
[1173]
[1174]
[1175]
[1176]
Underfull \vbox (badness 10000) has occurred while \output is active
[1177]
[1178]
[1179]
[1180]
[1181]
[1182]
[1183]
[1184]
[1185]
[1186]
[1187]
[1188]
[1189]
[1190]
Underfull \hbox (badness 1067) in paragraph at lines 4842--4845
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only

[1191]
[1192]
[1193]
[1194]
[1195]
[1196]
Underfull \hbox (badness 7256) in paragraph at lines 5193--5195
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by

[1197]
[1198]
[1199]
[1200]
[1201]
[1202]
[1203]
Underfull \hbox (badness 2142) in paragraph at lines 5647--5651
[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/
10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or

[1204]
[1205]
Underfull \hbox (badness 4699) in paragraph at lines 5729--5734
[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o
b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 
and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a

[1206]
[1207]
[1208]
[1209]
[1210]
[1211]
[1212]
[1213]
[1214]
[1215]
[1216]
[1217]
[1218]
[1219]
[1220]
[1221]
[1222]
[1223]
[1224]
[1225]
[1226]
[1227]
[1228]
[1229]
[1230]
[1231]
[1232]
[1233]
[1234]
[1235]
[1236]
[1237]) (./methods-pkg.tex
[1238]
Chapter 7.

[1239]
[1240]
[1241]
[1242]
[1243]
[1244]
[1245]
[1246]
Underfull \vbox (badness 10000) has occurred while \output is active
[1247]
Underfull \vbox (badness 10000) has occurred while \output is active
[1248]
[1249]
[1250]
[1251]
[1252]
[1253]
[1254]
[1255]
[1256]
[1257]
Underfull \hbox (badness 2237) in paragraph at lines 1384--1386
[]\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te
nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s
l/10 "package"[]\T1/ptm/m/n/10 , also of class

[1258]
[1259]
[1260]
[1261]
[1262]
[1263]
[1264]
[1265]
[1266]
Underfull \hbox (badness 10000) in paragraph at lines 1980--1985
[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n
/10 can be an ob-ject of class

Underfull \hbox (badness 1038) in paragraph at lines 1980--1985
\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/
m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the

[1267]
[1268]
[1269]
Underfull \hbox (badness 2213) in paragraph at lines 2212--2217
[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/sl/10 where =

[1270]
[1271]
[1272]
[1273]
[1274]
Underfull \hbox (badness 10000) in paragraph at lines 2572--2575
[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] []
\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10
 cre-ate ob-jects of class

[1275]
[1276]
Underfull \hbox (badness 1132) in paragraph at lines 2712--2716
[]\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi
4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10
 slot of the re-turned re-sult is in

[1277]
Underfull \hbox (badness 1033) in paragraph at lines 2748--2753
\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 
re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1
0 re-stores the

[1278]
[1279]
[1280]
[1281]
[1282]
[1283]
[1284]
Underfull \hbox (badness 1102) in paragraph at lines 3305--3307
[]\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string
 name of the pack-age (with-out the ex-tra-ne-ous

[1285]
[1286]
[1287]
[1288]
[1289]
Underfull \hbox (badness 10000) in paragraph at lines 3642--3651
[]\T1/ptm/m/n/10 The

[1290]
[1291]
Underfull \hbox (badness 10000) in paragraph at lines 3762--3763
[] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi
tude = "numeric",

[1292]
Underfull \hbox (badness 10000) in paragraph at lines 3846--3847
[]\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character"
), contains =

[1293]
[1294]
[1295]
[1296]
[1297]
[1298]
[1299]
[1300]
[1301]
[1302]
Underfull \hbox (badness 1769) in paragraph at lines 4477--4483
[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10
 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar


Underfull \hbox (badness 1939) in paragraph at lines 4477--4483
[]\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [
][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u
sed by

[1303]
[1304]
[1305]
[1306]
[1307]
[1308]
[1309]
[1310]
[1311]
[1312]
Underfull \vbox (badness 10000) has occurred while \output is active
[1313]
[1314]
[1315]
Underfull \hbox (badness 4036) in paragraph at lines 5442--5445
[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m
/n/10 the method to use in re-sponse to a

[1316]
[1317]
Underfull \hbox (badness 3803) in paragraph at lines 5517--5519
[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to

[1318]
[1319]
[1320]
Underfull \hbox (badness 1087) in paragraph at lines 5748--5753
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing

[1321]
[1322]
[1323]
[1324]
[1325]
[1326]
[1327]
[1328]
[1329]
Underfull \hbox (badness 1675) in paragraph at lines 6455--6461
[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe
fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class

[1330]
[1331]
[1332]
[1333]
Underfull \vbox (badness 10000) has occurred while \output is active
[1334]
[1335]
[1336]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has 
been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6976 \aliasA{S4}{S3Part}{S4}
                              
[1337]
[1338]
[1339]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7232 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7234 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7235 \aliasA{Math}{S4groupGeneric}{Math}
                                          
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7237 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7238 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                
[1340]
Underfull \hbox (badness 2050) in paragraph at lines 7299--7303
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing

[1341]
[1342]
[1343]
Underfull \hbox (badness 1286) in paragraph at lines 7487--7489
[]\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o
nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions,
 typ-i-cally

[1344]
[1345]
[1346]
[1347]
[1348]
[1349]
[1350]
[1351]
[1352]
[1353]
[1354]
[1355]
[1356]
[1357]
[1358]
[1359]
[1360]
[1361]
[1362]
[1363]
[1364]
[1365]
[1366]
[1367]
[1368]
[1369]
[1370]
Underfull \vbox (badness 10000) has occurred while \output is active
[1371]
[1372]
[1373]
[1374]
[1375]
[1376]
[1377]
[1378]
[1379]
[1380]
[1381]
[1382]
[1383]
[1384]
Underfull \hbox (badness 1158) in paragraph at lines 10494--10497
[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/zi4/m/sl/10 https : / / johnmchambers . su . domains /

[1385]
Underfull \hbox (badness 1852) in paragraph at lines 10572--10576
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,

[1386]
[1387]
[1388]
[1389]) (./parallel-pkg.tex
[1390]
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' []
[]RNG[][][]: see

[1391]
[1392]
[1393]
[1394]
[1395]
Underfull \hbox (badness 1320) in paragraph at lines 300--303
[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.

[1396]
[1397]
[1398]
[1399]
[1400]
[1401]
[1402]
[1403]
[1404]
[1405]
[1406]
[1407]
[1408]
[1409]
[1410]
[1411]
[1412]
Underfull \hbox (badness 3386) in paragraph at lines 1400--1403
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10
 .Random.seed []\T1/ptm/m/n/10 when the

[1413]
[1414]) (./splines-pkg.tex
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 <bates@stat.wisc.edu> \T1/ptm
/m/n/10 and William N. Ven-ables

[1415]
[1416]
[1417]
[1418]
[1419]
[1420]
[1421]
[1422]
[1423]
[1424]
[1425]
[1426]
[1427]
[1428]
[1429]
[1430]) (./stats-pkg.tex
Chapter 10.

[1431]
[1432]
[1433]
[1434]
[1435]
[1436]
[1437]
[1438]
[1439]
[1440]
[1441]
[1442]
[1443]
[1444]
Underfull \hbox (badness 1412) in paragraph at lines 901--903
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 
lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo
r

[1445]
[1446]
[1447]
[1448]
[1449]
[1450]
[1451]
[1452]
Underfull \hbox (badness 2503) in paragraph at lines 1389--1392
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1453]
[1454]
[1455]
[1456]
[1457]
[1458]
[1459]
[1460]
[1461]
[1462]
[1463]
[1464]
[1465]
[1466]
[1467]
[1468]
[1469]
[1470]
[1471]
[1472]
[1473]
[1474]
[1475]
[1476]
[1477]
[1478]
[1479]
[1480]
[1481]
[1482]
[1483]
[1484]
[1485]
[1486]
Underfull \hbox (badness 2503) in paragraph at lines 3561--3564
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1487]
[1488]

Package amsmath Warning: Foreign command \atopwithdelims;
(amsmath)                \frac or \genfrac should be used instead
(amsmath)                 on input line 3674.


[1489]
[1490]
[1491]
[1492]
[1493]
[1494]
[1495]
[1496]
[1497]
[1498]
[1499]
[1500]
[1501]
[1502]
[1503]
[1504]
[1505]
[1506]
Underfull \hbox (badness 3989) in paragraph at lines 4820--4827
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =

[1507]
[1508]
[1509]
[1510]
[1511]
[1512]
[1513]
[1514]
[1515]
[1516]
Underfull \hbox (badness 2556) in paragraph at lines 5474--5477
[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[
]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 
"filter"[]\T1/ptm/m/n/10 . For

[1517]
[1518]
[1519]
[1520]
[1521]
[1522]
[1523]
Underfull \hbox (badness 2503) in paragraph at lines 5886--5890
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1524]
[1525]
[1526]
[1527]
[1528]
[1529]
[1530]
[1531]
[1532]
[1533]
[1534]
[1535]
[1536]
Underfull \hbox (badness 7081) in paragraph at lines 6678--6681
[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c
an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in
g method

Underfull \hbox (badness 10000) in paragraph at lines 6682--6684
[]\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-
gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also

[1537]
[1538]
[1539]
[1540]
[1541]
[1542]
Underfull \vbox (badness 10000) has occurred while \output is active
[1543]
[1544]
[1545]
Underfull \vbox (badness 10000) has occurred while \output is active
[1546]
[1547]
[1548]
[1549]
[1550]
Underfull \hbox (badness 10000) in paragraph at lines 7578--7581
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/zi4/m/sl/10 dist[][][]()[]\T1/ptm/m/n/10 , the

[1551]
[1552]
[1553]
[1554]
[1555]
[1556]
Underfull \vbox (badness 3803) has occurred while \output is active
[1557]
[1558]
[1559]
[1560]
[1561]
[1562]
[1563]
[1564]
[1565]
[1566]
[1567]
[1568]
[1569]
[1570]
[1571]
[1572]
Underfull \vbox (badness 3803) has occurred while \output is active
[1573]
[1574]
[1575]
[1576]
[1577]
[1578]
Underfull \hbox (badness 2626) in paragraph at lines 9275--9278
[]\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\
T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If

[1579]
Underfull \hbox (badness 2503) in paragraph at lines 9382--9386
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1580]
[1581]
[1582]
[1583]
[1584]
[1585]
[1586]
[1587]
[1588]
[1589]
[1590]
[1591]
[1592]
[1593]
[1594]
[1595]
[1596]
[1597]
[1598]
[1599]
[1600]
Underfull \hbox (badness 4518) in paragraph at lines 10730--10735
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1601]
[1602]
[1603]
[1604]
[1605]
Underfull \hbox (badness 2142) in paragraph at lines 11092--11095
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

Underfull \hbox (badness 1253) in paragraph at lines 11111--11114
[]\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t
o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac
h IWLS it-er-a-tion. Hence,

[1606]
Underfull \hbox (badness 1708) in paragraph at lines 11173--11177
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:

[1607]
[1608]
[1609]
[1610]
[1611]
[1612]
Underfull \hbox (badness 1694) in paragraph at lines 11569--11572
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

[1613]
[1614]
[1615]
[1616]
[1617]
[1618]
[1619]
[1620]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.12050 \aliasA{hat}{influence.measures}{hat}
                                             
[1621]
[1622]
Underfull \hbox (badness 1484) in paragraph at lines 12195--12197
[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists
 mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing

[1623]
[1624]
[1625]
[1626]
[1627]
[1628]
[1629]
[1630]
[1631]
[1632]
Underfull \hbox (badness 10000) in paragraph at lines 12782--12784
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d
efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit =

[1633]
[1634]
[1635]
[1636]
[1637]
Underfull \hbox (badness 2894) in paragraph at lines 13124--13128
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method

[1638]
[1639]
[1640]
[1641]
[1642]
[1643]
[1644]
Underfull \hbox (badness 1496) in paragraph at lines 13552--13558
[]\T1/ptm/m/n/10 Gunar Schr�er and Di-et-rich Tren-kler (1995). Ex-act and Ran-
dom-iza-tion Dis-tri-bu-tions of

[1645]
[1646]
[1647]
[1648]
[1649]
[1650]
Underfull \hbox (badness 4518) in paragraph at lines 13955--13960
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1651]
[1652]
[1653]
[1654]
[1655]
[1656]
[1657]
[1658]
[1659]
[1660]
Underfull \hbox (badness 4518) in paragraph at lines 14617--14622
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1661]
[1662]
[1663]
Underfull \hbox (badness 6412) in paragraph at lines 14757--14761
[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int
erpolate", statistics =

Underfull \hbox (badness 1199) in paragraph at lines 14764--14766
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is

[1664]
[1665]
[1666]
[1667]
[1668]
[1669]
[1670]
[1671]
[1672]
[1673]
[1674]
[1675]
[1676]
[1677]
[1678]
[1679]
[1680]
[1681]
Underfull \hbox (badness 2503) in paragraph at lines 15841--15845
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1682]
[1683]
[1684]
[1685]
[1686]
[1687]
[1688]
[1689]
Underfull \hbox (badness 10000) in paragraph at lines 16354--16360
[]\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to

Underfull \hbox (badness 1867) in paragraph at lines 16354--16360
[]\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model.
response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\
T1/ptm/m/n/10 sums any terms

[1690]
[1691]
[1692]
[1693]
[1694]
[1695]
[1696]
[1697]
[1698]
[1699]
[1700]
[1701]
[1702]
[1703]
[1704]
[1705]
[1706]
[1707]
[1708]
[1709]
[1710]
[1711]
[1712]
[1713]
[1714]
[1715]
[1716]
Underfull \hbox (badness 1158) in paragraph at lines 18012--18015
[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T
1/ptm/m/n/10 as the data ar-gu-ment. The ac-

[1717]
[1718]
Underfull \vbox (badness 10000) has occurred while \output is active
[1719]
Underfull \vbox (badness 10000) has occurred while \output is active
[1720]
[1721]
[1722]
[1723]
[1724]
[1725]
[1726]
[1727]
[1728]
[1729]
[1730]
[1731]
[1732]
[1733]
Underfull \hbox (badness 1377) in paragraph at lines 19055--19060
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 19060--19063
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 2343) in paragraph at lines 19073--19077
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 3471) in paragraph at lines 19073--19077
\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) +
 reltol) []\T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 19081--19085
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if

[1734]
[1735]
[1736]
Underfull \vbox (badness 10000) has occurred while \output is active
[1737]
Overfull \hbox (15.73795pt too wide) in paragraph at lines 19306--19306
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

Overfull \hbox (3.75941pt too wide) in paragraph at lines 19309--19309
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 

[1738]
[1739]
[1740]
[1741]
[1742]
[1743]
[1744]
Underfull \hbox (badness 1337) in paragraph at lines 19771--19774
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1745]
[1746]
[1747]
[1748]
[1749]
[1750]
[1751]
[1752]
[1753]
Underfull \hbox (badness 10000) in paragraph at lines 20240--20246
\T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty
 = cook.lty, col = cook.col, text.col

[1754]
[1755]
[1756]
[1757]
[1758]
[1759]
[1760]
Underfull \hbox (badness 1194) in paragraph at lines 20667--20670
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence

[1761]
[1762]
[1763]
[1764]
[1765]
[1766]
Underfull \hbox (badness 2503) in paragraph at lines 21045--21048
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3919) in paragraph at lines 21072--21074
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" 
[]\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson

[1767]
[1768]
[1769]
[1770]
[1771]
[1772]
[1773]
[1774]
[1775]
[1776]
[1777]
[1778]
[1779]
[1780]
[1781]
[1782]
[1783]
[1784]
Underfull \hbox (badness 10000) in paragraph at lines 22150--22156
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,

[1785]
[1786]
[1787]
[1788]
[1789]
[1790]
[1791]
[1792]
[1793]
[1794]
[1795]
[1796]
[1797]
[1798]
[1799]
[1800]
[1801]
[1802]
[1803]
[1804]
[1805]
[1806]
[1807]
[1808]
[1809]
Underfull \hbox (badness 1337) in paragraph at lines 23626--23632
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1810]
[1811]
[1812]
[1813]
[1814]
[1815]
[1816]
[1817]
Underfull \hbox (badness 1436) in paragraph at lines 24116--24119
\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2,

[1818]
Underfull \hbox (badness 10000) in paragraph at lines 24254--24255
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o
rg / wiki / Quantile # Estimating _ quantiles _ from _ a _

[1819]
[1820]
[1821]
[1822]
[1823]
[1824]
[1825]
[1826]
[1827]
[1828]
[1829]
[1830]
[1831]
[1832]
[1833]
[1834]
Underfull \hbox (badness 1824) in paragraph at lines 25224--25230
[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are 
first re-placed by al-ter-

Underfull \hbox (badness 1033) in paragraph at lines 25224--25230
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where

[1835]
Underfull \hbox (badness 10000) in paragraph at lines 25245--25248
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = 
runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] =

[1836]
[1837]
[1838]
[1839]
[1840]
[1841]
[1842]
[1843]
[1844]
Underfull \hbox (badness 2165) in paragraph at lines 25820--25825
[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T
1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,

[1845]
[1846]
[1847]
[1848]
Underfull \hbox (badness 1867) in paragraph at lines 26030--26032
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

Underfull \hbox (badness 10000) in paragraph at lines 26046--26050
[]\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb
ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <-

[1849]
[1850]
[1851]
[1852]
[1853]
[1854]
[1855]
[1856]
[1857]
[1858]
[1859]
[1860]
[1861]
[1862]
[1863]
[1864]
[1865]
[1866]
[1867]
[1868]
[1869]
[1870]
[1871]
[1872]
[1873]
Underfull \vbox (badness 10000) has occurred while \output is active
[1874]
[1875]
Underfull \hbox (badness 3514) in paragraph at lines 27698--27703
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1876]
[1877]
[1878]
[1879]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 27932--27932
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 

Underfull \hbox (badness 3514) in paragraph at lines 27968--27974
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1880]
Overfull \hbox (14.22568pt too wide) in paragraph at lines 28028--28028
 []            \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=
1e-11, nDcentral=TRUE), trace=TRUE)[] 

[1881]
[1882]
[1883]
[1884]
Underfull \hbox (badness 3514) in paragraph at lines 28201--28206
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1885]
Underfull \hbox (badness 3514) in paragraph at lines 28288--28293
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1886]
Underfull \hbox (badness 3514) in paragraph at lines 28353--28358
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1887]
[1888]
Underfull \hbox (badness 3514) in paragraph at lines 28447--28452
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1889]
[1890]
Underfull \hbox (badness 6691) in paragraph at lines 28539--28544
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[]
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1891]
[1892]
[1893]
[1894]
[1895]
[1896]
[1897]
[1898]
Underfull \hbox (badness 4024) in paragraph at lines 29026--29029
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which

[1899]
[1900]
[1901]
[1902]
[1903]
[1904]
[1905]
[1906]
[1907]
[1908]
Underfull \hbox (badness 5431) in paragraph at lines 29629--29631
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if

[1909]
[1910]
[1911]
Underfull \hbox (badness 5431) in paragraph at lines 29839--29842
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if

[1912]
[1913]
[1914]
[1915]
[1916]
[1917]
Underfull \hbox (badness 1337) in paragraph at lines 30154--30158
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1918]
[1919]
Underfull \hbox (badness 1127) in paragraph at lines 30291--30294
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate
 only for

[1920]
[1921]
[1922]
Underfull \hbox (badness 1616) in paragraph at lines 30497--30500
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when

[1923]
[1924]
[1925]
[1926]
[1927]
[1928]
[1929]
[1930]
[1931]
[1932]
[1933]
[1934]
[1935]
[1936]
[1937]
[1938]
[1939]
[1940]
[1941]
[1942]
[1943]
Underfull \hbox (badness 3557) in paragraph at lines 31724--31728
[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non-
[]\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re
ct []\T1/zi4/m/sl/10 interval =

[1944]
[1945]
[1946]
Underfull \vbox (badness 10000) has occurred while \output is active
[1947]
[1948]
[1949]
Underfull \hbox (badness 1337) in paragraph at lines 32091--32095
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1950]
[1951]
[1952]
[1953]
[1954]
[1955]
[1956]
[1957]
[1958]
Underfull \hbox (badness 1337) in paragraph at lines 32619--32623
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1959]
[1960]
[1961]
Overfull \hbox (0.71648pt too wide) in paragraph at lines 32827--32827
 []\T1/zi4/m/n/9 wilcox.test( 4:2,      3:1,     paired=TRUE) # Warning:  canno
t compute exact p-value with ties[] 

[1962]
[1963]
[1964]
Overfull \hbox (19.71954pt too wide) in paragraph at lines 32988--32988
 []      \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep
s = getOption("ts.eps"), ...)[] 

[1965]
[1966]
[1967]
[1968]
[1969]) (./stats4-pkg.tex
[1970]
Chapter 11.

[1971]
[1972]
[1973]
Underfull \vbox (badness 10000) has occurred while \output is active
[1974]
Underfull \vbox (badness 10000) has occurred while \output is active
[1975]
[1976]
[1977]
[1978]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas
h.methods}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                  
[1979]
[1980]
[1981]) (./tcltk-pkg.tex
[1982]
Chapter 12.

[1983]
[1984]
[1985]
[1986]
[1987]
[1988]
[1989]
Underfull \vbox (badness 10000) has occurred while \output is active
[1990]
Underfull \vbox (badness 10000) has occurred while \output is active
[1991]
Underfull \hbox (badness 1546) in paragraph at lines 672--679
[]\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-
ing any Tk or Tcl com-mand by sim-ply run-ning

[1992]
[1993]
[1994]
[1995]
[1996]
Underfull \vbox (badness 10000) has occurred while \output is active
[1997]
[1998]
[1999]
[2000]
[2001]
[2002]
[2003]
[2004]) (./tools-pkg.tex
Chapter 13.

[2005]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.


[2006]
Underfull \hbox (badness 3039) in paragraph at lines 167--170
[]\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil
l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas

[2007]
[2008]
Underfull \hbox (badness 1308) in paragraph at lines 288--301
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

Underfull \hbox (badness 4967) in paragraph at lines 288--301
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b
ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 288--301
[]\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format
InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 
, []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 288--301
[]\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi
s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and

[2009]
[2010]
Underfull \hbox (badness 3039) in paragraph at lines 392--394
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi
ne to use. Over-rides any

[2011]
Underfull \hbox (badness 1142) in paragraph at lines 464--468
\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory

[2012]
[2013]
[2014]
[2015]
[2016]
[2017]
[2018] [2019]
[2020]
[2021]
[2022]
[2023]
[2024]
Underfull \hbox (badness 1014) in paragraph at lines 1220--1222
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

Underfull \hbox (badness 7238) in paragraph at lines 1226--1228
[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous

[2025]
Underfull \hbox (badness 10000) in paragraph at lines 1263--1266
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1263--1266
[]\T1/zi4/m/sl/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and 
[]\T1/zi4/m/sl/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,

[2026]
[2027]
[2028]
[2029]
[2030]
[2031]
Underfull \hbox (badness 10000) in paragraph at lines 1637--1640
[]\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/sl/10 CRAN_aliases_db[]\T1/ptm
/m/n/10 , []\T1/zi4/m/sl/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10
 CRAN_current_db []\T1/ptm/m/n/10 and

[2032]
[2033]
Underfull \hbox (badness 4096) in paragraph at lines 1756--1764
\T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

Underfull \hbox (badness 1082) in paragraph at lines 1766--1768
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 for all known trees (see

[2034]
[2035]
[2036]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1967 \aliasA{GSC}{find\_gs\_cmd}{GSC}
                                       
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC
MD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1968 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                  
[2037]
[2038]
[2039]
[2040]
[2041]
[2042]
[2043]
[2044]
Underfull \hbox (badness 3386) in paragraph at lines 2442--2445
[]\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/sl/10 as.Rconcordance []\T1
/ptm/m/n/10 searches for strings match-ing the pat-tern of

[2045]
[2046]
Underfull \hbox (badness 4096) in paragraph at lines 2582--2590
\T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

[2047]
[2048]
[2049]
[2050]
[2051]
[2052]
[2053]
[2054]
[2055]
[2056]
[2057]
[2058]
[2059]
[2060]
[2061]
Underfull \hbox (badness 1424) in paragraph at lines 3516--3518
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
-tor of links, as re-turned by

[2062]
[2063]
[2064]
[2065]
[2066]
[2067]
[2068]
[2069]
[2070]
[2071]
[2072]
Underfull \hbox (badness 10000) in paragraph at lines 4232--4234
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,

[2073]
[2074]
[2075]
Underfull \hbox (badness 10000) in paragraph at lines 4388--4391
[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/sl/10 texi2dvi []\T1/ptm/m/n/10 
5.0 and later; []\T1/zi4/m/sl/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-
tion

[2076]
[2077]
[2078]
[2079]
[2080]
Underfull \hbox (badness 1796) in paragraph at lines 4745--4750
[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/sl/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/sl/10 type =
=

[2081]
[2082]
Underfull \hbox (badness 1838) in paragraph at lines 4831--4837
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

Underfull \hbox (badness 10000) in paragraph at lines 4831--4837
\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file

[2083]
[2084]
[2085]
[2086]
Underfull \hbox (badness 2197) in paragraph at lines 5112--5122
[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/sl/10 available.packages[][][][]\T1/ptm/m/n/10 :

[2087]
Underfull \hbox (badness 1571) in paragraph at lines 5178--5182
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by

[2088]
[2089]
[2090]
[2091]) (./utils-pkg.tex
[2092]
Chapter 14.

[2093]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/sl/10 insertions[]\T1/ptm/m/n/10 ',

[2094]
[2095]
[2096]
[2097]
[2098]
[2099]
[2100]
[2101]
[2102]
[2103]
Underfull \hbox (badness 10000) in paragraph at lines 728--734
[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/sl/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/sl/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 728--734
[]\T1/zi4/m/sl/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10
 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the

[2104]
[2105]
[2106]
Underfull \hbox (badness 3861) in paragraph at lines 934--939
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/sl/10 
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,

[2107]
[2108]
[2109]
Underfull \hbox (badness 10000) in paragraph at lines 1139--1141
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing

[2110]
[2111]
[2112]
Underfull \vbox (badness 10000) has occurred while \output is active
[2113]
[2114]
[2115]
[2116]
[2117]
Underfull \hbox (badness 1371) in paragraph at lines 1666--1668
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to

[2118]
[2119]
[2120]
[2121]
[2122]
[2123]
[2124]
[2125]
[2126]
[2127]
[2128]
[2129]
Underfull \hbox (badness 2057) in paragraph at lines 2386--2388
[]\T1/ptm/m/n/10 None for []\T1/zi4/m/sl/10 chooseCRANmirror()[]\T1/ptm/m/n/10 
, this func-tion is in-voked for its side ef-fect of up-dat-ing

[2130]
Underfull \hbox (badness 2150) in paragraph at lines 2461--2468
[]\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/sl/10 citation() []\T1
/ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print

Underfull \hbox (badness 1400) in paragraph at lines 2461--2468
\T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I
f a pack-age has more

[2131]
[2132]
[2133]
Underfull \vbox (badness 3803) has occurred while \output is active
[2134]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2738 ... the Clipboard in MS Windows}{clipboard}
                                                  
[2135]
[2136]
[2137]
[2138]
[2139]
[2140]
[2141]
[2142]
[2143]
[2144]
[2145]
[2146]
[2147]
[2148]
[2149]
[2150]
[2151]
[2152]
[2153]
[2154]
[2155]
Underfull \hbox (badness 6842) in paragraph at lines 4048--4053
[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/sl/10 "libcurl" []\T1/ptm/m/n/1
0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use


[2156]
Underfull \hbox (badness 1430) in paragraph at lines 4111--4115
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the []\T1/zi4/m/sl/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the

[2157]
Underfull \hbox (badness 1184) in paragraph at lines 4182--4198
[]\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/sl/10 method = "libcurl"[]\T1/ptm
/m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS

Underfull \hbox (badness 1019) in paragraph at lines 4182--4198
\T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/sl/10 "Schannel"[]\T1/ptm/m/n/10 '. If
 it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari-

Underfull \hbox (badness 1668) in paragraph at lines 4182--4198
\T1/ptm/m/n/10 able []\T1/zi4/m/sl/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s
et to a path to a cer-tifi-cate bun-dle file, usu-ally named

[2158]
[2159]
Underfull \hbox (badness 10000) in paragraph at lines 4332--4334
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/sl/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and

[2160]
[2161]
[2162]
[2163]
[2164]
[2165]
[2166]
[2167]
[2168]
[2169]
[2170]
[2171]
[2172]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5111 ...mat Unordered and Ordered Lists}{format}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5111 ...mat Unordered and Ordered Lists}{format}
                                                  
[2173]
[2174]
[2175]
[2176]
[2177]
[2178]
[2179]
[2180]
Underfull \hbox (badness 1622) in paragraph at lines 5634--5638
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the

[2181]
[2182]
[2183]
[2184]
[2185]
[2186]
Underfull \hbox (badness 1448) in paragraph at lines 6019--6024
[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing

[2187]
[2188]
[2189]
[2190]
[2191]
[2192]
[2193]
[2194]
Underfull \hbox (badness 1371) in paragraph at lines 6567--6569
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to

[2195]
[2196]
Underfull \hbox (badness 1502) in paragraph at lines 6656--6662
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

Underfull \hbox (badness 2103) in paragraph at lines 6656--6662
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file

[2197]
[2198]
Underfull \hbox (badness 10000) in paragraph at lines 6833--6842
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,

Underfull \hbox (badness 3354) in paragraph at lines 6833--6842
\T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/sl/10 /html/packages.html\T1
/ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/sl/10 make.packages.html
[][][]()[]\T1/ptm/m/n/10 .

[2199]
Underfull \hbox (badness 2150) in paragraph at lines 6895--6898
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See

[2200]
[2201]
Underfull \hbox (badness 3118) in paragraph at lines 7034--7036
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for

[2202]
[2203]
[2204]
Underfull \hbox (badness 1325) in paragraph at lines 7213--7217
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/sl/10 available.pack
ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able

[2205]
Underfull \hbox (badness 1424) in paragraph at lines 7306--7309
[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to

[2206]
Underfull \hbox (badness 3219) in paragraph at lines 7378--7385
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/s
l/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-

Underfull \hbox (badness 5175) in paragraph at lines 7378--7385
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

Underfull \hbox (badness 1342) in paragraph at lines 7378--7385
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by

Underfull \hbox (badness 1596) in paragraph at lines 7378--7385
[][][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")[]
\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 type = "both" []\T1/ptm/m/n/10 will be silen
tly

Underfull \hbox (badness 2932) in paragraph at lines 7386--7389
[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/sl/10 type = "source" []\T1/p
tm/m/n/10 al-ways works pro-vided the pack-age con-tains no

[2207]
[2208]
Underfull \hbox (badness 1024) in paragraph at lines 7515--7518
[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/sl/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 , ] []\T1/
ptm/m/n/10 will

Underfull \hbox (badness 10000) in paragraph at lines 7548--7553
[][][]\T1/zi4/m/sl/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s
l/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,

[2209]
Underfull \hbox (badness 5133) in paragraph at lines 7607--7611
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each
 pack-age's

[2210]
[2211]
[2212]
[2213]
[2214]
[2215]
[2216]
[2217]
[2218]
[2219]
[2220]
Underfull \hbox (badness 10000) in paragraph at lines 8271--8273
[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/sl/10 methods(..)[]\T1/pt
m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class

[2221]
[2222]
[2223]
[2224]
[2225]
[2226]
[2227]
[2228] [2229]
[2230]
[2231]
[2232]
[2233]
Underfull \hbox (badness 2310) in paragraph at lines 9058--9063
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,

[2234]
[2235]
[2236]
[2237]
[2238]
[2239]
[2240]
[2241]
[2242]
Underfull \hbox (badness 1248) in paragraph at lines 9629--9633
[]\T1/zi4/m/sl/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the

[2243]
Underfull \hbox (badness 1789) in paragraph at lines 9707--9709
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the

[2244]
[2245]
[2246]
[2247]
Underfull \hbox (badness 2600) in paragraph at lines 9931--9934
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic;
 de-faults to

[2248]
[2249]
[2250]
[2251]
[2252]
[2253]
[2254]
[2255]
[2256]
Underfull \hbox (badness 1097) in paragraph at lines 10568--10571
[]\T1/ptm/m/n/10 The name []\T1/zi4/m/sl/10 "clipboard" []\T1/ptm/m/n/10 may al
so be used on Win-dows, in which case

[2257]
[2258]
Underfull \hbox (badness 3000) in paragraph at lines 10704--10709
[][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
sl/10 read.table[][][][]\T1/ptm/m/n/10 ;

[2259]
[2260]
[2261]
[2262]
[2263]
[2264]
[2265]
[2266]
[2267]
Underfull \hbox (badness 2134) in paragraph at lines 11299--11304
[][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
sl/10 write.table[][][][]\T1/ptm/m/n/10 ;

[2268]
Underfull \hbox (badness 10000) in paragraph at lines 11355--11360
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for


Underfull \hbox (badness 10000) in paragraph at lines 11355--11360
[]\T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 HKEY_C
LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/
10 ,

[2269]
[2270]
[2271]
[2272]
[2273]
[2274]
[2275]
[2276]
Underfull \hbox (badness 1824) in paragraph at lines 11853--11857
\T1/zi4/m/sl/10 / / en . wikipedia . org / w / index . php ? title = Roman _ nu
merals & oldid = 1188781837$[][]\T1/ptm/m/n/10 . Ac-cessed

[2277]
[2278]
[2279]
[2280]
[2281]
[2282]
[2283]
Underfull \hbox (badness 4060) in paragraph at lines 12299--12302
[]\T1/ptm/m/n/10 If `[]\T1/zi4/m/sl/10 --default-packages[]\T1/ptm/m/n/10 ' is 
not used, then []\T1/zi4/m/sl/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-
ment vari-able

Overfull \hbox (18.77168pt too wide) in paragraph at lines 12322--12322
 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 

[2284]
[2285]
[2286]
[2287]
Underfull \hbox (badness 2150) in paragraph at lines 12577--12579
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac
s / manual /

[2288]
[2289]
[2290]
[2291]
Underfull \hbox (badness 10000) in paragraph at lines 12797--12801
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/sl/10 stylepath []\T1/ptm/m/n/10 
is now taken from the en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 12830--12836
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a

[2292]
Underfull \hbox (badness 2762) in paragraph at lines 12845--12851
\T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin
ce 2018). Ei-ther set

[2293]
[2294]
Underfull \hbox (badness 1009) in paragraph at lines 13020--13032
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If

Underfull \hbox (badness 4779) in paragraph at lines 13060--13062
[]\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI ([]\T1/zi4/m/sl/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do
ws and

[2295]
Underfull \hbox (badness 1077) in paragraph at lines 13090--13097
\T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p
er-sonal' di-rec-tory, oth-er-wise to

[2296]
[2297]
[2298]
[2299]
[2300]
[2301]
Underfull \hbox (badness 3780) in paragraph at lines 13515--13521
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\
T1/zi4/m/sl/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via

[2302]
Underfull \hbox (badness 2635) in paragraph at lines 13533--13536
[]\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/sl/10 CRAN[]\T1/ptm/m/n/10 ' is treate
d spe-cially: the value is taken from the cur-rent set-ting of

[2303]
[2304]
[2305]
Underfull \hbox (badness 2302) in paragraph at lines 13743--13745
[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call

[2306]
[2307]
[2308]
[2309]
[2310]
Underfull \hbox (badness 4441) in paragraph at lines 14042--14047
[]\T1/ptm/m/n/10 logical; if []\T1/zi4/m/sl/10 TRUE []\T1/ptm/m/n/10 (de-fault)
, [][][]\T1/zi4/m/sl/10 deparse[][][](control = \T1/ptm/m/sl/10 control\T1/zi4/
m/sl/10 ) []\T1/ptm/m/n/10 will not have

Underfull \hbox (badness 5970) in paragraph at lines 14051--14054
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive

[2311]
[2312]
[2313]
[2314]
[2315]
[2316]
[2317]
Underfull \hbox (badness 2932) in paragraph at lines 14482--14489
[]\T1/ptm/m/n/10 If []\T1/zi4/m/sl/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa
ult) then the avail-able syn-tax ob-jects are con-sulted in turn,

Underfull \hbox (badness 1688) in paragraph at lines 14482--14489
\T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/sl/10 extension []\T1/ptm/m/n
/10 com-po-nent matches (as a reg-exp) the file name. Ob-

[2318]
[2319]
[2320]
[2321]
Underfull \hbox (badness 6510) in paragraph at lines 14794--14798
[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 is set 
to the com-mand []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men
t vari-able

[2322]
Underfull \hbox (badness 10000) in paragraph at lines 14801--14804
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / pubs . opengroup 
. org /

Underfull \hbox (badness 2245) in paragraph at lines 14801--14804
\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX

[2323]
[2324]
[2325]
[2326]
[2327]
[2328]
[2329]
[2330]
[2331]
[2332]
Underfull \hbox (badness 10000) in paragraph at lines 15474--15479
[]\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/sl/10 destdir []\T1/ptm/m/n/10 a
nd []\T1/zi4/m/sl/10 dependencies []\T1/ptm/m/n/10 to be passed to

Underfull \hbox (badness 3861) in paragraph at lines 15474--15479
[][][]\T1/zi4/m/sl/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 max_repo_cache_age [
]\T1/ptm/m/n/10 and

Underfull \hbox (badness 1052) in paragraph at lines 15480--15482
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See

Underfull \hbox (badness 10000) in paragraph at lines 15539--15542
[][][]\T1/zi4/m/sl/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/
sl/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download
.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][
][]\T1/ptm/m/n/10 ,

[2333]
[2334]
[2335]
[2336]
[2337]
[2338]
[2339]
[2340]
[2341]
[2342]
[2343]
[2344]
[2345]
[2346]
[2347]
[2348])
No file refman.ind.
(./refman.aux)

LaTeX Font Warning: Some font shapes were not available, defaults substituted.


Package rerunfilecheck Warning: File `refman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.

 )
(see the transcript file for additional information)
pdfTeX warning (dest): name{Rfn.write.matrix} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.knitr} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.restore} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.setup} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.ncols} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.mathjaxr} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do
es not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lmrob} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rlm} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.nlsList} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no
t exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rBind} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cBind} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no
t exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.roundX} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.base.Rdash.deprecated} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, 
replaced by a fixed one

 </tmp/texfonts/pk/ljfour/jknappen/ec/tctt1000.600pk>
kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tctt0900
mkdir: cannot create directory '././nonexistent': Permission denied
mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tctt0900
This is METAFONT, Version 2.71828182 (TeX Live 2025/dev/Debian) (preloaded base=mf)

(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tctt0900.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf)
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tctt.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf
 Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf
 Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf
 Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf
 Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [27] [29])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf
 Ok [100] [109] [98] [99] [108])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf
 Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31] [32] [36] [39] [44]
[45] [46] [42] [47] [60] [61] [62] [77] [79] [87] [110] [91] [93] [94] [95]
[96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137]
[138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149]
[150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161]
[162] [163] [164] [165] [166] [167] [168] [169] [171] [172] [173] [174]
[175] [177] [176] [180] [181] [182] [183] [184] [187] [191] [214] [246])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf
 Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf
 Ok [185] [178] [179] [170] [186])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf
 Ok [188] [189] [190]) ) ) )
Font metrics written on tctt0900.tfm.
Output written on tctt0900.600gf (128 characters, 17564 bytes).
Transcript written on tctt0900.log.
mktexpk: /tmp/texfonts/pk/ljfour/jknappen/ec/tctt0900.600pk: successfully generated.
 </tmp/texfonts/pk/ljfour/
jknappen/ec/tctt0900.600pk></usr/share/texlive/texmf-dist/fonts/type1/public/in
consolata/Inconsolata-zi4b.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/inconsolata/Inconsolata-zi4r.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cmextra/cmbsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmib10.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw
/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8
a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi8a.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/tex
mf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/urw/times/utmri8a.pfb>
Output written on refman.pdf (2349 pages, 5941982 bytes).
Transcript written on refman.log.
This is makeindex, version 2.17 [TeX Live 2025/dev] (kpathsea + Thai support).
Scanning input file refman.idx...................done (15186 entries accepted, 39 rejected).
Sorting entries....................................................................................................................................................................done (240185 comparisons).
Generating output file refman.ind..................done (15174 lines written, 51 warnings).
Output written in refman.ind.
Transcript written in refman.ilg.
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./refman.tex
LaTeX2e <2024-11-01> patch level 2
L3 programming layer <2025-01-18>
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2024/06/29 v1.4n Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty)
(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/mathrsfs.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty
`inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex)))))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty
(/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
(/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(/usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
(/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))
(/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
(/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))))
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
Writing index file refman.idx
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
(./refman.aux)
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(./refman.out) (./refman.out)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf-
dist/fonts/enc/dvips/base/8r.enc}] (./refman.toc
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/ursfs.fd)
[1{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc}]
[2]
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[10]
[11]
[12]
[13]
[14]
[15]
[16]
[17]
[18]
[19]
[20]
[21]
[22]
[23]
[24]
[25]
[26]
[27]
[28]
[29]
[30])
[31]
[32] (./base-pkg.tex
Chapter 1.

[1]
[2]
Underfull \hbox (badness 6252) in paragraph at lines 149--157
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [
]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It

Underfull \hbox (badness 10000) in paragraph at lines 149--157
\T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T
1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base

Underfull \hbox (badness 10000) in paragraph at lines 149--157
[]\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base

Underfull \hbox (badness 10000) in paragraph at lines 149--157
\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z
i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As

Underfull \hbox (badness 4995) in paragraph at lines 149--157
[]\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by []
\T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 ,

[3]
[4]
[5]
Underfull \hbox (badness 1178) in paragraph at lines 337--340
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/
n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues

[6]
[7]
[8]
[9]
Underfull \hbox (badness 2556) in paragraph at lines 572--578
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ',

[10]
[11]
[12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[13{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}]
[14]
[15]
[16]
[17]
[18]
[19]
[20]
[21]
[22]
[23]
[24]
[25]
[26]
[27]
[28]
[29]
[30]
Underfull \vbox (badness 3803) has occurred while \output is active
[31]
[32]
[33]
[34]
[35]
[36]
Overfull \hbox (26.27782pt too wide) in paragraph at lines 2261--2261
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 

[37]
[38]
[39]
[40]
[41]
[42]
[43]
[44]
[45]
[46]
Underfull \hbox (badness 1721) in paragraph at lines 2926--2930
[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p
tm/m/n/10 ; fur-ther,

[47]
[48]
[49]
[50]
[51]
[52]
[53]
Underfull \hbox (badness 2538) in paragraph at lines 3404--3407
[]\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[]
[][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE,

[54]
[55]
[56]
[57]
[58]
[59]
[60]
[61]
[62]
[63]
[64]
[65]
[66]
Underfull \hbox (badness 10000) in paragraph at lines 4200--4202
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting

[67]
[68]
[69]
[70]
[71]
[72]
[73]
[74]
[75]
[76]
[77]
[78]
[79]
[80]
[81]
[82]
[83]
[84]
[85]
[86]
[87]
Underfull \hbox (badness 2521) in paragraph at lines 5551--5553
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by

[88]
[89]
[90]
[91]
[92]
[93]
[94]
[95]
[96]
[97]
[98]
[99]
[100]
[101]
[102]
[103]
[104]
[105]
[106]
[107]
Overfull \hbox (5.27168pt too wide) in paragraph at lines 6834--6834
 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 

[108]
[109]
[110]
[111]
[112]
[113]
[114]
[115]
[116]
[117]
[118]
[119]
Underfull \hbox (badness 1303) in paragraph at lines 7730--7737
[]\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n
/10 only. This reads the

[120]
Underfull \hbox (badness 2261) in paragraph at lines 7741--7746
\T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1
/zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen
et . net / ~conrad / software /

[121]
[122]
Underfull \vbox (badness 10000) has occurred while \output is active
[123]
[124]
[125]
[126]
[127]
[128]
[129]
[130]
[131]
Underfull \hbox (badness 2096) in paragraph at lines 8474--8478
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .

[132]
[133]
Underfull \hbox (badness 2351) in paragraph at lines 8589--8592
[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,

[134]
[135]
[136]
[137]
[138]
Underfull \hbox (badness 4479) in paragraph at lines 8906--8917
[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),

[139]
[140]
[141]
[142]
[143]
[144]
Underfull \hbox (badness 1629) in paragraph at lines 9334--9346
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

Underfull \hbox (badness 2875) in paragraph at lines 9334--9346
[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31

[145]
[146]
[147]
[148]
[149]
[150]
[151]
[152]
[153]
[154]
[155]
[156]
[157]
Underfull \hbox (badness 1178) in paragraph at lines 10200--10204
[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
 atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names 
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-

[158]
[159]
[160]
[161]
[162]
[163]
[164]
[165]
[166]
[167]
[168]
[169]
[170]
[171]
[172]
[173]
[174]
[175]
[176]
[177]
[178]
[179]
[180]
[181]
[182]
[183]
[184]
[185]
[186]
[187]
[188]
[189]
[190]
[191]
[192]
[193]
Underfull \hbox (badness 2744) in paragraph at lines 12540--12542
[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see

[194]
[195]
[196]
[197]
[198]
[199]
[200]
[201]
Underfull \vbox (badness 10000) has occurred while \output is active
[202]
[203]
[204]
[205]
[206]
[207]
[208]
[209]
[210]
[211]
[212]
[213]
[214]
[215]
[216]
[217]
[218]
[219]
[220]
[221]
[222]
[223]
[224]
[225]
[226]
Underfull \hbox (badness 2253) in paragraph at lines 14746--14748
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see

Underfull \hbox (badness 1490) in paragraph at lines 14781--14784
[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the

[227]
Underfull \hbox (badness 1565) in paragraph at lines 14863--14867
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and

[228]
Underfull \hbox (badness 4927) in paragraph at lines 14914--14916
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/zi4/m/n/10 fsep =

[229]
[230]
[231]
Underfull \hbox (badness 1466) in paragraph at lines 15065--15068
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and

[232]
Underfull \hbox (badness 10000) in paragraph at lines 15196--15200
[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 15207--15210
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /

[233]
[234]
[235]
[236]
[237]
Underfull \hbox (badness 3965) in paragraph at lines 15504--15508
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,

[238]
[239]
[240]
[241]
[242]
[243]
[244]
[245]
Underfull \hbox (badness 5260) in paragraph at lines 16006--16006
[]\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/
ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma
ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 ,

[246]
[247]
[248]
[249]
Underfull \hbox (badness 4429) in paragraph at lines 16296--16299
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for

[250]
[251]
Underfull \hbox (badness 10000) in paragraph at lines 16403--16405
[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/zi4/m/n/10 .format.zeros(*,

[252]
Underfull \hbox (badness 2035) in paragraph at lines 16476--16480
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 
R \T1/ptm/m/n/10 3.2.0: for use within

[253]
Underfull \vbox (badness 10000) has occurred while \output is active
[254]
[255]
[256]
[257]
[258]
[259]
[260]
[261]
[262]
Underfull \hbox (badness 2452) in paragraph at lines 17099--17103
[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 17099--17103
\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and

[263]
[264]
[265]
Underfull \hbox (badness 1092) in paragraph at lines 17273--17278
[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing

[266]
[267]
[268]
Underfull \hbox (badness 6741) in paragraph at lines 17526--17530
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,

[269]
[270]
[271]
[272]
[273]
[274]
[275]
[276]
[277]
[278]
[279]
Underfull \vbox (badness 3803) has occurred while \output is active
[280]
Underfull \vbox (badness 10000) has occurred while \output is active
[281]
[282]
[283]
[284]
[285]
[286]
[287]
[288]
[289]
[290]
Underfull \hbox (badness 1769) in paragraph at lines 18999--19002
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor

[291]
[292]
[293]
[294]
[295]
Underfull \hbox (badness 10000) in paragraph at lines 19308--19310
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /

Underfull \hbox (badness 2088) in paragraph at lines 19314--19323
[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /

[296]
[297]
[298]
[299]
[300]
[301]
[302]
[303]
[304]
[305]
Underfull \hbox (badness 1442) in paragraph at lines 19922--19924
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see

[306]
Underfull \hbox (badness 2452) in paragraph at lines 20018--20044
[][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 
as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt
m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 5726) in paragraph at lines 20018--20044
[][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en
vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma
trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][]

[307]
[308]
[309]
[310]
[311]
[312]
Underfull \hbox (badness 1248) in paragraph at lines 20416--20419
[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,

[313]
[314]
[315]
[316]
[317]
Underfull \hbox (badness 4739) in paragraph at lines 20683--20685
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see

[318]
[319]
[320]
[321]
[322]
Underfull \vbox (badness 10000) has occurred while \output is active
[323]
[324]
[325]
[326]
[327]
[328]
[329]
[330]
[331]
[332]
[333]
[334]
[335]
[336]
Underfull \hbox (badness 2469) in paragraph at lines 21851--21856
[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and

[337]
Underfull \hbox (badness 1675) in paragraph at lines 21938--21947
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3189) in paragraph at lines 21948--21961
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
 or empty, the

[338]
Underfull \hbox (badness 10000) in paragraph at lines 21996--21999
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-

Underfull \hbox (badness 4752) in paragraph at lines 21996--21999
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may 
be opened by

[339]
[340]
Underfull \hbox (badness 1014) in paragraph at lines 22130--22135
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if

[341]
[342]
[343]
[344]
[345]
[346]
[347]
[348]
[349]
[350]
[351]
[352]
[353]
Underfull \hbox (badness 1264) in paragraph at lines 22977--22985
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:

Underfull \hbox (badness 4441) in paragraph at lines 23012--23015
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,

[354]
[355]
[356]
[357]
[358]
[359]
[360]
[361]
[362]
[363]
[364]
[365]
[366]
Underfull \hbox (badness 5231) in paragraph at lines 23830--23832
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==

[367]
[368]
[369]
[370]
[371]
[372]
[373]
[374]
[375]
[376]
[377]
[378]
[379]
[380]
[381]
[382]
[383]
Underfull \hbox (badness 6380) in paragraph at lines 24940--24946
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress
ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-

Underfull \hbox (badness 1472) in paragraph at lines 24940--24946
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ 
_ Utils$[][]

[384]
[385]
[386]
[387]
[388]
[389]
[390]
[391]
[392]
Underfull \hbox (badness 2790) in paragraph at lines 25453--25456
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 25453--25456
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by

[393]
[394]
[395]
[396]
[397]
Underfull \hbox (badness 1194) in paragraph at lines 25781--25784
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls

[398]
[399]
[400]
Underfull \hbox (badness 2368) in paragraph at lines 25988--25994
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,

[401]
[402]
[403]
[404]
[405]
[406]
Underfull \hbox (badness 10000) in paragraph at lines 26378--26381
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by

[407]
[408]
[409]
[410]
[411]
[412]
[413]
[414]
[415]
[416]
Underfull \hbox (badness 10000) in paragraph at lines 27006--27008
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%

[417]
[418]
[419]
[420]
[421]
[422]
[423]
Underfull \hbox (badness 2443) in paragraph at lines 27497--27505
\T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob
-jects. For

[424]
[425]
[426]
[427]
[428]
[429]
[430]
Underfull \hbox (badness 1881) in paragraph at lines 27927--27930
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 27952--27954
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see


[431]
[432]
Underfull \hbox (badness 2142) in paragraph at lines 28093--28097
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 28150--28155
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

[433]
[434]
[435]
[436]
Underfull \hbox (badness 10000) in paragraph at lines 28446--28452
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 28446--28452
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 28446--28452
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 5878) in paragraph at lines 28459--28462
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p
tm/m/n/10 and

Underfull \hbox (badness 2689) in paragraph at lines 28485--28487
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 28531--28536
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly

[437]
Underfull \hbox (badness 2529) in paragraph at lines 28537--28548
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 28537--28548
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and

Underfull \hbox (badness 7203) in paragraph at lines 28549--28552
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and

[438]
[439]
[440]
[441]
[442]
Underfull \vbox (badness 10000) has occurred while \output is active
[443]
Underfull \hbox (badness 10000) in paragraph at lines 28967--28971
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],

[444]
[445]
Underfull \hbox (badness 10000) in paragraph at lines 29114--29117
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,

[446]
Underfull \hbox (badness 7925) in paragraph at lines 29195--29199
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to

Underfull \hbox (badness 1253) in paragraph at lines 29195--29199
[][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 ,
 which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) 
and [][][]\T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 2521) in paragraph at lines 29200--29209
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s,

[447]
[448]
[449]
[450]
[451]
[452]
[453]
[454]
[455]
[456]
[457]
[458]
[459]
[460]
[461]
[462]
Underfull \hbox (badness 2726) in paragraph at lines 30214--30217
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see

[463]
[464]
[465]
[466]
[467]
[468]
[469]
[470]
[471]
[472]
[473]
[474]
[475]
[476]
[477]
[478]
[479]
[480]
[481]
Underfull \vbox (badness 3803) has occurred while \output is active
[482]
[483]
[484]
[485]
[486]
[487]
[488]
[489]
[490]
Underfull \hbox (badness 1533) in paragraph at lines 32024--32027
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the

[491]
[492]
[493]
Underfull \hbox (badness 1163) in paragraph at lines 32195--32206
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in

[494]
[495]
[496]
[497]
[498]
[499]
[500]
Underfull \vbox (badness 3803) has occurred while \output is active
[501]
[502]
Underfull \hbox (badness 6300) in paragraph at lines 32741--32743
[]\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr
it-ing R Ex-ten-sions' man-ual:

[503]
[504]
[505]
[506]
[507]
[508]
[509]
[510]
[511]
[512]
[513]
[514]
[515]
[516]
[517]
[518]
[519]
Underfull \hbox (badness 10000) in paragraph at lines 33864--33868
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 33864--33868
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions 
of the matches are also re-turned by name.

Underfull \hbox (badness 3557) in paragraph at lines 33885--33887
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /

Underfull \hbox (badness 1122) in paragraph at lines 33888--33892
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /

[520]
[521]
Underfull \vbox (badness 10000) has occurred while \output is active
[522]
[523]
[524]
[525]
[526]
[527]
[528]
[529]
Underfull \hbox (badness 1655) in paragraph at lines 34490--34492
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for

[530]
[531]
[532]
[533]
[534]
[535]
[536]
[537]
[538]
[539]
[540]
[541]
[542]
[543]
[544]
[545]
[546]
[547]
[548]
Underfull \hbox (badness 2261) in paragraph at lines 35693--35698
[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if

[549]
[550]
[551]
[552]
[553]
[554]
[555]
[556]
[557]
[558]
[559]
[560]
[561]
[562]
[563]
[564]
Underfull \hbox (badness 3668) in paragraph at lines 36728--36732
[]\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in-
te-ger con-nec-tion de-scrip-tors for use with

[565]
Underfull \hbox (badness 10000) in paragraph at lines 36819--36830
\T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par
sing-[]c-[]command-[]line-[]arguments ?

[566]
[567]
[568]
[569]
[570]
[571]
[572]
[573]
[574]
[575]
[576]
[577]
[578]
[579]
[580]
[581]
[582]
[583]
[584]
[585]
[586]
[587]
[588]
[589]
[590]
Underfull \hbox (badness 10000) in paragraph at lines 38451--38453
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for

[591]
[592]
[593]
[594]
[595]
[596]
[597]
Underfull \hbox (badness 2913) in paragraph at lines 38869--38873
\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by

[598]
[599]
[600]
Underfull \hbox (badness 1072) in paragraph at lines 39115--39119
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

[601]
Underfull \hbox (badness 10000) in paragraph at lines 39120--39124
[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 39160--39166
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 39160--39166
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 39160--39166
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3009) in paragraph at lines 39175--39182
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

Underfull \hbox (badness 1038) in paragraph at lines 39175--39182
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 39175--39182
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 39175--39182
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from

[602]
[603]
[604]
[605]
Underfull \hbox (badness 2644) in paragraph at lines 39410--39414
[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an


[606]
[607]
[608]
Underfull \hbox (badness 1389) in paragraph at lines 39573--39580
[]\T1/ptm/m/n/10 a char-ac-ter string. The de-fault for the []\T1/zi4/m/n/10 fo
rmat []\T1/ptm/m/n/10 meth-ods is []\T1/zi4/m/n/10 "%Y-%m-%d

[609]
[610]
[611]
[612]
[613]
[614]
[615]
[616]
[617]
[618]
[619]
[620]
[621]
[622]
[623]
[624]
[625]
[626]
[627]
[628]
[629]
Underfull \hbox (badness 1158) in paragraph at lines 40939--40941
[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault

[630]
[631]
[632]
[633]
[634]
[635] [636]
[637]
[638]
[639]
Underfull \hbox (badness 1137) in paragraph at lines 41539--41545
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails

Underfull \hbox (badness 4967) in paragraph at lines 41557--41562
[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple

[640]
[641]
Underfull \hbox (badness 1616) in paragraph at lines 41677--41682
[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions

[642]
[643]
[644]
[645]
Underfull \vbox (badness 3803) has occurred while \output is active
[646]
[647]
[648]
[649]
[650]
Underfull \hbox (badness 1472) in paragraph at lines 42224--42227
[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see

[651]
[652]
[653]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 42436.


[654]
[655]
[656]
[657]
[658]
[659]
[660]
[661]
[662]
[663]
[664]
[665]
Underfull \hbox (badness 10000) in paragraph at lines 43175--43179
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca
n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4
/m/sl/10 length(bin) >

[666]
[667]
[668]
[669]
[670]
Underfull \hbox (badness 10000) in paragraph at lines 43534--43537
[][][]\T1/zi4/m/sl/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] 
[][]$https : / / developer . r-[]project . org /

[671]
[672]
[673]
Underfull \hbox (badness 10000) in paragraph at lines 43718--43722
[][][]\T1/zi4/m/sl/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s
l/10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 taskCallb
ackManager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/sl/10 https : / / developer .


[674]
[675]
[676]
[677]
[678]
[679]
[680]
[681]
[682]
[683]
Underfull \hbox (badness 10000) in paragraph at lines 44366--44369
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[]
[] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time
-[]zones /

[684]
[685]
[686]
[687]
[688]
[689]
Underfull \vbox (badness 10000) has occurred while \output is active
[690]
[691]
[692]
[693]
[694]
[695]
[696]
[697]
Underfull \hbox (badness 1990) in paragraph at lines 45282--45290
[]\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an
y er-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 45282--45290
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less

[698]
[699]
[700]
[701]
[702]
[703]
[704]
[705]
[706]
[707]
[708]
[709]
[710]
[711]
[712]
[713]
[714]
[715]
[716]
[717]
[718]
[719]
Underfull \hbox (badness 1014) in paragraph at lines 46719--46722
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me
-di-ately, even if

[720]
[721]
Underfull \hbox (badness 2401) in paragraph at lines 46852--46856
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][]("
warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a

[722]
[723]
Underfull \hbox (badness 3492) in paragraph at lines 46978--46980
[]\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/
ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e.,

[724]
[725]
Underfull \hbox (badness 2111) in paragraph at lines 47064--47069
\T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10
 is not empty, these are used as col-umn names.

[726]
[727]
[728]
Underfull \hbox (badness 4001) in paragraph at lines 47312--47314
[]\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard 
eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/sl/10 https : / / developer 
.

[729]
[730]
[731]
[732]
[733]
[734]
[735]
Underfull \hbox (badness 5417) in paragraph at lines 47713--47717
[]\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re
ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas

[736]
Underfull \hbox (badness 10000) in paragraph at lines 47774--47778
[]\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d
ard' reg-exps, in-clud-ing el-e-ments named

[737]) (./compiler-pkg.tex
[738]
Chapter 2.

[739]
[740]
[741]
[742]) (./datasets-pkg.tex
Chapter 3.

[743]
[744]
[745]
[746]
[747] [748]
[749]
[750]
[751]
[752]
[753]
[754]
[755]
[756]
[757]
[758]
[759]
Underfull \hbox (badness 1097) in paragraph at lines 1034--1038
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.

[760]
[761]
[762]
[763]
[764]
[765]
[766]
[767]
[768]
[769]
[770]
[771] [772]
[773]
[774]
[775]
[776]
[777] [778]
[779]
[780]
[781]
[782] [783]
[784]
[785]
[786]
[787]
[788]
[789]
[790]
[791]
[792]
[793]
[794]
[795]
[796]
[797]
[798]
[799]
[800]
[801]
Overfull \hbox (2.27475pt too wide) in paragraph at lines 3524--3524
 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis
t.html#Geographic%20Centers[] 

[802]
[803]
[804]
[805]
[806]
[807]
[808]
[809]
[810]
[811]
[812]
[813]
[814]
[815]
[816]
[817]
[818]
[819]
[820]
[821]
[822]
[823]
[824]
[825]) (./grDevices-pkg.tex
[826]
Chapter 4.

[827]
[828]
[829]
[830]
[831]
Underfull \hbox (badness 2221) in paragraph at lines 282--286
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[]
\T1/ptm/m/n/10 , with iden-ti-cal mean-ing to

Underfull \hbox (badness 10000) in paragraph at lines 297--302
[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/sl/10 axisTicks[][][]() []\T1
/ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1
/ptm/m/n/10 in

[832]
[833]
[834]
[835]
[836]
[837]
[838]
[839]
[840]
Underfull \hbox (badness 1424) in paragraph at lines 901--903
[][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a
nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b
e spec-i-fied as

[841]
[842]
[843]
[844]
[845]
[846]
Underfull \hbox (badness 5175) in paragraph at lines 1229--1231
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in

[847]
[848]
Underfull \hbox (badness 2512) in paragraph at lines 1348--1350
[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar
chive . org / web / 20190613001950 / http : / / efg2 . com /

[849]
[850]
[851]
[852]
[853]
Underfull \hbox (badness 1490) in paragraph at lines 1648--1653
\T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and 
[][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []
\T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10
 and

Underfull \hbox (badness 3302) in paragraph at lines 1661--1665
[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of

[854]
[855]
[856]
[857]
[858]
[859]
Underfull \hbox (badness 1325) in paragraph at lines 2076--2086
[]\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png
alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/
m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm
/m/n/10 ,

[860]
[861]
Underfull \hbox (badness 10000) in paragraph at lines 2188--2190
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of

[862]
[863]
[864]
Underfull \hbox (badness 6758) in paragraph at lines 2376--2379
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are

[865]
[866]
[867]
[868]
[869]
[870]
[871]
[872]
[873]
[874]
[875]
[876]
Underfull \hbox (badness 10000) in paragraph at lines 3132--3133


[877]
[878]
[879]
[880]
[881]
[882]
[883]
[884]
[885]
[886]
[887]
[888]
Underfull \vbox (badness 3803) has occurred while \output is active
[889]
[890]
[891]
[892]
Underfull \vbox (badness 10000) has occurred while \output is active
[893]
[894]
[895]
[896]
Underfull \hbox (badness 1418) in paragraph at lines 4410--4417
\T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H
elvetica-Narrow"[]\T1/ptm/m/n/10 ,

[897]
[898]
[899]
[900]
[901]
[902]
[903]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.4875 \aliasA{symbol}{plotmath}{symbol}
                                         [904] [905]
[906]
[907]
Underfull \vbox (badness 3803) has occurred while \output is active
[908]
[909]
Underfull \hbox (badness 1584) in paragraph at lines 5268--5270
[]\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1
/zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See

Underfull \hbox (badness 1067) in paragraph at lines 5272--5279
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-

[910]
[911]
[912]
[913]
Underfull \hbox (badness 1377) in paragraph at lines 5574--5579
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues

[914]
[915]
Underfull \hbox (badness 1377) in paragraph at lines 5678--5683
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and

[916]
Underfull \hbox (badness 7344) in paragraph at lines 5747--5749
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso

[917]
[918]
Underfull \hbox (badness 2035) in paragraph at lines 5886--5895
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 5886--5895
\T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti
ca-Narrow"[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 5886--5895
[]\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P
alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1
/zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/
ptm/m/n/10 ,

[919]
Underfull \hbox (badness 10000) in paragraph at lines 5953--5958
[]\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/
zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu /

[920]
[921]
[922]
Underfull \hbox (badness 1546) in paragraph at lines 6093--6101
[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n
/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 ,

[923]
[924]
[925]
[926]
[927]
[928]
Underfull \hbox (badness 6625) in paragraph at lines 6537--6540
[]\T1/ptm/m/n/10 Murrell, P., Ooms, J., Al-laire, J.J. (2015), "Record-ing and 
Re-play-ing the Graph-

[929]
[930]
Underfull \hbox (badness 10000) in paragraph at lines 6641--6644
[]\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (
red/green/blue) into HSV space

[931]
[932]
[933]
[934]
Overfull \hbox (9.73488pt too wide) in paragraph at lines 6878--6878
 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro
blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/
zi4/m/n/9 ):[] 

[935]
[936]
[937]
[938]
[939]
[940]
[941]
[942]
[943]
[944]
Underfull \hbox (badness 1189) in paragraph at lines 7507--7509
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of

[945]
Underfull \hbox (badness 10000) in paragraph at lines 7612--7614
[]\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C
JK lan-guages and

[946]
[947]
[948]
[949]
[950]
Underfull \hbox (badness 3780) in paragraph at lines 7927--7933
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/s
l/10 "AvantGarde"[]\T1/ptm/m/n/10 ,

[951]
[952]
[953]
[954]
[955]
[956]) (./graphics-pkg.tex
Chapter 5.

[957]
[958]
[959]
[960]
[961]
[962]
[963]
[964]
[965]
[966]
[967]
Underfull \vbox (badness 3803) has occurred while \output is active
[968]
[969]
[970]
[971]
[972]
[973]
Overfull \hbox (12.71341pt too wide) in paragraph at lines 1037--1037
 []        \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 

[974]
[975]
[976]
[977]
[978]
[979]
Underfull \hbox (badness 4634) in paragraph at lines 1410--1413
[][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor
ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1
/ptm/m/n/10 ,

[980]
[981]
[982]
[983]
[984]
[985]
[986]
[987]
[988]
[989]
[990]
[991]
[992]
[993]
[994]
[995]
[996]
Underfull \hbox (badness 1728) in paragraph at lines 2388--2390
[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10
 "n" []\T1/ptm/m/n/10 to sup-press and see also

[997]
Underfull \hbox (badness 1009) in paragraph at lines 2481--2488
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to

[998]
[999]
[1000]
[1001]
[1002]
[1003]
[1004]
[1005]
[1006]
[1007]
[1008]
[1009]
[1010]
[1011]
[1012]
[1013]
[1014]
[1015]
[1016]
[1017]
[1018]
[1019]
[1020]
Underfull \vbox (badness 10000) has occurred while \output is active
[1021]
Underfull \vbox (badness 10000) has occurred while \output is active
[1022]
[1023]
[1024]
[1025]
[1026]
[1027]
Underfull \vbox (badness 3803) has occurred while \output is active
[1028]
[1029]
[1030]
[1031]
[1032]
[1033]
[1034]
Underfull \hbox (badness 3229) in paragraph at lines 4733--4738
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see

[1035]
[1036]
[1037]
[1038]
[1039]
Underfull \hbox (badness 1107) in paragraph at lines 5233--5239
[]\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc
aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c
h),

[1040]
[1041]
Underfull \hbox (badness 10000) in paragraph at lines 5362--5365


[1042 </build/reproducible-path/r-base-4.4.3/library/graphics/help/figures/mai.
pdf>]
Underfull \hbox (badness 10000) in paragraph at lines 5423--5425


[1043 </build/reproducible-path/r-base-4.4.3/library/graphics/help/figures/oma.
pdf>]
[1044]
[1045]
[1046]
[1047]
[1048]
[1049]
[1050]
[1051]
[1052]
[1053]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6097 \aliasA{plot}{plot.default}{plot}
                                        
[1054]
[1055]
[1056]
[1057]
[1058]
[1059]
[1060]
[1061]
[1062]
[1063]
[1064]
[1065]
[1066]
[1067]
Overfull \hbox (31.57222pt too wide) in paragraph at lines 6997--6998
[][] 

[1068 </build/reproducible-path/r-base-4.4.3/library/graphics/help/figures/pch.
pdf>]
[1069]
Underfull \vbox (badness 3803) has occurred while \output is active
[1070]
[1071]
[1072]
[1073]
[1074]
[1075]
[1076]
[1077]
[1078]
[1079]
[1080]
[1081]
[1082]
[1083]
[1084]
[1085]
[1086]
[1087]
[1088]
[1089]
[1090]
[1091]
[1092]
[1093]
[1094]
[1095]
[1096]
[1097]
[1098]
[1099]
[1100]
[1101]
[1102]
Underfull \hbox (badness 4954) in paragraph at lines 9109--9111
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/sl/10 par(c("font.sub",

Underfull \hbox (badness 1019) in paragraph at lines 9111--9113
[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa
r(c("font.lab", "cex.lab",

[1103]
[1104]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9191 \HeaderA{units}{Graphical Units}{units}
                                              
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9191 \HeaderA{units}{Graphical Units}{units}
                                              
[1105]
[1106]
[1107]
[1108]) (./grid-pkg.tex
Chapter 6.

[1109]
[1110]
[1111]
[1112]
[1113]
[1114]
[1115]
[1116]
[1117]
Underfull \hbox (badness 2680) in paragraph at lines 551--554
[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an
d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal
-cu-la-tion of

[1118]
[1119]
[1120]
[1121]
[1122] [1123]
[1124]
[1125]
[1126]
[1127]
[1128]
Underfull \hbox (badness 4279) in paragraph at lines 1188--1197
[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/
ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T
1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi
ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 ,

[1129]
[1130]
[1131]
[1132]
[1133]
[1134]
[1135]
[1136]
[1137]
[1138]
[1139]
[1140]
[1141]
[1142]
[1143]
[1144]
[1145]
[1146]
[1147]
[1148]
[1149]
[1150]
[1151]
[1152]
[1153]
[1154]
[1155]
[1156]
[1157]
[1158]
[1159]
[1160]
Underfull \hbox (badness 10000) in paragraph at lines 3103--3105
[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see

[1161]
[1162]
[1163]
[1164]
[1165]
[1166]
[1167]
[1168]
[1169]
[1170]
[1171]
[1172]
[1173]
[1174]
[1175]
[1176]
Underfull \vbox (badness 10000) has occurred while \output is active
[1177]
[1178]
[1179]
[1180]
[1181]
[1182]
[1183]
[1184]
[1185]
[1186]
[1187]
[1188]
[1189]
[1190]
Underfull \hbox (badness 1067) in paragraph at lines 4842--4845
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only

[1191]
[1192]
[1193]
[1194]
[1195]
[1196]
Underfull \hbox (badness 7256) in paragraph at lines 5193--5195
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by

[1197]
[1198]
[1199]
[1200]
[1201]
[1202]
[1203]
Underfull \hbox (badness 2142) in paragraph at lines 5647--5651
[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/
10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or

[1204]
[1205]
Underfull \hbox (badness 4699) in paragraph at lines 5729--5734
[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o
b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 
and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a

[1206]
[1207]
[1208]
[1209]
[1210]
[1211]
[1212]
[1213]
[1214]
[1215]
[1216]
[1217]
[1218]
[1219]
[1220]
[1221]
[1222]
[1223]
[1224]
[1225]
[1226]
[1227]
[1228]
[1229]
[1230]
[1231]
[1232]
[1233]
[1234]
[1235]
[1236]
[1237]) (./methods-pkg.tex
[1238]
Chapter 7.

[1239]
[1240]
[1241]
[1242]
[1243]
[1244]
[1245]
[1246]
Underfull \vbox (badness 10000) has occurred while \output is active
[1247]
Underfull \vbox (badness 10000) has occurred while \output is active
[1248]
[1249]
[1250]
[1251]
[1252]
[1253]
[1254]
[1255]
[1256]
[1257]
Underfull \hbox (badness 2237) in paragraph at lines 1384--1386
[]\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te
nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s
l/10 "package"[]\T1/ptm/m/n/10 , also of class

[1258]
[1259]
[1260]
[1261]
[1262]
[1263]
[1264]
[1265]
[1266]
Underfull \hbox (badness 10000) in paragraph at lines 1980--1985
[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n
/10 can be an ob-ject of class

Underfull \hbox (badness 1038) in paragraph at lines 1980--1985
\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/
m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the

[1267]
[1268]
[1269]
Underfull \hbox (badness 2213) in paragraph at lines 2212--2217
[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/sl/10 where =

[1270]
[1271]
[1272]
[1273]
[1274]
Underfull \hbox (badness 10000) in paragraph at lines 2572--2575
[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] []
\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10
 cre-ate ob-jects of class

[1275]
[1276]
Underfull \hbox (badness 1132) in paragraph at lines 2712--2716
[]\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi
4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10
 slot of the re-turned re-sult is in

[1277]
Underfull \hbox (badness 1033) in paragraph at lines 2748--2753
\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 
re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1
0 re-stores the

[1278]
[1279]
[1280]
[1281]
[1282]
[1283]
[1284]
Underfull \hbox (badness 1102) in paragraph at lines 3305--3307
[]\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string
 name of the pack-age (with-out the ex-tra-ne-ous

[1285]
[1286]
[1287]
[1288]
[1289]
Underfull \hbox (badness 10000) in paragraph at lines 3642--3651
[]\T1/ptm/m/n/10 The

[1290]
[1291]
Underfull \hbox (badness 10000) in paragraph at lines 3762--3763
[] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi
tude = "numeric",

[1292]
Underfull \hbox (badness 10000) in paragraph at lines 3846--3847
[]\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character"
), contains =

[1293]
[1294]
[1295]
[1296]
[1297]
[1298]
[1299]
[1300]
[1301]
[1302]
Underfull \hbox (badness 1769) in paragraph at lines 4477--4483
[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10
 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar


Underfull \hbox (badness 1939) in paragraph at lines 4477--4483
[]\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [
][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u
sed by

[1303]
[1304]
[1305]
[1306]
[1307]
[1308]
[1309]
[1310]
[1311]
[1312]
Underfull \vbox (badness 10000) has occurred while \output is active
[1313]
[1314]
[1315]
Underfull \hbox (badness 4036) in paragraph at lines 5442--5445
[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m
/n/10 the method to use in re-sponse to a

[1316]
[1317]
Underfull \hbox (badness 3803) in paragraph at lines 5517--5519
[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to

[1318]
[1319]
[1320]
Underfull \hbox (badness 1087) in paragraph at lines 5748--5753
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing

[1321]
[1322]
[1323]
[1324]
[1325]
[1326]
[1327]
[1328]
[1329]
Underfull \hbox (badness 1675) in paragraph at lines 6455--6461
[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe
fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class

[1330]
[1331]
[1332]
[1333]
Underfull \vbox (badness 10000) has occurred while \output is active
[1334]
[1335]
[1336]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has 
been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6976 \aliasA{S4}{S3Part}{S4}
                              
[1337]
[1338]
[1339]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7232 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7234 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7235 \aliasA{Math}{S4groupGeneric}{Math}
                                          
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7237 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7238 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                
[1340]
Underfull \hbox (badness 2050) in paragraph at lines 7299--7303
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing

[1341]
[1342]
[1343]
Underfull \hbox (badness 1286) in paragraph at lines 7487--7489
[]\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o
nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions,
 typ-i-cally

[1344]
[1345]
[1346]
[1347]
[1348]
[1349]
[1350]
[1351]
[1352]
[1353]
[1354]
[1355]
[1356]
[1357]
[1358]
[1359]
[1360]
[1361]
[1362]
[1363]
[1364]
[1365]
[1366]
[1367]
[1368]
[1369]
[1370]
Underfull \vbox (badness 10000) has occurred while \output is active
[1371]
[1372]
[1373]
[1374]
[1375]
[1376]
[1377]
[1378]
[1379]
[1380]
[1381]
[1382]
[1383]
[1384]
Underfull \hbox (badness 1158) in paragraph at lines 10494--10497
[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/zi4/m/sl/10 https : / / johnmchambers . su . domains /

[1385]
Underfull \hbox (badness 1852) in paragraph at lines 10572--10576
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,

[1386]
[1387]
[1388]
[1389]) (./parallel-pkg.tex
[1390]
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' []
[]RNG[][][]: see

[1391]
[1392]
[1393]
[1394]
[1395]
Underfull \hbox (badness 1320) in paragraph at lines 300--303
[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.

[1396]
[1397]
[1398]
[1399]
[1400]
[1401]
[1402]
[1403]
[1404]
[1405]
[1406]
[1407]
[1408]
[1409]
[1410]
[1411]
[1412]
Underfull \hbox (badness 3386) in paragraph at lines 1400--1403
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10
 .Random.seed []\T1/ptm/m/n/10 when the

[1413]
[1414]) (./splines-pkg.tex
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 <bates@stat.wisc.edu> \T1/ptm
/m/n/10 and William N. Ven-ables

[1415]
[1416]
[1417]
[1418]
[1419]
[1420]
[1421]
[1422]
[1423]
[1424]
[1425]
[1426]
[1427]
[1428]
[1429]
[1430]) (./stats-pkg.tex
Chapter 10.

[1431]
[1432]
[1433]
[1434]
[1435]
[1436]
[1437]
[1438]
[1439]
[1440]
[1441]
[1442]
[1443]
[1444]
Underfull \hbox (badness 1412) in paragraph at lines 901--903
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 
lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo
r

[1445]
[1446]
[1447]
[1448]
[1449]
[1450]
[1451]
[1452]
Underfull \hbox (badness 2503) in paragraph at lines 1389--1392
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1453]
[1454]
[1455]
[1456]
[1457]
[1458]
[1459]
[1460]
[1461]
[1462]
[1463]
[1464]
[1465]
[1466]
[1467]
[1468]
[1469]
[1470]
[1471]
[1472]
[1473]
[1474]
[1475]
[1476]
[1477]
[1478]
[1479]
[1480]
[1481]
[1482]
[1483]
[1484]
[1485]
[1486]
Underfull \hbox (badness 2503) in paragraph at lines 3561--3564
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1487]
[1488]

Package amsmath Warning: Foreign command \atopwithdelims;
(amsmath)                \frac or \genfrac should be used instead
(amsmath)                 on input line 3674.


[1489]
[1490]
[1491]
[1492]
[1493]
[1494]
[1495]
[1496]
[1497]
[1498]
[1499]
[1500]
[1501]
[1502]
[1503]
[1504]
[1505]
[1506]
Underfull \hbox (badness 3989) in paragraph at lines 4820--4827
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =

[1507]
[1508]
[1509]
[1510]
[1511]
[1512]
[1513]
[1514]
[1515]
[1516]
Underfull \hbox (badness 2556) in paragraph at lines 5474--5477
[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[
]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 
"filter"[]\T1/ptm/m/n/10 . For

[1517]
[1518]
[1519]
[1520]
[1521]
[1522]
[1523]
Underfull \hbox (badness 2503) in paragraph at lines 5886--5890
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1524]
[1525]
[1526]
[1527]
[1528]
[1529]
[1530]
[1531]
[1532]
[1533]
[1534]
[1535]
[1536]
Underfull \hbox (badness 7081) in paragraph at lines 6678--6681
[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c
an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in
g method

Underfull \hbox (badness 10000) in paragraph at lines 6682--6684
[]\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-
gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also

[1537]
[1538]
[1539]
[1540]
[1541]
[1542]
Underfull \vbox (badness 10000) has occurred while \output is active
[1543]
[1544]
[1545]
Underfull \vbox (badness 10000) has occurred while \output is active
[1546]
[1547]
[1548]
[1549]
[1550]
Underfull \hbox (badness 10000) in paragraph at lines 7578--7581
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/zi4/m/sl/10 dist[][][]()[]\T1/ptm/m/n/10 , the

[1551]
[1552]
[1553]
[1554]
[1555]
[1556]
Underfull \vbox (badness 3803) has occurred while \output is active
[1557]
[1558]
[1559]
[1560]
[1561]
[1562]
[1563]
[1564]
[1565]
[1566]
[1567]
[1568]
[1569]
[1570]
[1571]
[1572]
Underfull \vbox (badness 3803) has occurred while \output is active
[1573]
[1574]
[1575]
[1576]
[1577]
[1578]
Underfull \hbox (badness 2626) in paragraph at lines 9275--9278
[]\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\
T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If

[1579]
Underfull \hbox (badness 2503) in paragraph at lines 9382--9386
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1580]
[1581]
[1582]
[1583]
[1584]
[1585]
[1586]
[1587]
[1588]
[1589]
[1590]
[1591]
[1592]
[1593]
[1594]
[1595]
[1596]
[1597]
[1598]
[1599]
[1600]
Underfull \hbox (badness 4518) in paragraph at lines 10730--10735
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1601]
[1602]
[1603]
[1604]
[1605]
Underfull \hbox (badness 2142) in paragraph at lines 11092--11095
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

Underfull \hbox (badness 1253) in paragraph at lines 11111--11114
[]\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t
o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac
h IWLS it-er-a-tion. Hence,

[1606]
Underfull \hbox (badness 1708) in paragraph at lines 11173--11177
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:

[1607]
[1608]
[1609]
[1610]
[1611]
[1612]
Underfull \hbox (badness 1694) in paragraph at lines 11569--11572
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

[1613]
[1614]
[1615]
[1616]
[1617]
[1618]
[1619]
[1620]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.12050 \aliasA{hat}{influence.measures}{hat}
                                             
[1621]
[1622]
Underfull \hbox (badness 1484) in paragraph at lines 12195--12197
[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists
 mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing

[1623]
[1624]
[1625]
[1626]
[1627]
[1628]
[1629]
[1630]
[1631]
[1632]
Underfull \hbox (badness 10000) in paragraph at lines 12782--12784
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d
efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit =

[1633]
[1634]
[1635]
[1636]
[1637]
Underfull \hbox (badness 2894) in paragraph at lines 13124--13128
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method

[1638]
[1639]
[1640]
[1641]
[1642]
[1643]
[1644]
Underfull \hbox (badness 1496) in paragraph at lines 13552--13558
[]\T1/ptm/m/n/10 Gunar Schr�er and Di-et-rich Tren-kler (1995). Ex-act and Ran-
dom-iza-tion Dis-tri-bu-tions of

[1645]
[1646]
[1647]
[1648]
[1649]
[1650]
Underfull \hbox (badness 4518) in paragraph at lines 13955--13960
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1651]
[1652]
[1653]
[1654]
[1655]
[1656]
[1657]
[1658]
[1659]
[1660]
Underfull \hbox (badness 4518) in paragraph at lines 14617--14622
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1661]
[1662]
[1663]
Underfull \hbox (badness 6412) in paragraph at lines 14757--14761
[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int
erpolate", statistics =

Underfull \hbox (badness 1199) in paragraph at lines 14764--14766
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is

[1664]
[1665]
[1666]
[1667]
[1668]
[1669]
[1670]
[1671]
[1672]
[1673]
[1674]
[1675]
[1676]
[1677]
[1678]
[1679]
[1680]
[1681]
Underfull \hbox (badness 2503) in paragraph at lines 15841--15845
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1682]
[1683]
[1684]
[1685]
[1686]
[1687]
[1688]
[1689]
Underfull \hbox (badness 10000) in paragraph at lines 16354--16360
[]\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to

Underfull \hbox (badness 1867) in paragraph at lines 16354--16360
[]\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model.
response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\
T1/ptm/m/n/10 sums any terms

[1690]
[1691]
[1692]
[1693]
[1694]
[1695]
[1696]
[1697]
[1698]
[1699]
[1700]
[1701]
[1702]
[1703]
[1704]
[1705]
[1706]
[1707]
[1708]
[1709]
[1710]
[1711]
[1712]
[1713]
[1714]
[1715]
[1716]
Underfull \hbox (badness 1158) in paragraph at lines 18012--18015
[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T
1/ptm/m/n/10 as the data ar-gu-ment. The ac-

[1717]
[1718]
Underfull \vbox (badness 10000) has occurred while \output is active
[1719]
Underfull \vbox (badness 10000) has occurred while \output is active
[1720]
[1721]
[1722]
[1723]
[1724]
[1725]
[1726]
[1727]
[1728]
[1729]
[1730]
[1731]
[1732]
[1733]
Underfull \hbox (badness 1377) in paragraph at lines 19055--19060
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 19060--19063
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 2343) in paragraph at lines 19073--19077
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 3471) in paragraph at lines 19073--19077
\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) +
 reltol) []\T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 19081--19085
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if

[1734]
[1735]
[1736]
Underfull \vbox (badness 10000) has occurred while \output is active
[1737]
Overfull \hbox (15.73795pt too wide) in paragraph at lines 19306--19306
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

Overfull \hbox (3.75941pt too wide) in paragraph at lines 19309--19309
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 

[1738]
[1739]
[1740]
[1741]
[1742]
[1743]
[1744]
Underfull \hbox (badness 1337) in paragraph at lines 19771--19774
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1745]
[1746]
[1747]
[1748]
[1749]
[1750]
[1751]
[1752]
[1753]
Underfull \hbox (badness 10000) in paragraph at lines 20240--20246
\T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty
 = cook.lty, col = cook.col, text.col

[1754]
[1755]
[1756]
[1757]
[1758]
[1759]
[1760]
Underfull \hbox (badness 1194) in paragraph at lines 20667--20670
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence

[1761]
[1762]
[1763]
[1764]
[1765]
[1766]
Underfull \hbox (badness 2503) in paragraph at lines 21045--21048
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3919) in paragraph at lines 21072--21074
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" 
[]\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson

[1767]
[1768]
[1769]
[1770]
[1771]
[1772]
[1773]
[1774]
[1775]
[1776]
[1777]
[1778]
[1779]
[1780]
[1781]
[1782]
[1783]
[1784]
Underfull \hbox (badness 10000) in paragraph at lines 22150--22156
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,

[1785]
[1786]
[1787]
[1788]
[1789]
[1790]
[1791]
[1792]
[1793]
[1794]
[1795]
[1796]
[1797]
[1798]
[1799]
[1800]
[1801]
[1802]
[1803]
[1804]
[1805]
[1806]
[1807]
[1808]
[1809]
Underfull \hbox (badness 1337) in paragraph at lines 23626--23632
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1810]
[1811]
[1812]
[1813]
[1814]
[1815]
[1816]
[1817]
Underfull \hbox (badness 1436) in paragraph at lines 24116--24119
\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2,

[1818]
Underfull \hbox (badness 10000) in paragraph at lines 24254--24255
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o
rg / wiki / Quantile # Estimating _ quantiles _ from _ a _

[1819]
[1820]
[1821]
[1822]
[1823]
[1824]
[1825]
[1826]
[1827]
[1828]
[1829]
[1830]
[1831]
[1832]
[1833]
[1834]
Underfull \hbox (badness 1824) in paragraph at lines 25224--25230
[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are 
first re-placed by al-ter-

Underfull \hbox (badness 1033) in paragraph at lines 25224--25230
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where

[1835]
Underfull \hbox (badness 10000) in paragraph at lines 25245--25248
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = 
runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] =

[1836]
[1837]
[1838]
[1839]
[1840]
[1841]
[1842]
[1843]
[1844]
Underfull \hbox (badness 2165) in paragraph at lines 25820--25825
[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T
1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,

[1845]
[1846]
[1847]
[1848]
Underfull \hbox (badness 1867) in paragraph at lines 26030--26032
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

Underfull \hbox (badness 10000) in paragraph at lines 26046--26050
[]\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb
ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <-

[1849]
[1850]
[1851]
[1852]
[1853]
[1854]
[1855]
[1856]
[1857]
[1858]
[1859]
[1860]
[1861]
[1862]
[1863]
[1864]
[1865]
[1866]
[1867]
[1868]
[1869]
[1870]
[1871]
[1872]
[1873]
Underfull \vbox (badness 10000) has occurred while \output is active
[1874]
[1875]
Underfull \hbox (badness 3514) in paragraph at lines 27698--27703
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1876]
[1877]
[1878]
[1879]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 27932--27932
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 

Underfull \hbox (badness 3514) in paragraph at lines 27968--27974
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1880]
Overfull \hbox (14.22568pt too wide) in paragraph at lines 28028--28028
 []            \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=
1e-11, nDcentral=TRUE), trace=TRUE)[] 

[1881]
[1882]
[1883]
[1884]
Underfull \hbox (badness 3514) in paragraph at lines 28201--28206
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1885]
Underfull \hbox (badness 3514) in paragraph at lines 28288--28293
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1886]
Underfull \hbox (badness 3514) in paragraph at lines 28353--28358
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1887]
[1888]
Underfull \hbox (badness 3514) in paragraph at lines 28447--28452
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1889]
[1890]
Underfull \hbox (badness 6691) in paragraph at lines 28539--28544
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[]
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1891]
[1892]
[1893]
[1894]
[1895]
[1896]
[1897]
[1898]
Underfull \hbox (badness 4024) in paragraph at lines 29026--29029
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which

[1899]
[1900]
[1901]
[1902]
[1903]
[1904]
[1905]
[1906]
[1907]
[1908]
Underfull \hbox (badness 5431) in paragraph at lines 29629--29631
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if

[1909]
[1910]
[1911]
Underfull \hbox (badness 5431) in paragraph at lines 29839--29842
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if

[1912]
[1913]
[1914]
[1915]
[1916]
[1917]
Underfull \hbox (badness 1337) in paragraph at lines 30154--30158
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1918]
[1919]
Underfull \hbox (badness 1127) in paragraph at lines 30291--30294
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate
 only for

[1920]
[1921]
[1922]
Underfull \hbox (badness 1616) in paragraph at lines 30497--30500
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when

[1923]
[1924]
[1925]
[1926]
[1927]
[1928]
[1929]
[1930]
[1931]
[1932]
[1933]
[1934]
[1935]
[1936]
[1937]
[1938]
[1939]
[1940]
[1941]
[1942]
[1943]
Underfull \hbox (badness 3557) in paragraph at lines 31724--31728
[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non-
[]\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re
ct []\T1/zi4/m/sl/10 interval =

[1944]
[1945]
[1946]
Underfull \vbox (badness 10000) has occurred while \output is active
[1947]
[1948]
[1949]
Underfull \hbox (badness 1337) in paragraph at lines 32091--32095
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1950]
[1951]
[1952]
[1953]
[1954]
[1955]
[1956]
[1957]
[1958]
Underfull \hbox (badness 1337) in paragraph at lines 32619--32623
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1959]
[1960]
[1961]
Overfull \hbox (0.71648pt too wide) in paragraph at lines 32827--32827
 []\T1/zi4/m/n/9 wilcox.test( 4:2,      3:1,     paired=TRUE) # Warning:  canno
t compute exact p-value with ties[] 

[1962]
[1963]
[1964]
Overfull \hbox (19.71954pt too wide) in paragraph at lines 32988--32988
 []      \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep
s = getOption("ts.eps"), ...)[] 

[1965]
[1966]
[1967]
[1968]
[1969]) (./stats4-pkg.tex
[1970]
Chapter 11.

[1971]
[1972]
[1973]
Underfull \vbox (badness 10000) has occurred while \output is active
[1974]
Underfull \vbox (badness 10000) has occurred while \output is active
[1975]
[1976]
[1977]
[1978]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas
h.methods}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                  
[1979]
[1980]
[1981]) (./tcltk-pkg.tex
[1982]
Chapter 12.

[1983]
[1984]
[1985]
[1986]
[1987]
[1988]
[1989]
Underfull \vbox (badness 10000) has occurred while \output is active
[1990]
Underfull \vbox (badness 10000) has occurred while \output is active
[1991]
Underfull \hbox (badness 1546) in paragraph at lines 672--679
[]\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-
ing any Tk or Tcl com-mand by sim-ply run-ning

[1992]
[1993]
[1994]
[1995]
[1996]
Underfull \vbox (badness 10000) has occurred while \output is active
[1997]
[1998]
[1999]
[2000]
[2001]
[2002]
[2003]
[2004]) (./tools-pkg.tex
Chapter 13.

[2005]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.


[2006]
Underfull \hbox (badness 3039) in paragraph at lines 167--170
[]\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil
l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas

[2007]
[2008]
Underfull \hbox (badness 1308) in paragraph at lines 288--301
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

Underfull \hbox (badness 4967) in paragraph at lines 288--301
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b
ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 288--301
[]\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format
InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 
, []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 288--301
[]\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi
s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and

[2009]
[2010]
Underfull \hbox (badness 3039) in paragraph at lines 392--394
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi
ne to use. Over-rides any

[2011]
Underfull \hbox (badness 1142) in paragraph at lines 464--468
\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory

[2012]
[2013]
[2014]
[2015]
[2016]
[2017]
[2018] [2019]
[2020]
[2021]
[2022]
[2023]
[2024]
Underfull \hbox (badness 1014) in paragraph at lines 1220--1222
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

Underfull \hbox (badness 7238) in paragraph at lines 1226--1228
[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous

[2025]
Underfull \hbox (badness 10000) in paragraph at lines 1263--1266
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1263--1266
[]\T1/zi4/m/sl/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and 
[]\T1/zi4/m/sl/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,

[2026]
[2027]
[2028]
[2029]
[2030]
[2031]
Underfull \hbox (badness 10000) in paragraph at lines 1637--1640
[]\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/sl/10 CRAN_aliases_db[]\T1/ptm
/m/n/10 , []\T1/zi4/m/sl/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10
 CRAN_current_db []\T1/ptm/m/n/10 and

[2032]
[2033]
Underfull \hbox (badness 4096) in paragraph at lines 1756--1764
\T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

Underfull \hbox (badness 1082) in paragraph at lines 1766--1768
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 for all known trees (see

[2034]
[2035]
[2036]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1967 \aliasA{GSC}{find\_gs\_cmd}{GSC}
                                       
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC
MD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1968 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                  
[2037]
[2038]
[2039]
[2040]
[2041]
[2042]
[2043]
[2044]
Underfull \hbox (badness 3386) in paragraph at lines 2442--2445
[]\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/sl/10 as.Rconcordance []\T1
/ptm/m/n/10 searches for strings match-ing the pat-tern of

[2045]
[2046]
Underfull \hbox (badness 4096) in paragraph at lines 2582--2590
\T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

[2047]
[2048]
[2049]
[2050]
[2051]
[2052]
[2053]
[2054]
[2055]
[2056]
[2057]
[2058]
[2059]
[2060]
[2061]
Underfull \hbox (badness 1424) in paragraph at lines 3516--3518
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
-tor of links, as re-turned by

[2062]
[2063]
[2064]
[2065]
[2066]
[2067]
[2068]
[2069]
[2070]
[2071]
[2072]
Underfull \hbox (badness 10000) in paragraph at lines 4232--4234
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,

[2073]
[2074]
[2075]
Underfull \hbox (badness 10000) in paragraph at lines 4388--4391
[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/sl/10 texi2dvi []\T1/ptm/m/n/10 
5.0 and later; []\T1/zi4/m/sl/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-
tion

[2076]
[2077]
[2078]
[2079]
[2080]
Underfull \hbox (badness 1796) in paragraph at lines 4745--4750
[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/sl/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/sl/10 type =
=

[2081]
[2082]
Underfull \hbox (badness 1838) in paragraph at lines 4831--4837
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

Underfull \hbox (badness 10000) in paragraph at lines 4831--4837
\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file

[2083]
[2084]
[2085]
[2086]
Underfull \hbox (badness 2197) in paragraph at lines 5112--5122
[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/sl/10 available.packages[][][][]\T1/ptm/m/n/10 :

[2087]
Underfull \hbox (badness 1571) in paragraph at lines 5178--5182
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by

[2088]
[2089]
[2090]
[2091]) (./utils-pkg.tex
[2092]
Chapter 14.

[2093]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/sl/10 insertions[]\T1/ptm/m/n/10 ',

[2094]
[2095]
[2096]
[2097]
[2098]
[2099]
[2100]
[2101]
[2102]
[2103]
Underfull \hbox (badness 10000) in paragraph at lines 728--734
[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/sl/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/sl/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 728--734
[]\T1/zi4/m/sl/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10
 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the

[2104]
[2105]
[2106]
Underfull \hbox (badness 3861) in paragraph at lines 934--939
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/sl/10 
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,

[2107]
[2108]
[2109]
Underfull \hbox (badness 10000) in paragraph at lines 1139--1141
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing

[2110]
[2111]
[2112]
Underfull \vbox (badness 10000) has occurred while \output is active
[2113]
[2114]
[2115]
[2116]
[2117]
Underfull \hbox (badness 1371) in paragraph at lines 1666--1668
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to

[2118]
[2119]
[2120]
[2121]
[2122]
[2123]
[2124]
[2125]
[2126]
[2127]
[2128]
[2129]
Underfull \hbox (badness 2057) in paragraph at lines 2386--2388
[]\T1/ptm/m/n/10 None for []\T1/zi4/m/sl/10 chooseCRANmirror()[]\T1/ptm/m/n/10 
, this func-tion is in-voked for its side ef-fect of up-dat-ing

[2130]
Underfull \hbox (badness 2150) in paragraph at lines 2461--2468
[]\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/sl/10 citation() []\T1
/ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print

Underfull \hbox (badness 1400) in paragraph at lines 2461--2468
\T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I
f a pack-age has more

[2131]
[2132]
[2133]
Underfull \vbox (badness 3803) has occurred while \output is active
[2134]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2738 ... the Clipboard in MS Windows}{clipboard}
                                                  
[2135]
[2136]
[2137]
[2138]
[2139]
[2140]
[2141]
[2142]
[2143]
[2144]
[2145]
[2146]
[2147]
[2148]
[2149]
[2150]
[2151]
[2152]
[2153]
[2154]
[2155]
Underfull \hbox (badness 6842) in paragraph at lines 4048--4053
[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/sl/10 "libcurl" []\T1/ptm/m/n/1
0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use


[2156]
Underfull \hbox (badness 1430) in paragraph at lines 4111--4115
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the []\T1/zi4/m/sl/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the

[2157]
Underfull \hbox (badness 1184) in paragraph at lines 4182--4198
[]\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/sl/10 method = "libcurl"[]\T1/ptm
/m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS

Underfull \hbox (badness 1019) in paragraph at lines 4182--4198
\T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/sl/10 "Schannel"[]\T1/ptm/m/n/10 '. If
 it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari-

Underfull \hbox (badness 1668) in paragraph at lines 4182--4198
\T1/ptm/m/n/10 able []\T1/zi4/m/sl/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s
et to a path to a cer-tifi-cate bun-dle file, usu-ally named

[2158]
[2159]
Underfull \hbox (badness 10000) in paragraph at lines 4332--4334
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/sl/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and

[2160]
[2161]
[2162]
[2163]
[2164]
[2165]
[2166]
[2167]
[2168]
[2169]
[2170]
[2171]
[2172]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5111 ...mat Unordered and Ordered Lists}{format}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5111 ...mat Unordered and Ordered Lists}{format}
                                                  
[2173]
[2174]
[2175]
[2176]
[2177]
[2178]
[2179]
[2180]
Underfull \hbox (badness 1622) in paragraph at lines 5634--5638
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the

[2181]
[2182]
[2183]
[2184]
[2185]
[2186]
Underfull \hbox (badness 1448) in paragraph at lines 6019--6024
[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing

[2187]
[2188]
[2189]
[2190]
[2191]
[2192]
[2193]
[2194]
Underfull \hbox (badness 1371) in paragraph at lines 6567--6569
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to

[2195]
[2196]
Underfull \hbox (badness 1502) in paragraph at lines 6656--6662
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

Underfull \hbox (badness 2103) in paragraph at lines 6656--6662
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file

[2197]
[2198]
Underfull \hbox (badness 10000) in paragraph at lines 6833--6842
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,

Underfull \hbox (badness 3354) in paragraph at lines 6833--6842
\T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/sl/10 /html/packages.html\T1
/ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/sl/10 make.packages.html
[][][]()[]\T1/ptm/m/n/10 .

[2199]
Underfull \hbox (badness 2150) in paragraph at lines 6895--6898
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See

[2200]
[2201]
Underfull \hbox (badness 3118) in paragraph at lines 7034--7036
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for

[2202]
[2203]
[2204]
Underfull \hbox (badness 1325) in paragraph at lines 7213--7217
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/sl/10 available.pack
ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able

[2205]
Underfull \hbox (badness 1424) in paragraph at lines 7306--7309
[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to

[2206]
Underfull \hbox (badness 3219) in paragraph at lines 7378--7385
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/s
l/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-

Underfull \hbox (badness 5175) in paragraph at lines 7378--7385
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

Underfull \hbox (badness 1342) in paragraph at lines 7378--7385
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by

Underfull \hbox (badness 1596) in paragraph at lines 7378--7385
[][][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")[]
\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 type = "both" []\T1/ptm/m/n/10 will be silen
tly

Underfull \hbox (badness 2932) in paragraph at lines 7386--7389
[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/sl/10 type = "source" []\T1/p
tm/m/n/10 al-ways works pro-vided the pack-age con-tains no

[2207]
[2208]
Underfull \hbox (badness 1024) in paragraph at lines 7515--7518
[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/sl/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 , ] []\T1/
ptm/m/n/10 will

Underfull \hbox (badness 10000) in paragraph at lines 7548--7553
[][][]\T1/zi4/m/sl/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s
l/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,

[2209]
Underfull \hbox (badness 5133) in paragraph at lines 7607--7611
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each
 pack-age's

[2210]
[2211]
[2212]
[2213]
[2214]
[2215]
[2216]
[2217]
[2218]
[2219]
[2220]
Underfull \hbox (badness 10000) in paragraph at lines 8271--8273
[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/sl/10 methods(..)[]\T1/pt
m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class

[2221]
[2222]
[2223]
[2224]
[2225]
[2226]
[2227]
[2228] [2229]
[2230]
[2231]
[2232]
[2233]
Underfull \hbox (badness 2310) in paragraph at lines 9058--9063
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,

[2234]
[2235]
[2236]
[2237]
[2238]
[2239]
[2240]
[2241]
[2242]
Underfull \hbox (badness 1248) in paragraph at lines 9629--9633
[]\T1/zi4/m/sl/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the

[2243]
Underfull \hbox (badness 1789) in paragraph at lines 9707--9709
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the

[2244]
[2245]
[2246]
[2247]
Underfull \hbox (badness 2600) in paragraph at lines 9931--9934
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic;
 de-faults to

[2248]
[2249]
[2250]
[2251]
[2252]
[2253]
[2254]
[2255]
[2256]
Underfull \hbox (badness 1097) in paragraph at lines 10568--10571
[]\T1/ptm/m/n/10 The name []\T1/zi4/m/sl/10 "clipboard" []\T1/ptm/m/n/10 may al
so be used on Win-dows, in which case

[2257]
[2258]
Underfull \hbox (badness 3000) in paragraph at lines 10704--10709
[][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
sl/10 read.table[][][][]\T1/ptm/m/n/10 ;

[2259]
[2260]
[2261]
[2262]
[2263]
[2264]
[2265]
[2266]
[2267]
Underfull \hbox (badness 2134) in paragraph at lines 11299--11304
[][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
sl/10 write.table[][][][]\T1/ptm/m/n/10 ;

[2268]
Underfull \hbox (badness 10000) in paragraph at lines 11355--11360
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for


Underfull \hbox (badness 10000) in paragraph at lines 11355--11360
[]\T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 HKEY_C
LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/
10 ,

[2269]
[2270]
[2271]
[2272]
[2273]
[2274]
[2275]
[2276]
Underfull \hbox (badness 1824) in paragraph at lines 11853--11857
\T1/zi4/m/sl/10 / / en . wikipedia . org / w / index . php ? title = Roman _ nu
merals & oldid = 1188781837$[][]\T1/ptm/m/n/10 . Ac-cessed

[2277]
[2278]
[2279]
[2280]
[2281]
[2282]
[2283]
Underfull \hbox (badness 4060) in paragraph at lines 12299--12302
[]\T1/ptm/m/n/10 If `[]\T1/zi4/m/sl/10 --default-packages[]\T1/ptm/m/n/10 ' is 
not used, then []\T1/zi4/m/sl/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-
ment vari-able

Overfull \hbox (18.77168pt too wide) in paragraph at lines 12322--12322
 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 

[2284]
[2285]
[2286]
[2287]
Underfull \hbox (badness 2150) in paragraph at lines 12577--12579
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac
s / manual /

[2288]
[2289]
[2290]
[2291]
Underfull \hbox (badness 10000) in paragraph at lines 12797--12801
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/sl/10 stylepath []\T1/ptm/m/n/10 
is now taken from the en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 12830--12836
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a

[2292]
Underfull \hbox (badness 2762) in paragraph at lines 12845--12851
\T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin
ce 2018). Ei-ther set

[2293]
[2294]
Underfull \hbox (badness 1009) in paragraph at lines 13020--13032
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If

Underfull \hbox (badness 4779) in paragraph at lines 13060--13062
[]\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI ([]\T1/zi4/m/sl/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do
ws and

[2295]
Underfull \hbox (badness 1077) in paragraph at lines 13090--13097
\T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p
er-sonal' di-rec-tory, oth-er-wise to

[2296]
[2297]
[2298]
[2299]
[2300]
[2301]
Underfull \hbox (badness 3780) in paragraph at lines 13515--13521
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\
T1/zi4/m/sl/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via

[2302]
Underfull \hbox (badness 2635) in paragraph at lines 13533--13536
[]\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/sl/10 CRAN[]\T1/ptm/m/n/10 ' is treate
d spe-cially: the value is taken from the cur-rent set-ting of

[2303]
[2304]
[2305]
Underfull \hbox (badness 2302) in paragraph at lines 13743--13745
[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call

[2306]
[2307]
[2308]
[2309]
[2310]
Underfull \hbox (badness 4441) in paragraph at lines 14042--14047
[]\T1/ptm/m/n/10 logical; if []\T1/zi4/m/sl/10 TRUE []\T1/ptm/m/n/10 (de-fault)
, [][][]\T1/zi4/m/sl/10 deparse[][][](control = \T1/ptm/m/sl/10 control\T1/zi4/
m/sl/10 ) []\T1/ptm/m/n/10 will not have

Underfull \hbox (badness 5970) in paragraph at lines 14051--14054
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive

[2311]
[2312]
[2313]
[2314]
[2315]
[2316]
[2317]
Underfull \hbox (badness 2932) in paragraph at lines 14482--14489
[]\T1/ptm/m/n/10 If []\T1/zi4/m/sl/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa
ult) then the avail-able syn-tax ob-jects are con-sulted in turn,

Underfull \hbox (badness 1688) in paragraph at lines 14482--14489
\T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/sl/10 extension []\T1/ptm/m/n
/10 com-po-nent matches (as a reg-exp) the file name. Ob-

[2318]
[2319]
[2320]
[2321]
Underfull \hbox (badness 6510) in paragraph at lines 14794--14798
[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 is set 
to the com-mand []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men
t vari-able

[2322]
Underfull \hbox (badness 10000) in paragraph at lines 14801--14804
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / pubs . opengroup 
. org /

Underfull \hbox (badness 2245) in paragraph at lines 14801--14804
\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX

[2323]
[2324]
[2325]
[2326]
[2327]
[2328]
[2329]
[2330]
[2331]
[2332]
Underfull \hbox (badness 10000) in paragraph at lines 15474--15479
[]\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/sl/10 destdir []\T1/ptm/m/n/10 a
nd []\T1/zi4/m/sl/10 dependencies []\T1/ptm/m/n/10 to be passed to

Underfull \hbox (badness 3861) in paragraph at lines 15474--15479
[][][]\T1/zi4/m/sl/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 max_repo_cache_age [
]\T1/ptm/m/n/10 and

Underfull \hbox (badness 1052) in paragraph at lines 15480--15482
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See

Underfull \hbox (badness 10000) in paragraph at lines 15539--15542
[][][]\T1/zi4/m/sl/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/
sl/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download
.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][
][]\T1/ptm/m/n/10 ,

[2333]
[2334]
[2335]
[2336]
[2337]
[2338]
[2339]
[2340]
[2341]
[2342]
[2343]
[2344]
[2345]
[2346]
[2347]
[2348]) (./refman.ind

[2349]

[2350]

[2351]

[2352]

[2353]

[2354]

[2355]

[2356]

[2357]

[2358]

[2359]

[2360]

[2361]

[2362]

[2363]

[2364]

[2365]

[2366]

[2367]

[2368]

[2369]

[2370]

[2371]

[2372]

[2373]

[2374]

[2375]

[2376]

[2377]

[2378]

[2379]

[2380]

[2381]

[2382]

[2383]

[2384]

[2385]

[2386]

[2387]

[2388]

[2389]

[2390]

[2391]

[2392]

[2393]

[2394]

[2395]

[2396]

[2397]

[2398]

[2399]

[2400]

[2401]

[2402]

[2403]

[2404]

[2405]

[2406]

Overfull \hbox (33.3567pt too wide) in paragraph at lines 10031--10033
[]\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , 


[2407]

[2408]

[2409]

[2410]

[2411]

[2412]

Overfull \hbox (20.8567pt too wide) in paragraph at lines 11421--11423
[]\T1/zi4/m/it/10 R_AVAILABLE_PACKAGES_CACHE_CONTROL_MAX_AGE 

[2413]

[2414]

[2415]

[2416]

[2417]

[2418]

[2419]

[2420]

[2421]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 13281--13283
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends 

Overfull \hbox (5.8567pt too wide) in paragraph at lines 13283--13285
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results 


Overfull \hbox (5.8567pt too wide) in paragraph at lines 13285--13287
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings 

[2422]

[2423]

[2424]

[2425]

[2426]

[2427]

[2428]

[2429]

[2430]

[2431]) (./refman.aux)

LaTeX Font Warning: Some font shapes were not available, defaults substituted.


Package rerunfilecheck Warning: File `refman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.

 )
(see the transcript file for additional information)
pdfTeX warning (dest): name{Rfn.write.matrix} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.knitr} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.restore} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.setup} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.ncols} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.mathjaxr} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do
es not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lmrob} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rlm} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.nlsList} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no
t exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rBind} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cBind} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no
t exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.roundX} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.base.Rdash.deprecated} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, 
replaced by a fixed one

 </tmp/texfonts/pk/ljfour/jknappen/ec/tctt1000.600pk> </tmp/texfonts/pk/ljfour/
jknappen/ec/tctt0900.600pk></usr/share/texlive/texmf-dist/fonts/type1/public/in
consolata/Inconsolata-zi4b.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/inconsolata/Inconsolata-zi4r.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cmextra/cmbsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmib10.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw
/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8
a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi8a.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/tex
mf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/urw/times/utmri8a.pfb>
Output written on refman.pdf (2464 pages, 6693934 bytes).
Transcript written on refman.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./refman.tex
LaTeX2e <2024-11-01> patch level 2
L3 programming layer <2025-01-18>
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2024/06/29 v1.4n Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty)
(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/mathrsfs.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty
`inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex)))))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty
(/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
(/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(/usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
(/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))
(/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
(/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))))
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
Writing index file refman.idx
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
(./refman.aux)
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(./refman.out) (./refman.out)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf-
dist/fonts/enc/dvips/base/8r.enc}] (./refman.toc
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/ursfs.fd)
[1{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc}]
[2]
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[10]
[11]
[12]
[13]
[14]
[15]
[16]
[17]
[18]
[19]
[20]
[21]
[22]
[23]
[24]
[25]
[26]
[27]
[28]
[29]
[30])
[31]
[32] (./base-pkg.tex
Chapter 1.

[1]
[2]
Underfull \hbox (badness 6252) in paragraph at lines 149--157
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [
]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It

Underfull \hbox (badness 10000) in paragraph at lines 149--157
\T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T
1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base

Underfull \hbox (badness 10000) in paragraph at lines 149--157
[]\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base

Underfull \hbox (badness 10000) in paragraph at lines 149--157
\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z
i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As

Underfull \hbox (badness 4995) in paragraph at lines 149--157
[]\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by []
\T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 ,

[3]
[4]
[5]
Underfull \hbox (badness 1178) in paragraph at lines 337--340
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/
n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues

[6]
[7]
[8]
[9]
Underfull \hbox (badness 2556) in paragraph at lines 572--578
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ',

[10]
[11]
[12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[13{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}]
[14]
[15]
[16]
[17]
[18]
[19]
[20]
[21]
[22]
[23]
[24]
[25]
[26]
[27]
[28]
[29]
[30]
Underfull \vbox (badness 3803) has occurred while \output is active
[31]
[32]
[33]
[34]
[35]
[36]
Overfull \hbox (26.27782pt too wide) in paragraph at lines 2261--2261
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 

[37]
[38]
[39]
[40]
[41]
[42]
[43]
[44]
[45]
[46]
Underfull \hbox (badness 1721) in paragraph at lines 2926--2930
[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p
tm/m/n/10 ; fur-ther,

[47]
[48]
[49]
[50]
[51]
[52]
[53]
Underfull \hbox (badness 2538) in paragraph at lines 3404--3407
[]\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[]
[][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE,

[54]
[55]
[56]
[57]
[58]
[59]
[60]
[61]
[62]
[63]
[64]
[65]
[66]
Underfull \hbox (badness 10000) in paragraph at lines 4200--4202
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting

[67]
[68]
[69]
[70]
[71]
[72]
[73]
[74]
[75]
[76]
[77]
[78]
[79]
[80]
[81]
[82]
[83]
[84]
[85]
[86]
[87]
Underfull \hbox (badness 2521) in paragraph at lines 5551--5553
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by

[88]
[89]
[90]
[91]
[92]
[93]
[94]
[95]
[96]
[97]
[98]
[99]
[100]
[101]
[102]
[103]
[104]
[105]
[106]
[107]
Overfull \hbox (5.27168pt too wide) in paragraph at lines 6834--6834
 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 

[108]
[109]
[110]
[111]
[112]
[113]
[114]
[115]
[116]
[117]
[118]
[119]
Underfull \hbox (badness 1303) in paragraph at lines 7730--7737
[]\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n
/10 only. This reads the

[120]
Underfull \hbox (badness 2261) in paragraph at lines 7741--7746
\T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1
/zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen
et . net / ~conrad / software /

[121]
[122]
Underfull \vbox (badness 10000) has occurred while \output is active
[123]
[124]
[125]
[126]
[127]
[128]
[129]
[130]
[131]
Underfull \hbox (badness 2096) in paragraph at lines 8474--8478
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .

[132]
[133]
Underfull \hbox (badness 2351) in paragraph at lines 8589--8592
[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,

[134]
[135]
[136]
[137]
[138]
Underfull \hbox (badness 4479) in paragraph at lines 8906--8917
[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),

[139]
[140]
[141]
[142]
[143]
[144]
Underfull \hbox (badness 1629) in paragraph at lines 9334--9346
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

Underfull \hbox (badness 2875) in paragraph at lines 9334--9346
[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31

[145]
[146]
[147]
[148]
[149]
[150]
[151]
[152]
[153]
[154]
[155]
[156]
[157]
Underfull \hbox (badness 1178) in paragraph at lines 10200--10204
[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
 atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names 
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-

[158]
[159]
[160]
[161]
[162]
[163]
[164]
[165]
[166]
[167]
[168]
[169]
[170]
[171]
[172]
[173]
[174]
[175]
[176]
[177]
[178]
[179]
[180]
[181]
[182]
[183]
[184]
[185]
[186]
[187]
[188]
[189]
[190]
[191]
[192]
[193]
Underfull \hbox (badness 2744) in paragraph at lines 12540--12542
[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see

[194]
[195]
[196]
[197]
[198]
[199]
[200]
[201]
Underfull \vbox (badness 10000) has occurred while \output is active
[202]
[203]
[204]
[205]
[206]
[207]
[208]
[209]
[210]
[211]
[212]
[213]
[214]
[215]
[216]
[217]
[218]
[219]
[220]
[221]
[222]
[223]
[224]
[225]
[226]
Underfull \hbox (badness 2253) in paragraph at lines 14746--14748
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see

Underfull \hbox (badness 1490) in paragraph at lines 14781--14784
[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the

[227]
Underfull \hbox (badness 1565) in paragraph at lines 14863--14867
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and

[228]
Underfull \hbox (badness 4927) in paragraph at lines 14914--14916
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/zi4/m/n/10 fsep =

[229]
[230]
[231]
Underfull \hbox (badness 1466) in paragraph at lines 15065--15068
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and

[232]
Underfull \hbox (badness 10000) in paragraph at lines 15196--15200
[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 15207--15210
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /

[233]
[234]
[235]
[236]
[237]
Underfull \hbox (badness 3965) in paragraph at lines 15504--15508
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,

[238]
[239]
[240]
[241]
[242]
[243]
[244]
[245]
Underfull \hbox (badness 5260) in paragraph at lines 16006--16006
[]\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/
ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma
ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 ,

[246]
[247]
[248]
[249]
Underfull \hbox (badness 4429) in paragraph at lines 16296--16299
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for

[250]
[251]
Underfull \hbox (badness 10000) in paragraph at lines 16403--16405
[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/zi4/m/n/10 .format.zeros(*,

[252]
Underfull \hbox (badness 2035) in paragraph at lines 16476--16480
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 
R \T1/ptm/m/n/10 3.2.0: for use within

[253]
Underfull \vbox (badness 10000) has occurred while \output is active
[254]
[255]
[256]
[257]
[258]
[259]
[260]
[261]
[262]
Underfull \hbox (badness 2452) in paragraph at lines 17099--17103
[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 17099--17103
\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and

[263]
[264]
[265]
Underfull \hbox (badness 1092) in paragraph at lines 17273--17278
[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing

[266]
[267]
[268]
Underfull \hbox (badness 6741) in paragraph at lines 17526--17530
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,

[269]
[270]
[271]
[272]
[273]
[274]
[275]
[276]
[277]
[278]
[279]
Underfull \vbox (badness 3803) has occurred while \output is active
[280]
Underfull \vbox (badness 10000) has occurred while \output is active
[281]
[282]
[283]
[284]
[285]
[286]
[287]
[288]
[289]
[290]
Underfull \hbox (badness 1769) in paragraph at lines 18999--19002
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor

[291]
[292]
[293]
[294]
[295]
Underfull \hbox (badness 10000) in paragraph at lines 19308--19310
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /

Underfull \hbox (badness 2088) in paragraph at lines 19314--19323
[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /

[296]
[297]
[298]
[299]
[300]
[301]
[302]
[303]
[304]
[305]
Underfull \hbox (badness 1442) in paragraph at lines 19922--19924
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see

[306]
Underfull \hbox (badness 2452) in paragraph at lines 20018--20044
[][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 
as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt
m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 5726) in paragraph at lines 20018--20044
[][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en
vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma
trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][]

[307]
[308]
[309]
[310]
[311]
[312]
Underfull \hbox (badness 1248) in paragraph at lines 20416--20419
[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,

[313]
[314]
[315]
[316]
[317]
Underfull \hbox (badness 4739) in paragraph at lines 20683--20685
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see

[318]
[319]
[320]
[321]
[322]
Underfull \vbox (badness 10000) has occurred while \output is active
[323]
[324]
[325]
[326]
[327]
[328]
[329]
[330]
[331]
[332]
[333]
[334]
[335]
[336]
Underfull \hbox (badness 2469) in paragraph at lines 21851--21856
[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and

[337]
Underfull \hbox (badness 1675) in paragraph at lines 21938--21947
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3189) in paragraph at lines 21948--21961
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
 or empty, the

[338]
Underfull \hbox (badness 10000) in paragraph at lines 21996--21999
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-

Underfull \hbox (badness 4752) in paragraph at lines 21996--21999
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may 
be opened by

[339]
[340]
Underfull \hbox (badness 1014) in paragraph at lines 22130--22135
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if

[341]
[342]
[343]
[344]
[345]
[346]
[347]
[348]
[349]
[350]
[351]
[352]
[353]
Underfull \hbox (badness 1264) in paragraph at lines 22977--22985
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:

Underfull \hbox (badness 4441) in paragraph at lines 23012--23015
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,

[354]
[355]
[356]
[357]
[358]
[359]
[360]
[361]
[362]
[363]
[364]
[365]
[366]
Underfull \hbox (badness 5231) in paragraph at lines 23830--23832
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==

[367]
[368]
[369]
[370]
[371]
[372]
[373]
[374]
[375]
[376]
[377]
[378]
[379]
[380]
[381]
[382]
[383]
Underfull \hbox (badness 6380) in paragraph at lines 24940--24946
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress
ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-

Underfull \hbox (badness 1472) in paragraph at lines 24940--24946
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ 
_ Utils$[][]

[384]
[385]
[386]
[387]
[388]
[389]
[390]
[391]
[392]
Underfull \hbox (badness 2790) in paragraph at lines 25453--25456
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 25453--25456
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by

[393]
[394]
[395]
[396]
[397]
Underfull \hbox (badness 1194) in paragraph at lines 25781--25784
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls

[398]
[399]
[400]
Underfull \hbox (badness 2368) in paragraph at lines 25988--25994
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,

[401]
[402]
[403]
[404]
[405]
[406]
Underfull \hbox (badness 10000) in paragraph at lines 26378--26381
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by

[407]
[408]
[409]
[410]
[411]
[412]
[413]
[414]
[415]
[416]
Underfull \hbox (badness 10000) in paragraph at lines 27006--27008
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%

[417]
[418]
[419]
[420]
[421]
[422]
[423]
Underfull \hbox (badness 2443) in paragraph at lines 27497--27505
\T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob
-jects. For

[424]
[425]
[426]
[427]
[428]
[429]
[430]
Underfull \hbox (badness 1881) in paragraph at lines 27927--27930
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 27952--27954
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see


[431]
[432]
Underfull \hbox (badness 2142) in paragraph at lines 28093--28097
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 28150--28155
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

[433]
[434]
[435]
[436]
Underfull \hbox (badness 10000) in paragraph at lines 28446--28452
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 28446--28452
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 28446--28452
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 5878) in paragraph at lines 28459--28462
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p
tm/m/n/10 and

Underfull \hbox (badness 2689) in paragraph at lines 28485--28487
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 28531--28536
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly

[437]
Underfull \hbox (badness 2529) in paragraph at lines 28537--28548
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 28537--28548
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and

Underfull \hbox (badness 7203) in paragraph at lines 28549--28552
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and

[438]
[439]
[440]
[441]
[442]
Underfull \vbox (badness 10000) has occurred while \output is active
[443]
Underfull \hbox (badness 10000) in paragraph at lines 28967--28971
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],

[444]
[445]
Underfull \hbox (badness 10000) in paragraph at lines 29114--29117
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,

[446]
Underfull \hbox (badness 7925) in paragraph at lines 29195--29199
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to

Underfull \hbox (badness 1253) in paragraph at lines 29195--29199
[][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 ,
 which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) 
and [][][]\T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 2521) in paragraph at lines 29200--29209
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s,

[447]
[448]
[449]
[450]
[451]
[452]
[453]
[454]
[455]
[456]
[457]
[458]
[459]
[460]
[461]
[462]
Underfull \hbox (badness 2726) in paragraph at lines 30214--30217
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see

[463]
[464]
[465]
[466]
[467]
[468]
[469]
[470]
[471]
[472]
[473]
[474]
[475]
[476]
[477]
[478]
[479]
[480]
[481]
Underfull \vbox (badness 3803) has occurred while \output is active
[482]
[483]
[484]
[485]
[486]
[487]
[488]
[489]
[490]
Underfull \hbox (badness 1533) in paragraph at lines 32024--32027
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the

[491]
[492]
[493]
Underfull \hbox (badness 1163) in paragraph at lines 32195--32206
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in

[494]
[495]
[496]
[497]
[498]
[499]
[500]
Underfull \vbox (badness 3803) has occurred while \output is active
[501]
[502]
Underfull \hbox (badness 6300) in paragraph at lines 32741--32743
[]\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr
it-ing R Ex-ten-sions' man-ual:

[503]
[504]
[505]
[506]
[507]
[508]
[509]
[510]
[511]
[512]
[513]
[514]
[515]
[516]
[517]
[518]
[519]
Underfull \hbox (badness 10000) in paragraph at lines 33864--33868
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 33864--33868
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions 
of the matches are also re-turned by name.

Underfull \hbox (badness 3557) in paragraph at lines 33885--33887
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /

Underfull \hbox (badness 1122) in paragraph at lines 33888--33892
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /

[520]
[521]
Underfull \vbox (badness 10000) has occurred while \output is active
[522]
[523]
[524]
[525]
[526]
[527]
[528]
[529]
Underfull \hbox (badness 1655) in paragraph at lines 34490--34492
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for

[530]
[531]
[532]
[533]
[534]
[535]
[536]
[537]
[538]
[539]
[540]
[541]
[542]
[543]
[544]
[545]
[546]
[547]
[548]
Underfull \hbox (badness 2261) in paragraph at lines 35693--35698
[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if

[549]
[550]
[551]
[552]
[553]
[554]
[555]
[556]
[557]
[558]
[559]
[560]
[561]
[562]
[563]
[564]
Underfull \hbox (badness 3668) in paragraph at lines 36728--36732
[]\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in-
te-ger con-nec-tion de-scrip-tors for use with

[565]
Underfull \hbox (badness 10000) in paragraph at lines 36819--36830
\T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par
sing-[]c-[]command-[]line-[]arguments ?

[566]
[567]
[568]
[569]
[570]
[571]
[572]
[573]
[574]
[575]
[576]
[577]
[578]
[579]
[580]
[581]
[582]
[583]
[584]
[585]
[586]
[587]
[588]
[589]
[590]
Underfull \hbox (badness 10000) in paragraph at lines 38451--38453
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for

[591]
[592]
[593]
[594]
[595]
[596]
[597]
Underfull \hbox (badness 2913) in paragraph at lines 38869--38873
\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by

[598]
[599]
[600]
Underfull \hbox (badness 1072) in paragraph at lines 39115--39119
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

[601]
Underfull \hbox (badness 10000) in paragraph at lines 39120--39124
[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 39160--39166
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 39160--39166
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 39160--39166
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3009) in paragraph at lines 39175--39182
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

Underfull \hbox (badness 1038) in paragraph at lines 39175--39182
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 39175--39182
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 39175--39182
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from

[602]
[603]
[604]
[605]
Underfull \hbox (badness 2644) in paragraph at lines 39410--39414
[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an


[606]
[607]
[608]
Underfull \hbox (badness 1389) in paragraph at lines 39573--39580
[]\T1/ptm/m/n/10 a char-ac-ter string. The de-fault for the []\T1/zi4/m/n/10 fo
rmat []\T1/ptm/m/n/10 meth-ods is []\T1/zi4/m/n/10 "%Y-%m-%d

[609]
[610]
[611]
[612]
[613]
[614]
[615]
[616]
[617]
[618]
[619]
[620]
[621]
[622]
[623]
[624]
[625]
[626]
[627]
[628]
[629]
Underfull \hbox (badness 1158) in paragraph at lines 40939--40941
[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault

[630]
[631]
[632]
[633]
[634]
[635] [636]
[637]
[638]
[639]
Underfull \hbox (badness 1137) in paragraph at lines 41539--41545
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails

Underfull \hbox (badness 4967) in paragraph at lines 41557--41562
[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple

[640]
[641]
Underfull \hbox (badness 1616) in paragraph at lines 41677--41682
[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions

[642]
[643]
[644]
[645]
Underfull \vbox (badness 3803) has occurred while \output is active
[646]
[647]
[648]
[649]
[650]
Underfull \hbox (badness 1472) in paragraph at lines 42224--42227
[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see

[651]
[652]
[653]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 42436.


[654]
[655]
[656]
[657]
[658]
[659]
[660]
[661]
[662]
[663]
[664]
[665]
Underfull \hbox (badness 10000) in paragraph at lines 43175--43179
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca
n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4
/m/sl/10 length(bin) >

[666]
[667]
[668]
[669]
[670]
Underfull \hbox (badness 10000) in paragraph at lines 43534--43537
[][][]\T1/zi4/m/sl/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] 
[][]$https : / / developer . r-[]project . org /

[671]
[672]
[673]
Underfull \hbox (badness 10000) in paragraph at lines 43718--43722
[][][]\T1/zi4/m/sl/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s
l/10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 taskCallb
ackManager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/sl/10 https : / / developer .


[674]
[675]
[676]
[677]
[678]
[679]
[680]
[681]
[682]
[683]
Underfull \hbox (badness 10000) in paragraph at lines 44366--44369
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[]
[] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time
-[]zones /

[684]
[685]
[686]
[687]
[688]
[689]
Underfull \vbox (badness 10000) has occurred while \output is active
[690]
[691]
[692]
[693]
[694]
[695]
[696]
[697]
Underfull \hbox (badness 1990) in paragraph at lines 45282--45290
[]\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an
y er-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 45282--45290
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less

[698]
[699]
[700]
[701]
[702]
[703]
[704]
[705]
[706]
[707]
[708]
[709]
[710]
[711]
[712]
[713]
[714]
[715]
[716]
[717]
[718]
[719]
Underfull \hbox (badness 1014) in paragraph at lines 46719--46722
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me
-di-ately, even if

[720]
[721]
Underfull \hbox (badness 2401) in paragraph at lines 46852--46856
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][]("
warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a

[722]
[723]
Underfull \hbox (badness 3492) in paragraph at lines 46978--46980
[]\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/
ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e.,

[724]
[725]
Underfull \hbox (badness 2111) in paragraph at lines 47064--47069
\T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10
 is not empty, these are used as col-umn names.

[726]
[727]
[728]
Underfull \hbox (badness 4001) in paragraph at lines 47312--47314
[]\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard 
eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/sl/10 https : / / developer 
.

[729]
[730]
[731]
[732]
[733]
[734]
[735]
Underfull \hbox (badness 5417) in paragraph at lines 47713--47717
[]\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re
ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas

[736]
Underfull \hbox (badness 10000) in paragraph at lines 47774--47778
[]\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d
ard' reg-exps, in-clud-ing el-e-ments named

[737]) (./compiler-pkg.tex
[738]
Chapter 2.

[739]
[740]
[741]
[742]) (./datasets-pkg.tex
Chapter 3.

[743]
[744]
[745]
[746]
[747] [748]
[749]
[750]
[751]
[752]
[753]
[754]
[755]
[756]
[757]
[758]
[759]
Underfull \hbox (badness 1097) in paragraph at lines 1034--1038
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.

[760]
[761]
[762]
[763]
[764]
[765]
[766]
[767]
[768]
[769]
[770]
[771] [772]
[773]
[774]
[775]
[776]
[777] [778]
[779]
[780]
[781]
[782] [783]
[784]
[785]
[786]
[787]
[788]
[789]
[790]
[791]
[792]
[793]
[794]
[795]
[796]
[797]
[798]
[799]
[800]
[801]
Overfull \hbox (2.27475pt too wide) in paragraph at lines 3524--3524
 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis
t.html#Geographic%20Centers[] 

[802]
[803]
[804]
[805]
[806]
[807]
[808]
[809]
[810]
[811]
[812]
[813]
[814]
[815]
[816]
[817]
[818]
[819]
[820]
[821]
[822]
[823]
[824]
[825]) (./grDevices-pkg.tex
[826]
Chapter 4.

[827]
[828]
[829]
[830]
[831]
Underfull \hbox (badness 2221) in paragraph at lines 282--286
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[]
\T1/ptm/m/n/10 , with iden-ti-cal mean-ing to

Underfull \hbox (badness 10000) in paragraph at lines 297--302
[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/sl/10 axisTicks[][][]() []\T1
/ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1
/ptm/m/n/10 in

[832]
[833]
[834]
[835]
[836]
[837]
[838]
[839]
[840]
Underfull \hbox (badness 1424) in paragraph at lines 901--903
[][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a
nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b
e spec-i-fied as

[841]
[842]
[843]
[844]
[845]
[846]
Underfull \hbox (badness 5175) in paragraph at lines 1229--1231
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in

[847]
[848]
Underfull \hbox (badness 2512) in paragraph at lines 1348--1350
[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar
chive . org / web / 20190613001950 / http : / / efg2 . com /

[849]
[850]
[851]
[852]
[853]
Underfull \hbox (badness 1490) in paragraph at lines 1648--1653
\T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and 
[][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []
\T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10
 and

Underfull \hbox (badness 3302) in paragraph at lines 1661--1665
[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of

[854]
[855]
[856]
[857]
[858]
[859]
Underfull \hbox (badness 1325) in paragraph at lines 2076--2086
[]\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png
alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/
m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm
/m/n/10 ,

[860]
[861]
Underfull \hbox (badness 10000) in paragraph at lines 2188--2190
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of

[862]
[863]
[864]
Underfull \hbox (badness 6758) in paragraph at lines 2376--2379
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are

[865]
[866]
[867]
[868]
[869]
[870]
[871]
[872]
[873]
[874]
[875]
[876]
Underfull \hbox (badness 10000) in paragraph at lines 3132--3133


[877]
[878]
[879]
[880]
[881]
[882]
[883]
[884]
[885]
[886]
[887]
[888]
Underfull \vbox (badness 3803) has occurred while \output is active
[889]
[890]
[891]
[892]
Underfull \vbox (badness 10000) has occurred while \output is active
[893]
[894]
[895]
[896]
Underfull \hbox (badness 1418) in paragraph at lines 4410--4417
\T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H
elvetica-Narrow"[]\T1/ptm/m/n/10 ,

[897]
[898]
[899]
[900]
[901]
[902]
[903]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.4875 \aliasA{symbol}{plotmath}{symbol}
                                         [904] [905]
[906]
[907]
Underfull \vbox (badness 3803) has occurred while \output is active
[908]
[909]
Underfull \hbox (badness 1584) in paragraph at lines 5268--5270
[]\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1
/zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See

Underfull \hbox (badness 1067) in paragraph at lines 5272--5279
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-

[910]
[911]
[912]
[913]
Underfull \hbox (badness 1377) in paragraph at lines 5574--5579
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues

[914]
[915]
Underfull \hbox (badness 1377) in paragraph at lines 5678--5683
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and

[916]
Underfull \hbox (badness 7344) in paragraph at lines 5747--5749
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso

[917]
[918]
Underfull \hbox (badness 2035) in paragraph at lines 5886--5895
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 5886--5895
\T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti
ca-Narrow"[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 5886--5895
[]\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P
alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1
/zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/
ptm/m/n/10 ,

[919]
Underfull \hbox (badness 10000) in paragraph at lines 5953--5958
[]\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/
zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu /

[920]
[921]
[922]
Underfull \hbox (badness 1546) in paragraph at lines 6093--6101
[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n
/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 ,

[923]
[924]
[925]
[926]
[927]
[928]
Underfull \hbox (badness 6625) in paragraph at lines 6537--6540
[]\T1/ptm/m/n/10 Murrell, P., Ooms, J., Al-laire, J.J. (2015), "Record-ing and 
Re-play-ing the Graph-

[929]
[930]
Underfull \hbox (badness 10000) in paragraph at lines 6641--6644
[]\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (
red/green/blue) into HSV space

[931]
[932]
[933]
[934]
Overfull \hbox (9.73488pt too wide) in paragraph at lines 6878--6878
 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro
blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/
zi4/m/n/9 ):[] 

[935]
[936]
[937]
[938]
[939]
[940]
[941]
[942]
[943]
[944]
Underfull \hbox (badness 1189) in paragraph at lines 7507--7509
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of

[945]
Underfull \hbox (badness 10000) in paragraph at lines 7612--7614
[]\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C
JK lan-guages and

[946]
[947]
[948]
[949]
[950]
Underfull \hbox (badness 3780) in paragraph at lines 7927--7933
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/s
l/10 "AvantGarde"[]\T1/ptm/m/n/10 ,

[951]
[952]
[953]
[954]
[955]
[956]) (./graphics-pkg.tex
Chapter 5.

[957]
[958]
[959]
[960]
[961]
[962]
[963]
[964]
[965]
[966]
[967]
Underfull \vbox (badness 3803) has occurred while \output is active
[968]
[969]
[970]
[971]
[972]
[973]
Overfull \hbox (12.71341pt too wide) in paragraph at lines 1037--1037
 []        \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 

[974]
[975]
[976]
[977]
[978]
[979]
Underfull \hbox (badness 4634) in paragraph at lines 1410--1413
[][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor
ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1
/ptm/m/n/10 ,

[980]
[981]
[982]
[983]
[984]
[985]
[986]
[987]
[988]
[989]
[990]
[991]
[992]
[993]
[994]
[995]
[996]
Underfull \hbox (badness 1728) in paragraph at lines 2388--2390
[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10
 "n" []\T1/ptm/m/n/10 to sup-press and see also

[997]
Underfull \hbox (badness 1009) in paragraph at lines 2481--2488
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to

[998]
[999]
[1000]
[1001]
[1002]
[1003]
[1004]
[1005]
[1006]
[1007]
[1008]
[1009]
[1010]
[1011]
[1012]
[1013]
[1014]
[1015]
[1016]
[1017]
[1018]
[1019]
[1020]
Underfull \vbox (badness 10000) has occurred while \output is active
[1021]
Underfull \vbox (badness 10000) has occurred while \output is active
[1022]
[1023]
[1024]
[1025]
[1026]
[1027]
Underfull \vbox (badness 3803) has occurred while \output is active
[1028]
[1029]
[1030]
[1031]
[1032]
[1033]
[1034]
Underfull \hbox (badness 3229) in paragraph at lines 4733--4738
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see

[1035]
[1036]
[1037]
[1038]
[1039]
Underfull \hbox (badness 1107) in paragraph at lines 5233--5239
[]\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc
aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c
h),

[1040]
[1041]
Underfull \hbox (badness 10000) in paragraph at lines 5362--5365


[1042 </build/reproducible-path/r-base-4.4.3/library/graphics/help/figures/mai.
pdf>]
Underfull \hbox (badness 10000) in paragraph at lines 5423--5425


[1043 </build/reproducible-path/r-base-4.4.3/library/graphics/help/figures/oma.
pdf>]
[1044]
[1045]
[1046]
[1047]
[1048]
[1049]
[1050]
[1051]
[1052]
[1053]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6097 \aliasA{plot}{plot.default}{plot}
                                        
[1054]
[1055]
[1056]
[1057]
[1058]
[1059]
[1060]
[1061]
[1062]
[1063]
[1064]
[1065]
[1066]
[1067]
Overfull \hbox (31.57222pt too wide) in paragraph at lines 6997--6998
[][] 

[1068 </build/reproducible-path/r-base-4.4.3/library/graphics/help/figures/pch.
pdf>]
[1069]
Underfull \vbox (badness 3803) has occurred while \output is active
[1070]
[1071]
[1072]
[1073]
[1074]
[1075]
[1076]
[1077]
[1078]
[1079]
[1080]
[1081]
[1082]
[1083]
[1084]
[1085]
[1086]
[1087]
[1088]
[1089]
[1090]
[1091]
[1092]
[1093]
[1094]
[1095]
[1096]
[1097]
[1098]
[1099]
[1100]
[1101]
[1102]
Underfull \hbox (badness 4954) in paragraph at lines 9109--9111
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/sl/10 par(c("font.sub",

Underfull \hbox (badness 1019) in paragraph at lines 9111--9113
[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa
r(c("font.lab", "cex.lab",

[1103]
[1104]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9191 \HeaderA{units}{Graphical Units}{units}
                                              
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9191 \HeaderA{units}{Graphical Units}{units}
                                              
[1105]
[1106]
[1107]
[1108]) (./grid-pkg.tex
Chapter 6.

[1109]
[1110]
[1111]
[1112]
[1113]
[1114]
[1115]
[1116]
[1117]
Underfull \hbox (badness 2680) in paragraph at lines 551--554
[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an
d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal
-cu-la-tion of

[1118]
[1119]
[1120]
[1121]
[1122] [1123]
[1124]
[1125]
[1126]
[1127]
[1128]
Underfull \hbox (badness 4279) in paragraph at lines 1188--1197
[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/
ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T
1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi
ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 ,

[1129]
[1130]
[1131]
[1132]
[1133]
[1134]
[1135]
[1136]
[1137]
[1138]
[1139]
[1140]
[1141]
[1142]
[1143]
[1144]
[1145]
[1146]
[1147]
[1148]
[1149]
[1150]
[1151]
[1152]
[1153]
[1154]
[1155]
[1156]
[1157]
[1158]
[1159]
[1160]
Underfull \hbox (badness 10000) in paragraph at lines 3103--3105
[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see

[1161]
[1162]
[1163]
[1164]
[1165]
[1166]
[1167]
[1168]
[1169]
[1170]
[1171]
[1172]
[1173]
[1174]
[1175]
[1176]
Underfull \vbox (badness 10000) has occurred while \output is active
[1177]
[1178]
[1179]
[1180]
[1181]
[1182]
[1183]
[1184]
[1185]
[1186]
[1187]
[1188]
[1189]
[1190]
Underfull \hbox (badness 1067) in paragraph at lines 4842--4845
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only

[1191]
[1192]
[1193]
[1194]
[1195]
[1196]
Underfull \hbox (badness 7256) in paragraph at lines 5193--5195
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by

[1197]
[1198]
[1199]
[1200]
[1201]
[1202]
[1203]
Underfull \hbox (badness 2142) in paragraph at lines 5647--5651
[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/
10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or

[1204]
[1205]
Underfull \hbox (badness 4699) in paragraph at lines 5729--5734
[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o
b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 
and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a

[1206]
[1207]
[1208]
[1209]
[1210]
[1211]
[1212]
[1213]
[1214]
[1215]
[1216]
[1217]
[1218]
[1219]
[1220]
[1221]
[1222]
[1223]
[1224]
[1225]
[1226]
[1227]
[1228]
[1229]
[1230]
[1231]
[1232]
[1233]
[1234]
[1235]
[1236]
[1237]) (./methods-pkg.tex
[1238]
Chapter 7.

[1239]
[1240]
[1241]
[1242]
[1243]
[1244]
[1245]
[1246]
Underfull \vbox (badness 10000) has occurred while \output is active
[1247]
Underfull \vbox (badness 10000) has occurred while \output is active
[1248]
[1249]
[1250]
[1251]
[1252]
[1253]
[1254]
[1255]
[1256]
[1257]
Underfull \hbox (badness 2237) in paragraph at lines 1384--1386
[]\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te
nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s
l/10 "package"[]\T1/ptm/m/n/10 , also of class

[1258]
[1259]
[1260]
[1261]
[1262]
[1263]
[1264]
[1265]
[1266]
Underfull \hbox (badness 10000) in paragraph at lines 1980--1985
[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n
/10 can be an ob-ject of class

Underfull \hbox (badness 1038) in paragraph at lines 1980--1985
\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/
m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the

[1267]
[1268]
[1269]
Underfull \hbox (badness 2213) in paragraph at lines 2212--2217
[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/sl/10 where =

[1270]
[1271]
[1272]
[1273]
[1274]
Underfull \hbox (badness 10000) in paragraph at lines 2572--2575
[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] []
\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10
 cre-ate ob-jects of class

[1275]
[1276]
Underfull \hbox (badness 1132) in paragraph at lines 2712--2716
[]\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi
4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10
 slot of the re-turned re-sult is in

[1277]
Underfull \hbox (badness 1033) in paragraph at lines 2748--2753
\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 
re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1
0 re-stores the

[1278]
[1279]
[1280]
[1281]
[1282]
[1283]
[1284]
Underfull \hbox (badness 1102) in paragraph at lines 3305--3307
[]\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string
 name of the pack-age (with-out the ex-tra-ne-ous

[1285]
[1286]
[1287]
[1288]
[1289]
Underfull \hbox (badness 10000) in paragraph at lines 3642--3651
[]\T1/ptm/m/n/10 The

[1290]
[1291]
Underfull \hbox (badness 10000) in paragraph at lines 3762--3763
[] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi
tude = "numeric",

[1292]
Underfull \hbox (badness 10000) in paragraph at lines 3846--3847
[]\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character"
), contains =

[1293]
[1294]
[1295]
[1296]
[1297]
[1298]
[1299]
[1300]
[1301]
[1302]
Underfull \hbox (badness 1769) in paragraph at lines 4477--4483
[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10
 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar


Underfull \hbox (badness 1939) in paragraph at lines 4477--4483
[]\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [
][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u
sed by

[1303]
[1304]
[1305]
[1306]
[1307]
[1308]
[1309]
[1310]
[1311]
[1312]
Underfull \vbox (badness 10000) has occurred while \output is active
[1313]
[1314]
[1315]
Underfull \hbox (badness 4036) in paragraph at lines 5442--5445
[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m
/n/10 the method to use in re-sponse to a

[1316]
[1317]
Underfull \hbox (badness 3803) in paragraph at lines 5517--5519
[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to

[1318]
[1319]
[1320]
Underfull \hbox (badness 1087) in paragraph at lines 5748--5753
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing

[1321]
[1322]
[1323]
[1324]
[1325]
[1326]
[1327]
[1328]
[1329]
Underfull \hbox (badness 1675) in paragraph at lines 6455--6461
[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe
fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class

[1330]
[1331]
[1332]
[1333]
Underfull \vbox (badness 10000) has occurred while \output is active
[1334]
[1335]
[1336]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has 
been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6976 \aliasA{S4}{S3Part}{S4}
                              
[1337]
[1338]
[1339]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7232 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7234 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7235 \aliasA{Math}{S4groupGeneric}{Math}
                                          
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7237 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7238 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                
[1340]
Underfull \hbox (badness 2050) in paragraph at lines 7299--7303
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing

[1341]
[1342]
[1343]
Underfull \hbox (badness 1286) in paragraph at lines 7487--7489
[]\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o
nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions,
 typ-i-cally

[1344]
[1345]
[1346]
[1347]
[1348]
[1349]
[1350]
[1351]
[1352]
[1353]
[1354]
[1355]
[1356]
[1357]
[1358]
[1359]
[1360]
[1361]
[1362]
[1363]
[1364]
[1365]
[1366]
[1367]
[1368]
[1369]
[1370]
Underfull \vbox (badness 10000) has occurred while \output is active
[1371]
[1372]
[1373]
[1374]
[1375]
[1376]
[1377]
[1378]
[1379]
[1380]
[1381]
[1382]
[1383]
[1384]
Underfull \hbox (badness 1158) in paragraph at lines 10494--10497
[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/zi4/m/sl/10 https : / / johnmchambers . su . domains /

[1385]
Underfull \hbox (badness 1852) in paragraph at lines 10572--10576
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,

[1386]
[1387]
[1388]
[1389]) (./parallel-pkg.tex
[1390]
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' []
[]RNG[][][]: see

[1391]
[1392]
[1393]
[1394]
[1395]
Underfull \hbox (badness 1320) in paragraph at lines 300--303
[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.

[1396]
[1397]
[1398]
[1399]
[1400]
[1401]
[1402]
[1403]
[1404]
[1405]
[1406]
[1407]
[1408]
[1409]
[1410]
[1411]
[1412]
Underfull \hbox (badness 3386) in paragraph at lines 1400--1403
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10
 .Random.seed []\T1/ptm/m/n/10 when the

[1413]
[1414]) (./splines-pkg.tex
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 <bates@stat.wisc.edu> \T1/ptm
/m/n/10 and William N. Ven-ables

[1415]
[1416]
[1417]
[1418]
[1419]
[1420]
[1421]
[1422]
[1423]
[1424]
[1425]
[1426]
[1427]
[1428]
[1429]
[1430]) (./stats-pkg.tex
Chapter 10.

[1431]
[1432]
[1433]
[1434]
[1435]
[1436]
[1437]
[1438]
[1439]
[1440]
[1441]
[1442]
[1443]
[1444]
Underfull \hbox (badness 1412) in paragraph at lines 901--903
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 
lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo
r

[1445]
[1446]
[1447]
[1448]
[1449]
[1450]
[1451]
[1452]
Underfull \hbox (badness 2503) in paragraph at lines 1389--1392
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1453]
[1454]
[1455]
[1456]
[1457]
[1458]
[1459]
[1460]
[1461]
[1462]
[1463]
[1464]
[1465]
[1466]
[1467]
[1468]
[1469]
[1470]
[1471]
[1472]
[1473]
[1474]
[1475]
[1476]
[1477]
[1478]
[1479]
[1480]
[1481]
[1482]
[1483]
[1484]
[1485]
[1486]
Underfull \hbox (badness 2503) in paragraph at lines 3561--3564
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1487]
[1488]

Package amsmath Warning: Foreign command \atopwithdelims;
(amsmath)                \frac or \genfrac should be used instead
(amsmath)                 on input line 3674.


[1489]
[1490]
[1491]
[1492]
[1493]
[1494]
[1495]
[1496]
[1497]
[1498]
[1499]
[1500]
[1501]
[1502]
[1503]
[1504]
[1505]
[1506]
Underfull \hbox (badness 3989) in paragraph at lines 4820--4827
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =

[1507]
[1508]
[1509]
[1510]
[1511]
[1512]
[1513]
[1514]
[1515]
[1516]
Underfull \hbox (badness 2556) in paragraph at lines 5474--5477
[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[
]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 
"filter"[]\T1/ptm/m/n/10 . For

[1517]
[1518]
[1519]
[1520]
[1521]
[1522]
[1523]
Underfull \hbox (badness 2503) in paragraph at lines 5886--5890
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1524]
[1525]
[1526]
[1527]
[1528]
[1529]
[1530]
[1531]
[1532]
[1533]
[1534]
[1535]
[1536]
Underfull \hbox (badness 7081) in paragraph at lines 6678--6681
[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c
an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in
g method

Underfull \hbox (badness 10000) in paragraph at lines 6682--6684
[]\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-
gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also

[1537]
[1538]
[1539]
[1540]
[1541]
[1542]
Underfull \vbox (badness 10000) has occurred while \output is active
[1543]
[1544]
[1545]
Underfull \vbox (badness 10000) has occurred while \output is active
[1546]
[1547]
[1548]
[1549]
[1550]
Underfull \hbox (badness 10000) in paragraph at lines 7578--7581
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/zi4/m/sl/10 dist[][][]()[]\T1/ptm/m/n/10 , the

[1551]
[1552]
[1553]
[1554]
[1555]
[1556]
Underfull \vbox (badness 3803) has occurred while \output is active
[1557]
[1558]
[1559]
[1560]
[1561]
[1562]
[1563]
[1564]
[1565]
[1566]
[1567]
[1568]
[1569]
[1570]
[1571]
[1572]
Underfull \vbox (badness 3803) has occurred while \output is active
[1573]
[1574]
[1575]
[1576]
[1577]
[1578]
Underfull \hbox (badness 2626) in paragraph at lines 9275--9278
[]\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\
T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If

[1579]
Underfull \hbox (badness 2503) in paragraph at lines 9382--9386
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1580]
[1581]
[1582]
[1583]
[1584]
[1585]
[1586]
[1587]
[1588]
[1589]
[1590]
[1591]
[1592]
[1593]
[1594]
[1595]
[1596]
[1597]
[1598]
[1599]
[1600]
Underfull \hbox (badness 4518) in paragraph at lines 10730--10735
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1601]
[1602]
[1603]
[1604]
[1605]
Underfull \hbox (badness 2142) in paragraph at lines 11092--11095
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

Underfull \hbox (badness 1253) in paragraph at lines 11111--11114
[]\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t
o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac
h IWLS it-er-a-tion. Hence,

[1606]
Underfull \hbox (badness 1708) in paragraph at lines 11173--11177
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:

[1607]
[1608]
[1609]
[1610]
[1611]
[1612]
Underfull \hbox (badness 1694) in paragraph at lines 11569--11572
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

[1613]
[1614]
[1615]
[1616]
[1617]
[1618]
[1619]
[1620]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.12050 \aliasA{hat}{influence.measures}{hat}
                                             
[1621]
[1622]
Underfull \hbox (badness 1484) in paragraph at lines 12195--12197
[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists
 mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing

[1623]
[1624]
[1625]
[1626]
[1627]
[1628]
[1629]
[1630]
[1631]
[1632]
Underfull \hbox (badness 10000) in paragraph at lines 12782--12784
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d
efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit =

[1633]
[1634]
[1635]
[1636]
[1637]
Underfull \hbox (badness 2894) in paragraph at lines 13124--13128
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method

[1638]
[1639]
[1640]
[1641]
[1642]
[1643]
[1644]
Underfull \hbox (badness 1496) in paragraph at lines 13552--13558
[]\T1/ptm/m/n/10 Gunar Schr�er and Di-et-rich Tren-kler (1995). Ex-act and Ran-
dom-iza-tion Dis-tri-bu-tions of

[1645]
[1646]
[1647]
[1648]
[1649]
[1650]
Underfull \hbox (badness 4518) in paragraph at lines 13955--13960
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1651]
[1652]
[1653]
[1654]
[1655]
[1656]
[1657]
[1658]
[1659]
[1660]
Underfull \hbox (badness 4518) in paragraph at lines 14617--14622
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1661]
[1662]
[1663]
Underfull \hbox (badness 6412) in paragraph at lines 14757--14761
[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int
erpolate", statistics =

Underfull \hbox (badness 1199) in paragraph at lines 14764--14766
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is

[1664]
[1665]
[1666]
[1667]
[1668]
[1669]
[1670]
[1671]
[1672]
[1673]
[1674]
[1675]
[1676]
[1677]
[1678]
[1679]
[1680]
[1681]
Underfull \hbox (badness 2503) in paragraph at lines 15841--15845
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1682]
[1683]
[1684]
[1685]
[1686]
[1687]
[1688]
[1689]
Underfull \hbox (badness 10000) in paragraph at lines 16354--16360
[]\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to

Underfull \hbox (badness 1867) in paragraph at lines 16354--16360
[]\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model.
response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\
T1/ptm/m/n/10 sums any terms

[1690]
[1691]
[1692]
[1693]
[1694]
[1695]
[1696]
[1697]
[1698]
[1699]
[1700]
[1701]
[1702]
[1703]
[1704]
[1705]
[1706]
[1707]
[1708]
[1709]
[1710]
[1711]
[1712]
[1713]
[1714]
[1715]
[1716]
Underfull \hbox (badness 1158) in paragraph at lines 18012--18015
[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T
1/ptm/m/n/10 as the data ar-gu-ment. The ac-

[1717]
[1718]
Underfull \vbox (badness 10000) has occurred while \output is active
[1719]
Underfull \vbox (badness 10000) has occurred while \output is active
[1720]
[1721]
[1722]
[1723]
[1724]
[1725]
[1726]
[1727]
[1728]
[1729]
[1730]
[1731]
[1732]
[1733]
Underfull \hbox (badness 1377) in paragraph at lines 19055--19060
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 19060--19063
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 2343) in paragraph at lines 19073--19077
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 3471) in paragraph at lines 19073--19077
\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) +
 reltol) []\T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 19081--19085
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if

[1734]
[1735]
[1736]
Underfull \vbox (badness 10000) has occurred while \output is active
[1737]
Overfull \hbox (15.73795pt too wide) in paragraph at lines 19306--19306
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

Overfull \hbox (3.75941pt too wide) in paragraph at lines 19309--19309
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 

[1738]
[1739]
[1740]
[1741]
[1742]
[1743]
[1744]
Underfull \hbox (badness 1337) in paragraph at lines 19771--19774
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1745]
[1746]
[1747]
[1748]
[1749]
[1750]
[1751]
[1752]
[1753]
Underfull \hbox (badness 10000) in paragraph at lines 20240--20246
\T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty
 = cook.lty, col = cook.col, text.col

[1754]
[1755]
[1756]
[1757]
[1758]
[1759]
[1760]
Underfull \hbox (badness 1194) in paragraph at lines 20667--20670
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence

[1761]
[1762]
[1763]
[1764]
[1765]
[1766]
Underfull \hbox (badness 2503) in paragraph at lines 21045--21048
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3919) in paragraph at lines 21072--21074
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" 
[]\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson

[1767]
[1768]
[1769]
[1770]
[1771]
[1772]
[1773]
[1774]
[1775]
[1776]
[1777]
[1778]
[1779]
[1780]
[1781]
[1782]
[1783]
[1784]
Underfull \hbox (badness 10000) in paragraph at lines 22150--22156
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,

[1785]
[1786]
[1787]
[1788]
[1789]
[1790]
[1791]
[1792]
[1793]
[1794]
[1795]
[1796]
[1797]
[1798]
[1799]
[1800]
[1801]
[1802]
[1803]
[1804]
[1805]
[1806]
[1807]
[1808]
[1809]
Underfull \hbox (badness 1337) in paragraph at lines 23626--23632
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1810]
[1811]
[1812]
[1813]
[1814]
[1815]
[1816]
[1817]
Underfull \hbox (badness 1436) in paragraph at lines 24116--24119
\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2,

[1818]
Underfull \hbox (badness 10000) in paragraph at lines 24254--24255
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o
rg / wiki / Quantile # Estimating _ quantiles _ from _ a _

[1819]
[1820]
[1821]
[1822]
[1823]
[1824]
[1825]
[1826]
[1827]
[1828]
[1829]
[1830]
[1831]
[1832]
[1833]
[1834]
Underfull \hbox (badness 1824) in paragraph at lines 25224--25230
[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are 
first re-placed by al-ter-

Underfull \hbox (badness 1033) in paragraph at lines 25224--25230
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where

[1835]
Underfull \hbox (badness 10000) in paragraph at lines 25245--25248
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = 
runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] =

[1836]
[1837]
[1838]
[1839]
[1840]
[1841]
[1842]
[1843]
[1844]
Underfull \hbox (badness 2165) in paragraph at lines 25820--25825
[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T
1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,

[1845]
[1846]
[1847]
[1848]
Underfull \hbox (badness 1867) in paragraph at lines 26030--26032
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

Underfull \hbox (badness 10000) in paragraph at lines 26046--26050
[]\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb
ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <-

[1849]
[1850]
[1851]
[1852]
[1853]
[1854]
[1855]
[1856]
[1857]
[1858]
[1859]
[1860]
[1861]
[1862]
[1863]
[1864]
[1865]
[1866]
[1867]
[1868]
[1869]
[1870]
[1871]
[1872]
[1873]
Underfull \vbox (badness 10000) has occurred while \output is active
[1874]
[1875]
Underfull \hbox (badness 3514) in paragraph at lines 27698--27703
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1876]
[1877]
[1878]
[1879]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 27932--27932
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 

Underfull \hbox (badness 3514) in paragraph at lines 27968--27974
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1880]
Overfull \hbox (14.22568pt too wide) in paragraph at lines 28028--28028
 []            \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=
1e-11, nDcentral=TRUE), trace=TRUE)[] 

[1881]
[1882]
[1883]
[1884]
Underfull \hbox (badness 3514) in paragraph at lines 28201--28206
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1885]
Underfull \hbox (badness 3514) in paragraph at lines 28288--28293
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1886]
Underfull \hbox (badness 3514) in paragraph at lines 28353--28358
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1887]
[1888]
Underfull \hbox (badness 3514) in paragraph at lines 28447--28452
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1889]
[1890]
Underfull \hbox (badness 6691) in paragraph at lines 28539--28544
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[]
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1891]
[1892]
[1893]
[1894]
[1895]
[1896]
[1897]
[1898]
Underfull \hbox (badness 4024) in paragraph at lines 29026--29029
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which

[1899]
[1900]
[1901]
[1902]
[1903]
[1904]
[1905]
[1906]
[1907]
[1908]
Underfull \hbox (badness 5431) in paragraph at lines 29629--29631
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if

[1909]
[1910]
[1911]
Underfull \hbox (badness 5431) in paragraph at lines 29839--29842
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if

[1912]
[1913]
[1914]
[1915]
[1916]
[1917]
Underfull \hbox (badness 1337) in paragraph at lines 30154--30158
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1918]
[1919]
Underfull \hbox (badness 1127) in paragraph at lines 30291--30294
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate
 only for

[1920]
[1921]
[1922]
Underfull \hbox (badness 1616) in paragraph at lines 30497--30500
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when

[1923]
[1924]
[1925]
[1926]
[1927]
[1928]
[1929]
[1930]
[1931]
[1932]
[1933]
[1934]
[1935]
[1936]
[1937]
[1938]
[1939]
[1940]
[1941]
[1942]
[1943]
Underfull \hbox (badness 3557) in paragraph at lines 31724--31728
[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non-
[]\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re
ct []\T1/zi4/m/sl/10 interval =

[1944]
[1945]
[1946]
Underfull \vbox (badness 10000) has occurred while \output is active
[1947]
[1948]
[1949]
Underfull \hbox (badness 1337) in paragraph at lines 32091--32095
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1950]
[1951]
[1952]
[1953]
[1954]
[1955]
[1956]
[1957]
[1958]
Underfull \hbox (badness 1337) in paragraph at lines 32619--32623
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1959]
[1960]
[1961]
Overfull \hbox (0.71648pt too wide) in paragraph at lines 32827--32827
 []\T1/zi4/m/n/9 wilcox.test( 4:2,      3:1,     paired=TRUE) # Warning:  canno
t compute exact p-value with ties[] 

[1962]
[1963]
[1964]
Overfull \hbox (19.71954pt too wide) in paragraph at lines 32988--32988
 []      \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep
s = getOption("ts.eps"), ...)[] 

[1965]
[1966]
[1967]
[1968]
[1969]) (./stats4-pkg.tex
[1970]
Chapter 11.

[1971]
[1972]
[1973]
Underfull \vbox (badness 10000) has occurred while \output is active
[1974]
Underfull \vbox (badness 10000) has occurred while \output is active
[1975]
[1976]
[1977]
[1978]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas
h.methods}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                  
[1979]
[1980]
[1981]) (./tcltk-pkg.tex
[1982]
Chapter 12.

[1983]
[1984]
[1985]
[1986]
[1987]
[1988]
[1989]
Underfull \vbox (badness 10000) has occurred while \output is active
[1990]
Underfull \vbox (badness 10000) has occurred while \output is active
[1991]
Underfull \hbox (badness 1546) in paragraph at lines 672--679
[]\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-
ing any Tk or Tcl com-mand by sim-ply run-ning

[1992]
[1993]
[1994]
[1995]
[1996]
Underfull \vbox (badness 10000) has occurred while \output is active
[1997]
[1998]
[1999]
[2000]
[2001]
[2002]
[2003]
[2004]) (./tools-pkg.tex
Chapter 13.

[2005]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.


[2006]
Underfull \hbox (badness 3039) in paragraph at lines 167--170
[]\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil
l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas

[2007]
[2008]
Underfull \hbox (badness 1308) in paragraph at lines 288--301
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

Underfull \hbox (badness 4967) in paragraph at lines 288--301
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b
ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 288--301
[]\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format
InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 
, []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 288--301
[]\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi
s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and

[2009]
[2010]
Underfull \hbox (badness 3039) in paragraph at lines 392--394
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi
ne to use. Over-rides any

[2011]
Underfull \hbox (badness 1142) in paragraph at lines 464--468
\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory

[2012]
[2013]
[2014]
[2015]
[2016]
[2017]
[2018] [2019]
[2020]
[2021]
[2022]
[2023]
[2024]
Underfull \hbox (badness 1014) in paragraph at lines 1220--1222
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

Underfull \hbox (badness 7238) in paragraph at lines 1226--1228
[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous

[2025]
Underfull \hbox (badness 10000) in paragraph at lines 1263--1266
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1263--1266
[]\T1/zi4/m/sl/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and 
[]\T1/zi4/m/sl/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,

[2026]
[2027]
[2028]
[2029]
[2030]
[2031]
Underfull \hbox (badness 10000) in paragraph at lines 1637--1640
[]\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/sl/10 CRAN_aliases_db[]\T1/ptm
/m/n/10 , []\T1/zi4/m/sl/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10
 CRAN_current_db []\T1/ptm/m/n/10 and

[2032]
[2033]
Underfull \hbox (badness 4096) in paragraph at lines 1756--1764
\T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

Underfull \hbox (badness 1082) in paragraph at lines 1766--1768
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 for all known trees (see

[2034]
[2035]
[2036]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1967 \aliasA{GSC}{find\_gs\_cmd}{GSC}
                                       
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC
MD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1968 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                  
[2037]
[2038]
[2039]
[2040]
[2041]
[2042]
[2043]
[2044]
Underfull \hbox (badness 3386) in paragraph at lines 2442--2445
[]\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/sl/10 as.Rconcordance []\T1
/ptm/m/n/10 searches for strings match-ing the pat-tern of

[2045]
[2046]
Underfull \hbox (badness 4096) in paragraph at lines 2582--2590
\T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

[2047]
[2048]
[2049]
[2050]
[2051]
[2052]
[2053]
[2054]
[2055]
[2056]
[2057]
[2058]
[2059]
[2060]
[2061]
Underfull \hbox (badness 1424) in paragraph at lines 3516--3518
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
-tor of links, as re-turned by

[2062]
[2063]
[2064]
[2065]
[2066]
[2067]
[2068]
[2069]
[2070]
[2071]
[2072]
Underfull \hbox (badness 10000) in paragraph at lines 4232--4234
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,

[2073]
[2074]
[2075]
Underfull \hbox (badness 10000) in paragraph at lines 4388--4391
[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/sl/10 texi2dvi []\T1/ptm/m/n/10 
5.0 and later; []\T1/zi4/m/sl/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-
tion

[2076]
[2077]
[2078]
[2079]
[2080]
Underfull \hbox (badness 1796) in paragraph at lines 4745--4750
[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/sl/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/sl/10 type =
=

[2081]
[2082]
Underfull \hbox (badness 1838) in paragraph at lines 4831--4837
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

Underfull \hbox (badness 10000) in paragraph at lines 4831--4837
\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file

[2083]
[2084]
[2085]
[2086]
Underfull \hbox (badness 2197) in paragraph at lines 5112--5122
[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/sl/10 available.packages[][][][]\T1/ptm/m/n/10 :

[2087]
Underfull \hbox (badness 1571) in paragraph at lines 5178--5182
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by

[2088]
[2089]
[2090]
[2091]) (./utils-pkg.tex
[2092]
Chapter 14.

[2093]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/sl/10 insertions[]\T1/ptm/m/n/10 ',

[2094]
[2095]
[2096]
[2097]
[2098]
[2099]
[2100]
[2101]
[2102]
[2103]
Underfull \hbox (badness 10000) in paragraph at lines 728--734
[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/sl/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/sl/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 728--734
[]\T1/zi4/m/sl/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10
 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the

[2104]
[2105]
[2106]
Underfull \hbox (badness 3861) in paragraph at lines 934--939
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/sl/10 
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,

[2107]
[2108]
[2109]
Underfull \hbox (badness 10000) in paragraph at lines 1139--1141
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing

[2110]
[2111]
[2112]
Underfull \vbox (badness 10000) has occurred while \output is active
[2113]
[2114]
[2115]
[2116]
[2117]
Underfull \hbox (badness 1371) in paragraph at lines 1666--1668
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to

[2118]
[2119]
[2120]
[2121]
[2122]
[2123]
[2124]
[2125]
[2126]
[2127]
[2128]
[2129]
Underfull \hbox (badness 2057) in paragraph at lines 2386--2388
[]\T1/ptm/m/n/10 None for []\T1/zi4/m/sl/10 chooseCRANmirror()[]\T1/ptm/m/n/10 
, this func-tion is in-voked for its side ef-fect of up-dat-ing

[2130]
Underfull \hbox (badness 2150) in paragraph at lines 2461--2468
[]\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/sl/10 citation() []\T1
/ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print

Underfull \hbox (badness 1400) in paragraph at lines 2461--2468
\T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I
f a pack-age has more

[2131]
[2132]
[2133]
Underfull \vbox (badness 3803) has occurred while \output is active
[2134]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2738 ... the Clipboard in MS Windows}{clipboard}
                                                  
[2135]
[2136]
[2137]
[2138]
[2139]
[2140]
[2141]
[2142]
[2143]
[2144]
[2145]
[2146]
[2147]
[2148]
[2149]
[2150]
[2151]
[2152]
[2153]
[2154]
[2155]
Underfull \hbox (badness 6842) in paragraph at lines 4048--4053
[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/sl/10 "libcurl" []\T1/ptm/m/n/1
0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use


[2156]
Underfull \hbox (badness 1430) in paragraph at lines 4111--4115
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the []\T1/zi4/m/sl/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the

[2157]
Underfull \hbox (badness 1184) in paragraph at lines 4182--4198
[]\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/sl/10 method = "libcurl"[]\T1/ptm
/m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS

Underfull \hbox (badness 1019) in paragraph at lines 4182--4198
\T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/sl/10 "Schannel"[]\T1/ptm/m/n/10 '. If
 it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari-

Underfull \hbox (badness 1668) in paragraph at lines 4182--4198
\T1/ptm/m/n/10 able []\T1/zi4/m/sl/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s
et to a path to a cer-tifi-cate bun-dle file, usu-ally named

[2158]
[2159]
Underfull \hbox (badness 10000) in paragraph at lines 4332--4334
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/sl/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and

[2160]
[2161]
[2162]
[2163]
[2164]
[2165]
[2166]
[2167]
[2168]
[2169]
[2170]
[2171]
[2172]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5111 ...mat Unordered and Ordered Lists}{format}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5111 ...mat Unordered and Ordered Lists}{format}
                                                  
[2173]
[2174]
[2175]
[2176]
[2177]
[2178]
[2179]
[2180]
Underfull \hbox (badness 1622) in paragraph at lines 5634--5638
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the

[2181]
[2182]
[2183]
[2184]
[2185]
[2186]
Underfull \hbox (badness 1448) in paragraph at lines 6019--6024
[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing

[2187]
[2188]
[2189]
[2190]
[2191]
[2192]
[2193]
[2194]
Underfull \hbox (badness 1371) in paragraph at lines 6567--6569
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to

[2195]
[2196]
Underfull \hbox (badness 1502) in paragraph at lines 6656--6662
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

Underfull \hbox (badness 2103) in paragraph at lines 6656--6662
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file

[2197]
[2198]
Underfull \hbox (badness 10000) in paragraph at lines 6833--6842
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,

Underfull \hbox (badness 3354) in paragraph at lines 6833--6842
\T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/sl/10 /html/packages.html\T1
/ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/sl/10 make.packages.html
[][][]()[]\T1/ptm/m/n/10 .

[2199]
Underfull \hbox (badness 2150) in paragraph at lines 6895--6898
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See

[2200]
[2201]
Underfull \hbox (badness 3118) in paragraph at lines 7034--7036
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for

[2202]
[2203]
[2204]
Underfull \hbox (badness 1325) in paragraph at lines 7213--7217
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/sl/10 available.pack
ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able

[2205]
Underfull \hbox (badness 1424) in paragraph at lines 7306--7309
[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to

[2206]
Underfull \hbox (badness 3219) in paragraph at lines 7378--7385
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/s
l/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-

Underfull \hbox (badness 5175) in paragraph at lines 7378--7385
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

Underfull \hbox (badness 1342) in paragraph at lines 7378--7385
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by

Underfull \hbox (badness 1596) in paragraph at lines 7378--7385
[][][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")[]
\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 type = "both" []\T1/ptm/m/n/10 will be silen
tly

Underfull \hbox (badness 2932) in paragraph at lines 7386--7389
[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/sl/10 type = "source" []\T1/p
tm/m/n/10 al-ways works pro-vided the pack-age con-tains no

[2207]
[2208]
Underfull \hbox (badness 1024) in paragraph at lines 7515--7518
[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/sl/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 , ] []\T1/
ptm/m/n/10 will

Underfull \hbox (badness 10000) in paragraph at lines 7548--7553
[][][]\T1/zi4/m/sl/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s
l/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,

[2209]
Underfull \hbox (badness 5133) in paragraph at lines 7607--7611
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each
 pack-age's

[2210]
[2211]
[2212]
[2213]
[2214]
[2215]
[2216]
[2217]
[2218]
[2219]
[2220]
Underfull \hbox (badness 10000) in paragraph at lines 8271--8273
[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/sl/10 methods(..)[]\T1/pt
m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class

[2221]
[2222]
[2223]
[2224]
[2225]
[2226]
[2227]
[2228] [2229]
[2230]
[2231]
[2232]
[2233]
Underfull \hbox (badness 2310) in paragraph at lines 9058--9063
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,

[2234]
[2235]
[2236]
[2237]
[2238]
[2239]
[2240]
[2241]
[2242]
Underfull \hbox (badness 1248) in paragraph at lines 9629--9633
[]\T1/zi4/m/sl/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the

[2243]
Underfull \hbox (badness 1789) in paragraph at lines 9707--9709
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the

[2244]
[2245]
[2246]
[2247]
Underfull \hbox (badness 2600) in paragraph at lines 9931--9934
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic;
 de-faults to

[2248]
[2249]
[2250]
[2251]
[2252]
[2253]
[2254]
[2255]
[2256]
Underfull \hbox (badness 1097) in paragraph at lines 10568--10571
[]\T1/ptm/m/n/10 The name []\T1/zi4/m/sl/10 "clipboard" []\T1/ptm/m/n/10 may al
so be used on Win-dows, in which case

[2257]
[2258]
Underfull \hbox (badness 3000) in paragraph at lines 10704--10709
[][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
sl/10 read.table[][][][]\T1/ptm/m/n/10 ;

[2259]
[2260]
[2261]
[2262]
[2263]
[2264]
[2265]
[2266]
[2267]
Underfull \hbox (badness 2134) in paragraph at lines 11299--11304
[][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
sl/10 write.table[][][][]\T1/ptm/m/n/10 ;

[2268]
Underfull \hbox (badness 10000) in paragraph at lines 11355--11360
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for


Underfull \hbox (badness 10000) in paragraph at lines 11355--11360
[]\T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 HKEY_C
LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/
10 ,

[2269]
[2270]
[2271]
[2272]
[2273]
[2274]
[2275]
[2276]
Underfull \hbox (badness 1824) in paragraph at lines 11853--11857
\T1/zi4/m/sl/10 / / en . wikipedia . org / w / index . php ? title = Roman _ nu
merals & oldid = 1188781837$[][]\T1/ptm/m/n/10 . Ac-cessed

[2277]
[2278]
[2279]
[2280]
[2281]
[2282]
[2283]
Underfull \hbox (badness 4060) in paragraph at lines 12299--12302
[]\T1/ptm/m/n/10 If `[]\T1/zi4/m/sl/10 --default-packages[]\T1/ptm/m/n/10 ' is 
not used, then []\T1/zi4/m/sl/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-
ment vari-able

Overfull \hbox (18.77168pt too wide) in paragraph at lines 12322--12322
 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 

[2284]
[2285]
[2286]
[2287]
Underfull \hbox (badness 2150) in paragraph at lines 12577--12579
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac
s / manual /

[2288]
[2289]
[2290]
[2291]
Underfull \hbox (badness 10000) in paragraph at lines 12797--12801
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/sl/10 stylepath []\T1/ptm/m/n/10 
is now taken from the en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 12830--12836
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a

[2292]
Underfull \hbox (badness 2762) in paragraph at lines 12845--12851
\T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin
ce 2018). Ei-ther set

[2293]
[2294]
Underfull \hbox (badness 1009) in paragraph at lines 13020--13032
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If

Underfull \hbox (badness 4779) in paragraph at lines 13060--13062
[]\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI ([]\T1/zi4/m/sl/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do
ws and

[2295]
Underfull \hbox (badness 1077) in paragraph at lines 13090--13097
\T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p
er-sonal' di-rec-tory, oth-er-wise to

[2296]
[2297]
[2298]
[2299]
[2300]
[2301]
Underfull \hbox (badness 3780) in paragraph at lines 13515--13521
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\
T1/zi4/m/sl/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via

[2302]
Underfull \hbox (badness 2635) in paragraph at lines 13533--13536
[]\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/sl/10 CRAN[]\T1/ptm/m/n/10 ' is treate
d spe-cially: the value is taken from the cur-rent set-ting of

[2303]
[2304]
[2305]
Underfull \hbox (badness 2302) in paragraph at lines 13743--13745
[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call

[2306]
[2307]
[2308]
[2309]
[2310]
Underfull \hbox (badness 4441) in paragraph at lines 14042--14047
[]\T1/ptm/m/n/10 logical; if []\T1/zi4/m/sl/10 TRUE []\T1/ptm/m/n/10 (de-fault)
, [][][]\T1/zi4/m/sl/10 deparse[][][](control = \T1/ptm/m/sl/10 control\T1/zi4/
m/sl/10 ) []\T1/ptm/m/n/10 will not have

Underfull \hbox (badness 5970) in paragraph at lines 14051--14054
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive

[2311]
[2312]
[2313]
[2314]
[2315]
[2316]
[2317]
Underfull \hbox (badness 2932) in paragraph at lines 14482--14489
[]\T1/ptm/m/n/10 If []\T1/zi4/m/sl/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa
ult) then the avail-able syn-tax ob-jects are con-sulted in turn,

Underfull \hbox (badness 1688) in paragraph at lines 14482--14489
\T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/sl/10 extension []\T1/ptm/m/n
/10 com-po-nent matches (as a reg-exp) the file name. Ob-

[2318]
[2319]
[2320]
[2321]
Underfull \hbox (badness 6510) in paragraph at lines 14794--14798
[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 is set 
to the com-mand []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men
t vari-able

[2322]
Underfull \hbox (badness 10000) in paragraph at lines 14801--14804
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / pubs . opengroup 
. org /

Underfull \hbox (badness 2245) in paragraph at lines 14801--14804
\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX

[2323]
[2324]
[2325]
[2326]
[2327]
[2328]
[2329]
[2330]
[2331]
[2332]
Underfull \hbox (badness 10000) in paragraph at lines 15474--15479
[]\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/sl/10 destdir []\T1/ptm/m/n/10 a
nd []\T1/zi4/m/sl/10 dependencies []\T1/ptm/m/n/10 to be passed to

Underfull \hbox (badness 3861) in paragraph at lines 15474--15479
[][][]\T1/zi4/m/sl/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 max_repo_cache_age [
]\T1/ptm/m/n/10 and

Underfull \hbox (badness 1052) in paragraph at lines 15480--15482
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See

Underfull \hbox (badness 10000) in paragraph at lines 15539--15542
[][][]\T1/zi4/m/sl/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/
sl/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download
.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][
][]\T1/ptm/m/n/10 ,

[2333]
[2334]
[2335]
[2336]
[2337]
[2338]
[2339]
[2340]
[2341]
[2342]
[2343]
[2344]
[2345]
[2346]
[2347]
[2348]) (./refman.ind

[2349]

[2350]

[2351]

[2352]

[2353]

[2354]

[2355]

[2356]

[2357]

[2358]

[2359]

[2360]

[2361]

[2362]

[2363]

[2364]

[2365]

[2366]

[2367]

[2368]

[2369]

[2370]

[2371]

[2372]

[2373]

[2374]

[2375]

[2376]

[2377]

[2378]

[2379]

[2380]

[2381]

[2382]

[2383]

[2384]

[2385]

[2386]

[2387]

[2388]

[2389]

[2390]

[2391]

[2392]

[2393]

[2394]

[2395]

[2396]

[2397]

[2398]

[2399]

[2400]

[2401]

[2402]

[2403]

[2404]

[2405]

[2406]

Overfull \hbox (33.3567pt too wide) in paragraph at lines 10031--10033
[]\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , 


[2407]

[2408]

[2409]

[2410]

[2411]

[2412]

Overfull \hbox (20.8567pt too wide) in paragraph at lines 11421--11423
[]\T1/zi4/m/it/10 R_AVAILABLE_PACKAGES_CACHE_CONTROL_MAX_AGE 

[2413]

[2414]

[2415]

[2416]

[2417]

[2418]

[2419]

[2420]

[2421]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 13281--13283
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends 

Overfull \hbox (5.8567pt too wide) in paragraph at lines 13283--13285
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results 


Overfull \hbox (5.8567pt too wide) in paragraph at lines 13285--13287
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings 

[2422]

[2423]

[2424]

[2425]

[2426]

[2427]

[2428]

[2429]

[2430]

[2431]) (./refman.aux)

LaTeX Font Warning: Some font shapes were not available, defaults substituted.

 )
(see the transcript file for additional information)
pdfTeX warning (dest): name{Rfn.write.matrix} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.knitr} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.restore} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.setup} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.ncols} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.mathjaxr} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do
es not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lmrob} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rlm} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.nlsList} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no
t exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rBind} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cBind} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no
t exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.roundX} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.base.Rdash.deprecated} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, 
replaced by a fixed one

 </tmp/texfonts/pk/ljfour/jknappen/ec/tctt1000.600pk> </tmp/texfonts/pk/ljfour/
jknappen/ec/tctt0900.600pk></usr/share/texlive/texmf-dist/fonts/type1/public/in
consolata/Inconsolata-zi4b.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/inconsolata/Inconsolata-zi4r.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cmextra/cmbsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmib10.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw
/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8
a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi8a.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/tex
mf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/urw/times/utmri8a.pfb>
Output written on refman.pdf (2464 pages, 6693820 bytes).
Transcript written on refman.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi
@setfilename R-admin.info
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode

(/build/reproducible-path/r-base-4.4.3/doc/manual/R-admin.t2d/pdf/xtr/R-admin.t
exi (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/build/reproducible-path/r-base-4.4.3/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, microtype, and turning on texinfo input format.)
Writing index file R-admin.vr
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/build/reproducible-path/r-base-4.4.3/doc/manual/version.texi) [1{/var/lib/tex
mf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
Writing index file R-admin.cp
Writing index file R-admin.en
[1] Chapter 2 [2] Cross reference values unknown; you must run TeX again.
[3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Chapter 3 [16]
[17] [18] Chapter 4 [19] [20] [21] Chapter 5 [22] Chapter 6 [23]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 1918--1918
 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[24] [25]
Underfull \hbox (badness 6842) in paragraph at lines 2150--2158
[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[26]
Overfull \hbox (37.93651pt too wide) in paragraph at lines 2224--2224
 []@texttt FLIBS = -L/Library/Frameworks/R.framework/Resources/lib -lgfortran -
lquadmath[] 
[27] [28]
Underfull \hbox (badness 10000) in paragraph at lines 2340--2345
@textrm (avoiding @texttt autoconf[]@textrm 's de-fault @texttt -g[]@textrm ). 
As from R 4.3.0, @texttt R CMD INSTALL[] @textrm and
[29] [30] [31]
Underfull \hbox (badness 10000) in paragraph at lines 2622--2628
 []@texttt "mac.binary"[]@textrm : lo-cated at @texttt bin/macosx/big-sur-arm64
/contrib/@textttsl 4.y[] @textrm or
[32]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 2676--2676
 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl libdir @textt
t --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 
Chapter 7 [33] [34] [35] Chapter 8 [36] Chapter 9 [37] [38] [39] Appendix A
[40] [41]
Overfull \hbox (49.43388pt too wide) in paragraph at lines 3247--3247
 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit --
disable-cpp[] 
[42] [43] [44]
Underfull \hbox (badness 10000) in paragraph at lines 3460--3462
[]@textrm Library @texttt libdeflate[] @textrm ([][]@texttt https://  github.  
com/  ebiggers/  libdeflate[][]@textrm ) is used by
[45]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 3557--3557
 []@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.322.b06-6.fc34.x86_6
4/jre[] 
[46] [47] [48] [49] [50] [51] [52] [53] [54] Appendix B [55] [56] [57] [58]
[59] [60] Appendix C [61] [62] [63] [64]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 4904--4904
 []@texttt -Werror=format-security -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSER
TIONS[] 
[65] [66]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 5104--5104
 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS:
kdenestmlcvb
 :: kdenestmlcvb[] 
[67]
Overfull \hbox (122.85329pt too wide) in paragraph at lines 5206--5206
 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/arm64/pcre2-10.44-da
rwin.20-arm64.tar.xz[] 

Overfull \hbox (105.60722pt too wide) in paragraph at lines 5208--5208
 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/arm64/xz-5.6.3-darwi
n.20-arm64.tar.xz[] 
[68]
Overfull \hbox (60.93126pt too wide) in paragraph at lines 5329--5329
 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.3-darwin.20
-arm64.tar.gz[] 
[69]
Overfull \hbox (32.18782pt too wide) in paragraph at lines 5336--5336
 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.3-darwin15.
6.tar.gz[] 

Overfull \hbox (170.15633pt too wide) in paragraph at lines 5366--5366
 []   @texttt could not create compact unwind for _arcoef_: registers 23 and 24
 not saved contiguously in frame[] 

Overfull \hbox (38.79282pt too wide) in paragraph at lines 5375--5376
[][][]@smallrm See [][]@smalltt https://  developer.  apple.  com/  documentati
on/  xcode/  notarizing_macos_software_before_distribution[][]@smallrm .| 
[70] [71] [72]
Overfull \hbox (72.77429pt too wide) in paragraph at lines 5643--5643
[][][][][]@smalltt https://  cran.  r-project.  org/  bin/  macosx/  RMacOSX-FA
Q.  html#  Which-BLAS-is-used-and-how-can-it-be-changed_003f[][]| 
[73]
Overfull \hbox (9.18199pt too wide) in paragraph at lines 1--5676
@texttt OpenMathLib/  OpenBLAS/  releases[][]@textrm ) by sym-link-ing @texttt 
/opt/OpenBLAS/lib/libopenblas.dylib[]
[74]
Underfull \hbox (badness 10000) in paragraph at lines 5751--5762
@texttt zulu-community/  ?  os=macos&  architecture=arm-64-bit&  package=jdk[][
] @textrm and from
[75] [76]
Overfull \hbox (48.12035pt too wide) in paragraph at lines 5912--5912
 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libgfortran.5.
dylib \[] 

Overfull \hbox (48.12035pt too wide) in paragraph at lines 5917--5917
 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libquadmath.0.
dylib \[] 

Overfull \hbox (25.1256pt too wide) in paragraph at lines 5935--5935
 []@texttt PKG_LIBS = /usr/local/llvm/lib/libc++.a /usr/local/llvm/lib/libc++ab
i.a[] 

Overfull \hbox (72.42863pt too wide) in paragraph at lines 5958--5958
 []@texttt FC="/opt//gfortran/bin/gfortran -arch x86_64 -mtune=native -mmacosx-
version-min=11"[] 
[77] [78] (Function and variable index) [79]
No file R-admin.vrs.
(Concept index) [80]
No file R-admin.cps.
(Environment variable index) [81]
No file R-admin.ens.
[82] )
(see the transcript file for additional information)
pdfTeX warning (dest): name{\040Tcl/Tk\040headers\040and\040libraries} has been
 referenced but does not exist, replaced by a fixed one

</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type
1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public
/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmt
i10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr
/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-admin.pdf (85 pages, 472861 bytes).
Transcript written on R-admin.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode

(/build/reproducible-path/r-base-4.4.3/doc/manual/R-admin.t2d/pdf/xtr/R-admin.t
exi (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/build/reproducible-path/r-base-4.4.3/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, microtype, and turning on texinfo input format.)
Writing index file R-admin.vr
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/build/reproducible-path/r-base-4.4.3/doc/manual/version.texi) [1{/var/lib/tex
mf/fonts/map/pdftex/updmap/pdftex.map}] [2]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-admin.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-admin.toc [-1] [-2])
[-3] (/build/reproducible-path/r-base-4.4.3/doc/manual/R-admin.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-admin.toc) Chapter 1
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-admin.aux)
Writing index file R-admin.cp
Writing index file R-admin.en
[1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15]
Chapter 3 [16] [17] [18] Chapter 4 [19] [20] [21] Chapter 5 [22] Chapter 6
[23]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 1918--1918
 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[24] [25]
Underfull \hbox (badness 6842) in paragraph at lines 2150--2158
[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[26]
Overfull \hbox (37.93651pt too wide) in paragraph at lines 2224--2224
 []@texttt FLIBS = -L/Library/Frameworks/R.framework/Resources/lib -lgfortran -
lquadmath[] 
[27] [28]
Underfull \hbox (badness 10000) in paragraph at lines 2340--2345
@textrm (avoiding @texttt autoconf[]@textrm 's de-fault @texttt -g[]@textrm ). 
As from R 4.3.0, @texttt R CMD INSTALL[] @textrm and
[29] [30] [31]
Underfull \hbox (badness 10000) in paragraph at lines 2622--2628
 []@texttt "mac.binary"[]@textrm : lo-cated at @texttt bin/macosx/big-sur-arm64
/contrib/@textttsl 4.y[] @textrm or
[32]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 2676--2676
 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl libdir @textt
t --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 
Chapter 7 [33] [34] [35] Chapter 8 [36] Chapter 9 [37] [38] [39] Appendix A
[40] [41]
Overfull \hbox (49.43388pt too wide) in paragraph at lines 3247--3247
 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit --
disable-cpp[] 
[42] [43] [44]
Underfull \hbox (badness 10000) in paragraph at lines 3460--3462
[]@textrm Library @texttt libdeflate[] @textrm ([][]@texttt https://  github.  
com/  ebiggers/  libdeflate[][]@textrm ) is used by
[45]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 3557--3557
 []@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.322.b06-6.fc34.x86_6
4/jre[] 
[46] [47] [48] [49] [50] [51] [52] [53] [54] Appendix B [55] [56] [57] [58]
[59] [60] Appendix C [61] [62] [63] [64]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 4904--4904
 []@texttt -Werror=format-security -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSER
TIONS[] 
[65] [66]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 5104--5104
 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS:
kdenestmlcvb
 :: kdenestmlcvb[] 
[67]
Overfull \hbox (122.85329pt too wide) in paragraph at lines 5206--5206
 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/arm64/pcre2-10.44-da
rwin.20-arm64.tar.xz[] 

Overfull \hbox (105.60722pt too wide) in paragraph at lines 5208--5208
 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/arm64/xz-5.6.3-darwi
n.20-arm64.tar.xz[] 
[68] l.5255: Undefined cross reference ` Tcl/Tk headers and libraries-snt'.
l.5255: Undefined cross reference ` Tcl/Tk headers and libraries-snt'.
l.5255: Undefined cross reference ` Tcl/Tk headers and libraries-pg'.
Overfull \hbox (60.93126pt too wide) in paragraph at lines 5329--5329
 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.3-darwin.20
-arm64.tar.gz[] 
[69]
Overfull \hbox (32.18782pt too wide) in paragraph at lines 5336--5336
 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.3-darwin15.
6.tar.gz[] 

Overfull \hbox (170.15633pt too wide) in paragraph at lines 5366--5366
 []   @texttt could not create compact unwind for _arcoef_: registers 23 and 24
 not saved contiguously in frame[] 

Overfull \hbox (38.79282pt too wide) in paragraph at lines 5375--5376
[][][]@smallrm See [][]@smalltt https://  developer.  apple.  com/  documentati
on/  xcode/  notarizing_macos_software_before_distribution[][]@smallrm .| 
[70] [71] [72]
Overfull \hbox (72.77429pt too wide) in paragraph at lines 5643--5643
[][][][][]@smalltt https://  cran.  r-project.  org/  bin/  macosx/  RMacOSX-FA
Q.  html#  Which-BLAS-is-used-and-how-can-it-be-changed_003f[][]| 
[73]
Overfull \hbox (9.18199pt too wide) in paragraph at lines 1--5676
@texttt OpenMathLib/  OpenBLAS/  releases[][]@textrm ) by sym-link-ing @texttt 
/opt/OpenBLAS/lib/libopenblas.dylib[]
[74]
Underfull \hbox (badness 10000) in paragraph at lines 5751--5762
@texttt zulu-community/  ?  os=macos&  architecture=arm-64-bit&  package=jdk[][
] @textrm and from
[75] [76]
Overfull \hbox (48.12035pt too wide) in paragraph at lines 5912--5912
 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libgfortran.5.
dylib \[] 

Overfull \hbox (48.12035pt too wide) in paragraph at lines 5917--5917
 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libquadmath.0.
dylib \[] 

Overfull \hbox (25.1256pt too wide) in paragraph at lines 5935--5935
 []@texttt PKG_LIBS = /usr/local/llvm/lib/libc++.a /usr/local/llvm/lib/libc++ab
i.a[] 

Overfull \hbox (72.42863pt too wide) in paragraph at lines 5958--5958
 []@texttt FC="/opt//gfortran/bin/gfortran -arch x86_64 -mtune=native -mmacosx-
version-min=11"[] 
[77] [78] (Function and variable index) [79]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-admin.vrs) (Concept index)
[80] (/build/reproducible-path/r-base-4.4.3/doc/manual/R-admin.cps)
(Environment variable index) [81]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-admin.ens) [82] )
(see the transcript file for additional information)
pdfTeX warning (dest): name{\040Tcl/Tk\040headers\040and\040libraries} has been
 referenced but does not exist, replaced by a fixed one

</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr
/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-admin.pdf (87 pages, 515677 bytes).
Transcript written on R-admin.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode

(/build/reproducible-path/r-base-4.4.3/doc/manual/R-admin.t2d/pdf/xtr/R-admin.t
exi (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/build/reproducible-path/r-base-4.4.3/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, microtype, and turning on texinfo input format.)
Writing index file R-admin.vr
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/build/reproducible-path/r-base-4.4.3/doc/manual/version.texi) [1{/var/lib/tex
mf/fonts/map/pdftex/updmap/pdftex.map}] [2]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-admin.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-admin.toc [-1] [-2])
[-3] (/build/reproducible-path/r-base-4.4.3/doc/manual/R-admin.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-admin.toc) Chapter 1
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-admin.aux)
Writing index file R-admin.cp
Writing index file R-admin.en
[1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15]
Chapter 3 [16] [17] [18] Chapter 4 [19] [20] [21] Chapter 5 [22] Chapter 6
[23]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 1918--1918
 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[24] [25]
Underfull \hbox (badness 6842) in paragraph at lines 2150--2158
[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[26]
Overfull \hbox (37.93651pt too wide) in paragraph at lines 2224--2224
 []@texttt FLIBS = -L/Library/Frameworks/R.framework/Resources/lib -lgfortran -
lquadmath[] 
[27] [28]
Underfull \hbox (badness 10000) in paragraph at lines 2340--2345
@textrm (avoiding @texttt autoconf[]@textrm 's de-fault @texttt -g[]@textrm ). 
As from R 4.3.0, @texttt R CMD INSTALL[] @textrm and
[29] [30] [31]
Underfull \hbox (badness 10000) in paragraph at lines 2622--2628
 []@texttt "mac.binary"[]@textrm : lo-cated at @texttt bin/macosx/big-sur-arm64
/contrib/@textttsl 4.y[] @textrm or
[32]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 2676--2676
 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl libdir @textt
t --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 
Chapter 7 [33] [34] [35] Chapter 8 [36] Chapter 9 [37] [38] [39] Appendix A
[40] [41]
Overfull \hbox (49.43388pt too wide) in paragraph at lines 3247--3247
 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit --
disable-cpp[] 
[42] [43] [44]
Underfull \hbox (badness 10000) in paragraph at lines 3460--3462
[]@textrm Library @texttt libdeflate[] @textrm ([][]@texttt https://  github.  
com/  ebiggers/  libdeflate[][]@textrm ) is used by
[45]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 3557--3557
 []@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.322.b06-6.fc34.x86_6
4/jre[] 
[46] [47] [48] [49] [50] [51] [52] [53] [54] Appendix B [55] [56] [57] [58]
[59] [60] Appendix C [61] [62] [63] [64]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 4904--4904
 []@texttt -Werror=format-security -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSER
TIONS[] 
[65] [66]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 5104--5104
 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS:
kdenestmlcvb
 :: kdenestmlcvb[] 
[67]
Overfull \hbox (122.85329pt too wide) in paragraph at lines 5206--5206
 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/arm64/pcre2-10.44-da
rwin.20-arm64.tar.xz[] 

Overfull \hbox (105.60722pt too wide) in paragraph at lines 5208--5208
 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/arm64/xz-5.6.3-darwi
n.20-arm64.tar.xz[] 
[68] l.5255: Undefined cross reference ` Tcl/Tk headers and libraries-snt'.
l.5255: Undefined cross reference ` Tcl/Tk headers and libraries-snt'.
l.5255: Undefined cross reference ` Tcl/Tk headers and libraries-pg'.
Overfull \hbox (60.93126pt too wide) in paragraph at lines 5329--5329
 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.3-darwin.20
-arm64.tar.gz[] 
[69]
Overfull \hbox (32.18782pt too wide) in paragraph at lines 5336--5336
 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.3-darwin15.
6.tar.gz[] 

Overfull \hbox (170.15633pt too wide) in paragraph at lines 5366--5366
 []   @texttt could not create compact unwind for _arcoef_: registers 23 and 24
 not saved contiguously in frame[] 

Overfull \hbox (38.79282pt too wide) in paragraph at lines 5375--5376
[][][]@smallrm See [][]@smalltt https://  developer.  apple.  com/  documentati
on/  xcode/  notarizing_macos_software_before_distribution[][]@smallrm .| 
[70] [71] [72]
Overfull \hbox (72.77429pt too wide) in paragraph at lines 5643--5643
[][][][][]@smalltt https://  cran.  r-project.  org/  bin/  macosx/  RMacOSX-FA
Q.  html#  Which-BLAS-is-used-and-how-can-it-be-changed_003f[][]| 
[73]
Overfull \hbox (9.18199pt too wide) in paragraph at lines 1--5676
@texttt OpenMathLib/  OpenBLAS/  releases[][]@textrm ) by sym-link-ing @texttt 
/opt/OpenBLAS/lib/libopenblas.dylib[]
[74]
Underfull \hbox (badness 10000) in paragraph at lines 5751--5762
@texttt zulu-community/  ?  os=macos&  architecture=arm-64-bit&  package=jdk[][
] @textrm and from
[75] [76]
Overfull \hbox (48.12035pt too wide) in paragraph at lines 5912--5912
 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libgfortran.5.
dylib \[] 

Overfull \hbox (48.12035pt too wide) in paragraph at lines 5917--5917
 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libquadmath.0.
dylib \[] 

Overfull \hbox (25.1256pt too wide) in paragraph at lines 5935--5935
 []@texttt PKG_LIBS = /usr/local/llvm/lib/libc++.a /usr/local/llvm/lib/libc++ab
i.a[] 

Overfull \hbox (72.42863pt too wide) in paragraph at lines 5958--5958
 []@texttt FC="/opt//gfortran/bin/gfortran -arch x86_64 -mtune=native -mmacosx-
version-min=11"[] 
[77] [78] (Function and variable index) [79]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-admin.vrs) (Concept index)
[80] (/build/reproducible-path/r-base-4.4.3/doc/manual/R-admin.cps)
(Environment variable index) [81]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-admin.ens) [82] )
(see the transcript file for additional information)
pdfTeX warning (dest): name{\040Tcl/Tk\040headers\040and\040libraries} has been
 referenced but does not exist, replaced by a fixed one

</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr
/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-admin.pdf (87 pages, 515703 bytes).
Transcript written on R-admin.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi
@setfilename R-data.info
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode

(/build/reproducible-path/r-base-4.4.3/doc/manual/R-data.t2d/pdf/xtr/R-data.tex
i (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/build/reproducible-path/r-base-4.4.3/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, microtype, and turning on texinfo input format.)
Writing index file R-data.vr
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/build/reproducible-path/r-base-4.4.3/doc/manual/version.texi) [1{/var/lib/tex
mf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) [1]
Chapter 1 [2]
Writing index file R-data.cp
Cross reference values unknown; you must run TeX again. [3] [4] [5]
Underfull \hbox (badness 10000) in paragraph at lines 442--445
[]@textrm Function @texttt write.matrix[] @textrm in pack-age [][]@textbf MASS 
@textrm (@texttt https://  CRAN.  R-project.  org/

Underfull \hbox (badness 10000) in paragraph at lines 453--457
[]@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore
ign @textrm (@texttt https://  CRAN.  R-project.  org/
[6] Chapter 2 [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Chapter 4
[16]
Underfull \hbox (badness 10000) in paragraph at lines 1227--1239
@textrm (@texttt https://  www.  ibm.  com/  products/  informix[]@textrm )[]; 
[][]Oracle (@texttt https://  www.  oracle.  com[]@textrm )[];

Underfull \hbox (badness 10000) in paragraph at lines 1227--1239
@textrm (@texttt https://  www.  microsoft.  com/  sql-server/  []@textrm )[] o
n Win-dows) and aca-demic and
[17] [18] [19] [20] [21] [22] Chapter 5 [23]
Underfull \hbox (badness 10000) in paragraph at lines 1800--1806
[]@textrm Packages [][]@textbf h5 @textrm (@texttt https://  CRAN.  R-project. 
 org/  package=h5[]@textrm )[], Bio-con-duc-tor's @textbf rhdf5@textrm ,
Chapter 6 [24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9
[31] Appendix A [32] (Function and variable index) [33]
No file R-data.vrs.
(Concept index) [34]
No file R-data.cps.
[35] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt1
0.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-data.pdf (38 pages, 266572 bytes).
Transcript written on R-data.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode

(/build/reproducible-path/r-base-4.4.3/doc/manual/R-data.t2d/pdf/xtr/R-data.tex
i (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/build/reproducible-path/r-base-4.4.3/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, microtype, and turning on texinfo input format.)
Writing index file R-data.vr
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/build/reproducible-path/r-base-4.4.3/doc/manual/version.texi) [1{/var/lib/tex
mf/fonts/map/pdftex/updmap/pdftex.map}] [2]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-data.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-data.toc [-1]) [-2]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-data.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-data.toc)
(Acknowledgements) (/build/reproducible-path/r-base-4.4.3/doc/manual/R-data.aux
) [1] Chapter 1 [2]
Writing index file R-data.cp
[3] [4] [5]
Underfull \hbox (badness 10000) in paragraph at lines 442--445
[]@textrm Function @texttt write.matrix[] @textrm in pack-age [][]@textbf MASS 
@textrm (@texttt https://  CRAN.  R-project.  org/

Underfull \hbox (badness 10000) in paragraph at lines 453--457
[]@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore
ign @textrm (@texttt https://  CRAN.  R-project.  org/
[6] Chapter 2 [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Chapter 4
[16]
Underfull \hbox (badness 10000) in paragraph at lines 1227--1239
@textrm (@texttt https://  www.  ibm.  com/  products/  informix[]@textrm )[]; 
[][]Oracle (@texttt https://  www.  oracle.  com[]@textrm )[];

Underfull \hbox (badness 10000) in paragraph at lines 1227--1239
@textrm (@texttt https://  www.  microsoft.  com/  sql-server/  []@textrm )[] o
n Win-dows) and aca-demic and
[17] [18] [19] [20] [21] [22] Chapter 5 [23]
Underfull \hbox (badness 10000) in paragraph at lines 1800--1806
[]@textrm Packages [][]@textbf h5 @textrm (@texttt https://  CRAN.  R-project. 
 org/  package=h5[]@textrm )[], Bio-con-duc-tor's @textbf rhdf5@textrm ,
Chapter 6 [24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9
[31] Appendix A [32] (Function and variable index) [33]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-data.vrs [34])
(Concept index) [35]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-data.cps) [36] [37] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-data.pdf (41 pages, 302824 bytes).
Transcript written on R-data.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode

(/build/reproducible-path/r-base-4.4.3/doc/manual/R-data.t2d/pdf/xtr/R-data.tex
i (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/build/reproducible-path/r-base-4.4.3/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, microtype, and turning on texinfo input format.)
Writing index file R-data.vr
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/build/reproducible-path/r-base-4.4.3/doc/manual/version.texi) [1{/var/lib/tex
mf/fonts/map/pdftex/updmap/pdftex.map}] [2]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-data.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-data.toc [-1]) [-2]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-data.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-data.toc)
(Acknowledgements) (/build/reproducible-path/r-base-4.4.3/doc/manual/R-data.aux
) [1] Chapter 1 [2]
Writing index file R-data.cp
[3] [4] [5]
Underfull \hbox (badness 10000) in paragraph at lines 442--445
[]@textrm Function @texttt write.matrix[] @textrm in pack-age [][]@textbf MASS 
@textrm (@texttt https://  CRAN.  R-project.  org/

Underfull \hbox (badness 10000) in paragraph at lines 453--457
[]@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore
ign @textrm (@texttt https://  CRAN.  R-project.  org/
[6] Chapter 2 [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Chapter 4
[16]
Underfull \hbox (badness 10000) in paragraph at lines 1227--1239
@textrm (@texttt https://  www.  ibm.  com/  products/  informix[]@textrm )[]; 
[][]Oracle (@texttt https://  www.  oracle.  com[]@textrm )[];

Underfull \hbox (badness 10000) in paragraph at lines 1227--1239
@textrm (@texttt https://  www.  microsoft.  com/  sql-server/  []@textrm )[] o
n Win-dows) and aca-demic and
[17] [18] [19] [20] [21] [22] Chapter 5 [23]
Underfull \hbox (badness 10000) in paragraph at lines 1800--1806
[]@textrm Packages [][]@textbf h5 @textrm (@texttt https://  CRAN.  R-project. 
 org/  package=h5[]@textrm )[], Bio-con-duc-tor's @textbf rhdf5@textrm ,
Chapter 6 [24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9
[31] Appendix A [32] (Function and variable index) [33]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-data.vrs [34])
(Concept index) [35]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-data.cps) [36] [37] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-data.pdf (41 pages, 302830 bytes).
Transcript written on R-data.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi
@setfilename R-exts.info
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode

(/build/reproducible-path/r-base-4.4.3/doc/manual/R-exts.t2d/pdf/xtr/R-exts.tex
i (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/build/reproducible-path/r-base-4.4.3/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, microtype, and turning on texinfo input format.)
Writing index file R-exts.vr
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/build/reproducible-path/r-base-4.4.3/doc/manual/version.texi) [1{/var/lib/tex
mf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1
[1]
Writing index file R-exts.cp
Cross reference values unknown; you must run TeX again. [2] [3] [4] [5]
[6]
Underfull \hbox (badness 10000) in paragraph at lines 516--519
[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[7] [8] [9] [10] [11] [12] [13] [14] [15] [16]
Underfull \hbox (badness 10000) in paragraph at lines 1326--1327
@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

Underfull \hbox (badness 10000) in paragraph at lines 1327--1328
 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

Underfull \hbox (badness 10000) in paragraph at lines 1330--1332
@texttt R_MAKEVARS_USER[]@textrm ,  @texttt ~/.R/Makevars-

Underfull \hbox (badness 10000) in paragraph at lines 1332--1334
 @texttt ~/.R/Makevars.win64[]@textrm ,

Underfull \hbox (badness 10000) in paragraph at lines 1340--1341
@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

Underfull \hbox (badness 10000) in paragraph at lines 1341--1342
 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

Underfull \hbox (badness 10000) in paragraph at lines 1344--1346
@texttt R_MAKEVARS_USER[]@textrm ,  @texttt ~/.R/Makevars-

Underfull \hbox (badness 10000) in paragraph at lines 1346--1348
 @texttt ~/.R/Makevars.win64[]@textrm ,
[17] [18] [19] [20]
Overfull \hbox (95.42339pt too wide) in paragraph at lines 1610--1610
 []                  @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec"
, "--no-test-load")[] 

Overfull \hbox (72.42863pt too wide) in paragraph at lines 1611--1611
 []        @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL
, quiet = TRUE)[] 

Overfull \hbox (20.69044pt too wide) in paragraph at lines 1612--1612
 []        @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata.
rdb"))[] 
[21]
Underfull \hbox (badness 10000) in paragraph at lines 1643--1650
@texttt org/  package=amap[]@textrm )[]), Python or Tcl ([][]@textbf Simile @te
xtrm (@texttt https://  CRAN.  R-project.  org/
[22] [23] [24] [25] [26]
Overfull \hbox (32.18782pt too wide) in paragraph at lines 2049--2049
 []@texttt $ pkg-config --exists 
libtiff-4 >= 4.1.0
 --print-errors # check the status[] 
[27] [28] [29]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 2293--2293
 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[30] [31] [32] [33] [34]
Overfull \hbox (67.78206pt too wide) in paragraph at lines 2700--2700
 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

Overfull \hbox (53.60722pt too wide) in paragraph at lines 2702--2702
 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[35] [36]
Overfull \hbox (16.92342pt too wide) in paragraph at lines 2840--2840
 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[37] [38] [39]
Underfull \hbox (badness 7221) in paragraph at lines 3052--3058
[][][]@smallrm See [][]@smalltt https://  isocpp.  org/  std/  standing-documen
ts/  sd-6-sg10-feature-test-recommendations[][] @smallrm or
[40]
Overfull \hbox (60.93126pt too wide) in paragraph at lines 3139--3139
 []            @texttt CXX="$(CXX17) $(CXX17STD)" CXXFLAGS="$(CXX17FLAGS) $(CXX
17PICFLAGS)")[] 
[41] [42] [43]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 3394--3394
 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin
/cmake; fi[] 
[44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58]
[59] [60] [61]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 4794--4794
 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s
pline)[] 
[62] [63] [64]
Overfull \hbox (81.29893pt too wide) in paragraph at lines 5030--5030
 []         @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB
ILITY)" \[] 

Overfull \hbox (59.61772pt too wide) in paragraph at lines 5049--5049
 []@texttt CXXFLAGS = ^^R"${RBIN}" CMD config CXXFLAGS^^R ^^R"${RBIN}" CMD conf
ig CXXPICFLAGS^^R[] 
[65] [66] [67] [68] [69] [70]
Overfull \hbox (53.86903pt too wide) in paragraph at lines 5533--5533
 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[] 

Overfull \hbox (48.12035pt too wide) in paragraph at lines 5535--5535
 []  @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse 
= "."))[] 

Overfull \hbox (65.36641pt too wide) in paragraph at lines 5536--5536
 []  @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[] 
[71]
Overfull \hbox (76.86378pt too wide) in paragraph at lines 5551--5551
 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor 
version 52.0[] 
[72] [73] [74] [75] [76]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 5931--5931
 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[77] [78]
Underfull \hbox (badness 10000) in paragraph at lines 6101--6104
 @texttt gcc/  C-Extensions.  html[][] @textrm and [][]@texttt https://  gcc.  
gnu.  org/  onlinedocs/  gcc/
[79]
Overfull \hbox (19.3769pt too wide) in paragraph at lines 6187--6187
 []@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall
oc[] 
[80] [81]
Overfull \hbox (53.86903pt too wide) in paragraph at lines 6333--6333
 []@texttt 
register
 storage class specifier is deprecated and incompatible with C++17[] 
[82]
Overfull \hbox (13.62822pt too wide) in paragraph at lines 6398--6398
 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__)
)[] 
[83]
Overfull \hbox (48.12035pt too wide) in paragraph at lines 6475--6475
 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS:
kdenestmlcvb
 :: kdenestmlcvb[] 

Overfull \hbox (25.1256pt too wide) in paragraph at lines 6487--6487
 []@texttt warning: argument 1 value 
18446744073709551615
 exceeds maximum object[] 

Overfull \hbox (94.10985pt too wide) in paragraph at lines 6502--6502
 []    @texttt error("Actual: %0.f; Expected %0.f\n", (double) XLENGTH(Robj), (
double) nelem);[] 
[84]
Underfull \hbox (badness 10000) in paragraph at lines 6553--6554
[][][]@smallrm See [][]@smalltt https://  prereleases.  llvm.  org/  11.  0.  0
/  rc2/  tools/  clang/  docs/  ReleaseNotes.  html#
[85] [86] [87] [88] [89] [90]
Overfull \hbox (19.3769pt too wide) in paragraph at lines 7054--7054
 []@texttt #define dngettext(pkg, String, StringP, N) (N == 1 ? String : String
P)[] 
[91] [92] Chapter 2 [93] [94] [95] [96] [97] [98] [99] [100] [101] [102]
[103] [104] [105] [106]
Underfull \hbox (badness 10000) in paragraph at lines 8330--8337
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[107] [108] [109]
Underfull \hbox (badness 10000) in paragraph at lines 8542--8547
 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt
 TRUE[] @textit and
[110] [111] [112] Chapter 3 [113] [114] [115] [116] [117] [118] [119]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 9313--9313
 []@texttt 5497      1.9783  R                        findVarLocInFrame.part.0.
lto_priv.0[] 
[120] Chapter 4 [121] [122] [123]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 9585--9585
 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[124]
Overfull \hbox (25.25755pt too wide) in paragraph at lines 9626--9626
 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[125]
Overfull \hbox (20.53261pt too wide) in paragraph at lines 9730--9730
 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

Overfull \hbox (38.96663pt too wide) in paragraph at lines 9760--9769
[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[126] [127] [128] [129]
Underfull \hbox (badness 10000) in paragraph at lines 10032--10037
@smalltt developer.  apple.  com/  documentation/  xcode/  diagnosing-memory-th
read-and-crash-issues-early[][]@smallrm .

Underfull \hbox (badness 10000) in paragraph at lines 10030--10043
@texttt controlling-code-generation[][]@textrm , [][]@texttt https://  clang.  
llvm.  org/  docs/  AddressSanitizer.

Overfull \hbox (48.90796pt too wide) in paragraph at lines 10047--10048
[][][]@smallrm see [][]@smalltt https://  llvm.  org/  devmtg/  2014-04/  PDFs/
  LightningTalks/  EuroLLVM%202014%20--%20container%20overflow.
[130] [131]
Overfull \hbox (78.17732pt too wide) in paragraph at lines 10196--10196
 []@texttt setenv ASAN_OPTIONS 
alloc_dealloc_mismatch=0:detect_leaks=0:detect_odr_violation=0
[] 

Overfull \hbox (32.81921pt too wide) in paragraph at lines 10221--10224
[][]@smalltt https://  developer.  apple.  com/  documentation/  xcode/  diagno
sing-memory-thread-and-crash-issues-early[][]@smallrm .| 

Overfull \hbox (33.15736pt too wide) in paragraph at lines 10234--10237
[]@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]
[132] [133]
Underfull \hbox (badness 10000) in paragraph at lines 10333--10337
[][]@texttt https://  blog.  llvm.  org/  2011/  05/  what-every-c-programmer-s
hould-know.  html[][]

Overfull \hbox (112.66945pt too wide) in paragraph at lines 10349--10349
 []@texttt CC = clang -fsanitize=undefined -fno-sanitize=float-divide-by-zero -
fno-omit-frame-pointer[] 

Overfull \hbox (170.15633pt too wide) in paragraph at lines 10350--10350
 []@texttt CXX = clang++ -fsanitize=undefined -fno-sanitize=float-divide-by-zer
o -fno-omit-frame-pointer -frtti[] 

Overfull \hbox (181.6537pt too wide) in paragraph at lines 10353--10353
 []@texttt SAN_LIBS = $(UBSAN_DIR)/libclang_rt.ubsan_standalone.a $(UBSAN_DIR)/
libclang_rt.ubsan_standalone_cxx.a[] 

Overfull \hbox (37.93651pt too wide) in paragraph at lines 10361--10361
 []@texttt SAN_LIBS = -L$(UBSAN_DIR) -Wl,-rpath,$(UBSAN_DIR) -lclang_rt.ubsan_s
tandalone[] 

Overfull \hbox (2.03816pt too wide) in paragraph at lines 10405--10409
[]@textrm See [][]@texttt https://  gcc.  gnu.  org/  onlinedocs/  gcc-10.  1. 
 0/  gcc/  Static-Analyzer-Options.
[134]
Overfull \hbox (72.42863pt too wide) in paragraph at lines 10428--10428
 []@texttt Fortran runtime error: Index 
1
 of dimension 1 of array 
x
 above upper bound of 0[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10473--10473
 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10476--10476
 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[135] [136]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 10555--10555
 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[137] [138] [139]
Underfull \hbox (badness 10000) in paragraph at lines 10798--10800
[][][]@smallrm See [][]@smalltt https://  svn.  r-project.  org/  R-dev-web/  t
runk/  CRAN/  QA/  Simon/  R-build/  fixpathR[][]@smallrm :
[140]
Overfull \hbox (124.16682pt too wide) in paragraph at lines 10865--10865
 []@texttt boot.f:61: warning: type of 
ddot
 does not match original declaration [-Wlto-type-mismatch][] 

Overfull \hbox (147.16158pt too wide) in paragraph at lines 10884--10884
 []@texttt rkpk2.f:77:5: warning: type of 
dstup
 does not match original declaration [-Wlto-type-mismatch][] 

Overfull \hbox (141.41289pt too wide) in paragraph at lines 10895--10895
 []@texttt reg.f:78:33: warning: type of 
dqrdc
 does not match original declaration [-Wlto-type-mismatch][] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10915--10915
 []                                                                        @tex
ttt 1[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10924--10924
 []                                                                        @tex
ttt 1[] 

Overfull \hbox (43.6852pt too wide) in paragraph at lines 10925--10925
 []@texttt Warning: Type mismatch in argument 
jpvt
 at (1); passed REAL(8) to INTEGER(4)[] 
[141] Chapter 5 [142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
[152]
Overfull \hbox (30.87428pt too wide) in paragraph at lines 11741--11741
 []                      @texttt double *w, int *iper, double *span, double *al
pha,[] 

Overfull \hbox (51.66371pt too wide) in paragraph at lines 11805--11805
 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[] 
[153] [154]
Overfull \hbox (60.93126pt too wide) in paragraph at lines 11969--11969
 []  @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n
a_omit_xts");[] 
[155] [156] [157] [158] [159] [160]
Overfull \hbox (37.93651pt too wide) in paragraph at lines 12407--12407
 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 13278--13278
 []    @texttt if(ign == NA_LOGICAL) error("
ignore_quotes
 must be TRUE or FALSE");[] 
[172]
Underfull \hbox (badness 10000) in paragraph at lines 13428--13432
[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[173] [174] [175] [176] [177] [178] [179]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 13992--13992
 []    @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[] 
[180] [181]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 14116--14116
 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 14121--14121
 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[182]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 14176--14176
 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 14189--14189
 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[183]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 14288--14288
 []        @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV
alue));[] 
[184] [185]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 14437--14437
 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[186]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 14528--14528
 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[187] [188]
Overfull \hbox (72.42863pt too wide) in paragraph at lines 14623--14623
 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
_ANY} cetype_t;[] 
Chapter 6 [189] [190] [191] [192] [193] [194] [195] [196] [197]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 15441--15441
 []        @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term
inator[] 

Underfull \hbox (badness 10000) in paragraph at lines 15459--15464
@texttt com/  content/  www/  us/  en/  docs/  fortran-compiler/  developer-gui
de-reference/
[198] [199] [200] [201] [202] [203] [204] [205] [206] [207]
Underfull \hbox (badness 10000) in paragraph at lines 16200--16204
 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na
.last, decreasing)[]@textrm .
[208] Warning: unbalanced parentheses in @def... [209] [210]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 16397--16397
 []                     @texttt SEXP (*hndlr)(SEXP cond, void *hdata), void *hd
ata);[] 

Overfull \hbox (66.67995pt too wide) in paragraph at lines 16404--16404
 []                               @texttt SEXP (*hndlr)(SEXP cond, void *hdata)
, void *hdata)[] 

Overfull \hbox (26.43913pt too wide) in paragraph at lines 16433--16433
 []                     @texttt void (*clean)(void *data, Rboolean jump), void 
*cdata,[] 
[211] [212] [213] [214] [215] Chapter 7 [216] [217] Chapter 8 [218] [219]
[220]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 17198--17198
 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was built with a s
tatic libR[] 
[221]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 17241--17241
 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

Overfull \hbox (55.18257pt too wide) in paragraph at lines 17256--17256
 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[222] [223] [224] [225] [226] [227] [228] [229] [230]
(Function and variable index) [231]
No file R-exts.vrs.
(Concept index) [232]
No file R-exts.cps.
[233] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmss10.pfb></usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmsy9.pfb></usr/share/texlive/texmf-dist/fonts/type1/publ
ic/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt
12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pf
b>
Output written on R-exts.pdf (236 pages, 1003103 bytes).
Transcript written on R-exts.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode

(/build/reproducible-path/r-base-4.4.3/doc/manual/R-exts.t2d/pdf/xtr/R-exts.tex
i (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/build/reproducible-path/r-base-4.4.3/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, microtype, and turning on texinfo input format.)
Writing index file R-exts.vr
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/build/reproducible-path/r-base-4.4.3/doc/manual/version.texi) [1{/var/lib/tex
mf/fonts/map/pdftex/updmap/pdftex.map}] [2]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-exts.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-exts.toc [-1] [-2] [-3]
[-4]) [-5] (/build/reproducible-path/r-base-4.4.3/doc/manual/R-exts.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-exts.toc)
(Acknowledgements) (/build/reproducible-path/r-base-4.4.3/doc/manual/R-exts.aux
) Chapter 1 [1]
Writing index file R-exts.cp
[2] [3] [4] [5] [6]
Underfull \hbox (badness 10000) in paragraph at lines 516--519
[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[7] [8] [9] [10] [11] [12] [13] [14] [15] [16]
Underfull \hbox (badness 10000) in paragraph at lines 1326--1327
@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

Underfull \hbox (badness 10000) in paragraph at lines 1327--1328
 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

Underfull \hbox (badness 10000) in paragraph at lines 1330--1332
@texttt R_MAKEVARS_USER[]@textrm ,  @texttt ~/.R/Makevars-

Underfull \hbox (badness 10000) in paragraph at lines 1332--1334
 @texttt ~/.R/Makevars.win64[]@textrm ,

Underfull \hbox (badness 10000) in paragraph at lines 1340--1341
@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

Underfull \hbox (badness 10000) in paragraph at lines 1341--1342
 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

Underfull \hbox (badness 10000) in paragraph at lines 1344--1346
@texttt R_MAKEVARS_USER[]@textrm ,  @texttt ~/.R/Makevars-

Underfull \hbox (badness 10000) in paragraph at lines 1346--1348
 @texttt ~/.R/Makevars.win64[]@textrm ,
[17] [18] [19] [20]
Overfull \hbox (95.42339pt too wide) in paragraph at lines 1610--1610
 []                  @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec"
, "--no-test-load")[] 

Overfull \hbox (72.42863pt too wide) in paragraph at lines 1611--1611
 []        @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL
, quiet = TRUE)[] 

Overfull \hbox (20.69044pt too wide) in paragraph at lines 1612--1612
 []        @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata.
rdb"))[] 
[21]
Underfull \hbox (badness 10000) in paragraph at lines 1643--1650
@texttt org/  package=amap[]@textrm )[]), Python or Tcl ([][]@textbf Simile @te
xtrm (@texttt https://  CRAN.  R-project.  org/
[22] [23] [24] [25] [26]
Overfull \hbox (32.18782pt too wide) in paragraph at lines 2049--2049
 []@texttt $ pkg-config --exists 
libtiff-4 >= 4.1.0
 --print-errors # check the status[] 
[27] [28] [29]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 2293--2293
 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[30] [31] [32] [33] [34]
Overfull \hbox (67.78206pt too wide) in paragraph at lines 2700--2700
 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

Overfull \hbox (53.60722pt too wide) in paragraph at lines 2702--2702
 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[35] [36]
Overfull \hbox (16.92342pt too wide) in paragraph at lines 2840--2840
 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[37] [38] [39]
Underfull \hbox (badness 7221) in paragraph at lines 3052--3058
[][][]@smallrm See [][]@smalltt https://  isocpp.  org/  std/  standing-documen
ts/  sd-6-sg10-feature-test-recommendations[][] @smallrm or
[40]
Overfull \hbox (60.93126pt too wide) in paragraph at lines 3139--3139
 []            @texttt CXX="$(CXX17) $(CXX17STD)" CXXFLAGS="$(CXX17FLAGS) $(CXX
17PICFLAGS)")[] 
[41] [42] [43]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 3394--3394
 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin
/cmake; fi[] 
[44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58]
[59] [60] [61]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 4794--4794
 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s
pline)[] 
[62] [63] [64]
Overfull \hbox (81.29893pt too wide) in paragraph at lines 5030--5030
 []         @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB
ILITY)" \[] 

Overfull \hbox (59.61772pt too wide) in paragraph at lines 5049--5049
 []@texttt CXXFLAGS = ^^R"${RBIN}" CMD config CXXFLAGS^^R ^^R"${RBIN}" CMD conf
ig CXXPICFLAGS^^R[] 
[65] [66] [67] [68] [69] [70]
Overfull \hbox (53.86903pt too wide) in paragraph at lines 5533--5533
 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[] 

Overfull \hbox (48.12035pt too wide) in paragraph at lines 5535--5535
 []  @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse 
= "."))[] 

Overfull \hbox (65.36641pt too wide) in paragraph at lines 5536--5536
 []  @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[] 
[71]
Overfull \hbox (76.86378pt too wide) in paragraph at lines 5551--5551
 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor 
version 52.0[] 
[72] [73] [74] [75] [76]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 5931--5931
 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[77] [78]
Underfull \hbox (badness 10000) in paragraph at lines 6101--6104
 @texttt gcc/  C-Extensions.  html[][] @textrm and [][]@texttt https://  gcc.  
gnu.  org/  onlinedocs/  gcc/
[79]
Overfull \hbox (19.3769pt too wide) in paragraph at lines 6187--6187
 []@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall
oc[] 
[80] [81]
Overfull \hbox (53.86903pt too wide) in paragraph at lines 6333--6333
 []@texttt 
register
 storage class specifier is deprecated and incompatible with C++17[] 
[82]
Overfull \hbox (13.62822pt too wide) in paragraph at lines 6398--6398
 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__)
)[] 
[83]
Overfull \hbox (48.12035pt too wide) in paragraph at lines 6475--6475
 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS:
kdenestmlcvb
 :: kdenestmlcvb[] 

Overfull \hbox (25.1256pt too wide) in paragraph at lines 6487--6487
 []@texttt warning: argument 1 value 
18446744073709551615
 exceeds maximum object[] 

Overfull \hbox (94.10985pt too wide) in paragraph at lines 6502--6502
 []    @texttt error("Actual: %0.f; Expected %0.f\n", (double) XLENGTH(Robj), (
double) nelem);[] 
[84]
Underfull \hbox (badness 10000) in paragraph at lines 6553--6554
[][][]@smallrm See [][]@smalltt https://  prereleases.  llvm.  org/  11.  0.  0
/  rc2/  tools/  clang/  docs/  ReleaseNotes.  html#
[85] [86] [87] [88] [89] [90]
Overfull \hbox (19.3769pt too wide) in paragraph at lines 7054--7054
 []@texttt #define dngettext(pkg, String, StringP, N) (N == 1 ? String : String
P)[] 
[91] [92] Chapter 2 [93] [94] [95] [96] [97] [98] [99] [100] [101] [102]
[103] [104] [105] [106]
Underfull \hbox (badness 10000) in paragraph at lines 8330--8337
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[107] [108] [109]
Underfull \hbox (badness 10000) in paragraph at lines 8542--8547
 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt
 TRUE[] @textit and
[110] [111] [112] Chapter 3 [113] [114] [115] [116] [117] [118] [119]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 9313--9313
 []@texttt 5497      1.9783  R                        findVarLocInFrame.part.0.
lto_priv.0[] 
[120] Chapter 4 [121] [122] [123]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 9585--9585
 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[124]
Overfull \hbox (25.25755pt too wide) in paragraph at lines 9626--9626
 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[125]
Overfull \hbox (20.53261pt too wide) in paragraph at lines 9730--9730
 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

Overfull \hbox (38.96663pt too wide) in paragraph at lines 9760--9769
[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[126] [127] [128] [129]
Underfull \hbox (badness 10000) in paragraph at lines 10032--10037
@smalltt developer.  apple.  com/  documentation/  xcode/  diagnosing-memory-th
read-and-crash-issues-early[][]@smallrm .

Underfull \hbox (badness 10000) in paragraph at lines 10030--10043
@texttt controlling-code-generation[][]@textrm , [][]@texttt https://  clang.  
llvm.  org/  docs/  AddressSanitizer.

Overfull \hbox (48.90796pt too wide) in paragraph at lines 10047--10048
[][][]@smallrm see [][]@smalltt https://  llvm.  org/  devmtg/  2014-04/  PDFs/
  LightningTalks/  EuroLLVM%202014%20--%20container%20overflow.
[130] [131]
Overfull \hbox (78.17732pt too wide) in paragraph at lines 10196--10196
 []@texttt setenv ASAN_OPTIONS 
alloc_dealloc_mismatch=0:detect_leaks=0:detect_odr_violation=0
[] 

Overfull \hbox (32.81921pt too wide) in paragraph at lines 10221--10224
[][]@smalltt https://  developer.  apple.  com/  documentation/  xcode/  diagno
sing-memory-thread-and-crash-issues-early[][]@smallrm .| 

Overfull \hbox (33.15736pt too wide) in paragraph at lines 10234--10237
[]@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]
[132] [133]
Underfull \hbox (badness 10000) in paragraph at lines 10333--10337
[][]@texttt https://  blog.  llvm.  org/  2011/  05/  what-every-c-programmer-s
hould-know.  html[][]

Overfull \hbox (112.66945pt too wide) in paragraph at lines 10349--10349
 []@texttt CC = clang -fsanitize=undefined -fno-sanitize=float-divide-by-zero -
fno-omit-frame-pointer[] 

Overfull \hbox (170.15633pt too wide) in paragraph at lines 10350--10350
 []@texttt CXX = clang++ -fsanitize=undefined -fno-sanitize=float-divide-by-zer
o -fno-omit-frame-pointer -frtti[] 

Overfull \hbox (181.6537pt too wide) in paragraph at lines 10353--10353
 []@texttt SAN_LIBS = $(UBSAN_DIR)/libclang_rt.ubsan_standalone.a $(UBSAN_DIR)/
libclang_rt.ubsan_standalone_cxx.a[] 

Overfull \hbox (37.93651pt too wide) in paragraph at lines 10361--10361
 []@texttt SAN_LIBS = -L$(UBSAN_DIR) -Wl,-rpath,$(UBSAN_DIR) -lclang_rt.ubsan_s
tandalone[] 

Overfull \hbox (2.03816pt too wide) in paragraph at lines 10405--10409
[]@textrm See [][]@texttt https://  gcc.  gnu.  org/  onlinedocs/  gcc-10.  1. 
 0/  gcc/  Static-Analyzer-Options.
[134]
Overfull \hbox (72.42863pt too wide) in paragraph at lines 10428--10428
 []@texttt Fortran runtime error: Index 
1
 of dimension 1 of array 
x
 above upper bound of 0[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10473--10473
 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10476--10476
 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[135] [136]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 10555--10555
 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[137] [138] [139]
Underfull \hbox (badness 10000) in paragraph at lines 10798--10800
[][][]@smallrm See [][]@smalltt https://  svn.  r-project.  org/  R-dev-web/  t
runk/  CRAN/  QA/  Simon/  R-build/  fixpathR[][]@smallrm :
[140]
Overfull \hbox (124.16682pt too wide) in paragraph at lines 10865--10865
 []@texttt boot.f:61: warning: type of 
ddot
 does not match original declaration [-Wlto-type-mismatch][] 

Overfull \hbox (147.16158pt too wide) in paragraph at lines 10884--10884
 []@texttt rkpk2.f:77:5: warning: type of 
dstup
 does not match original declaration [-Wlto-type-mismatch][] 

Overfull \hbox (141.41289pt too wide) in paragraph at lines 10895--10895
 []@texttt reg.f:78:33: warning: type of 
dqrdc
 does not match original declaration [-Wlto-type-mismatch][] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10915--10915
 []                                                                        @tex
ttt 1[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10924--10924
 []                                                                        @tex
ttt 1[] 

Overfull \hbox (43.6852pt too wide) in paragraph at lines 10925--10925
 []@texttt Warning: Type mismatch in argument 
jpvt
 at (1); passed REAL(8) to INTEGER(4)[] 
[141] Chapter 5 [142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
[152]
Overfull \hbox (30.87428pt too wide) in paragraph at lines 11741--11741
 []                      @texttt double *w, int *iper, double *span, double *al
pha,[] 

Overfull \hbox (51.66371pt too wide) in paragraph at lines 11805--11805
 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[] 
[153] [154]
Overfull \hbox (60.93126pt too wide) in paragraph at lines 11969--11969
 []  @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n
a_omit_xts");[] 
[155] [156] [157] [158] [159] [160]
Overfull \hbox (37.93651pt too wide) in paragraph at lines 12407--12407
 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 13278--13278
 []    @texttt if(ign == NA_LOGICAL) error("
ignore_quotes
 must be TRUE or FALSE");[] 
[172]
Underfull \hbox (badness 10000) in paragraph at lines 13428--13432
[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[173] [174] [175] [176] [177] [178] [179]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 13992--13992
 []    @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[] 
[180] [181]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 14116--14116
 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 14121--14121
 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[182]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 14176--14176
 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 14189--14189
 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[183]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 14288--14288
 []        @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV
alue));[] 
[184] [185]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 14437--14437
 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[186]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 14528--14528
 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[187] [188]
Overfull \hbox (72.42863pt too wide) in paragraph at lines 14623--14623
 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
_ANY} cetype_t;[] 
Chapter 6 [189] [190] [191] [192] [193] [194] [195] [196] [197]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 15441--15441
 []        @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term
inator[] 

Underfull \hbox (badness 10000) in paragraph at lines 15459--15464
@texttt com/  content/  www/  us/  en/  docs/  fortran-compiler/  developer-gui
de-reference/
[198] [199] [200] [201] [202] [203] [204] [205] [206] [207]
Underfull \hbox (badness 10000) in paragraph at lines 16200--16204
 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na
.last, decreasing)[]@textrm .
[208] Warning: unbalanced parentheses in @def... [209] [210]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 16397--16397
 []                     @texttt SEXP (*hndlr)(SEXP cond, void *hdata), void *hd
ata);[] 

Overfull \hbox (66.67995pt too wide) in paragraph at lines 16404--16404
 []                               @texttt SEXP (*hndlr)(SEXP cond, void *hdata)
, void *hdata)[] 

Overfull \hbox (26.43913pt too wide) in paragraph at lines 16433--16433
 []                     @texttt void (*clean)(void *data, Rboolean jump), void 
*cdata,[] 
[211] [212] [213] [214] [215] Chapter 7 [216] [217] Chapter 8 [218] [219]
[220]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 17198--17198
 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was built with a s
tatic libR[] 
[221]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 17241--17241
 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

Overfull \hbox (55.18257pt too wide) in paragraph at lines 17256--17256
 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[222] [223] [224] [225] [226] [227] [228] [229] [230]
(Function and variable index) [231]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-exts.vrs [232] [233]
[234] [235]) [236] (Concept index) [237]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-exts.cps [238]) [239] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts
/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmm
i9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texl
ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmss10.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>
Output written on R-exts.pdf (246 pages, 1068611 bytes).
Transcript written on R-exts.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode

(/build/reproducible-path/r-base-4.4.3/doc/manual/R-exts.t2d/pdf/xtr/R-exts.tex
i (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/build/reproducible-path/r-base-4.4.3/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, microtype, and turning on texinfo input format.)
Writing index file R-exts.vr
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/build/reproducible-path/r-base-4.4.3/doc/manual/version.texi) [1{/var/lib/tex
mf/fonts/map/pdftex/updmap/pdftex.map}] [2]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-exts.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-exts.toc [-1] [-2] [-3]
[-4]) [-5] (/build/reproducible-path/r-base-4.4.3/doc/manual/R-exts.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-exts.toc)
(Acknowledgements) (/build/reproducible-path/r-base-4.4.3/doc/manual/R-exts.aux
) Chapter 1 [1]
Writing index file R-exts.cp
[2] [3] [4] [5] [6]
Underfull \hbox (badness 10000) in paragraph at lines 516--519
[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[7] [8] [9] [10] [11] [12] [13] [14] [15] [16]
Underfull \hbox (badness 10000) in paragraph at lines 1326--1327
@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

Underfull \hbox (badness 10000) in paragraph at lines 1327--1328
 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

Underfull \hbox (badness 10000) in paragraph at lines 1330--1332
@texttt R_MAKEVARS_USER[]@textrm ,  @texttt ~/.R/Makevars-

Underfull \hbox (badness 10000) in paragraph at lines 1332--1334
 @texttt ~/.R/Makevars.win64[]@textrm ,

Underfull \hbox (badness 10000) in paragraph at lines 1340--1341
@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

Underfull \hbox (badness 10000) in paragraph at lines 1341--1342
 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

Underfull \hbox (badness 10000) in paragraph at lines 1344--1346
@texttt R_MAKEVARS_USER[]@textrm ,  @texttt ~/.R/Makevars-

Underfull \hbox (badness 10000) in paragraph at lines 1346--1348
 @texttt ~/.R/Makevars.win64[]@textrm ,
[17] [18] [19] [20]
Overfull \hbox (95.42339pt too wide) in paragraph at lines 1610--1610
 []                  @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec"
, "--no-test-load")[] 

Overfull \hbox (72.42863pt too wide) in paragraph at lines 1611--1611
 []        @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL
, quiet = TRUE)[] 

Overfull \hbox (20.69044pt too wide) in paragraph at lines 1612--1612
 []        @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata.
rdb"))[] 
[21]
Underfull \hbox (badness 10000) in paragraph at lines 1643--1650
@texttt org/  package=amap[]@textrm )[]), Python or Tcl ([][]@textbf Simile @te
xtrm (@texttt https://  CRAN.  R-project.  org/
[22] [23] [24] [25] [26]
Overfull \hbox (32.18782pt too wide) in paragraph at lines 2049--2049
 []@texttt $ pkg-config --exists 
libtiff-4 >= 4.1.0
 --print-errors # check the status[] 
[27] [28] [29]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 2293--2293
 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[30] [31] [32] [33] [34]
Overfull \hbox (67.78206pt too wide) in paragraph at lines 2700--2700
 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

Overfull \hbox (53.60722pt too wide) in paragraph at lines 2702--2702
 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[35] [36]
Overfull \hbox (16.92342pt too wide) in paragraph at lines 2840--2840
 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[37] [38] [39]
Underfull \hbox (badness 7221) in paragraph at lines 3052--3058
[][][]@smallrm See [][]@smalltt https://  isocpp.  org/  std/  standing-documen
ts/  sd-6-sg10-feature-test-recommendations[][] @smallrm or
[40]
Overfull \hbox (60.93126pt too wide) in paragraph at lines 3139--3139
 []            @texttt CXX="$(CXX17) $(CXX17STD)" CXXFLAGS="$(CXX17FLAGS) $(CXX
17PICFLAGS)")[] 
[41] [42] [43]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 3394--3394
 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin
/cmake; fi[] 
[44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58]
[59] [60] [61]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 4794--4794
 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s
pline)[] 
[62] [63] [64]
Overfull \hbox (81.29893pt too wide) in paragraph at lines 5030--5030
 []         @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB
ILITY)" \[] 

Overfull \hbox (59.61772pt too wide) in paragraph at lines 5049--5049
 []@texttt CXXFLAGS = ^^R"${RBIN}" CMD config CXXFLAGS^^R ^^R"${RBIN}" CMD conf
ig CXXPICFLAGS^^R[] 
[65] [66] [67] [68] [69] [70]
Overfull \hbox (53.86903pt too wide) in paragraph at lines 5533--5533
 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[] 

Overfull \hbox (48.12035pt too wide) in paragraph at lines 5535--5535
 []  @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse 
= "."))[] 

Overfull \hbox (65.36641pt too wide) in paragraph at lines 5536--5536
 []  @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[] 
[71]
Overfull \hbox (76.86378pt too wide) in paragraph at lines 5551--5551
 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor 
version 52.0[] 
[72] [73] [74] [75] [76]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 5931--5931
 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[77] [78]
Underfull \hbox (badness 10000) in paragraph at lines 6101--6104
 @texttt gcc/  C-Extensions.  html[][] @textrm and [][]@texttt https://  gcc.  
gnu.  org/  onlinedocs/  gcc/
[79]
Overfull \hbox (19.3769pt too wide) in paragraph at lines 6187--6187
 []@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall
oc[] 
[80] [81]
Overfull \hbox (53.86903pt too wide) in paragraph at lines 6333--6333
 []@texttt 
register
 storage class specifier is deprecated and incompatible with C++17[] 
[82]
Overfull \hbox (13.62822pt too wide) in paragraph at lines 6398--6398
 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__)
)[] 
[83]
Overfull \hbox (48.12035pt too wide) in paragraph at lines 6475--6475
 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS:
kdenestmlcvb
 :: kdenestmlcvb[] 

Overfull \hbox (25.1256pt too wide) in paragraph at lines 6487--6487
 []@texttt warning: argument 1 value 
18446744073709551615
 exceeds maximum object[] 

Overfull \hbox (94.10985pt too wide) in paragraph at lines 6502--6502
 []    @texttt error("Actual: %0.f; Expected %0.f\n", (double) XLENGTH(Robj), (
double) nelem);[] 
[84]
Underfull \hbox (badness 10000) in paragraph at lines 6553--6554
[][][]@smallrm See [][]@smalltt https://  prereleases.  llvm.  org/  11.  0.  0
/  rc2/  tools/  clang/  docs/  ReleaseNotes.  html#
[85] [86] [87] [88] [89] [90]
Overfull \hbox (19.3769pt too wide) in paragraph at lines 7054--7054
 []@texttt #define dngettext(pkg, String, StringP, N) (N == 1 ? String : String
P)[] 
[91] [92] Chapter 2 [93] [94] [95] [96] [97] [98] [99] [100] [101] [102]
[103] [104] [105] [106]
Underfull \hbox (badness 10000) in paragraph at lines 8330--8337
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[107] [108] [109]
Underfull \hbox (badness 10000) in paragraph at lines 8542--8547
 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt
 TRUE[] @textit and
[110] [111] [112] Chapter 3 [113] [114] [115] [116] [117] [118] [119]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 9313--9313
 []@texttt 5497      1.9783  R                        findVarLocInFrame.part.0.
lto_priv.0[] 
[120] Chapter 4 [121] [122] [123]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 9585--9585
 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[124]
Overfull \hbox (25.25755pt too wide) in paragraph at lines 9626--9626
 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[125]
Overfull \hbox (20.53261pt too wide) in paragraph at lines 9730--9730
 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

Overfull \hbox (38.96663pt too wide) in paragraph at lines 9760--9769
[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[126] [127] [128] [129]
Underfull \hbox (badness 10000) in paragraph at lines 10032--10037
@smalltt developer.  apple.  com/  documentation/  xcode/  diagnosing-memory-th
read-and-crash-issues-early[][]@smallrm .

Underfull \hbox (badness 10000) in paragraph at lines 10030--10043
@texttt controlling-code-generation[][]@textrm , [][]@texttt https://  clang.  
llvm.  org/  docs/  AddressSanitizer.

Overfull \hbox (48.90796pt too wide) in paragraph at lines 10047--10048
[][][]@smallrm see [][]@smalltt https://  llvm.  org/  devmtg/  2014-04/  PDFs/
  LightningTalks/  EuroLLVM%202014%20--%20container%20overflow.
[130] [131]
Overfull \hbox (78.17732pt too wide) in paragraph at lines 10196--10196
 []@texttt setenv ASAN_OPTIONS 
alloc_dealloc_mismatch=0:detect_leaks=0:detect_odr_violation=0
[] 

Overfull \hbox (32.81921pt too wide) in paragraph at lines 10221--10224
[][]@smalltt https://  developer.  apple.  com/  documentation/  xcode/  diagno
sing-memory-thread-and-crash-issues-early[][]@smallrm .| 

Overfull \hbox (33.15736pt too wide) in paragraph at lines 10234--10237
[]@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]
[132] [133]
Underfull \hbox (badness 10000) in paragraph at lines 10333--10337
[][]@texttt https://  blog.  llvm.  org/  2011/  05/  what-every-c-programmer-s
hould-know.  html[][]

Overfull \hbox (112.66945pt too wide) in paragraph at lines 10349--10349
 []@texttt CC = clang -fsanitize=undefined -fno-sanitize=float-divide-by-zero -
fno-omit-frame-pointer[] 

Overfull \hbox (170.15633pt too wide) in paragraph at lines 10350--10350
 []@texttt CXX = clang++ -fsanitize=undefined -fno-sanitize=float-divide-by-zer
o -fno-omit-frame-pointer -frtti[] 

Overfull \hbox (181.6537pt too wide) in paragraph at lines 10353--10353
 []@texttt SAN_LIBS = $(UBSAN_DIR)/libclang_rt.ubsan_standalone.a $(UBSAN_DIR)/
libclang_rt.ubsan_standalone_cxx.a[] 

Overfull \hbox (37.93651pt too wide) in paragraph at lines 10361--10361
 []@texttt SAN_LIBS = -L$(UBSAN_DIR) -Wl,-rpath,$(UBSAN_DIR) -lclang_rt.ubsan_s
tandalone[] 

Overfull \hbox (2.03816pt too wide) in paragraph at lines 10405--10409
[]@textrm See [][]@texttt https://  gcc.  gnu.  org/  onlinedocs/  gcc-10.  1. 
 0/  gcc/  Static-Analyzer-Options.
[134]
Overfull \hbox (72.42863pt too wide) in paragraph at lines 10428--10428
 []@texttt Fortran runtime error: Index 
1
 of dimension 1 of array 
x
 above upper bound of 0[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10473--10473
 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10476--10476
 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[135] [136]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 10555--10555
 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[137] [138] [139]
Underfull \hbox (badness 10000) in paragraph at lines 10798--10800
[][][]@smallrm See [][]@smalltt https://  svn.  r-project.  org/  R-dev-web/  t
runk/  CRAN/  QA/  Simon/  R-build/  fixpathR[][]@smallrm :
[140]
Overfull \hbox (124.16682pt too wide) in paragraph at lines 10865--10865
 []@texttt boot.f:61: warning: type of 
ddot
 does not match original declaration [-Wlto-type-mismatch][] 

Overfull \hbox (147.16158pt too wide) in paragraph at lines 10884--10884
 []@texttt rkpk2.f:77:5: warning: type of 
dstup
 does not match original declaration [-Wlto-type-mismatch][] 

Overfull \hbox (141.41289pt too wide) in paragraph at lines 10895--10895
 []@texttt reg.f:78:33: warning: type of 
dqrdc
 does not match original declaration [-Wlto-type-mismatch][] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10915--10915
 []                                                                        @tex
ttt 1[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10924--10924
 []                                                                        @tex
ttt 1[] 

Overfull \hbox (43.6852pt too wide) in paragraph at lines 10925--10925
 []@texttt Warning: Type mismatch in argument 
jpvt
 at (1); passed REAL(8) to INTEGER(4)[] 
[141] Chapter 5 [142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
[152]
Overfull \hbox (30.87428pt too wide) in paragraph at lines 11741--11741
 []                      @texttt double *w, int *iper, double *span, double *al
pha,[] 

Overfull \hbox (51.66371pt too wide) in paragraph at lines 11805--11805
 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[] 
[153] [154]
Overfull \hbox (60.93126pt too wide) in paragraph at lines 11969--11969
 []  @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n
a_omit_xts");[] 
[155] [156] [157] [158] [159] [160]
Overfull \hbox (37.93651pt too wide) in paragraph at lines 12407--12407
 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 13278--13278
 []    @texttt if(ign == NA_LOGICAL) error("
ignore_quotes
 must be TRUE or FALSE");[] 
[172]
Underfull \hbox (badness 10000) in paragraph at lines 13428--13432
[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[173] [174] [175] [176] [177] [178] [179]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 13992--13992
 []    @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[] 
[180] [181]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 14116--14116
 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 14121--14121
 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[182]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 14176--14176
 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 14189--14189
 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[183]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 14288--14288
 []        @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV
alue));[] 
[184] [185]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 14437--14437
 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[186]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 14528--14528
 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[187] [188]
Overfull \hbox (72.42863pt too wide) in paragraph at lines 14623--14623
 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
_ANY} cetype_t;[] 
Chapter 6 [189] [190] [191] [192] [193] [194] [195] [196] [197]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 15441--15441
 []        @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term
inator[] 

Underfull \hbox (badness 10000) in paragraph at lines 15459--15464
@texttt com/  content/  www/  us/  en/  docs/  fortran-compiler/  developer-gui
de-reference/
[198] [199] [200] [201] [202] [203] [204] [205] [206] [207]
Underfull \hbox (badness 10000) in paragraph at lines 16200--16204
 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na
.last, decreasing)[]@textrm .
[208] Warning: unbalanced parentheses in @def... [209] [210]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 16397--16397
 []                     @texttt SEXP (*hndlr)(SEXP cond, void *hdata), void *hd
ata);[] 

Overfull \hbox (66.67995pt too wide) in paragraph at lines 16404--16404
 []                               @texttt SEXP (*hndlr)(SEXP cond, void *hdata)
, void *hdata)[] 

Overfull \hbox (26.43913pt too wide) in paragraph at lines 16433--16433
 []                     @texttt void (*clean)(void *data, Rboolean jump), void 
*cdata,[] 
[211] [212] [213] [214] [215] Chapter 7 [216] [217] Chapter 8 [218] [219]
[220]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 17198--17198
 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was built with a s
tatic libR[] 
[221]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 17241--17241
 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

Overfull \hbox (55.18257pt too wide) in paragraph at lines 17256--17256
 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[222] [223] [224] [225] [226] [227] [228] [229] [230]
(Function and variable index) [231]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-exts.vrs [232] [233]
[234] [235]) [236] (Concept index) [237]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-exts.cps [238]) [239] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts
/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmm
i9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texl
ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmss10.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>
Output written on R-exts.pdf (246 pages, 1068601 bytes).
Transcript written on R-exts.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-FAQ.texi
@setfilename R-FAQ.info
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/build/reproducible-path/r-base-4.4.3/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, microtype, and turning on texinfo input format.)
(/usr/share/texmf/tex/texinfo/txi-en.tex)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex)) [1{/var/lib/texmf/fonts/map/pdftex/u
pdmap/pdftex.map}] [-1] Chapter 1 Chapter 2 [1]
Cross reference values unknown; you must run TeX again. [2]
Underfull \hbox (badness 10000) in paragraph at lines 294--323
@textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https://  buildd
.  debian.  org/  build.  php?  &  pkg=r-base[][]@textrm ),
[3] [4] [5] [6]
Underfull \hbox (badness 10000) in paragraph at lines 658--663
@textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https://  doi.  org/ 
 10.  1080/  10618600.  1996.
[7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17]
Underfull \hbox (badness 10000) in paragraph at lines 1531--1534
[]@textrm See also [][]@texttt https://  en.  wikipedia.  org/  wiki/  R_progra
mming_language#

Underfull \hbox (badness 10000) in paragraph at lines 1531--1534
@texttt Commercialized_versions_of_R[][] @textrm for point-ers to com-mer-cial-
ized ver-sions of
Chapter 4 [18] Chapter 5 [19] [20] [21]
Overfull \hbox (14.27353pt too wide) in paragraph at lines 1819--1819
 []@smalltt MASS          Support Functions and Datasets for Venables and Riple
y
s MASS[] 
[22] [23] Chapter 6 [24] [25] Chapter 7 [26] [27] [28] [29] [30] [31] [32]
[33] [34] [35] [36] [37]
Writing index file R-FAQ.fn
[38]
Underfull \hbox (badness 10000) in paragraph at lines 3135--3149
@textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy
ch @textrm (@texttt https://  CRAN.  R-project.  org/
[39] [40] [41] Chapter 8 [42] Chapter 9 [43] [44] [45] Chapter 10 [46] [47] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/latxfont/lcircle1.pfb>
Output written on R-FAQ.pdf (49 pages, 351208 bytes).
Transcript written on R-FAQ.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/build/reproducible-path/r-base-4.4.3/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, microtype, and turning on texinfo input format.)
(/usr/share/texmf/tex/texinfo/txi-en.tex)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex)) [1{/var/lib/texmf/fonts/map/pdftex/u
pdmap/pdftex.map}] (/build/reproducible-path/r-base-4.4.3/doc/manual/R-FAQ.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-FAQ.toc [-1] [-2]) [-3]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-FAQ.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-FAQ.toc) Chapter 1
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-FAQ.aux) Chapter 2 [1]
[2]
Underfull \hbox (badness 10000) in paragraph at lines 294--323
@textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https://  buildd
.  debian.  org/  build.  php?  &  pkg=r-base[][]@textrm ),
[3] [4] [5] [6]
Underfull \hbox (badness 10000) in paragraph at lines 658--663
@textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https://  doi.  org/ 
 10.  1080/  10618600.  1996.
[7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17]
Underfull \hbox (badness 10000) in paragraph at lines 1531--1534
[]@textrm See also [][]@texttt https://  en.  wikipedia.  org/  wiki/  R_progra
mming_language#

Underfull \hbox (badness 10000) in paragraph at lines 1531--1534
@texttt Commercialized_versions_of_R[][] @textrm for point-ers to com-mer-cial-
ized ver-sions of
Chapter 4 [18] Chapter 5 [19] [20] [21]
Overfull \hbox (14.27353pt too wide) in paragraph at lines 1819--1819
 []@smalltt MASS          Support Functions and Datasets for Venables and Riple
y
s MASS[] 
[22] [23] Chapter 6 [24] [25] Chapter 7 [26] [27] [28] [29] [30] [31] [32]
[33] [34] [35] [36] [37]
Writing index file R-FAQ.fn
[38]
Underfull \hbox (badness 10000) in paragraph at lines 3135--3149
@textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy
ch @textrm (@texttt https://  CRAN.  R-project.  org/
[39] [40] [41] Chapter 8 [42] Chapter 9 [43] [44] [45] Chapter 10 [46] [47] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/latxfont/lcircle1.pfb>
Output written on R-FAQ.pdf (51 pages, 368259 bytes).
Transcript written on R-FAQ.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi
@setfilename R-intro.info
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode

(/build/reproducible-path/r-base-4.4.3/doc/manual/R-intro.t2d/pdf/xtr/R-intro.t
exi (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/build/reproducible-path/r-base-4.4.3/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, microtype, and turning on texinfo input format.)
Writing index file R-intro.vr
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/build/reproducible-path/r-base-4.4.3/doc/manual/version.texi) [1{/var/lib/tex
mf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface)
Cross reference values unknown; you must run TeX again. Chapter 1 [1]
Writing index file R-intro.cp
[2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13]
[14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24]
[25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34]
Chapter 8 [35] [36] [37] </build/reproducible-path/r-base-4.4.3/doc/manual/imag
es/hist.pdf> </build/reproducible-path/r-base-4.4.3/doc/manual/images/ecdf.pdf>
[38] </build/reproducible-path/r-base-4.4.3/doc/manual/images/QQ.pdf> [39] </bu
ild/reproducible-path/r-base-4.4.3/doc/manual/images/ice.pdf> [40] [41]
Chapter 9 [42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52]
[53] Chapter 11 [54] [55] [56] [57] [58] [59] [60]
Underfull \hbox (badness 10000) in paragraph at lines 4839--4841
 @texttt logit[]@textrm , @texttt probit[]@textrm , @texttt cloglog[]@textrm , 
@texttt identity[]@textrm ,
[61] [62] [63] [64] [65]
Underfull \hbox (badness 10000) in paragraph at lines 5254--5264
 [][]@textbf Mixed mod-els. @textrm The rec-om-mended [][]@textbf nlme @textrm 
(@texttt https://  CRAN.  R-project.  org/
[66] Chapter 12 [67] [68] [69] [70] [71]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 5734--5734
 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{
n-x})))[] 
[72] [73] [74] [75] [76] </build/reproducible-path/r-base-4.4.3/doc/manual/imag
es/fig11.pdf> [77] </build/reproducible-path/r-base-4.4.3/doc/manual/images/fig
12.pdf> [78] [79] [80] [81] Chapter 13 [82]
Underfull \hbox (badness 10000) in paragraph at lines 6445--6450
[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[83] Chapter 14 [84] [85]
Underfull \hbox (badness 10000) in paragraph at lines 6653--6658
 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t
extrm and
[86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95]
[96] [97] [98] Appendix C [99] [100] Appendix D [101]
No file R-intro.vrs.
Appendix E [102]
No file R-intro.cps.
Appendix F [103] [104] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
mi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/tex
live/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/tex
mf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dis
t/fonts/type1/public/amsfonts/cm/cmsl9.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmsy9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti
9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>
Output written on R-intro.pdf (107 pages, 572282 bytes).
Transcript written on R-intro.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode

(/build/reproducible-path/r-base-4.4.3/doc/manual/R-intro.t2d/pdf/xtr/R-intro.t
exi (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/build/reproducible-path/r-base-4.4.3/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, microtype, and turning on texinfo input format.)
Writing index file R-intro.vr
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/build/reproducible-path/r-base-4.4.3/doc/manual/version.texi) [1{/var/lib/tex
mf/fonts/map/pdftex/updmap/pdftex.map}] [2]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-intro.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-intro.toc [-1] [-2]
[-3]) [-4] (/build/reproducible-path/r-base-4.4.3/doc/manual/R-intro.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-intro.toc) (Preface)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-intro.aux) Chapter 1
[1]
Writing index file R-intro.cp
[2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13]
[14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24]
[25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34]
Chapter 8 [35] [36] [37] </build/reproducible-path/r-base-4.4.3/doc/manual/imag
es/hist.pdf> </build/reproducible-path/r-base-4.4.3/doc/manual/images/ecdf.pdf>
[38] </build/reproducible-path/r-base-4.4.3/doc/manual/images/QQ.pdf> [39] </bu
ild/reproducible-path/r-base-4.4.3/doc/manual/images/ice.pdf> [40] [41]
Chapter 9 [42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52]
[53] Chapter 11 [54] [55] [56] [57] [58] [59] [60]
Underfull \hbox (badness 10000) in paragraph at lines 4839--4841
 @texttt logit[]@textrm , @texttt probit[]@textrm , @texttt cloglog[]@textrm , 
@texttt identity[]@textrm ,
[61] [62] [63] [64] [65]
Underfull \hbox (badness 10000) in paragraph at lines 5254--5264
 [][]@textbf Mixed mod-els. @textrm The rec-om-mended [][]@textbf nlme @textrm 
(@texttt https://  CRAN.  R-project.  org/
[66] Chapter 12 [67] [68] [69] [70] [71]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 5734--5734
 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{
n-x})))[] 
[72] [73] [74] [75] [76] </build/reproducible-path/r-base-4.4.3/doc/manual/imag
es/fig11.pdf> [77] </build/reproducible-path/r-base-4.4.3/doc/manual/images/fig
12.pdf> [78] [79] [80] [81] Chapter 13 [82]
Underfull \hbox (badness 10000) in paragraph at lines 6445--6450
[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[83] Chapter 14 [84] [85]
Underfull \hbox (badness 10000) in paragraph at lines 6653--6658
 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t
extrm and
[86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95]
[96] [97] [98] Appendix C [99] [100] Appendix D [101]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-intro.vrs [102] [103])
Appendix E [104] (/build/reproducible-path/r-base-4.4.3/doc/manual/R-intro.cps
[105]) Appendix F [106] [107] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr
/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmsl9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public
/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>
Output written on R-intro.pdf (113 pages, 623968 bytes).
Transcript written on R-intro.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode

(/build/reproducible-path/r-base-4.4.3/doc/manual/R-intro.t2d/pdf/xtr/R-intro.t
exi (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/build/reproducible-path/r-base-4.4.3/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, microtype, and turning on texinfo input format.)
Writing index file R-intro.vr
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/build/reproducible-path/r-base-4.4.3/doc/manual/version.texi) [1{/var/lib/tex
mf/fonts/map/pdftex/updmap/pdftex.map}] [2]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-intro.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-intro.toc [-1] [-2]
[-3]) [-4] (/build/reproducible-path/r-base-4.4.3/doc/manual/R-intro.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-intro.toc) (Preface)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-intro.aux) Chapter 1
[1]
Writing index file R-intro.cp
[2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13]
[14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24]
[25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34]
Chapter 8 [35] [36] [37] </build/reproducible-path/r-base-4.4.3/doc/manual/imag
es/hist.pdf> </build/reproducible-path/r-base-4.4.3/doc/manual/images/ecdf.pdf>
[38] </build/reproducible-path/r-base-4.4.3/doc/manual/images/QQ.pdf> [39] </bu
ild/reproducible-path/r-base-4.4.3/doc/manual/images/ice.pdf> [40] [41]
Chapter 9 [42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52]
[53] Chapter 11 [54] [55] [56] [57] [58] [59] [60]
Underfull \hbox (badness 10000) in paragraph at lines 4839--4841
 @texttt logit[]@textrm , @texttt probit[]@textrm , @texttt cloglog[]@textrm , 
@texttt identity[]@textrm ,
[61] [62] [63] [64] [65]
Underfull \hbox (badness 10000) in paragraph at lines 5254--5264
 [][]@textbf Mixed mod-els. @textrm The rec-om-mended [][]@textbf nlme @textrm 
(@texttt https://  CRAN.  R-project.  org/
[66] Chapter 12 [67] [68] [69] [70] [71]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 5734--5734
 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{
n-x})))[] 
[72] [73] [74] [75] [76] </build/reproducible-path/r-base-4.4.3/doc/manual/imag
es/fig11.pdf> [77] </build/reproducible-path/r-base-4.4.3/doc/manual/images/fig
12.pdf> [78] [79] [80] [81] Chapter 13 [82]
Underfull \hbox (badness 10000) in paragraph at lines 6445--6450
[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[83] Chapter 14 [84] [85]
Underfull \hbox (badness 10000) in paragraph at lines 6653--6658
 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t
extrm and
[86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95]
[96] [97] [98] Appendix C [99] [100] Appendix D [101]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-intro.vrs [102] [103])
Appendix E [104] (/build/reproducible-path/r-base-4.4.3/doc/manual/R-intro.cps
[105]) Appendix F [106] [107] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr
/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmsl9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public
/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>
Output written on R-intro.pdf (113 pages, 623987 bytes).
Transcript written on R-intro.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-ints.texi
@setfilename R-ints.info
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode

(/build/reproducible-path/r-base-4.4.3/doc/manual/R-ints.t2d/pdf/xtr/R-ints.tex
i (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/build/reproducible-path/r-base-4.4.3/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, microtype, and turning on texinfo input format.)
Writing index file R-ints.vr
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/build/reproducible-path/r-base-4.4.3/doc/manual/version.texi) [1{/var/lib/tex
mf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
Writing index file R-ints.cp
[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17]
[18]
Overfull \hbox (49.43388pt too wide) in paragraph at lines 1498--1498
 [] @texttt length(nM <- asNamespace("Matrix") )                    # 941 for M
atrix 1.2-6[] 

Overfull \hbox (78.17732pt too wide) in paragraph at lines 1499--1499
 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener
ics with methods[] 

Overfull \hbox (66.67995pt too wide) in paragraph at lines 1500--1500
 [] @texttt length(meth.Ops <- nM$^^R.__T__Ops:base^^R) # 71 methods for the 
Ops
 (group)generic[] 

Overfull \hbox (158.65895pt too wide) in paragraph at lines 1501--1501
 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix
" "ANY#ldiMatrix" "ANY#Matrix"[] 
[19] [20] [21] [22] [23] [24] Chapter 2 [25]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 2019--2019
 []    @texttt if (!is.character(x)) x <- structure(as.character(x), names = na
mes(x))[] 
[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40]
Underfull \hbox (badness 10000) in paragraph at lines 3137--3143
 []@textrm The @texttt glyphs[] @textrm com-po-nent re-ports whether ren-der-in
g glyphs (e.g., via
[41] [42] [43] [44] [45] [46] [47] [48] Chapter 7 [49]
Underfull \hbox (badness 10000) in paragraph at lines 3791--3800
@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
sym-bolic link,

Underfull \hbox (badness 10000) in paragraph at lines 3791--3800
@texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl
ib[]@textrm ,
[50]
Overfull \hbox (16.81319pt too wide) in paragraph at lines 3842--3846
 []@textrm The de-fault path for a per-sonal li-brary di-rec-tory is set as @te
xttt ~/Library/R/arch/x.y/library[]@textrm . 
Chapter 8 [51] [52] [53] [54] [55]
Underfull \hbox (badness 10000) in paragraph at lines 4180--4188
 []@textrm A string with comma-separated @textttsl name@texttt =@textttsl value
[] @textrm pairs (with @textsl value[] @textrm a

Underfull \hbox (badness 10000) in paragraph at lines 4180--4188
 @textrm log-i-cal con-stant) giv-ing ad-di-tional ar-gu-ments for the [][]@tex
tbf codetools

Underfull \hbox (badness 10000) in paragraph at lines 4180--4188
 @textrm (@texttt https://  CRAN.  R-project.  org/  package=codetools[]@textrm
 )[] func-tions used

Underfull \hbox (badness 10000) in paragraph at lines 4180--4188
 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa
tchArgs = FALSE[] @textrm and
[56] [57] [58] [59] [60] [61]
Underfull \hbox (badness 10000) in paragraph at lines 4552--4557
 @texttt blog.  r-project.  org/  2022/  04/  08/  enhancements-to-html-documen
tation/
[62] [63] [64] [65] Chapter 9 [66] [67] Chapter 10 [68] Chapter 11 [69]
Chapter 12 [70] [71] (Function and variable index) [72] [73]
No file R-ints.vrs.
(Concept index) [74]
No file R-ints.cps.
[75] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/publ
ic/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></
usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb></usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-ints.pdf (78 pages, 420751 bytes).
Transcript written on R-ints.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode

(/build/reproducible-path/r-base-4.4.3/doc/manual/R-ints.t2d/pdf/xtr/R-ints.tex
i (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/build/reproducible-path/r-base-4.4.3/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, microtype, and turning on texinfo input format.)
Writing index file R-ints.vr
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/build/reproducible-path/r-base-4.4.3/doc/manual/version.texi) [1{/var/lib/tex
mf/fonts/map/pdftex/updmap/pdftex.map}] [2]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-ints.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-ints.toc [-1] [-2])
[-3] (/build/reproducible-path/r-base-4.4.3/doc/manual/R-ints.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-ints.toc) Chapter 1
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-ints.aux)
Writing index file R-ints.cp
[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17]
[18]
Overfull \hbox (49.43388pt too wide) in paragraph at lines 1498--1498
 [] @texttt length(nM <- asNamespace("Matrix") )                    # 941 for M
atrix 1.2-6[] 

Overfull \hbox (78.17732pt too wide) in paragraph at lines 1499--1499
 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener
ics with methods[] 

Overfull \hbox (66.67995pt too wide) in paragraph at lines 1500--1500
 [] @texttt length(meth.Ops <- nM$^^R.__T__Ops:base^^R) # 71 methods for the 
Ops
 (group)generic[] 

Overfull \hbox (158.65895pt too wide) in paragraph at lines 1501--1501
 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix
" "ANY#ldiMatrix" "ANY#Matrix"[] 
[19] [20] [21] [22] [23] [24] Chapter 2 [25]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 2019--2019
 []    @texttt if (!is.character(x)) x <- structure(as.character(x), names = na
mes(x))[] 
[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40]
Underfull \hbox (badness 10000) in paragraph at lines 3137--3143
 []@textrm The @texttt glyphs[] @textrm com-po-nent re-ports whether ren-der-in
g glyphs (e.g., via
[41] [42] [43] [44] [45] [46] [47] [48] Chapter 7 [49]
Underfull \hbox (badness 10000) in paragraph at lines 3791--3800
@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
sym-bolic link,

Underfull \hbox (badness 10000) in paragraph at lines 3791--3800
@texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl
ib[]@textrm ,
[50]
Overfull \hbox (16.81319pt too wide) in paragraph at lines 3842--3846
 []@textrm The de-fault path for a per-sonal li-brary di-rec-tory is set as @te
xttt ~/Library/R/arch/x.y/library[]@textrm . 
Chapter 8 [51] [52] [53] [54] [55]
Underfull \hbox (badness 10000) in paragraph at lines 4180--4188
 []@textrm A string with comma-separated @textttsl name@texttt =@textttsl value
[] @textrm pairs (with @textsl value[] @textrm a

Underfull \hbox (badness 10000) in paragraph at lines 4180--4188
 @textrm log-i-cal con-stant) giv-ing ad-di-tional ar-gu-ments for the [][]@tex
tbf codetools

Underfull \hbox (badness 10000) in paragraph at lines 4180--4188
 @textrm (@texttt https://  CRAN.  R-project.  org/  package=codetools[]@textrm
 )[] func-tions used

Underfull \hbox (badness 10000) in paragraph at lines 4180--4188
 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa
tchArgs = FALSE[] @textrm and
[56] [57] [58] [59] [60] [61]
Underfull \hbox (badness 10000) in paragraph at lines 4552--4557
 @texttt blog.  r-project.  org/  2022/  04/  08/  enhancements-to-html-documen
tation/
[62] [63] [64] [65] Chapter 9 [66] [67] Chapter 10 [68] Chapter 11 [69]
Chapter 12 [70] [71] (Function and variable index) [72] [73]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-ints.vrs [74] [75])
(Concept index) [76]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-ints.cps) [77] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmtt9.pfb>
Output written on R-ints.pdf (82 pages, 469351 bytes).
Transcript written on R-ints.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode

(/build/reproducible-path/r-base-4.4.3/doc/manual/R-ints.t2d/pdf/xtr/R-ints.tex
i (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/build/reproducible-path/r-base-4.4.3/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, microtype, and turning on texinfo input format.)
Writing index file R-ints.vr
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/build/reproducible-path/r-base-4.4.3/doc/manual/version.texi) [1{/var/lib/tex
mf/fonts/map/pdftex/updmap/pdftex.map}] [2]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-ints.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-ints.toc [-1] [-2])
[-3] (/build/reproducible-path/r-base-4.4.3/doc/manual/R-ints.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-ints.toc) Chapter 1
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-ints.aux)
Writing index file R-ints.cp
[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17]
[18]
Overfull \hbox (49.43388pt too wide) in paragraph at lines 1498--1498
 [] @texttt length(nM <- asNamespace("Matrix") )                    # 941 for M
atrix 1.2-6[] 

Overfull \hbox (78.17732pt too wide) in paragraph at lines 1499--1499
 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener
ics with methods[] 

Overfull \hbox (66.67995pt too wide) in paragraph at lines 1500--1500
 [] @texttt length(meth.Ops <- nM$^^R.__T__Ops:base^^R) # 71 methods for the 
Ops
 (group)generic[] 

Overfull \hbox (158.65895pt too wide) in paragraph at lines 1501--1501
 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix
" "ANY#ldiMatrix" "ANY#Matrix"[] 
[19] [20] [21] [22] [23] [24] Chapter 2 [25]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 2019--2019
 []    @texttt if (!is.character(x)) x <- structure(as.character(x), names = na
mes(x))[] 
[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40]
Underfull \hbox (badness 10000) in paragraph at lines 3137--3143
 []@textrm The @texttt glyphs[] @textrm com-po-nent re-ports whether ren-der-in
g glyphs (e.g., via
[41] [42] [43] [44] [45] [46] [47] [48] Chapter 7 [49]
Underfull \hbox (badness 10000) in paragraph at lines 3791--3800
@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
sym-bolic link,

Underfull \hbox (badness 10000) in paragraph at lines 3791--3800
@texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl
ib[]@textrm ,
[50]
Overfull \hbox (16.81319pt too wide) in paragraph at lines 3842--3846
 []@textrm The de-fault path for a per-sonal li-brary di-rec-tory is set as @te
xttt ~/Library/R/arch/x.y/library[]@textrm . 
Chapter 8 [51] [52] [53] [54] [55]
Underfull \hbox (badness 10000) in paragraph at lines 4180--4188
 []@textrm A string with comma-separated @textttsl name@texttt =@textttsl value
[] @textrm pairs (with @textsl value[] @textrm a

Underfull \hbox (badness 10000) in paragraph at lines 4180--4188
 @textrm log-i-cal con-stant) giv-ing ad-di-tional ar-gu-ments for the [][]@tex
tbf codetools

Underfull \hbox (badness 10000) in paragraph at lines 4180--4188
 @textrm (@texttt https://  CRAN.  R-project.  org/  package=codetools[]@textrm
 )[] func-tions used

Underfull \hbox (badness 10000) in paragraph at lines 4180--4188
 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa
tchArgs = FALSE[] @textrm and
[56] [57] [58] [59] [60] [61]
Underfull \hbox (badness 10000) in paragraph at lines 4552--4557
 @texttt blog.  r-project.  org/  2022/  04/  08/  enhancements-to-html-documen
tation/
[62] [63] [64] [65] Chapter 9 [66] [67] Chapter 10 [68] Chapter 11 [69]
Chapter 12 [70] [71] (Function and variable index) [72] [73]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-ints.vrs [74] [75])
(Concept index) [76]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-ints.cps) [77] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmtt9.pfb>
Output written on R-ints.pdf (82 pages, 469344 bytes).
Transcript written on R-ints.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi
@setfilename R-lang.info
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode

(/build/reproducible-path/r-base-4.4.3/doc/manual/R-lang.t2d/pdf/xtr/R-lang.tex
i (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/build/reproducible-path/r-base-4.4.3/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, microtype, and turning on texinfo input format.)
Writing index file R-lang.vr
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/build/reproducible-path/r-base-4.4.3/doc/manual/version.texi) [1{/var/lib/tex
mf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
Writing index file R-lang.cp
Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again.
Overfull \hbox (8.41086pt too wide) in paragraph at lines 306--307
 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] Chapter 5
[28] [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40]
[41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49]
[50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59]
No file R-lang.vrs.
(Concept Index) [60]
No file R-lang.cps.
Appendix A [61] [62] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.
pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy9.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (65 pages, 348687 bytes).
Transcript written on R-lang.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode

(/build/reproducible-path/r-base-4.4.3/doc/manual/R-lang.t2d/pdf/xtr/R-lang.tex
i (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/build/reproducible-path/r-base-4.4.3/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, microtype, and turning on texinfo input format.)
Writing index file R-lang.vr
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/build/reproducible-path/r-base-4.4.3/doc/manual/version.texi) [1{/var/lib/tex
mf/fonts/map/pdftex/updmap/pdftex.map}] [2]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-lang.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-lang.toc [-1] [-2])
[-3] [-4] (/build/reproducible-path/r-base-4.4.3/doc/manual/R-lang.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-lang.toc) Chapter 1
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-lang.aux)
Writing index file R-lang.cp
Chapter 2 [1] [2]
Overfull \hbox (8.41086pt too wide) in paragraph at lines 306--307
 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] Chapter 5
[28] [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40]
[41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49]
[50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-lang.vrs [60])
(Concept Index) [61]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-lang.cps) [62] Appendix A
[63] [64] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (70 pages, 391318 bytes).
Transcript written on R-lang.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode

(/build/reproducible-path/r-base-4.4.3/doc/manual/R-lang.t2d/pdf/xtr/R-lang.tex
i (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/build/reproducible-path/r-base-4.4.3/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, microtype, and turning on texinfo input format.)
Writing index file R-lang.vr
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/build/reproducible-path/r-base-4.4.3/doc/manual/version.texi) [1{/var/lib/tex
mf/fonts/map/pdftex/updmap/pdftex.map}] [2]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-lang.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-lang.toc [-1] [-2])
[-3] [-4] (/build/reproducible-path/r-base-4.4.3/doc/manual/R-lang.toc)
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-lang.toc) Chapter 1
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-lang.aux)
Writing index file R-lang.cp
Chapter 2 [1] [2]
Overfull \hbox (8.41086pt too wide) in paragraph at lines 306--307
 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] Chapter 5
[28] [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40]
[41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49]
[50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-lang.vrs [60])
(Concept Index) [61]
(/build/reproducible-path/r-base-4.4.3/doc/manual/R-lang.cps) [62] Appendix A
[63] [64] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (70 pages, 391312 bytes).
Transcript written on R-lang.log.
make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
/usr/bin/make -k pdf
make[1]: Entering directory '/build/reproducible-path/r-base-4.4.3'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
PDF/LaTeX documentation: full reference index ...
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./fullrefman.tex
LaTeX2e <2024-11-01> patch level 2
L3 programming layer <2025-01-18>
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2024/06/29 v1.4n Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty)
(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/mathrsfs.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty
`inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex)))))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty
(/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
(/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(/usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
(/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))
(/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
(/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))))
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
Writing index file fullrefman.idx
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
No file fullrefman.aux.
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf-
dist/fonts/enc/dvips/base/8r.enc}]
No file fullrefman.toc.
(./base-pkg.tex
Chapter 1.
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/ursfs.fd)
[1{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc}]
[2]
Underfull \hbox (badness 6252) in paragraph at lines 149--157
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [
]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It

Underfull \hbox (badness 10000) in paragraph at lines 149--157
\T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T
1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base

Underfull \hbox (badness 10000) in paragraph at lines 149--157
[]\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base

Underfull \hbox (badness 10000) in paragraph at lines 149--157
\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z
i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As

Underfull \hbox (badness 4995) in paragraph at lines 149--157
[]\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by []
\T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 ,

[3]
[4]
[5]
Underfull \hbox (badness 1178) in paragraph at lines 337--340
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/
n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues

[6]
[7]
[8]
[9]
Underfull \hbox (badness 2556) in paragraph at lines 572--578
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ',

[10]
[11]
[12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[13{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}]
[14]
[15]
[16]
[17]
[18]
[19]
[20]
[21]
[22]
[23]
[24]
[25]
[26]
[27]
[28]
[29]
[30]
Underfull \vbox (badness 3803) has occurred while \output is active
[31]
[32]
[33]
[34]
[35]
[36]
Overfull \hbox (26.27782pt too wide) in paragraph at lines 2261--2261
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 

[37]
[38]
[39]
[40]
[41]
[42]
[43]
[44]
[45]
[46]
Underfull \hbox (badness 1721) in paragraph at lines 2926--2930
[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p
tm/m/n/10 ; fur-ther,

[47]
[48]
[49]
[50]
[51]
[52]
[53]
Underfull \hbox (badness 2538) in paragraph at lines 3404--3407
[]\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[]
[][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE,

[54]
[55]
[56]
[57]
[58]
[59]
[60]
[61]
[62]
[63]
[64]
[65]
[66]
Underfull \hbox (badness 10000) in paragraph at lines 4200--4202
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting

[67]
[68]
[69]
[70]
[71]
[72]
[73]
[74]
[75]
[76]
[77]
[78]
[79]
[80]
[81]
[82]
[83]
[84]
[85]
[86]
[87]
Underfull \hbox (badness 2521) in paragraph at lines 5551--5553
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by

[88]
[89]
[90]
[91]
[92]
[93]
[94]
[95]
[96]
[97]
[98]
[99]
[100]
[101]
[102]
[103]
[104]
[105]
[106]
[107]
Overfull \hbox (5.27168pt too wide) in paragraph at lines 6834--6834
 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 

[108]
[109]
[110]
[111]
[112]
[113]
[114]
[115]
[116]
[117]
[118]
[119]
Underfull \hbox (badness 1303) in paragraph at lines 7730--7737
[]\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n
/10 only. This reads the

[120]
Underfull \hbox (badness 2261) in paragraph at lines 7741--7746
\T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1
/zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen
et . net / ~conrad / software /

[121]
[122]
Underfull \vbox (badness 10000) has occurred while \output is active
[123]
[124]
[125]
[126]
[127]
[128]
[129]
[130]
[131]
Underfull \hbox (badness 2096) in paragraph at lines 8474--8478
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .

[132]
[133]
Underfull \hbox (badness 2351) in paragraph at lines 8589--8592
[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,

[134]
[135]
[136]
[137]
[138]
Underfull \hbox (badness 4479) in paragraph at lines 8906--8917
[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),

[139]
[140]
[141]
[142]
[143]
[144]
Underfull \hbox (badness 1629) in paragraph at lines 9334--9346
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

Underfull \hbox (badness 2875) in paragraph at lines 9334--9346
[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31

[145]
[146]
[147]
[148]
[149]
[150]
[151]
[152]
[153]
[154]
[155]
[156]
[157]
Underfull \hbox (badness 1178) in paragraph at lines 10200--10204
[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
 atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names 
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-

[158]
[159]
[160]
[161]
[162]
[163]
[164]
[165]
[166]
[167]
[168]
[169]
[170]
[171]
[172]
[173]
[174]
[175]
[176]
[177]
[178]
[179]
[180]
[181]
[182]
[183]
[184]
[185]
[186]
[187]
[188]
[189]
[190]
[191]
[192]
[193]
Underfull \hbox (badness 2744) in paragraph at lines 12540--12542
[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see

[194]
[195]
[196]
[197]
[198]
[199]
[200]
[201]
Underfull \vbox (badness 10000) has occurred while \output is active
[202]
[203]
[204]
[205]
[206]
[207]
[208]
[209]
[210]
[211]
[212]
[213]
[214]
[215]
[216]
[217]
[218]
[219]
[220]
[221]
[222]
[223]
[224]
[225]
[226]
Underfull \hbox (badness 2253) in paragraph at lines 14746--14748
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see

Underfull \hbox (badness 1490) in paragraph at lines 14781--14784
[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the

[227]
Underfull \hbox (badness 1565) in paragraph at lines 14863--14867
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and

[228]
Underfull \hbox (badness 4927) in paragraph at lines 14914--14916
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/zi4/m/n/10 fsep =

[229]
[230]
[231]
Underfull \hbox (badness 1466) in paragraph at lines 15065--15068
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and

[232]
Underfull \hbox (badness 10000) in paragraph at lines 15196--15200
[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 15207--15210
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /

[233]
[234]
[235]
[236]
[237]
Underfull \hbox (badness 3965) in paragraph at lines 15504--15508
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,

[238]
[239]
[240]
[241]
[242]
[243]
[244]
[245]
Underfull \hbox (badness 5260) in paragraph at lines 16006--16006
[]\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/
ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma
ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 ,

[246]
[247]
[248]
[249]
Underfull \hbox (badness 4429) in paragraph at lines 16296--16299
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for

[250]
[251]
Underfull \hbox (badness 10000) in paragraph at lines 16403--16405
[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/zi4/m/n/10 .format.zeros(*,

[252]
Underfull \hbox (badness 2035) in paragraph at lines 16476--16480
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 
R \T1/ptm/m/n/10 3.2.0: for use within

[253]
Underfull \vbox (badness 10000) has occurred while \output is active
[254]
[255]
[256]
[257]
[258]
[259]
[260]
[261]
[262]
Underfull \hbox (badness 2452) in paragraph at lines 17099--17103
[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 17099--17103
\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and

[263]
[264]
[265]
Underfull \hbox (badness 1092) in paragraph at lines 17273--17278
[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing

[266]
[267]
[268]
Underfull \hbox (badness 6741) in paragraph at lines 17526--17530
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,

[269]
[270]
[271]
[272]
[273]
[274]
[275]
[276]
[277]
[278]
[279]
Underfull \vbox (badness 3803) has occurred while \output is active
[280]
Underfull \vbox (badness 10000) has occurred while \output is active
[281]
[282]
[283]
[284]
[285]
[286]
[287]
[288]
[289]
[290]
Underfull \hbox (badness 1769) in paragraph at lines 18999--19002
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor

[291]
[292]
[293]
[294]
[295]
Underfull \hbox (badness 10000) in paragraph at lines 19308--19310
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /

Underfull \hbox (badness 2088) in paragraph at lines 19314--19323
[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /

[296]
[297]
[298]
[299]
[300]
[301]
[302]
[303]
[304]
[305]
Underfull \hbox (badness 1442) in paragraph at lines 19922--19924
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see

[306]
Underfull \hbox (badness 2452) in paragraph at lines 20018--20044
[][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 
as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt
m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 5726) in paragraph at lines 20018--20044
[][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en
vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma
trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][]

[307]
[308]
[309]
[310]
[311]
[312]
Underfull \hbox (badness 1248) in paragraph at lines 20416--20419
[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,

[313]
[314]
[315]
[316]
[317]
Underfull \hbox (badness 4739) in paragraph at lines 20683--20685
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see

[318]
[319]
[320]
[321]
[322]
Underfull \vbox (badness 10000) has occurred while \output is active
[323]
[324]
[325]
[326]
[327]
[328]
[329]
[330]
[331]
[332]
[333]
[334]
[335]
[336]
Underfull \hbox (badness 2469) in paragraph at lines 21851--21856
[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and

[337]
Underfull \hbox (badness 1675) in paragraph at lines 21938--21947
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3189) in paragraph at lines 21948--21961
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
 or empty, the

[338]
Underfull \hbox (badness 10000) in paragraph at lines 21996--21999
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-

Underfull \hbox (badness 4752) in paragraph at lines 21996--21999
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may 
be opened by

[339]
[340]
Underfull \hbox (badness 1014) in paragraph at lines 22130--22135
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if

[341]
[342]
[343]
[344]
[345]
[346]
[347]
[348]
[349]
[350]
[351]
[352]
[353]
Underfull \hbox (badness 1264) in paragraph at lines 22977--22985
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:

Underfull \hbox (badness 4441) in paragraph at lines 23012--23015
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,

[354]
[355]
[356]
[357]
[358]
[359]
[360]
[361]
[362]
[363]
[364]
[365]
[366]
Underfull \hbox (badness 5231) in paragraph at lines 23830--23832
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==

[367]
[368]
[369]
[370]
[371]
[372]
[373]
[374]
[375]
[376]
[377]
[378]
[379]
[380]
[381]
[382]
[383]
Underfull \hbox (badness 6380) in paragraph at lines 24940--24946
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress
ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-

Underfull \hbox (badness 1472) in paragraph at lines 24940--24946
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ 
_ Utils$[][]

[384]
[385]
[386]
[387]
[388]
[389]
[390]
[391]
[392]
Underfull \hbox (badness 2790) in paragraph at lines 25453--25456
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 25453--25456
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by

[393]
[394]
[395]
[396]
[397]
Underfull \hbox (badness 1194) in paragraph at lines 25781--25784
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls

[398]
[399]
[400]
Underfull \hbox (badness 2368) in paragraph at lines 25988--25994
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,

[401]
[402]
[403]
[404]
[405]
[406]
Underfull \hbox (badness 10000) in paragraph at lines 26378--26381
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by

[407]
[408]
[409]
[410]
[411]
[412]
[413]
[414]
[415]
[416]
Underfull \hbox (badness 10000) in paragraph at lines 27006--27008
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%

[417]
[418]
[419]
[420]
[421]
[422]
[423]
Underfull \hbox (badness 2443) in paragraph at lines 27497--27505
\T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob
-jects. For

[424]
[425]
[426]
[427]
[428]
[429]
[430]
Underfull \hbox (badness 1881) in paragraph at lines 27927--27930
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 27952--27954
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see


[431]
[432]
Underfull \hbox (badness 2142) in paragraph at lines 28093--28097
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 28150--28155
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

[433]
[434]
[435]
[436]
Underfull \hbox (badness 10000) in paragraph at lines 28446--28452
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 28446--28452
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 28446--28452
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 5878) in paragraph at lines 28459--28462
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p
tm/m/n/10 and

Underfull \hbox (badness 2689) in paragraph at lines 28485--28487
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 28531--28536
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly

[437]
Underfull \hbox (badness 2529) in paragraph at lines 28537--28548
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 28537--28548
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and

Underfull \hbox (badness 7203) in paragraph at lines 28549--28552
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and

[438]
[439]
[440]
[441]
[442]
Underfull \vbox (badness 10000) has occurred while \output is active
[443]
Underfull \hbox (badness 10000) in paragraph at lines 28967--28971
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],

[444]
[445]
Underfull \hbox (badness 10000) in paragraph at lines 29114--29117
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,

[446]
Underfull \hbox (badness 7925) in paragraph at lines 29195--29199
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to

Underfull \hbox (badness 1253) in paragraph at lines 29195--29199
[][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 ,
 which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) 
and [][][]\T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 2521) in paragraph at lines 29200--29209
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s,

[447]
[448]
[449]
[450]
[451]
[452]
[453]
[454]
[455]
[456]
[457]
[458]
[459]
[460]
[461]
[462]
Underfull \hbox (badness 2726) in paragraph at lines 30214--30217
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see

[463]
[464]
[465]
[466]
[467]
[468]
[469]
[470]
[471]
[472]
[473]
[474]
[475]
[476]
[477]
[478]
[479]
[480]
[481]
Underfull \vbox (badness 3803) has occurred while \output is active
[482]
[483]
[484]
[485]
[486]
[487]
[488]
[489]
[490]
Underfull \hbox (badness 1533) in paragraph at lines 32024--32027
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the

[491]
[492]
[493]
Underfull \hbox (badness 1163) in paragraph at lines 32195--32206
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in

[494]
[495]
[496]
[497]
[498]
[499]
[500]
Underfull \vbox (badness 3803) has occurred while \output is active
[501]
[502]
Underfull \hbox (badness 6300) in paragraph at lines 32741--32743
[]\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr
it-ing R Ex-ten-sions' man-ual:

[503]
[504]
[505]
[506]
[507]
[508]
[509]
[510]
[511]
[512]
[513]
[514]
[515]
[516]
[517]
[518]
[519]
Underfull \hbox (badness 10000) in paragraph at lines 33864--33868
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 33864--33868
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions 
of the matches are also re-turned by name.

Underfull \hbox (badness 3557) in paragraph at lines 33885--33887
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /

Underfull \hbox (badness 1122) in paragraph at lines 33888--33892
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /

[520]
[521]
Underfull \vbox (badness 10000) has occurred while \output is active
[522]
[523]
[524]
[525]
[526]
[527]
[528]
[529]
Underfull \hbox (badness 1655) in paragraph at lines 34490--34492
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for

[530]
[531]
[532]
[533]
[534]
[535]
[536]
[537]
[538]
[539]
[540]
[541]
[542]
[543]
[544]
[545]
[546]
[547]
[548]
Underfull \hbox (badness 2261) in paragraph at lines 35693--35698
[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if

[549]
[550]
[551]
[552]
[553]
[554]
[555]
[556]
[557]
[558]
[559]
[560]
[561]
[562]
[563]
[564]
Underfull \hbox (badness 3668) in paragraph at lines 36728--36732
[]\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in-
te-ger con-nec-tion de-scrip-tors for use with

[565]
Underfull \hbox (badness 10000) in paragraph at lines 36819--36830
\T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par
sing-[]c-[]command-[]line-[]arguments ?

[566]
[567]
[568]
[569]
[570]
[571]
[572]
[573]
[574]
[575]
[576]
[577]
[578]
[579]
[580]
[581]
[582]
[583]
[584]
[585]
[586]
[587]
[588]
[589]
[590]
Underfull \hbox (badness 10000) in paragraph at lines 38451--38453
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for

[591]
[592]
[593]
[594]
[595]
[596]
[597]
Underfull \hbox (badness 2913) in paragraph at lines 38869--38873
\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by

[598]
[599]
[600]
Underfull \hbox (badness 1072) in paragraph at lines 39115--39119
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

[601]
Underfull \hbox (badness 10000) in paragraph at lines 39120--39124
[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 39160--39166
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 39160--39166
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 39160--39166
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3009) in paragraph at lines 39175--39182
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

Underfull \hbox (badness 1038) in paragraph at lines 39175--39182
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 39175--39182
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 39175--39182
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from

[602]
[603]
[604]
[605]
Underfull \hbox (badness 2644) in paragraph at lines 39410--39414
[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an


[606]
[607]
[608]
Underfull \hbox (badness 1389) in paragraph at lines 39573--39580
[]\T1/ptm/m/n/10 a char-ac-ter string. The de-fault for the []\T1/zi4/m/n/10 fo
rmat []\T1/ptm/m/n/10 meth-ods is []\T1/zi4/m/n/10 "%Y-%m-%d

[609]
[610]
[611]
[612]
[613]
[614]
[615]
[616]
[617]
[618]
[619]
[620]
[621]
[622]
[623]
[624]
[625]
[626]
[627]
[628]
[629]
Underfull \hbox (badness 1158) in paragraph at lines 40939--40941
[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault

[630]
[631]
[632]
[633]
[634]
[635] [636]
[637]
[638]
[639]
Underfull \hbox (badness 1137) in paragraph at lines 41539--41545
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails

Underfull \hbox (badness 4967) in paragraph at lines 41557--41562
[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple

[640]
[641]
Underfull \hbox (badness 1616) in paragraph at lines 41677--41682
[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions

[642]
[643]
[644]
[645]
Underfull \vbox (badness 3803) has occurred while \output is active
[646]
[647]
[648]
[649]
[650]
Underfull \hbox (badness 1472) in paragraph at lines 42224--42227
[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see

[651]
[652]
[653]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 42436.


[654]
[655]
[656]
[657]
[658]
[659]
[660]
[661]
[662]
[663]
[664]
[665]
Underfull \hbox (badness 10000) in paragraph at lines 43175--43179
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca
n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4
/m/sl/10 length(bin) >

[666]
[667]
[668]
[669]
[670]
Underfull \hbox (badness 10000) in paragraph at lines 43534--43537
[][][]\T1/zi4/m/sl/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] 
[][]$https : / / developer . r-[]project . org /

[671]
[672]
[673]
Underfull \hbox (badness 10000) in paragraph at lines 43718--43722
[][][]\T1/zi4/m/sl/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s
l/10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 taskCallb
ackManager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/sl/10 https : / / developer .


[674]
[675]
[676]
[677]
[678]
[679]
[680]
[681]
[682]
[683]
Underfull \hbox (badness 10000) in paragraph at lines 44366--44369
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[]
[] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time
-[]zones /

[684]
[685]
[686]
[687]
[688]
[689]
Underfull \vbox (badness 10000) has occurred while \output is active
[690]
[691]
[692]
[693]
[694]
[695]
[696]
[697]
Underfull \hbox (badness 1990) in paragraph at lines 45282--45290
[]\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an
y er-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 45282--45290
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less

[698]
[699]
[700]
[701]
[702]
[703]
[704]
[705]
[706]
[707]
[708]
[709]
[710]
[711]
[712]
[713]
[714]
[715]
[716]
[717]
[718]
[719]
Underfull \hbox (badness 1014) in paragraph at lines 46719--46722
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me
-di-ately, even if

[720]
[721]
Underfull \hbox (badness 2401) in paragraph at lines 46852--46856
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][]("
warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a

[722]
[723]
Underfull \hbox (badness 3492) in paragraph at lines 46978--46980
[]\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/
ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e.,

[724]
[725]
Underfull \hbox (badness 2111) in paragraph at lines 47064--47069
\T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10
 is not empty, these are used as col-umn names.

[726]
[727]
[728]
Underfull \hbox (badness 4001) in paragraph at lines 47312--47314
[]\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard 
eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/sl/10 https : / / developer 
.

[729]
[730]
[731]
[732]
[733]
[734]
[735]
Underfull \hbox (badness 5417) in paragraph at lines 47713--47717
[]\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re
ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas

[736]
Underfull \hbox (badness 10000) in paragraph at lines 47774--47778
[]\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d
ard' reg-exps, in-clud-ing el-e-ments named

[737]) (./compiler-pkg.tex
[738]
Chapter 2.

[739]
[740]
[741]
[742]) (./datasets-pkg.tex
Chapter 3.

[743]
[744]
[745]
[746]
[747] [748]
[749]
[750]
[751]
[752]
[753]
[754]
[755]
[756]
[757]
[758]
[759]
Underfull \hbox (badness 1097) in paragraph at lines 1034--1038
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.

[760]
[761]
[762]
[763]
[764]
[765]
[766]
[767]
[768]
[769]
[770]
[771] [772]
[773]
[774]
[775]
[776]
[777] [778]
[779]
[780]
[781]
[782] [783]
[784]
[785]
[786]
[787]
[788]
[789]
[790]
[791]
[792]
[793]
[794]
[795]
[796]
[797]
[798]
[799]
[800]
[801]
Overfull \hbox (2.27475pt too wide) in paragraph at lines 3524--3524
 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis
t.html#Geographic%20Centers[] 

[802]
[803]
[804]
[805]
[806]
[807]
[808]
[809]
[810]
[811]
[812]
[813]
[814]
[815]
[816]
[817]
[818]
[819]
[820]
[821]
[822]
[823]
[824]
[825]) (./grDevices-pkg.tex
[826]
Chapter 4.

[827]
[828]
[829]
[830]
[831]
Underfull \hbox (badness 2221) in paragraph at lines 282--286
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[]
\T1/ptm/m/n/10 , with iden-ti-cal mean-ing to

Underfull \hbox (badness 10000) in paragraph at lines 297--302
[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/sl/10 axisTicks[][][]() []\T1
/ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1
/ptm/m/n/10 in

[832]
[833]
[834]
[835]
[836]
[837]
[838]
[839]
[840]
Underfull \hbox (badness 1424) in paragraph at lines 901--903
[][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a
nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b
e spec-i-fied as

[841]
[842]
[843]
[844]
[845]
[846]
Underfull \hbox (badness 5175) in paragraph at lines 1229--1231
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in

[847]
[848]
Underfull \hbox (badness 2512) in paragraph at lines 1348--1350
[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar
chive . org / web / 20190613001950 / http : / / efg2 . com /

[849]
[850]
[851]
[852]
[853]
Underfull \hbox (badness 1490) in paragraph at lines 1648--1653
\T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and 
[][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []
\T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10
 and

Underfull \hbox (badness 3302) in paragraph at lines 1661--1665
[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of

[854]
[855]
[856]
[857]
[858]
[859]
Underfull \hbox (badness 1325) in paragraph at lines 2076--2086
[]\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png
alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/
m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm
/m/n/10 ,

[860]
[861]
Underfull \hbox (badness 10000) in paragraph at lines 2188--2190
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of

[862]
[863]
[864]
Underfull \hbox (badness 6758) in paragraph at lines 2376--2379
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are

[865]
[866]
[867]
[868]
[869]
[870]
[871]
[872]
[873]
[874]
[875]
[876]
Underfull \hbox (badness 10000) in paragraph at lines 3132--3133


[877]
[878]
[879]
[880]
[881]
[882]
[883]
[884]
[885]
[886]
[887]
[888]
Underfull \vbox (badness 3803) has occurred while \output is active
[889]
[890]
[891]
[892]
Underfull \vbox (badness 10000) has occurred while \output is active
[893]
[894]
[895]
[896]
Underfull \hbox (badness 1418) in paragraph at lines 4410--4417
\T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H
elvetica-Narrow"[]\T1/ptm/m/n/10 ,

[897]
[898]
[899]
[900]
[901]
[902]
[903]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.4875 \aliasA{symbol}{plotmath}{symbol}
                                         [904] [905]
[906]
[907]
Underfull \vbox (badness 3803) has occurred while \output is active
[908]
[909]
Underfull \hbox (badness 1584) in paragraph at lines 5268--5270
[]\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1
/zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See

Underfull \hbox (badness 1067) in paragraph at lines 5272--5279
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-

[910]
[911]
[912]
[913]
Underfull \hbox (badness 1377) in paragraph at lines 5574--5579
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues

[914]
[915]
Underfull \hbox (badness 1377) in paragraph at lines 5678--5683
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and

[916]
Underfull \hbox (badness 7344) in paragraph at lines 5747--5749
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso

[917]
[918]
Underfull \hbox (badness 2035) in paragraph at lines 5886--5895
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 5886--5895
\T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti
ca-Narrow"[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 5886--5895
[]\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P
alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1
/zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/
ptm/m/n/10 ,

[919]
Underfull \hbox (badness 10000) in paragraph at lines 5953--5958
[]\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/
zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu /

[920]
[921]
[922]
Underfull \hbox (badness 1546) in paragraph at lines 6093--6101
[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n
/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 ,

[923]
[924]
[925]
[926]
[927]
[928]
Underfull \hbox (badness 6625) in paragraph at lines 6537--6540
[]\T1/ptm/m/n/10 Murrell, P., Ooms, J., Al-laire, J.J. (2015), "Record-ing and 
Re-play-ing the Graph-

[929]
[930]
Underfull \hbox (badness 10000) in paragraph at lines 6641--6644
[]\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (
red/green/blue) into HSV space

[931]
[932]
[933]
[934]
Overfull \hbox (9.73488pt too wide) in paragraph at lines 6878--6878
 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro
blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/
zi4/m/n/9 ):[] 

[935]
[936]
[937]
[938]
[939]
[940]
[941]
[942]
[943]
[944]
Underfull \hbox (badness 1189) in paragraph at lines 7507--7509
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of

[945]
Underfull \hbox (badness 10000) in paragraph at lines 7612--7614
[]\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C
JK lan-guages and

[946]
[947]
[948]
[949]
[950]
Underfull \hbox (badness 3780) in paragraph at lines 7927--7933
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/s
l/10 "AvantGarde"[]\T1/ptm/m/n/10 ,

[951]
[952]
[953]
[954]
[955]
[956]) (./graphics-pkg.tex
Chapter 5.

[957]
[958]
[959]
[960]
[961]
[962]
[963]
[964]
[965]
[966]
[967]
Underfull \vbox (badness 3803) has occurred while \output is active
[968]
[969]
[970]
[971]
[972]
[973]
Overfull \hbox (12.71341pt too wide) in paragraph at lines 1037--1037
 []        \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 

[974]
[975]
[976]
[977]
[978]
[979]
Underfull \hbox (badness 4634) in paragraph at lines 1410--1413
[][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor
ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1
/ptm/m/n/10 ,

[980]
[981]
[982]
[983]
[984]
[985]
[986]
[987]
[988]
[989]
[990]
[991]
[992]
[993]
[994]
[995]
[996]
Underfull \hbox (badness 1728) in paragraph at lines 2388--2390
[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10
 "n" []\T1/ptm/m/n/10 to sup-press and see also

[997]
Underfull \hbox (badness 1009) in paragraph at lines 2481--2488
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to

[998]
[999]
[1000]
[1001]
[1002]
[1003]
[1004]
[1005]
[1006]
[1007]
[1008]
[1009]
[1010]
[1011]
[1012]
[1013]
[1014]
[1015]
[1016]
[1017]
[1018]
[1019]
[1020]
Underfull \vbox (badness 10000) has occurred while \output is active
[1021]
Underfull \vbox (badness 10000) has occurred while \output is active
[1022]
[1023]
[1024]
[1025]
[1026]
[1027]
Underfull \vbox (badness 3803) has occurred while \output is active
[1028]
[1029]
[1030]
[1031]
[1032]
[1033]
[1034]
Underfull \hbox (badness 3229) in paragraph at lines 4733--4738
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see

[1035]
[1036]
[1037]
[1038]
[1039]
Underfull \hbox (badness 1107) in paragraph at lines 5233--5239
[]\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc
aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c
h),

[1040]
[1041]
Underfull \hbox (badness 10000) in paragraph at lines 5362--5365


[1042 </build/reproducible-path/r-base-4.4.3/library/graphics/help/figures/mai.
pdf>]
Underfull \hbox (badness 10000) in paragraph at lines 5423--5425


[1043 </build/reproducible-path/r-base-4.4.3/library/graphics/help/figures/oma.
pdf>]
[1044]
[1045]
[1046]
[1047]
[1048]
[1049]
[1050]
[1051]
[1052]
[1053]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6097 \aliasA{plot}{plot.default}{plot}
                                        
[1054]
[1055]
[1056]
[1057]
[1058]
[1059]
[1060]
[1061]
[1062]
[1063]
[1064]
[1065]
[1066]
[1067]
Overfull \hbox (31.57222pt too wide) in paragraph at lines 6997--6998
[][] 

[1068 </build/reproducible-path/r-base-4.4.3/library/graphics/help/figures/pch.
pdf>]
[1069]
Underfull \vbox (badness 3803) has occurred while \output is active
[1070]
[1071]
[1072]
[1073]
[1074]
[1075]
[1076]
[1077]
[1078]
[1079]
[1080]
[1081]
[1082]
[1083]
[1084]
[1085]
[1086]
[1087]
[1088]
[1089]
[1090]
[1091]
[1092]
[1093]
[1094]
[1095]
[1096]
[1097]
[1098]
[1099]
[1100]
[1101]
[1102]
Underfull \hbox (badness 4954) in paragraph at lines 9109--9111
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/sl/10 par(c("font.sub",

Underfull \hbox (badness 1019) in paragraph at lines 9111--9113
[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa
r(c("font.lab", "cex.lab",

[1103]
[1104]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9191 \HeaderA{units}{Graphical Units}{units}
                                              
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9191 \HeaderA{units}{Graphical Units}{units}
                                              
[1105]
[1106]
[1107]
[1108]) (./grid-pkg.tex
Chapter 6.

[1109]
[1110]
[1111]
[1112]
[1113]
[1114]
[1115]
[1116]
[1117]
Underfull \hbox (badness 2680) in paragraph at lines 551--554
[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an
d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal
-cu-la-tion of

[1118]
[1119]
[1120]
[1121]
[1122] [1123]
[1124]
[1125]
[1126]
[1127]
[1128]
Underfull \hbox (badness 4279) in paragraph at lines 1188--1197
[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/
ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T
1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi
ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 ,

[1129]
[1130]
[1131]
[1132]
[1133]
[1134]
[1135]
[1136]
[1137]
[1138]
[1139]
[1140]
[1141]
[1142]
[1143]
[1144]
[1145]
[1146]
[1147]
[1148]
[1149]
[1150]
[1151]
[1152]
[1153]
[1154]
[1155]
[1156]
[1157]
[1158]
[1159]
[1160]
Underfull \hbox (badness 10000) in paragraph at lines 3103--3105
[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see

[1161]
[1162]
[1163]
[1164]
[1165]
[1166]
[1167]
[1168]
[1169]
[1170]
[1171]
[1172]
[1173]
[1174]
[1175]
[1176]
Underfull \vbox (badness 10000) has occurred while \output is active
[1177]
[1178]
[1179]
[1180]
[1181]
[1182]
[1183]
[1184]
[1185]
[1186]
[1187]
[1188]
[1189]
[1190]
Underfull \hbox (badness 1067) in paragraph at lines 4842--4845
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only

[1191]
[1192]
[1193]
[1194]
[1195]
[1196]
Underfull \hbox (badness 7256) in paragraph at lines 5193--5195
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by

[1197]
[1198]
[1199]
[1200]
[1201]
[1202]
[1203]
Underfull \hbox (badness 2142) in paragraph at lines 5647--5651
[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/
10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or

[1204]
[1205]
Underfull \hbox (badness 4699) in paragraph at lines 5729--5734
[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o
b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 
and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a

[1206]
[1207]
[1208]
[1209]
[1210]
[1211]
[1212]
[1213]
[1214]
[1215]
[1216]
[1217]
[1218]
[1219]
[1220]
[1221]
[1222]
[1223]
[1224]
[1225]
[1226]
[1227]
[1228]
[1229]
[1230]
[1231]
[1232]
[1233]
[1234]
[1235]
[1236]
[1237]) (./methods-pkg.tex
[1238]
Chapter 7.

[1239]
[1240]
[1241]
[1242]
[1243]
[1244]
[1245]
[1246]
Underfull \vbox (badness 10000) has occurred while \output is active
[1247]
Underfull \vbox (badness 10000) has occurred while \output is active
[1248]
[1249]
[1250]
[1251]
[1252]
[1253]
[1254]
[1255]
[1256]
[1257]
Underfull \hbox (badness 2237) in paragraph at lines 1384--1386
[]\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te
nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s
l/10 "package"[]\T1/ptm/m/n/10 , also of class

[1258]
[1259]
[1260]
[1261]
[1262]
[1263]
[1264]
[1265]
[1266]
Underfull \hbox (badness 10000) in paragraph at lines 1980--1985
[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n
/10 can be an ob-ject of class

Underfull \hbox (badness 1038) in paragraph at lines 1980--1985
\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/
m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the

[1267]
[1268]
[1269]
Underfull \hbox (badness 2213) in paragraph at lines 2212--2217
[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/sl/10 where =

[1270]
[1271]
[1272]
[1273]
[1274]
Underfull \hbox (badness 10000) in paragraph at lines 2572--2575
[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] []
\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10
 cre-ate ob-jects of class

[1275]
[1276]
Underfull \hbox (badness 1132) in paragraph at lines 2712--2716
[]\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi
4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10
 slot of the re-turned re-sult is in

[1277]
Underfull \hbox (badness 1033) in paragraph at lines 2748--2753
\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 
re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1
0 re-stores the

[1278]
[1279]
[1280]
[1281]
[1282]
[1283]
[1284]
Underfull \hbox (badness 1102) in paragraph at lines 3305--3307
[]\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string
 name of the pack-age (with-out the ex-tra-ne-ous

[1285]
[1286]
[1287]
[1288]
[1289]
Underfull \hbox (badness 10000) in paragraph at lines 3642--3651
[]\T1/ptm/m/n/10 The

[1290]
[1291]
Underfull \hbox (badness 10000) in paragraph at lines 3762--3763
[] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi
tude = "numeric",

[1292]
Underfull \hbox (badness 10000) in paragraph at lines 3846--3847
[]\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character"
), contains =

[1293]
[1294]
[1295]
[1296]
[1297]
[1298]
[1299]
[1300]
[1301]
[1302]
Underfull \hbox (badness 1769) in paragraph at lines 4477--4483
[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10
 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar


Underfull \hbox (badness 1939) in paragraph at lines 4477--4483
[]\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [
][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u
sed by

[1303]
[1304]
[1305]
[1306]
[1307]
[1308]
[1309]
[1310]
[1311]
[1312]
Underfull \vbox (badness 10000) has occurred while \output is active
[1313]
[1314]
[1315]
Underfull \hbox (badness 4036) in paragraph at lines 5442--5445
[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m
/n/10 the method to use in re-sponse to a

[1316]
[1317]
Underfull \hbox (badness 3803) in paragraph at lines 5517--5519
[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to

[1318]
[1319]
[1320]
Underfull \hbox (badness 1087) in paragraph at lines 5748--5753
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing

[1321]
[1322]
[1323]
[1324]
[1325]
[1326]
[1327]
[1328]
[1329]
Underfull \hbox (badness 1675) in paragraph at lines 6455--6461
[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe
fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class

[1330]
[1331]
[1332]
[1333]
Underfull \vbox (badness 10000) has occurred while \output is active
[1334]
[1335]
[1336]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has 
been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6976 \aliasA{S4}{S3Part}{S4}
                              
[1337]
[1338]
[1339]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7232 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7234 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7235 \aliasA{Math}{S4groupGeneric}{Math}
                                          
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7237 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7238 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                
[1340]
Underfull \hbox (badness 2050) in paragraph at lines 7299--7303
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing

[1341]
[1342]
[1343]
Underfull \hbox (badness 1286) in paragraph at lines 7487--7489
[]\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o
nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions,
 typ-i-cally

[1344]
[1345]
[1346]
[1347]
[1348]
[1349]
[1350]
[1351]
[1352]
[1353]
[1354]
[1355]
[1356]
[1357]
[1358]
[1359]
[1360]
[1361]
[1362]
[1363]
[1364]
[1365]
[1366]
[1367]
[1368]
[1369]
[1370]
Underfull \vbox (badness 10000) has occurred while \output is active
[1371]
[1372]
[1373]
[1374]
[1375]
[1376]
[1377]
[1378]
[1379]
[1380]
[1381]
[1382]
[1383]
[1384]
Underfull \hbox (badness 1158) in paragraph at lines 10494--10497
[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/zi4/m/sl/10 https : / / johnmchambers . su . domains /

[1385]
Underfull \hbox (badness 1852) in paragraph at lines 10572--10576
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,

[1386]
[1387]
[1388]
[1389]) (./parallel-pkg.tex
[1390]
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' []
[]RNG[][][]: see

[1391]
[1392]
[1393]
[1394]
[1395]
Underfull \hbox (badness 1320) in paragraph at lines 300--303
[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.

[1396]
[1397]
[1398]
[1399]
[1400]
[1401]
[1402]
[1403]
[1404]
[1405]
[1406]
[1407]
[1408]
[1409]
[1410]
[1411]
[1412]
Underfull \hbox (badness 3386) in paragraph at lines 1400--1403
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10
 .Random.seed []\T1/ptm/m/n/10 when the

[1413]
[1414]) (./splines-pkg.tex
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 <bates@stat.wisc.edu> \T1/ptm
/m/n/10 and William N. Ven-ables

[1415]
[1416]
[1417]
[1418]
[1419]
[1420]
[1421]
[1422]
[1423]
[1424]
[1425]
[1426]
[1427]
[1428]
[1429]
[1430]) (./stats-pkg.tex
Chapter 10.

[1431]
[1432]
[1433]
[1434]
[1435]
[1436]
[1437]
[1438]
[1439]
[1440]
[1441]
[1442]
[1443]
[1444]
Underfull \hbox (badness 1412) in paragraph at lines 901--903
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 
lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo
r

[1445]
[1446]
[1447]
[1448]
[1449]
[1450]
[1451]
[1452]
Underfull \hbox (badness 2503) in paragraph at lines 1389--1392
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1453]
[1454]
[1455]
[1456]
[1457]
[1458]
[1459]
[1460]
[1461]
[1462]
[1463]
[1464]
[1465]
[1466]
[1467]
[1468]
[1469]
[1470]
[1471]
[1472]
[1473]
[1474]
[1475]
[1476]
[1477]
[1478]
[1479]
[1480]
[1481]
[1482]
[1483]
[1484]
[1485]
[1486]
Underfull \hbox (badness 2503) in paragraph at lines 3561--3564
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1487]
[1488]

Package amsmath Warning: Foreign command \atopwithdelims;
(amsmath)                \frac or \genfrac should be used instead
(amsmath)                 on input line 3674.


[1489]
[1490]
[1491]
[1492]
[1493]
[1494]
[1495]
[1496]
[1497]
[1498]
[1499]
[1500]
[1501]
[1502]
[1503]
[1504]
[1505]
[1506]
Underfull \hbox (badness 3989) in paragraph at lines 4820--4827
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =

[1507]
[1508]
[1509]
[1510]
[1511]
[1512]
[1513]
[1514]
[1515]
[1516]
Underfull \hbox (badness 2556) in paragraph at lines 5474--5477
[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[
]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 
"filter"[]\T1/ptm/m/n/10 . For

[1517]
[1518]
[1519]
[1520]
[1521]
[1522]
[1523]
Underfull \hbox (badness 2503) in paragraph at lines 5886--5890
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1524]
[1525]
[1526]
[1527]
[1528]
[1529]
[1530]
[1531]
[1532]
[1533]
[1534]
[1535]
[1536]
Underfull \hbox (badness 7081) in paragraph at lines 6678--6681
[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c
an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in
g method

Underfull \hbox (badness 10000) in paragraph at lines 6682--6684
[]\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-
gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also

[1537]
[1538]
[1539]
[1540]
[1541]
[1542]
Underfull \vbox (badness 10000) has occurred while \output is active
[1543]
[1544]
[1545]
Underfull \vbox (badness 10000) has occurred while \output is active
[1546]
[1547]
[1548]
[1549]
[1550]
Underfull \hbox (badness 10000) in paragraph at lines 7578--7581
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/zi4/m/sl/10 dist[][][]()[]\T1/ptm/m/n/10 , the

[1551]
[1552]
[1553]
[1554]
[1555]
[1556]
Underfull \vbox (badness 3803) has occurred while \output is active
[1557]
[1558]
[1559]
[1560]
[1561]
[1562]
[1563]
[1564]
[1565]
[1566]
[1567]
[1568]
[1569]
[1570]
[1571]
[1572]
Underfull \vbox (badness 3803) has occurred while \output is active
[1573]
[1574]
[1575]
[1576]
[1577]
[1578]
Underfull \hbox (badness 2626) in paragraph at lines 9275--9278
[]\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\
T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If

[1579]
Underfull \hbox (badness 2503) in paragraph at lines 9382--9386
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1580]
[1581]
[1582]
[1583]
[1584]
[1585]
[1586]
[1587]
[1588]
[1589]
[1590]
[1591]
[1592]
[1593]
[1594]
[1595]
[1596]
[1597]
[1598]
[1599]
[1600]
Underfull \hbox (badness 4518) in paragraph at lines 10730--10735
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1601]
[1602]
[1603]
[1604]
[1605]
Underfull \hbox (badness 2142) in paragraph at lines 11092--11095
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

Underfull \hbox (badness 1253) in paragraph at lines 11111--11114
[]\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t
o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac
h IWLS it-er-a-tion. Hence,

[1606]
Underfull \hbox (badness 1708) in paragraph at lines 11173--11177
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:

[1607]
[1608]
[1609]
[1610]
[1611]
[1612]
Underfull \hbox (badness 1694) in paragraph at lines 11569--11572
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

[1613]
[1614]
[1615]
[1616]
[1617]
[1618]
[1619]
[1620]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.12050 \aliasA{hat}{influence.measures}{hat}
                                             
[1621]
[1622]
Underfull \hbox (badness 1484) in paragraph at lines 12195--12197
[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists
 mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing

[1623]
[1624]
[1625]
[1626]
[1627]
[1628]
[1629]
[1630]
[1631]
[1632]
Underfull \hbox (badness 10000) in paragraph at lines 12782--12784
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d
efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit =

[1633]
[1634]
[1635]
[1636]
[1637]
Underfull \hbox (badness 2894) in paragraph at lines 13124--13128
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method

[1638]
[1639]
[1640]
[1641]
[1642]
[1643]
[1644]
Underfull \hbox (badness 1496) in paragraph at lines 13552--13558
[]\T1/ptm/m/n/10 Gunar Schr�er and Di-et-rich Tren-kler (1995). Ex-act and Ran-
dom-iza-tion Dis-tri-bu-tions of

[1645]
[1646]
[1647]
[1648]
[1649]
[1650]
Underfull \hbox (badness 4518) in paragraph at lines 13955--13960
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1651]
[1652]
[1653]
[1654]
[1655]
[1656]
[1657]
[1658]
[1659]
[1660]
Underfull \hbox (badness 4518) in paragraph at lines 14617--14622
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1661]
[1662]
[1663]
Underfull \hbox (badness 6412) in paragraph at lines 14757--14761
[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int
erpolate", statistics =

Underfull \hbox (badness 1199) in paragraph at lines 14764--14766
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is

[1664]
[1665]
[1666]
[1667]
[1668]
[1669]
[1670]
[1671]
[1672]
[1673]
[1674]
[1675]
[1676]
[1677]
[1678]
[1679]
[1680]
[1681]
Underfull \hbox (badness 2503) in paragraph at lines 15841--15845
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1682]
[1683]
[1684]
[1685]
[1686]
[1687]
[1688]
[1689]
Underfull \hbox (badness 10000) in paragraph at lines 16354--16360
[]\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to

Underfull \hbox (badness 1867) in paragraph at lines 16354--16360
[]\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model.
response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\
T1/ptm/m/n/10 sums any terms

[1690]
[1691]
[1692]
[1693]
[1694]
[1695]
[1696]
[1697]
[1698]
[1699]
[1700]
[1701]
[1702]
[1703]
[1704]
[1705]
[1706]
[1707]
[1708]
[1709]
[1710]
[1711]
[1712]
[1713]
[1714]
[1715]
[1716]
Underfull \hbox (badness 1158) in paragraph at lines 18012--18015
[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T
1/ptm/m/n/10 as the data ar-gu-ment. The ac-

[1717]
[1718]
Underfull \vbox (badness 10000) has occurred while \output is active
[1719]
Underfull \vbox (badness 10000) has occurred while \output is active
[1720]
[1721]
[1722]
[1723]
[1724]
[1725]
[1726]
[1727]
[1728]
[1729]
[1730]
[1731]
[1732]
[1733]
Underfull \hbox (badness 1377) in paragraph at lines 19055--19060
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 19060--19063
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 2343) in paragraph at lines 19073--19077
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 3471) in paragraph at lines 19073--19077
\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) +
 reltol) []\T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 19081--19085
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if

[1734]
[1735]
[1736]
Underfull \vbox (badness 10000) has occurred while \output is active
[1737]
Overfull \hbox (15.73795pt too wide) in paragraph at lines 19306--19306
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

Overfull \hbox (3.75941pt too wide) in paragraph at lines 19309--19309
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 

[1738]
[1739]
[1740]
[1741]
[1742]
[1743]
[1744]
Underfull \hbox (badness 1337) in paragraph at lines 19771--19774
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1745]
[1746]
[1747]
[1748]
[1749]
[1750]
[1751]
[1752]
[1753]
Underfull \hbox (badness 10000) in paragraph at lines 20240--20246
\T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty
 = cook.lty, col = cook.col, text.col

[1754]
[1755]
[1756]
[1757]
[1758]
[1759]
[1760]
Underfull \hbox (badness 1194) in paragraph at lines 20667--20670
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence

[1761]
[1762]
[1763]
[1764]
[1765]
[1766]
Underfull \hbox (badness 2503) in paragraph at lines 21045--21048
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3919) in paragraph at lines 21072--21074
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" 
[]\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson

[1767]
[1768]
[1769]
[1770]
[1771]
[1772]
[1773]
[1774]
[1775]
[1776]
[1777]
[1778]
[1779]
[1780]
[1781]
[1782]
[1783]
[1784]
Underfull \hbox (badness 10000) in paragraph at lines 22150--22156
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,

[1785]
[1786]
[1787]
[1788]
[1789]
[1790]
[1791]
[1792]
[1793]
[1794]
[1795]
[1796]
[1797]
[1798]
[1799]
[1800]
[1801]
[1802]
[1803]
[1804]
[1805]
[1806]
[1807]
[1808]
[1809]
Underfull \hbox (badness 1337) in paragraph at lines 23626--23632
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1810]
[1811]
[1812]
[1813]
[1814]
[1815]
[1816]
[1817]
Underfull \hbox (badness 1436) in paragraph at lines 24116--24119
\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2,

[1818]
Underfull \hbox (badness 10000) in paragraph at lines 24254--24255
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o
rg / wiki / Quantile # Estimating _ quantiles _ from _ a _

[1819]
[1820]
[1821]
[1822]
[1823]
[1824]
[1825]
[1826]
[1827]
[1828]
[1829]
[1830]
[1831]
[1832]
[1833]
[1834]
Underfull \hbox (badness 1824) in paragraph at lines 25224--25230
[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are 
first re-placed by al-ter-

Underfull \hbox (badness 1033) in paragraph at lines 25224--25230
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where

[1835]
Underfull \hbox (badness 10000) in paragraph at lines 25245--25248
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = 
runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] =

[1836]
[1837]
[1838]
[1839]
[1840]
[1841]
[1842]
[1843]
[1844]
Underfull \hbox (badness 2165) in paragraph at lines 25820--25825
[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T
1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,

[1845]
[1846]
[1847]
[1848]
Underfull \hbox (badness 1867) in paragraph at lines 26030--26032
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

Underfull \hbox (badness 10000) in paragraph at lines 26046--26050
[]\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb
ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <-

[1849]
[1850]
[1851]
[1852]
[1853]
[1854]
[1855]
[1856]
[1857]
[1858]
[1859]
[1860]
[1861]
[1862]
[1863]
[1864]
[1865]
[1866]
[1867]
[1868]
[1869]
[1870]
[1871]
[1872]
[1873]
Underfull \vbox (badness 10000) has occurred while \output is active
[1874]
[1875]
Underfull \hbox (badness 3514) in paragraph at lines 27698--27703
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1876]
[1877]
[1878]
[1879]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 27932--27932
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 

Underfull \hbox (badness 3514) in paragraph at lines 27968--27974
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1880]
Overfull \hbox (14.22568pt too wide) in paragraph at lines 28028--28028
 []            \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=
1e-11, nDcentral=TRUE), trace=TRUE)[] 

[1881]
[1882]
[1883]
[1884]
Underfull \hbox (badness 3514) in paragraph at lines 28201--28206
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1885]
Underfull \hbox (badness 3514) in paragraph at lines 28288--28293
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1886]
Underfull \hbox (badness 3514) in paragraph at lines 28353--28358
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1887]
[1888]
Underfull \hbox (badness 3514) in paragraph at lines 28447--28452
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1889]
[1890]
Underfull \hbox (badness 6691) in paragraph at lines 28539--28544
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[]
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1891]
[1892]
[1893]
[1894]
[1895]
[1896]
[1897]
[1898]
Underfull \hbox (badness 4024) in paragraph at lines 29026--29029
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which

[1899]
[1900]
[1901]
[1902]
[1903]
[1904]
[1905]
[1906]
[1907]
[1908]
Underfull \hbox (badness 5431) in paragraph at lines 29629--29631
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if

[1909]
[1910]
[1911]
Underfull \hbox (badness 5431) in paragraph at lines 29839--29842
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if

[1912]
[1913]
[1914]
[1915]
[1916]
[1917]
Underfull \hbox (badness 1337) in paragraph at lines 30154--30158
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1918]
[1919]
Underfull \hbox (badness 1127) in paragraph at lines 30291--30294
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate
 only for

[1920]
[1921]
[1922]
Underfull \hbox (badness 1616) in paragraph at lines 30497--30500
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when

[1923]
[1924]
[1925]
[1926]
[1927]
[1928]
[1929]
[1930]
[1931]
[1932]
[1933]
[1934]
[1935]
[1936]
[1937]
[1938]
[1939]
[1940]
[1941]
[1942]
[1943]
Underfull \hbox (badness 3557) in paragraph at lines 31724--31728
[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non-
[]\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re
ct []\T1/zi4/m/sl/10 interval =

[1944]
[1945]
[1946]
Underfull \vbox (badness 10000) has occurred while \output is active
[1947]
[1948]
[1949]
Underfull \hbox (badness 1337) in paragraph at lines 32091--32095
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1950]
[1951]
[1952]
[1953]
[1954]
[1955]
[1956]
[1957]
[1958]
Underfull \hbox (badness 1337) in paragraph at lines 32619--32623
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1959]
[1960]
[1961]
Overfull \hbox (0.71648pt too wide) in paragraph at lines 32827--32827
 []\T1/zi4/m/n/9 wilcox.test( 4:2,      3:1,     paired=TRUE) # Warning:  canno
t compute exact p-value with ties[] 

[1962]
[1963]
[1964]
Overfull \hbox (19.71954pt too wide) in paragraph at lines 32988--32988
 []      \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep
s = getOption("ts.eps"), ...)[] 

[1965]
[1966]
[1967]
[1968]
[1969]) (./stats4-pkg.tex
[1970]
Chapter 11.

[1971]
[1972]
[1973]
Underfull \vbox (badness 10000) has occurred while \output is active
[1974]
Underfull \vbox (badness 10000) has occurred while \output is active
[1975]
[1976]
[1977]
[1978]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas
h.methods}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                  
[1979]
[1980]
[1981]) (./tcltk-pkg.tex
[1982]
Chapter 12.

[1983]
[1984]
[1985]
[1986]
[1987]
[1988]
[1989]
Underfull \vbox (badness 10000) has occurred while \output is active
[1990]
Underfull \vbox (badness 10000) has occurred while \output is active
[1991]
Underfull \hbox (badness 1546) in paragraph at lines 672--679
[]\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-
ing any Tk or Tcl com-mand by sim-ply run-ning

[1992]
[1993]
[1994]
[1995]
[1996]
Underfull \vbox (badness 10000) has occurred while \output is active
[1997]
[1998]
[1999]
[2000]
[2001]
[2002]
[2003]
[2004]) (./tools-pkg.tex
Chapter 13.

[2005]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.


[2006]
Underfull \hbox (badness 3039) in paragraph at lines 167--170
[]\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil
l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas

[2007]
[2008]
Underfull \hbox (badness 1308) in paragraph at lines 288--301
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

Underfull \hbox (badness 4967) in paragraph at lines 288--301
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b
ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 288--301
[]\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format
InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 
, []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 288--301
[]\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi
s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and

[2009]
[2010]
Underfull \hbox (badness 3039) in paragraph at lines 392--394
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi
ne to use. Over-rides any

[2011]
Underfull \hbox (badness 1142) in paragraph at lines 464--468
\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory

[2012]
[2013]
[2014]
[2015]
[2016]
[2017]
[2018] [2019]
[2020]
[2021]
[2022]
[2023]
[2024]
Underfull \hbox (badness 1014) in paragraph at lines 1220--1222
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

Underfull \hbox (badness 7238) in paragraph at lines 1226--1228
[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous

[2025]
Underfull \hbox (badness 10000) in paragraph at lines 1263--1266
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1263--1266
[]\T1/zi4/m/sl/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and 
[]\T1/zi4/m/sl/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,

[2026]
[2027]
[2028]
[2029]
[2030]
[2031]
Underfull \hbox (badness 10000) in paragraph at lines 1637--1640
[]\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/sl/10 CRAN_aliases_db[]\T1/ptm
/m/n/10 , []\T1/zi4/m/sl/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10
 CRAN_current_db []\T1/ptm/m/n/10 and

[2032]
[2033]
Underfull \hbox (badness 4096) in paragraph at lines 1756--1764
\T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

Underfull \hbox (badness 1082) in paragraph at lines 1766--1768
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 for all known trees (see

[2034]
[2035]
[2036]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1967 \aliasA{GSC}{find\_gs\_cmd}{GSC}
                                       
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC
MD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1968 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                  
[2037]
[2038]
[2039]
[2040]
[2041]
[2042]
[2043]
[2044]
Underfull \hbox (badness 3386) in paragraph at lines 2442--2445
[]\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/sl/10 as.Rconcordance []\T1
/ptm/m/n/10 searches for strings match-ing the pat-tern of

[2045]
[2046]
Underfull \hbox (badness 4096) in paragraph at lines 2582--2590
\T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

[2047]
[2048]
[2049]
[2050]
[2051]
[2052]
[2053]
[2054]
[2055]
[2056]
[2057]
[2058]
[2059]
[2060]
[2061]
Underfull \hbox (badness 1424) in paragraph at lines 3516--3518
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
-tor of links, as re-turned by

[2062]
[2063]
[2064]
[2065]
[2066]
[2067]
[2068]
[2069]
[2070]
[2071]
[2072]
Underfull \hbox (badness 10000) in paragraph at lines 4232--4234
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,

[2073]
[2074]
[2075]
Underfull \hbox (badness 10000) in paragraph at lines 4388--4391
[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/sl/10 texi2dvi []\T1/ptm/m/n/10 
5.0 and later; []\T1/zi4/m/sl/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-
tion

[2076]
[2077]
[2078]
[2079]
[2080]
Underfull \hbox (badness 1796) in paragraph at lines 4745--4750
[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/sl/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/sl/10 type =
=

[2081]
[2082]
Underfull \hbox (badness 1838) in paragraph at lines 4831--4837
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

Underfull \hbox (badness 10000) in paragraph at lines 4831--4837
\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file

[2083]
[2084]
[2085]
[2086]
Underfull \hbox (badness 2197) in paragraph at lines 5112--5122
[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/sl/10 available.packages[][][][]\T1/ptm/m/n/10 :

[2087]
Underfull \hbox (badness 1571) in paragraph at lines 5178--5182
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by

[2088]
[2089]
[2090]
[2091]) (./utils-pkg.tex
[2092]
Chapter 14.

[2093]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/sl/10 insertions[]\T1/ptm/m/n/10 ',

[2094]
[2095]
[2096]
[2097]
[2098]
[2099]
[2100]
[2101]
[2102]
[2103]
Underfull \hbox (badness 10000) in paragraph at lines 728--734
[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/sl/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/sl/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 728--734
[]\T1/zi4/m/sl/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10
 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the

[2104]
[2105]
[2106]
Underfull \hbox (badness 3861) in paragraph at lines 934--939
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/sl/10 
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,

[2107]
[2108]
[2109]
Underfull \hbox (badness 10000) in paragraph at lines 1139--1141
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing

[2110]
[2111]
[2112]
Underfull \vbox (badness 10000) has occurred while \output is active
[2113]
[2114]
[2115]
[2116]
[2117]
Underfull \hbox (badness 1371) in paragraph at lines 1666--1668
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to

[2118]
[2119]
[2120]
[2121]
[2122]
[2123]
[2124]
[2125]
[2126]
[2127]
[2128]
[2129]
Underfull \hbox (badness 2057) in paragraph at lines 2386--2388
[]\T1/ptm/m/n/10 None for []\T1/zi4/m/sl/10 chooseCRANmirror()[]\T1/ptm/m/n/10 
, this func-tion is in-voked for its side ef-fect of up-dat-ing

[2130]
Underfull \hbox (badness 2150) in paragraph at lines 2461--2468
[]\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/sl/10 citation() []\T1
/ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print

Underfull \hbox (badness 1400) in paragraph at lines 2461--2468
\T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I
f a pack-age has more

[2131]
[2132]
[2133]
Underfull \vbox (badness 3803) has occurred while \output is active
[2134]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2738 ... the Clipboard in MS Windows}{clipboard}
                                                  
[2135]
[2136]
[2137]
[2138]
[2139]
[2140]
[2141]
[2142]
[2143]
[2144]
[2145]
[2146]
[2147]
[2148]
[2149]
[2150]
[2151]
[2152]
[2153]
[2154]
[2155]
Underfull \hbox (badness 6842) in paragraph at lines 4048--4053
[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/sl/10 "libcurl" []\T1/ptm/m/n/1
0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use


[2156]
Underfull \hbox (badness 1430) in paragraph at lines 4111--4115
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the []\T1/zi4/m/sl/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the

[2157]
Underfull \hbox (badness 1184) in paragraph at lines 4182--4198
[]\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/sl/10 method = "libcurl"[]\T1/ptm
/m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS

Underfull \hbox (badness 1019) in paragraph at lines 4182--4198
\T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/sl/10 "Schannel"[]\T1/ptm/m/n/10 '. If
 it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari-

Underfull \hbox (badness 1668) in paragraph at lines 4182--4198
\T1/ptm/m/n/10 able []\T1/zi4/m/sl/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s
et to a path to a cer-tifi-cate bun-dle file, usu-ally named

[2158]
[2159]
Underfull \hbox (badness 10000) in paragraph at lines 4332--4334
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/sl/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and

[2160]
[2161]
[2162]
[2163]
[2164]
[2165]
[2166]
[2167]
[2168]
[2169]
[2170]
[2171]
[2172]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5111 ...mat Unordered and Ordered Lists}{format}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5111 ...mat Unordered and Ordered Lists}{format}
                                                  
[2173]
[2174]
[2175]
[2176]
[2177]
[2178]
[2179]
[2180]
Underfull \hbox (badness 1622) in paragraph at lines 5634--5638
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the

[2181]
[2182]
[2183]
[2184]
[2185]
[2186]
Underfull \hbox (badness 1448) in paragraph at lines 6019--6024
[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing

[2187]
[2188]
[2189]
[2190]
[2191]
[2192]
[2193]
[2194]
Underfull \hbox (badness 1371) in paragraph at lines 6567--6569
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to

[2195]
[2196]
Underfull \hbox (badness 1502) in paragraph at lines 6656--6662
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

Underfull \hbox (badness 2103) in paragraph at lines 6656--6662
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file

[2197]
[2198]
Underfull \hbox (badness 10000) in paragraph at lines 6833--6842
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,

Underfull \hbox (badness 3354) in paragraph at lines 6833--6842
\T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/sl/10 /html/packages.html\T1
/ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/sl/10 make.packages.html
[][][]()[]\T1/ptm/m/n/10 .

[2199]
Underfull \hbox (badness 2150) in paragraph at lines 6895--6898
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See

[2200]
[2201]
Underfull \hbox (badness 3118) in paragraph at lines 7034--7036
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for

[2202]
[2203]
[2204]
Underfull \hbox (badness 1325) in paragraph at lines 7213--7217
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/sl/10 available.pack
ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able

[2205]
Underfull \hbox (badness 1424) in paragraph at lines 7306--7309
[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to

[2206]
Underfull \hbox (badness 3219) in paragraph at lines 7378--7385
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/s
l/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-

Underfull \hbox (badness 5175) in paragraph at lines 7378--7385
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

Underfull \hbox (badness 1342) in paragraph at lines 7378--7385
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by

Underfull \hbox (badness 1596) in paragraph at lines 7378--7385
[][][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")[]
\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 type = "both" []\T1/ptm/m/n/10 will be silen
tly

Underfull \hbox (badness 2932) in paragraph at lines 7386--7389
[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/sl/10 type = "source" []\T1/p
tm/m/n/10 al-ways works pro-vided the pack-age con-tains no

[2207]
[2208]
Underfull \hbox (badness 1024) in paragraph at lines 7515--7518
[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/sl/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 , ] []\T1/
ptm/m/n/10 will

Underfull \hbox (badness 10000) in paragraph at lines 7548--7553
[][][]\T1/zi4/m/sl/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s
l/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,

[2209]
Underfull \hbox (badness 5133) in paragraph at lines 7607--7611
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each
 pack-age's

[2210]
[2211]
[2212]
[2213]
[2214]
[2215]
[2216]
[2217]
[2218]
[2219]
[2220]
Underfull \hbox (badness 10000) in paragraph at lines 8271--8273
[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/sl/10 methods(..)[]\T1/pt
m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class

[2221]
[2222]
[2223]
[2224]
[2225]
[2226]
[2227]
[2228] [2229]
[2230]
[2231]
[2232]
[2233]
Underfull \hbox (badness 2310) in paragraph at lines 9058--9063
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,

[2234]
[2235]
[2236]
[2237]
[2238]
[2239]
[2240]
[2241]
[2242]
Underfull \hbox (badness 1248) in paragraph at lines 9629--9633
[]\T1/zi4/m/sl/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the

[2243]
Underfull \hbox (badness 1789) in paragraph at lines 9707--9709
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the

[2244]
[2245]
[2246]
[2247]
Underfull \hbox (badness 2600) in paragraph at lines 9931--9934
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic;
 de-faults to

[2248]
[2249]
[2250]
[2251]
[2252]
[2253]
[2254]
[2255]
[2256]
Underfull \hbox (badness 1097) in paragraph at lines 10568--10571
[]\T1/ptm/m/n/10 The name []\T1/zi4/m/sl/10 "clipboard" []\T1/ptm/m/n/10 may al
so be used on Win-dows, in which case

[2257]
[2258]
Underfull \hbox (badness 3000) in paragraph at lines 10704--10709
[][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
sl/10 read.table[][][][]\T1/ptm/m/n/10 ;

[2259]
[2260]
[2261]
[2262]
[2263]
[2264]
[2265]
[2266]
[2267]
Underfull \hbox (badness 2134) in paragraph at lines 11299--11304
[][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
sl/10 write.table[][][][]\T1/ptm/m/n/10 ;

[2268]
Underfull \hbox (badness 10000) in paragraph at lines 11355--11360
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for


Underfull \hbox (badness 10000) in paragraph at lines 11355--11360
[]\T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 HKEY_C
LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/
10 ,

[2269]
[2270]
[2271]
[2272]
[2273]
[2274]
[2275]
[2276]
Underfull \hbox (badness 1824) in paragraph at lines 11853--11857
\T1/zi4/m/sl/10 / / en . wikipedia . org / w / index . php ? title = Roman _ nu
merals & oldid = 1188781837$[][]\T1/ptm/m/n/10 . Ac-cessed

[2277]
[2278]
[2279]
[2280]
[2281]
[2282]
[2283]
Underfull \hbox (badness 4060) in paragraph at lines 12299--12302
[]\T1/ptm/m/n/10 If `[]\T1/zi4/m/sl/10 --default-packages[]\T1/ptm/m/n/10 ' is 
not used, then []\T1/zi4/m/sl/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-
ment vari-able

Overfull \hbox (18.77168pt too wide) in paragraph at lines 12322--12322
 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 

[2284]
[2285]
[2286]
[2287]
Underfull \hbox (badness 2150) in paragraph at lines 12577--12579
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac
s / manual /

[2288]
[2289]
[2290]
[2291]
Underfull \hbox (badness 10000) in paragraph at lines 12797--12801
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/sl/10 stylepath []\T1/ptm/m/n/10 
is now taken from the en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 12830--12836
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a

[2292]
Underfull \hbox (badness 2762) in paragraph at lines 12845--12851
\T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin
ce 2018). Ei-ther set

[2293]
[2294]
Underfull \hbox (badness 1009) in paragraph at lines 13020--13032
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If

Underfull \hbox (badness 4779) in paragraph at lines 13060--13062
[]\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI ([]\T1/zi4/m/sl/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do
ws and

[2295]
Underfull \hbox (badness 1077) in paragraph at lines 13090--13097
\T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p
er-sonal' di-rec-tory, oth-er-wise to

[2296]
[2297]
[2298]
[2299]
[2300]
[2301]
Underfull \hbox (badness 3780) in paragraph at lines 13515--13521
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\
T1/zi4/m/sl/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via

[2302]
Underfull \hbox (badness 2635) in paragraph at lines 13533--13536
[]\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/sl/10 CRAN[]\T1/ptm/m/n/10 ' is treate
d spe-cially: the value is taken from the cur-rent set-ting of

[2303]
[2304]
[2305]
Underfull \hbox (badness 2302) in paragraph at lines 13743--13745
[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call

[2306]
[2307]
[2308]
[2309]
[2310]
Underfull \hbox (badness 4441) in paragraph at lines 14042--14047
[]\T1/ptm/m/n/10 logical; if []\T1/zi4/m/sl/10 TRUE []\T1/ptm/m/n/10 (de-fault)
, [][][]\T1/zi4/m/sl/10 deparse[][][](control = \T1/ptm/m/sl/10 control\T1/zi4/
m/sl/10 ) []\T1/ptm/m/n/10 will not have

Underfull \hbox (badness 5970) in paragraph at lines 14051--14054
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive

[2311]
[2312]
[2313]
[2314]
[2315]
[2316]
[2317]
Underfull \hbox (badness 2932) in paragraph at lines 14482--14489
[]\T1/ptm/m/n/10 If []\T1/zi4/m/sl/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa
ult) then the avail-able syn-tax ob-jects are con-sulted in turn,

Underfull \hbox (badness 1688) in paragraph at lines 14482--14489
\T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/sl/10 extension []\T1/ptm/m/n
/10 com-po-nent matches (as a reg-exp) the file name. Ob-

[2318]
[2319]
[2320]
[2321]
Underfull \hbox (badness 6510) in paragraph at lines 14794--14798
[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 is set 
to the com-mand []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men
t vari-able

[2322]
Underfull \hbox (badness 10000) in paragraph at lines 14801--14804
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / pubs . opengroup 
. org /

Underfull \hbox (badness 2245) in paragraph at lines 14801--14804
\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX

[2323]
[2324]
[2325]
[2326]
[2327]
[2328]
[2329]
[2330]
[2331]
[2332]
Underfull \hbox (badness 10000) in paragraph at lines 15474--15479
[]\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/sl/10 destdir []\T1/ptm/m/n/10 a
nd []\T1/zi4/m/sl/10 dependencies []\T1/ptm/m/n/10 to be passed to

Underfull \hbox (badness 3861) in paragraph at lines 15474--15479
[][][]\T1/zi4/m/sl/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 max_repo_cache_age [
]\T1/ptm/m/n/10 and

Underfull \hbox (badness 1052) in paragraph at lines 15480--15482
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See

Underfull \hbox (badness 10000) in paragraph at lines 15539--15542
[][][]\T1/zi4/m/sl/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/
sl/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download
.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][
][]\T1/ptm/m/n/10 ,

[2333]
[2334]
[2335]
[2336]
[2337]
[2338]
[2339]
[2340]
[2341]
[2342]
[2343]
[2344]
[2345]
[2346]
[2347]
[2348])
No file fullrefman.ind.
(./fullrefman.aux)

LaTeX Font Warning: Some font shapes were not available, defaults substituted.


Package rerunfilecheck Warning: File `fullrefman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.

 )
(see the transcript file for additional information)
pdfTeX warning (dest): name{Rfn.write.matrix} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.knitr} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.restore} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.setup} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.ncols} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.mathjaxr} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do
es not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lmrob} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rlm} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.nlsList} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no
t exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rBind} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cBind} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no
t exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.roundX} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.base.Rdash.deprecated} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, 
replaced by a fixed one

 </tmp/texfonts/pk/ljfour/jknappen/ec/tctt1000.600pk> </tmp/texfonts/pk/ljfour/
jknappen/ec/tctt0900.600pk></usr/share/texlive/texmf-dist/fonts/type1/public/in
consolata/Inconsolata-zi4b.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/inconsolata/Inconsolata-zi4r.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cmextra/cmbsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmib10.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw
/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8
a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi8a.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/tex
mf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/urw/times/utmri8a.pfb>
Output written on fullrefman.pdf (2349 pages, 5941982 bytes).
Transcript written on fullrefman.log.
This is makeindex, version 2.17 [TeX Live 2025/dev] (kpathsea + Thai support).
Scanning input file fullrefman.idx...................done (15186 entries accepted, 39 rejected).
Sorting entries....................................................................................................................................................................done (240185 comparisons).
Generating output file fullrefman.ind..................done (15174 lines written, 51 warnings).
Output written in fullrefman.ind.
Transcript written in fullrefman.ilg.
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./fullrefman.tex
LaTeX2e <2024-11-01> patch level 2
L3 programming layer <2025-01-18>
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2024/06/29 v1.4n Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty)
(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/mathrsfs.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty
`inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex)))))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty
(/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
(/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(/usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
(/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))
(/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
(/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))))
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
Writing index file fullrefman.idx
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
(./fullrefman.aux)
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(./fullrefman.out) (./fullrefman.out)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf-
dist/fonts/enc/dvips/base/8r.enc}] (./fullrefman.toc
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/ursfs.fd)
[1{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc}]
[2]
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[10]
[11]
[12]
[13]
[14]
[15]
[16]
[17]
[18]
[19]
[20]
[21]
[22]
[23]
[24]
[25]
[26]
[27]
[28]
[29]
[30])
[31]
[32] (./base-pkg.tex
Chapter 1.

[1]
[2]
Underfull \hbox (badness 6252) in paragraph at lines 149--157
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [
]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It

Underfull \hbox (badness 10000) in paragraph at lines 149--157
\T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T
1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base

Underfull \hbox (badness 10000) in paragraph at lines 149--157
[]\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base

Underfull \hbox (badness 10000) in paragraph at lines 149--157
\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z
i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As

Underfull \hbox (badness 4995) in paragraph at lines 149--157
[]\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by []
\T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 ,

[3]
[4]
[5]
Underfull \hbox (badness 1178) in paragraph at lines 337--340
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/
n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues

[6]
[7]
[8]
[9]
Underfull \hbox (badness 2556) in paragraph at lines 572--578
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ',

[10]
[11]
[12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[13{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}]
[14]
[15]
[16]
[17]
[18]
[19]
[20]
[21]
[22]
[23]
[24]
[25]
[26]
[27]
[28]
[29]
[30]
Underfull \vbox (badness 3803) has occurred while \output is active
[31]
[32]
[33]
[34]
[35]
[36]
Overfull \hbox (26.27782pt too wide) in paragraph at lines 2261--2261
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 

[37]
[38]
[39]
[40]
[41]
[42]
[43]
[44]
[45]
[46]
Underfull \hbox (badness 1721) in paragraph at lines 2926--2930
[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p
tm/m/n/10 ; fur-ther,

[47]
[48]
[49]
[50]
[51]
[52]
[53]
Underfull \hbox (badness 2538) in paragraph at lines 3404--3407
[]\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[]
[][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE,

[54]
[55]
[56]
[57]
[58]
[59]
[60]
[61]
[62]
[63]
[64]
[65]
[66]
Underfull \hbox (badness 10000) in paragraph at lines 4200--4202
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting

[67]
[68]
[69]
[70]
[71]
[72]
[73]
[74]
[75]
[76]
[77]
[78]
[79]
[80]
[81]
[82]
[83]
[84]
[85]
[86]
[87]
Underfull \hbox (badness 2521) in paragraph at lines 5551--5553
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by

[88]
[89]
[90]
[91]
[92]
[93]
[94]
[95]
[96]
[97]
[98]
[99]
[100]
[101]
[102]
[103]
[104]
[105]
[106]
[107]
Overfull \hbox (5.27168pt too wide) in paragraph at lines 6834--6834
 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 

[108]
[109]
[110]
[111]
[112]
[113]
[114]
[115]
[116]
[117]
[118]
[119]
Underfull \hbox (badness 1303) in paragraph at lines 7730--7737
[]\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n
/10 only. This reads the

[120]
Underfull \hbox (badness 2261) in paragraph at lines 7741--7746
\T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1
/zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen
et . net / ~conrad / software /

[121]
[122]
Underfull \vbox (badness 10000) has occurred while \output is active
[123]
[124]
[125]
[126]
[127]
[128]
[129]
[130]
[131]
Underfull \hbox (badness 2096) in paragraph at lines 8474--8478
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .

[132]
[133]
Underfull \hbox (badness 2351) in paragraph at lines 8589--8592
[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,

[134]
[135]
[136]
[137]
[138]
Underfull \hbox (badness 4479) in paragraph at lines 8906--8917
[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),

[139]
[140]
[141]
[142]
[143]
[144]
Underfull \hbox (badness 1629) in paragraph at lines 9334--9346
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

Underfull \hbox (badness 2875) in paragraph at lines 9334--9346
[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31

[145]
[146]
[147]
[148]
[149]
[150]
[151]
[152]
[153]
[154]
[155]
[156]
[157]
Underfull \hbox (badness 1178) in paragraph at lines 10200--10204
[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
 atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names 
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-

[158]
[159]
[160]
[161]
[162]
[163]
[164]
[165]
[166]
[167]
[168]
[169]
[170]
[171]
[172]
[173]
[174]
[175]
[176]
[177]
[178]
[179]
[180]
[181]
[182]
[183]
[184]
[185]
[186]
[187]
[188]
[189]
[190]
[191]
[192]
[193]
Underfull \hbox (badness 2744) in paragraph at lines 12540--12542
[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see

[194]
[195]
[196]
[197]
[198]
[199]
[200]
[201]
Underfull \vbox (badness 10000) has occurred while \output is active
[202]
[203]
[204]
[205]
[206]
[207]
[208]
[209]
[210]
[211]
[212]
[213]
[214]
[215]
[216]
[217]
[218]
[219]
[220]
[221]
[222]
[223]
[224]
[225]
[226]
Underfull \hbox (badness 2253) in paragraph at lines 14746--14748
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see

Underfull \hbox (badness 1490) in paragraph at lines 14781--14784
[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the

[227]
Underfull \hbox (badness 1565) in paragraph at lines 14863--14867
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and

[228]
Underfull \hbox (badness 4927) in paragraph at lines 14914--14916
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/zi4/m/n/10 fsep =

[229]
[230]
[231]
Underfull \hbox (badness 1466) in paragraph at lines 15065--15068
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and

[232]
Underfull \hbox (badness 10000) in paragraph at lines 15196--15200
[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 15207--15210
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /

[233]
[234]
[235]
[236]
[237]
Underfull \hbox (badness 3965) in paragraph at lines 15504--15508
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,

[238]
[239]
[240]
[241]
[242]
[243]
[244]
[245]
Underfull \hbox (badness 5260) in paragraph at lines 16006--16006
[]\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/
ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma
ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 ,

[246]
[247]
[248]
[249]
Underfull \hbox (badness 4429) in paragraph at lines 16296--16299
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for

[250]
[251]
Underfull \hbox (badness 10000) in paragraph at lines 16403--16405
[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/zi4/m/n/10 .format.zeros(*,

[252]
Underfull \hbox (badness 2035) in paragraph at lines 16476--16480
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 
R \T1/ptm/m/n/10 3.2.0: for use within

[253]
Underfull \vbox (badness 10000) has occurred while \output is active
[254]
[255]
[256]
[257]
[258]
[259]
[260]
[261]
[262]
Underfull \hbox (badness 2452) in paragraph at lines 17099--17103
[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 17099--17103
\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and

[263]
[264]
[265]
Underfull \hbox (badness 1092) in paragraph at lines 17273--17278
[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing

[266]
[267]
[268]
Underfull \hbox (badness 6741) in paragraph at lines 17526--17530
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,

[269]
[270]
[271]
[272]
[273]
[274]
[275]
[276]
[277]
[278]
[279]
Underfull \vbox (badness 3803) has occurred while \output is active
[280]
Underfull \vbox (badness 10000) has occurred while \output is active
[281]
[282]
[283]
[284]
[285]
[286]
[287]
[288]
[289]
[290]
Underfull \hbox (badness 1769) in paragraph at lines 18999--19002
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor

[291]
[292]
[293]
[294]
[295]
Underfull \hbox (badness 10000) in paragraph at lines 19308--19310
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /

Underfull \hbox (badness 2088) in paragraph at lines 19314--19323
[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /

[296]
[297]
[298]
[299]
[300]
[301]
[302]
[303]
[304]
[305]
Underfull \hbox (badness 1442) in paragraph at lines 19922--19924
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see

[306]
Underfull \hbox (badness 2452) in paragraph at lines 20018--20044
[][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 
as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt
m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 5726) in paragraph at lines 20018--20044
[][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en
vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma
trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][]

[307]
[308]
[309]
[310]
[311]
[312]
Underfull \hbox (badness 1248) in paragraph at lines 20416--20419
[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,

[313]
[314]
[315]
[316]
[317]
Underfull \hbox (badness 4739) in paragraph at lines 20683--20685
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see

[318]
[319]
[320]
[321]
[322]
Underfull \vbox (badness 10000) has occurred while \output is active
[323]
[324]
[325]
[326]
[327]
[328]
[329]
[330]
[331]
[332]
[333]
[334]
[335]
[336]
Underfull \hbox (badness 2469) in paragraph at lines 21851--21856
[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and

[337]
Underfull \hbox (badness 1675) in paragraph at lines 21938--21947
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3189) in paragraph at lines 21948--21961
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
 or empty, the

[338]
Underfull \hbox (badness 10000) in paragraph at lines 21996--21999
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-

Underfull \hbox (badness 4752) in paragraph at lines 21996--21999
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may 
be opened by

[339]
[340]
Underfull \hbox (badness 1014) in paragraph at lines 22130--22135
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if

[341]
[342]
[343]
[344]
[345]
[346]
[347]
[348]
[349]
[350]
[351]
[352]
[353]
Underfull \hbox (badness 1264) in paragraph at lines 22977--22985
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:

Underfull \hbox (badness 4441) in paragraph at lines 23012--23015
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,

[354]
[355]
[356]
[357]
[358]
[359]
[360]
[361]
[362]
[363]
[364]
[365]
[366]
Underfull \hbox (badness 5231) in paragraph at lines 23830--23832
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==

[367]
[368]
[369]
[370]
[371]
[372]
[373]
[374]
[375]
[376]
[377]
[378]
[379]
[380]
[381]
[382]
[383]
Underfull \hbox (badness 6380) in paragraph at lines 24940--24946
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress
ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-

Underfull \hbox (badness 1472) in paragraph at lines 24940--24946
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ 
_ Utils$[][]

[384]
[385]
[386]
[387]
[388]
[389]
[390]
[391]
[392]
Underfull \hbox (badness 2790) in paragraph at lines 25453--25456
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 25453--25456
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by

[393]
[394]
[395]
[396]
[397]
Underfull \hbox (badness 1194) in paragraph at lines 25781--25784
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls

[398]
[399]
[400]
Underfull \hbox (badness 2368) in paragraph at lines 25988--25994
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,

[401]
[402]
[403]
[404]
[405]
[406]
Underfull \hbox (badness 10000) in paragraph at lines 26378--26381
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by

[407]
[408]
[409]
[410]
[411]
[412]
[413]
[414]
[415]
[416]
Underfull \hbox (badness 10000) in paragraph at lines 27006--27008
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%

[417]
[418]
[419]
[420]
[421]
[422]
[423]
Underfull \hbox (badness 2443) in paragraph at lines 27497--27505
\T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob
-jects. For

[424]
[425]
[426]
[427]
[428]
[429]
[430]
Underfull \hbox (badness 1881) in paragraph at lines 27927--27930
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 27952--27954
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see


[431]
[432]
Underfull \hbox (badness 2142) in paragraph at lines 28093--28097
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 28150--28155
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

[433]
[434]
[435]
[436]
Underfull \hbox (badness 10000) in paragraph at lines 28446--28452
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 28446--28452
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 28446--28452
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 5878) in paragraph at lines 28459--28462
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p
tm/m/n/10 and

Underfull \hbox (badness 2689) in paragraph at lines 28485--28487
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 28531--28536
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly

[437]
Underfull \hbox (badness 2529) in paragraph at lines 28537--28548
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 28537--28548
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and

Underfull \hbox (badness 7203) in paragraph at lines 28549--28552
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and

[438]
[439]
[440]
[441]
[442]
Underfull \vbox (badness 10000) has occurred while \output is active
[443]
Underfull \hbox (badness 10000) in paragraph at lines 28967--28971
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],

[444]
[445]
Underfull \hbox (badness 10000) in paragraph at lines 29114--29117
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,

[446]
Underfull \hbox (badness 7925) in paragraph at lines 29195--29199
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to

Underfull \hbox (badness 1253) in paragraph at lines 29195--29199
[][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 ,
 which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) 
and [][][]\T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 2521) in paragraph at lines 29200--29209
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s,

[447]
[448]
[449]
[450]
[451]
[452]
[453]
[454]
[455]
[456]
[457]
[458]
[459]
[460]
[461]
[462]
Underfull \hbox (badness 2726) in paragraph at lines 30214--30217
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see

[463]
[464]
[465]
[466]
[467]
[468]
[469]
[470]
[471]
[472]
[473]
[474]
[475]
[476]
[477]
[478]
[479]
[480]
[481]
Underfull \vbox (badness 3803) has occurred while \output is active
[482]
[483]
[484]
[485]
[486]
[487]
[488]
[489]
[490]
Underfull \hbox (badness 1533) in paragraph at lines 32024--32027
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the

[491]
[492]
[493]
Underfull \hbox (badness 1163) in paragraph at lines 32195--32206
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in

[494]
[495]
[496]
[497]
[498]
[499]
[500]
Underfull \vbox (badness 3803) has occurred while \output is active
[501]
[502]
Underfull \hbox (badness 6300) in paragraph at lines 32741--32743
[]\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr
it-ing R Ex-ten-sions' man-ual:

[503]
[504]
[505]
[506]
[507]
[508]
[509]
[510]
[511]
[512]
[513]
[514]
[515]
[516]
[517]
[518]
[519]
Underfull \hbox (badness 10000) in paragraph at lines 33864--33868
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 33864--33868
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions 
of the matches are also re-turned by name.

Underfull \hbox (badness 3557) in paragraph at lines 33885--33887
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /

Underfull \hbox (badness 1122) in paragraph at lines 33888--33892
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /

[520]
[521]
Underfull \vbox (badness 10000) has occurred while \output is active
[522]
[523]
[524]
[525]
[526]
[527]
[528]
[529]
Underfull \hbox (badness 1655) in paragraph at lines 34490--34492
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for

[530]
[531]
[532]
[533]
[534]
[535]
[536]
[537]
[538]
[539]
[540]
[541]
[542]
[543]
[544]
[545]
[546]
[547]
[548]
Underfull \hbox (badness 2261) in paragraph at lines 35693--35698
[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if

[549]
[550]
[551]
[552]
[553]
[554]
[555]
[556]
[557]
[558]
[559]
[560]
[561]
[562]
[563]
[564]
Underfull \hbox (badness 3668) in paragraph at lines 36728--36732
[]\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in-
te-ger con-nec-tion de-scrip-tors for use with

[565]
Underfull \hbox (badness 10000) in paragraph at lines 36819--36830
\T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par
sing-[]c-[]command-[]line-[]arguments ?

[566]
[567]
[568]
[569]
[570]
[571]
[572]
[573]
[574]
[575]
[576]
[577]
[578]
[579]
[580]
[581]
[582]
[583]
[584]
[585]
[586]
[587]
[588]
[589]
[590]
Underfull \hbox (badness 10000) in paragraph at lines 38451--38453
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for

[591]
[592]
[593]
[594]
[595]
[596]
[597]
Underfull \hbox (badness 2913) in paragraph at lines 38869--38873
\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by

[598]
[599]
[600]
Underfull \hbox (badness 1072) in paragraph at lines 39115--39119
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

[601]
Underfull \hbox (badness 10000) in paragraph at lines 39120--39124
[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 39160--39166
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 39160--39166
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 39160--39166
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3009) in paragraph at lines 39175--39182
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

Underfull \hbox (badness 1038) in paragraph at lines 39175--39182
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 39175--39182
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 39175--39182
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from

[602]
[603]
[604]
[605]
Underfull \hbox (badness 2644) in paragraph at lines 39410--39414
[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an


[606]
[607]
[608]
Underfull \hbox (badness 1389) in paragraph at lines 39573--39580
[]\T1/ptm/m/n/10 a char-ac-ter string. The de-fault for the []\T1/zi4/m/n/10 fo
rmat []\T1/ptm/m/n/10 meth-ods is []\T1/zi4/m/n/10 "%Y-%m-%d

[609]
[610]
[611]
[612]
[613]
[614]
[615]
[616]
[617]
[618]
[619]
[620]
[621]
[622]
[623]
[624]
[625]
[626]
[627]
[628]
[629]
Underfull \hbox (badness 1158) in paragraph at lines 40939--40941
[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault

[630]
[631]
[632]
[633]
[634]
[635] [636]
[637]
[638]
[639]
Underfull \hbox (badness 1137) in paragraph at lines 41539--41545
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails

Underfull \hbox (badness 4967) in paragraph at lines 41557--41562
[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple

[640]
[641]
Underfull \hbox (badness 1616) in paragraph at lines 41677--41682
[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions

[642]
[643]
[644]
[645]
Underfull \vbox (badness 3803) has occurred while \output is active
[646]
[647]
[648]
[649]
[650]
Underfull \hbox (badness 1472) in paragraph at lines 42224--42227
[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see

[651]
[652]
[653]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 42436.


[654]
[655]
[656]
[657]
[658]
[659]
[660]
[661]
[662]
[663]
[664]
[665]
Underfull \hbox (badness 10000) in paragraph at lines 43175--43179
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca
n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4
/m/sl/10 length(bin) >

[666]
[667]
[668]
[669]
[670]
Underfull \hbox (badness 10000) in paragraph at lines 43534--43537
[][][]\T1/zi4/m/sl/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] 
[][]$https : / / developer . r-[]project . org /

[671]
[672]
[673]
Underfull \hbox (badness 10000) in paragraph at lines 43718--43722
[][][]\T1/zi4/m/sl/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s
l/10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 taskCallb
ackManager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/sl/10 https : / / developer .


[674]
[675]
[676]
[677]
[678]
[679]
[680]
[681]
[682]
[683]
Underfull \hbox (badness 10000) in paragraph at lines 44366--44369
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[]
[] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time
-[]zones /

[684]
[685]
[686]
[687]
[688]
[689]
Underfull \vbox (badness 10000) has occurred while \output is active
[690]
[691]
[692]
[693]
[694]
[695]
[696]
[697]
Underfull \hbox (badness 1990) in paragraph at lines 45282--45290
[]\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an
y er-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 45282--45290
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less

[698]
[699]
[700]
[701]
[702]
[703]
[704]
[705]
[706]
[707]
[708]
[709]
[710]
[711]
[712]
[713]
[714]
[715]
[716]
[717]
[718]
[719]
Underfull \hbox (badness 1014) in paragraph at lines 46719--46722
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me
-di-ately, even if

[720]
[721]
Underfull \hbox (badness 2401) in paragraph at lines 46852--46856
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][]("
warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a

[722]
[723]
Underfull \hbox (badness 3492) in paragraph at lines 46978--46980
[]\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/
ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e.,

[724]
[725]
Underfull \hbox (badness 2111) in paragraph at lines 47064--47069
\T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10
 is not empty, these are used as col-umn names.

[726]
[727]
[728]
Underfull \hbox (badness 4001) in paragraph at lines 47312--47314
[]\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard 
eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/sl/10 https : / / developer 
.

[729]
[730]
[731]
[732]
[733]
[734]
[735]
Underfull \hbox (badness 5417) in paragraph at lines 47713--47717
[]\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re
ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas

[736]
Underfull \hbox (badness 10000) in paragraph at lines 47774--47778
[]\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d
ard' reg-exps, in-clud-ing el-e-ments named

[737]) (./compiler-pkg.tex
[738]
Chapter 2.

[739]
[740]
[741]
[742]) (./datasets-pkg.tex
Chapter 3.

[743]
[744]
[745]
[746]
[747] [748]
[749]
[750]
[751]
[752]
[753]
[754]
[755]
[756]
[757]
[758]
[759]
Underfull \hbox (badness 1097) in paragraph at lines 1034--1038
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.

[760]
[761]
[762]
[763]
[764]
[765]
[766]
[767]
[768]
[769]
[770]
[771] [772]
[773]
[774]
[775]
[776]
[777] [778]
[779]
[780]
[781]
[782] [783]
[784]
[785]
[786]
[787]
[788]
[789]
[790]
[791]
[792]
[793]
[794]
[795]
[796]
[797]
[798]
[799]
[800]
[801]
Overfull \hbox (2.27475pt too wide) in paragraph at lines 3524--3524
 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis
t.html#Geographic%20Centers[] 

[802]
[803]
[804]
[805]
[806]
[807]
[808]
[809]
[810]
[811]
[812]
[813]
[814]
[815]
[816]
[817]
[818]
[819]
[820]
[821]
[822]
[823]
[824]
[825]) (./grDevices-pkg.tex
[826]
Chapter 4.

[827]
[828]
[829]
[830]
[831]
Underfull \hbox (badness 2221) in paragraph at lines 282--286
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[]
\T1/ptm/m/n/10 , with iden-ti-cal mean-ing to

Underfull \hbox (badness 10000) in paragraph at lines 297--302
[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/sl/10 axisTicks[][][]() []\T1
/ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1
/ptm/m/n/10 in

[832]
[833]
[834]
[835]
[836]
[837]
[838]
[839]
[840]
Underfull \hbox (badness 1424) in paragraph at lines 901--903
[][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a
nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b
e spec-i-fied as

[841]
[842]
[843]
[844]
[845]
[846]
Underfull \hbox (badness 5175) in paragraph at lines 1229--1231
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in

[847]
[848]
Underfull \hbox (badness 2512) in paragraph at lines 1348--1350
[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar
chive . org / web / 20190613001950 / http : / / efg2 . com /

[849]
[850]
[851]
[852]
[853]
Underfull \hbox (badness 1490) in paragraph at lines 1648--1653
\T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and 
[][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []
\T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10
 and

Underfull \hbox (badness 3302) in paragraph at lines 1661--1665
[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of

[854]
[855]
[856]
[857]
[858]
[859]
Underfull \hbox (badness 1325) in paragraph at lines 2076--2086
[]\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png
alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/
m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm
/m/n/10 ,

[860]
[861]
Underfull \hbox (badness 10000) in paragraph at lines 2188--2190
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of

[862]
[863]
[864]
Underfull \hbox (badness 6758) in paragraph at lines 2376--2379
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are

[865]
[866]
[867]
[868]
[869]
[870]
[871]
[872]
[873]
[874]
[875]
[876]
Underfull \hbox (badness 10000) in paragraph at lines 3132--3133


[877]
[878]
[879]
[880]
[881]
[882]
[883]
[884]
[885]
[886]
[887]
[888]
Underfull \vbox (badness 3803) has occurred while \output is active
[889]
[890]
[891]
[892]
Underfull \vbox (badness 10000) has occurred while \output is active
[893]
[894]
[895]
[896]
Underfull \hbox (badness 1418) in paragraph at lines 4410--4417
\T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H
elvetica-Narrow"[]\T1/ptm/m/n/10 ,

[897]
[898]
[899]
[900]
[901]
[902]
[903]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.4875 \aliasA{symbol}{plotmath}{symbol}
                                         [904] [905]
[906]
[907]
Underfull \vbox (badness 3803) has occurred while \output is active
[908]
[909]
Underfull \hbox (badness 1584) in paragraph at lines 5268--5270
[]\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1
/zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See

Underfull \hbox (badness 1067) in paragraph at lines 5272--5279
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-

[910]
[911]
[912]
[913]
Underfull \hbox (badness 1377) in paragraph at lines 5574--5579
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues

[914]
[915]
Underfull \hbox (badness 1377) in paragraph at lines 5678--5683
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and

[916]
Underfull \hbox (badness 7344) in paragraph at lines 5747--5749
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso

[917]
[918]
Underfull \hbox (badness 2035) in paragraph at lines 5886--5895
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 5886--5895
\T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti
ca-Narrow"[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 5886--5895
[]\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P
alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1
/zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/
ptm/m/n/10 ,

[919]
Underfull \hbox (badness 10000) in paragraph at lines 5953--5958
[]\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/
zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu /

[920]
[921]
[922]
Underfull \hbox (badness 1546) in paragraph at lines 6093--6101
[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n
/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 ,

[923]
[924]
[925]
[926]
[927]
[928]
Underfull \hbox (badness 6625) in paragraph at lines 6537--6540
[]\T1/ptm/m/n/10 Murrell, P., Ooms, J., Al-laire, J.J. (2015), "Record-ing and 
Re-play-ing the Graph-

[929]
[930]
Underfull \hbox (badness 10000) in paragraph at lines 6641--6644
[]\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (
red/green/blue) into HSV space

[931]
[932]
[933]
[934]
Overfull \hbox (9.73488pt too wide) in paragraph at lines 6878--6878
 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro
blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/
zi4/m/n/9 ):[] 

[935]
[936]
[937]
[938]
[939]
[940]
[941]
[942]
[943]
[944]
Underfull \hbox (badness 1189) in paragraph at lines 7507--7509
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of

[945]
Underfull \hbox (badness 10000) in paragraph at lines 7612--7614
[]\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C
JK lan-guages and

[946]
[947]
[948]
[949]
[950]
Underfull \hbox (badness 3780) in paragraph at lines 7927--7933
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/s
l/10 "AvantGarde"[]\T1/ptm/m/n/10 ,

[951]
[952]
[953]
[954]
[955]
[956]) (./graphics-pkg.tex
Chapter 5.

[957]
[958]
[959]
[960]
[961]
[962]
[963]
[964]
[965]
[966]
[967]
Underfull \vbox (badness 3803) has occurred while \output is active
[968]
[969]
[970]
[971]
[972]
[973]
Overfull \hbox (12.71341pt too wide) in paragraph at lines 1037--1037
 []        \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 

[974]
[975]
[976]
[977]
[978]
[979]
Underfull \hbox (badness 4634) in paragraph at lines 1410--1413
[][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor
ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1
/ptm/m/n/10 ,

[980]
[981]
[982]
[983]
[984]
[985]
[986]
[987]
[988]
[989]
[990]
[991]
[992]
[993]
[994]
[995]
[996]
Underfull \hbox (badness 1728) in paragraph at lines 2388--2390
[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10
 "n" []\T1/ptm/m/n/10 to sup-press and see also

[997]
Underfull \hbox (badness 1009) in paragraph at lines 2481--2488
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to

[998]
[999]
[1000]
[1001]
[1002]
[1003]
[1004]
[1005]
[1006]
[1007]
[1008]
[1009]
[1010]
[1011]
[1012]
[1013]
[1014]
[1015]
[1016]
[1017]
[1018]
[1019]
[1020]
Underfull \vbox (badness 10000) has occurred while \output is active
[1021]
Underfull \vbox (badness 10000) has occurred while \output is active
[1022]
[1023]
[1024]
[1025]
[1026]
[1027]
Underfull \vbox (badness 3803) has occurred while \output is active
[1028]
[1029]
[1030]
[1031]
[1032]
[1033]
[1034]
Underfull \hbox (badness 3229) in paragraph at lines 4733--4738
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see

[1035]
[1036]
[1037]
[1038]
[1039]
Underfull \hbox (badness 1107) in paragraph at lines 5233--5239
[]\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc
aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c
h),

[1040]
[1041]
Underfull \hbox (badness 10000) in paragraph at lines 5362--5365


[1042 </build/reproducible-path/r-base-4.4.3/library/graphics/help/figures/mai.
pdf>]
Underfull \hbox (badness 10000) in paragraph at lines 5423--5425


[1043 </build/reproducible-path/r-base-4.4.3/library/graphics/help/figures/oma.
pdf>]
[1044]
[1045]
[1046]
[1047]
[1048]
[1049]
[1050]
[1051]
[1052]
[1053]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6097 \aliasA{plot}{plot.default}{plot}
                                        
[1054]
[1055]
[1056]
[1057]
[1058]
[1059]
[1060]
[1061]
[1062]
[1063]
[1064]
[1065]
[1066]
[1067]
Overfull \hbox (31.57222pt too wide) in paragraph at lines 6997--6998
[][] 

[1068 </build/reproducible-path/r-base-4.4.3/library/graphics/help/figures/pch.
pdf>]
[1069]
Underfull \vbox (badness 3803) has occurred while \output is active
[1070]
[1071]
[1072]
[1073]
[1074]
[1075]
[1076]
[1077]
[1078]
[1079]
[1080]
[1081]
[1082]
[1083]
[1084]
[1085]
[1086]
[1087]
[1088]
[1089]
[1090]
[1091]
[1092]
[1093]
[1094]
[1095]
[1096]
[1097]
[1098]
[1099]
[1100]
[1101]
[1102]
Underfull \hbox (badness 4954) in paragraph at lines 9109--9111
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/sl/10 par(c("font.sub",

Underfull \hbox (badness 1019) in paragraph at lines 9111--9113
[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa
r(c("font.lab", "cex.lab",

[1103]
[1104]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9191 \HeaderA{units}{Graphical Units}{units}
                                              
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9191 \HeaderA{units}{Graphical Units}{units}
                                              
[1105]
[1106]
[1107]
[1108]) (./grid-pkg.tex
Chapter 6.

[1109]
[1110]
[1111]
[1112]
[1113]
[1114]
[1115]
[1116]
[1117]
Underfull \hbox (badness 2680) in paragraph at lines 551--554
[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an
d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal
-cu-la-tion of

[1118]
[1119]
[1120]
[1121]
[1122] [1123]
[1124]
[1125]
[1126]
[1127]
[1128]
Underfull \hbox (badness 4279) in paragraph at lines 1188--1197
[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/
ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T
1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi
ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 ,

[1129]
[1130]
[1131]
[1132]
[1133]
[1134]
[1135]
[1136]
[1137]
[1138]
[1139]
[1140]
[1141]
[1142]
[1143]
[1144]
[1145]
[1146]
[1147]
[1148]
[1149]
[1150]
[1151]
[1152]
[1153]
[1154]
[1155]
[1156]
[1157]
[1158]
[1159]
[1160]
Underfull \hbox (badness 10000) in paragraph at lines 3103--3105
[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see

[1161]
[1162]
[1163]
[1164]
[1165]
[1166]
[1167]
[1168]
[1169]
[1170]
[1171]
[1172]
[1173]
[1174]
[1175]
[1176]
Underfull \vbox (badness 10000) has occurred while \output is active
[1177]
[1178]
[1179]
[1180]
[1181]
[1182]
[1183]
[1184]
[1185]
[1186]
[1187]
[1188]
[1189]
[1190]
Underfull \hbox (badness 1067) in paragraph at lines 4842--4845
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only

[1191]
[1192]
[1193]
[1194]
[1195]
[1196]
Underfull \hbox (badness 7256) in paragraph at lines 5193--5195
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by

[1197]
[1198]
[1199]
[1200]
[1201]
[1202]
[1203]
Underfull \hbox (badness 2142) in paragraph at lines 5647--5651
[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/
10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or

[1204]
[1205]
Underfull \hbox (badness 4699) in paragraph at lines 5729--5734
[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o
b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 
and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a

[1206]
[1207]
[1208]
[1209]
[1210]
[1211]
[1212]
[1213]
[1214]
[1215]
[1216]
[1217]
[1218]
[1219]
[1220]
[1221]
[1222]
[1223]
[1224]
[1225]
[1226]
[1227]
[1228]
[1229]
[1230]
[1231]
[1232]
[1233]
[1234]
[1235]
[1236]
[1237]) (./methods-pkg.tex
[1238]
Chapter 7.

[1239]
[1240]
[1241]
[1242]
[1243]
[1244]
[1245]
[1246]
Underfull \vbox (badness 10000) has occurred while \output is active
[1247]
Underfull \vbox (badness 10000) has occurred while \output is active
[1248]
[1249]
[1250]
[1251]
[1252]
[1253]
[1254]
[1255]
[1256]
[1257]
Underfull \hbox (badness 2237) in paragraph at lines 1384--1386
[]\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te
nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s
l/10 "package"[]\T1/ptm/m/n/10 , also of class

[1258]
[1259]
[1260]
[1261]
[1262]
[1263]
[1264]
[1265]
[1266]
Underfull \hbox (badness 10000) in paragraph at lines 1980--1985
[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n
/10 can be an ob-ject of class

Underfull \hbox (badness 1038) in paragraph at lines 1980--1985
\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/
m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the

[1267]
[1268]
[1269]
Underfull \hbox (badness 2213) in paragraph at lines 2212--2217
[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/sl/10 where =

[1270]
[1271]
[1272]
[1273]
[1274]
Underfull \hbox (badness 10000) in paragraph at lines 2572--2575
[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] []
\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10
 cre-ate ob-jects of class

[1275]
[1276]
Underfull \hbox (badness 1132) in paragraph at lines 2712--2716
[]\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi
4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10
 slot of the re-turned re-sult is in

[1277]
Underfull \hbox (badness 1033) in paragraph at lines 2748--2753
\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 
re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1
0 re-stores the

[1278]
[1279]
[1280]
[1281]
[1282]
[1283]
[1284]
Underfull \hbox (badness 1102) in paragraph at lines 3305--3307
[]\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string
 name of the pack-age (with-out the ex-tra-ne-ous

[1285]
[1286]
[1287]
[1288]
[1289]
Underfull \hbox (badness 10000) in paragraph at lines 3642--3651
[]\T1/ptm/m/n/10 The

[1290]
[1291]
Underfull \hbox (badness 10000) in paragraph at lines 3762--3763
[] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi
tude = "numeric",

[1292]
Underfull \hbox (badness 10000) in paragraph at lines 3846--3847
[]\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character"
), contains =

[1293]
[1294]
[1295]
[1296]
[1297]
[1298]
[1299]
[1300]
[1301]
[1302]
Underfull \hbox (badness 1769) in paragraph at lines 4477--4483
[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10
 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar


Underfull \hbox (badness 1939) in paragraph at lines 4477--4483
[]\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [
][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u
sed by

[1303]
[1304]
[1305]
[1306]
[1307]
[1308]
[1309]
[1310]
[1311]
[1312]
Underfull \vbox (badness 10000) has occurred while \output is active
[1313]
[1314]
[1315]
Underfull \hbox (badness 4036) in paragraph at lines 5442--5445
[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m
/n/10 the method to use in re-sponse to a

[1316]
[1317]
Underfull \hbox (badness 3803) in paragraph at lines 5517--5519
[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to

[1318]
[1319]
[1320]
Underfull \hbox (badness 1087) in paragraph at lines 5748--5753
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing

[1321]
[1322]
[1323]
[1324]
[1325]
[1326]
[1327]
[1328]
[1329]
Underfull \hbox (badness 1675) in paragraph at lines 6455--6461
[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe
fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class

[1330]
[1331]
[1332]
[1333]
Underfull \vbox (badness 10000) has occurred while \output is active
[1334]
[1335]
[1336]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has 
been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6976 \aliasA{S4}{S3Part}{S4}
                              
[1337]
[1338]
[1339]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7232 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7234 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7235 \aliasA{Math}{S4groupGeneric}{Math}
                                          
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7237 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7238 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                
[1340]
Underfull \hbox (badness 2050) in paragraph at lines 7299--7303
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing

[1341]
[1342]
[1343]
Underfull \hbox (badness 1286) in paragraph at lines 7487--7489
[]\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o
nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions,
 typ-i-cally

[1344]
[1345]
[1346]
[1347]
[1348]
[1349]
[1350]
[1351]
[1352]
[1353]
[1354]
[1355]
[1356]
[1357]
[1358]
[1359]
[1360]
[1361]
[1362]
[1363]
[1364]
[1365]
[1366]
[1367]
[1368]
[1369]
[1370]
Underfull \vbox (badness 10000) has occurred while \output is active
[1371]
[1372]
[1373]
[1374]
[1375]
[1376]
[1377]
[1378]
[1379]
[1380]
[1381]
[1382]
[1383]
[1384]
Underfull \hbox (badness 1158) in paragraph at lines 10494--10497
[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/zi4/m/sl/10 https : / / johnmchambers . su . domains /

[1385]
Underfull \hbox (badness 1852) in paragraph at lines 10572--10576
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,

[1386]
[1387]
[1388]
[1389]) (./parallel-pkg.tex
[1390]
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' []
[]RNG[][][]: see

[1391]
[1392]
[1393]
[1394]
[1395]
Underfull \hbox (badness 1320) in paragraph at lines 300--303
[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.

[1396]
[1397]
[1398]
[1399]
[1400]
[1401]
[1402]
[1403]
[1404]
[1405]
[1406]
[1407]
[1408]
[1409]
[1410]
[1411]
[1412]
Underfull \hbox (badness 3386) in paragraph at lines 1400--1403
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10
 .Random.seed []\T1/ptm/m/n/10 when the

[1413]
[1414]) (./splines-pkg.tex
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 <bates@stat.wisc.edu> \T1/ptm
/m/n/10 and William N. Ven-ables

[1415]
[1416]
[1417]
[1418]
[1419]
[1420]
[1421]
[1422]
[1423]
[1424]
[1425]
[1426]
[1427]
[1428]
[1429]
[1430]) (./stats-pkg.tex
Chapter 10.

[1431]
[1432]
[1433]
[1434]
[1435]
[1436]
[1437]
[1438]
[1439]
[1440]
[1441]
[1442]
[1443]
[1444]
Underfull \hbox (badness 1412) in paragraph at lines 901--903
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 
lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo
r

[1445]
[1446]
[1447]
[1448]
[1449]
[1450]
[1451]
[1452]
Underfull \hbox (badness 2503) in paragraph at lines 1389--1392
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1453]
[1454]
[1455]
[1456]
[1457]
[1458]
[1459]
[1460]
[1461]
[1462]
[1463]
[1464]
[1465]
[1466]
[1467]
[1468]
[1469]
[1470]
[1471]
[1472]
[1473]
[1474]
[1475]
[1476]
[1477]
[1478]
[1479]
[1480]
[1481]
[1482]
[1483]
[1484]
[1485]
[1486]
Underfull \hbox (badness 2503) in paragraph at lines 3561--3564
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1487]
[1488]

Package amsmath Warning: Foreign command \atopwithdelims;
(amsmath)                \frac or \genfrac should be used instead
(amsmath)                 on input line 3674.


[1489]
[1490]
[1491]
[1492]
[1493]
[1494]
[1495]
[1496]
[1497]
[1498]
[1499]
[1500]
[1501]
[1502]
[1503]
[1504]
[1505]
[1506]
Underfull \hbox (badness 3989) in paragraph at lines 4820--4827
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =

[1507]
[1508]
[1509]
[1510]
[1511]
[1512]
[1513]
[1514]
[1515]
[1516]
Underfull \hbox (badness 2556) in paragraph at lines 5474--5477
[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[
]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 
"filter"[]\T1/ptm/m/n/10 . For

[1517]
[1518]
[1519]
[1520]
[1521]
[1522]
[1523]
Underfull \hbox (badness 2503) in paragraph at lines 5886--5890
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1524]
[1525]
[1526]
[1527]
[1528]
[1529]
[1530]
[1531]
[1532]
[1533]
[1534]
[1535]
[1536]
Underfull \hbox (badness 7081) in paragraph at lines 6678--6681
[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c
an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in
g method

Underfull \hbox (badness 10000) in paragraph at lines 6682--6684
[]\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-
gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also

[1537]
[1538]
[1539]
[1540]
[1541]
[1542]
Underfull \vbox (badness 10000) has occurred while \output is active
[1543]
[1544]
[1545]
Underfull \vbox (badness 10000) has occurred while \output is active
[1546]
[1547]
[1548]
[1549]
[1550]
Underfull \hbox (badness 10000) in paragraph at lines 7578--7581
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/zi4/m/sl/10 dist[][][]()[]\T1/ptm/m/n/10 , the

[1551]
[1552]
[1553]
[1554]
[1555]
[1556]
Underfull \vbox (badness 3803) has occurred while \output is active
[1557]
[1558]
[1559]
[1560]
[1561]
[1562]
[1563]
[1564]
[1565]
[1566]
[1567]
[1568]
[1569]
[1570]
[1571]
[1572]
Underfull \vbox (badness 3803) has occurred while \output is active
[1573]
[1574]
[1575]
[1576]
[1577]
[1578]
Underfull \hbox (badness 2626) in paragraph at lines 9275--9278
[]\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\
T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If

[1579]
Underfull \hbox (badness 2503) in paragraph at lines 9382--9386
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1580]
[1581]
[1582]
[1583]
[1584]
[1585]
[1586]
[1587]
[1588]
[1589]
[1590]
[1591]
[1592]
[1593]
[1594]
[1595]
[1596]
[1597]
[1598]
[1599]
[1600]
Underfull \hbox (badness 4518) in paragraph at lines 10730--10735
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1601]
[1602]
[1603]
[1604]
[1605]
Underfull \hbox (badness 2142) in paragraph at lines 11092--11095
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

Underfull \hbox (badness 1253) in paragraph at lines 11111--11114
[]\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t
o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac
h IWLS it-er-a-tion. Hence,

[1606]
Underfull \hbox (badness 1708) in paragraph at lines 11173--11177
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:

[1607]
[1608]
[1609]
[1610]
[1611]
[1612]
Underfull \hbox (badness 1694) in paragraph at lines 11569--11572
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

[1613]
[1614]
[1615]
[1616]
[1617]
[1618]
[1619]
[1620]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.12050 \aliasA{hat}{influence.measures}{hat}
                                             
[1621]
[1622]
Underfull \hbox (badness 1484) in paragraph at lines 12195--12197
[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists
 mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing

[1623]
[1624]
[1625]
[1626]
[1627]
[1628]
[1629]
[1630]
[1631]
[1632]
Underfull \hbox (badness 10000) in paragraph at lines 12782--12784
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d
efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit =

[1633]
[1634]
[1635]
[1636]
[1637]
Underfull \hbox (badness 2894) in paragraph at lines 13124--13128
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method

[1638]
[1639]
[1640]
[1641]
[1642]
[1643]
[1644]
Underfull \hbox (badness 1496) in paragraph at lines 13552--13558
[]\T1/ptm/m/n/10 Gunar Schr�er and Di-et-rich Tren-kler (1995). Ex-act and Ran-
dom-iza-tion Dis-tri-bu-tions of

[1645]
[1646]
[1647]
[1648]
[1649]
[1650]
Underfull \hbox (badness 4518) in paragraph at lines 13955--13960
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1651]
[1652]
[1653]
[1654]
[1655]
[1656]
[1657]
[1658]
[1659]
[1660]
Underfull \hbox (badness 4518) in paragraph at lines 14617--14622
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1661]
[1662]
[1663]
Underfull \hbox (badness 6412) in paragraph at lines 14757--14761
[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int
erpolate", statistics =

Underfull \hbox (badness 1199) in paragraph at lines 14764--14766
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is

[1664]
[1665]
[1666]
[1667]
[1668]
[1669]
[1670]
[1671]
[1672]
[1673]
[1674]
[1675]
[1676]
[1677]
[1678]
[1679]
[1680]
[1681]
Underfull \hbox (badness 2503) in paragraph at lines 15841--15845
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1682]
[1683]
[1684]
[1685]
[1686]
[1687]
[1688]
[1689]
Underfull \hbox (badness 10000) in paragraph at lines 16354--16360
[]\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to

Underfull \hbox (badness 1867) in paragraph at lines 16354--16360
[]\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model.
response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\
T1/ptm/m/n/10 sums any terms

[1690]
[1691]
[1692]
[1693]
[1694]
[1695]
[1696]
[1697]
[1698]
[1699]
[1700]
[1701]
[1702]
[1703]
[1704]
[1705]
[1706]
[1707]
[1708]
[1709]
[1710]
[1711]
[1712]
[1713]
[1714]
[1715]
[1716]
Underfull \hbox (badness 1158) in paragraph at lines 18012--18015
[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T
1/ptm/m/n/10 as the data ar-gu-ment. The ac-

[1717]
[1718]
Underfull \vbox (badness 10000) has occurred while \output is active
[1719]
Underfull \vbox (badness 10000) has occurred while \output is active
[1720]
[1721]
[1722]
[1723]
[1724]
[1725]
[1726]
[1727]
[1728]
[1729]
[1730]
[1731]
[1732]
[1733]
Underfull \hbox (badness 1377) in paragraph at lines 19055--19060
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 19060--19063
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 2343) in paragraph at lines 19073--19077
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 3471) in paragraph at lines 19073--19077
\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) +
 reltol) []\T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 19081--19085
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if

[1734]
[1735]
[1736]
Underfull \vbox (badness 10000) has occurred while \output is active
[1737]
Overfull \hbox (15.73795pt too wide) in paragraph at lines 19306--19306
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

Overfull \hbox (3.75941pt too wide) in paragraph at lines 19309--19309
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 

[1738]
[1739]
[1740]
[1741]
[1742]
[1743]
[1744]
Underfull \hbox (badness 1337) in paragraph at lines 19771--19774
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1745]
[1746]
[1747]
[1748]
[1749]
[1750]
[1751]
[1752]
[1753]
Underfull \hbox (badness 10000) in paragraph at lines 20240--20246
\T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty
 = cook.lty, col = cook.col, text.col

[1754]
[1755]
[1756]
[1757]
[1758]
[1759]
[1760]
Underfull \hbox (badness 1194) in paragraph at lines 20667--20670
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence

[1761]
[1762]
[1763]
[1764]
[1765]
[1766]
Underfull \hbox (badness 2503) in paragraph at lines 21045--21048
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3919) in paragraph at lines 21072--21074
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" 
[]\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson

[1767]
[1768]
[1769]
[1770]
[1771]
[1772]
[1773]
[1774]
[1775]
[1776]
[1777]
[1778]
[1779]
[1780]
[1781]
[1782]
[1783]
[1784]
Underfull \hbox (badness 10000) in paragraph at lines 22150--22156
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,

[1785]
[1786]
[1787]
[1788]
[1789]
[1790]
[1791]
[1792]
[1793]
[1794]
[1795]
[1796]
[1797]
[1798]
[1799]
[1800]
[1801]
[1802]
[1803]
[1804]
[1805]
[1806]
[1807]
[1808]
[1809]
Underfull \hbox (badness 1337) in paragraph at lines 23626--23632
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1810]
[1811]
[1812]
[1813]
[1814]
[1815]
[1816]
[1817]
Underfull \hbox (badness 1436) in paragraph at lines 24116--24119
\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2,

[1818]
Underfull \hbox (badness 10000) in paragraph at lines 24254--24255
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o
rg / wiki / Quantile # Estimating _ quantiles _ from _ a _

[1819]
[1820]
[1821]
[1822]
[1823]
[1824]
[1825]
[1826]
[1827]
[1828]
[1829]
[1830]
[1831]
[1832]
[1833]
[1834]
Underfull \hbox (badness 1824) in paragraph at lines 25224--25230
[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are 
first re-placed by al-ter-

Underfull \hbox (badness 1033) in paragraph at lines 25224--25230
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where

[1835]
Underfull \hbox (badness 10000) in paragraph at lines 25245--25248
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = 
runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] =

[1836]
[1837]
[1838]
[1839]
[1840]
[1841]
[1842]
[1843]
[1844]
Underfull \hbox (badness 2165) in paragraph at lines 25820--25825
[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T
1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,

[1845]
[1846]
[1847]
[1848]
Underfull \hbox (badness 1867) in paragraph at lines 26030--26032
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

Underfull \hbox (badness 10000) in paragraph at lines 26046--26050
[]\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb
ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <-

[1849]
[1850]
[1851]
[1852]
[1853]
[1854]
[1855]
[1856]
[1857]
[1858]
[1859]
[1860]
[1861]
[1862]
[1863]
[1864]
[1865]
[1866]
[1867]
[1868]
[1869]
[1870]
[1871]
[1872]
[1873]
Underfull \vbox (badness 10000) has occurred while \output is active
[1874]
[1875]
Underfull \hbox (badness 3514) in paragraph at lines 27698--27703
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1876]
[1877]
[1878]
[1879]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 27932--27932
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 

Underfull \hbox (badness 3514) in paragraph at lines 27968--27974
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1880]
Overfull \hbox (14.22568pt too wide) in paragraph at lines 28028--28028
 []            \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=
1e-11, nDcentral=TRUE), trace=TRUE)[] 

[1881]
[1882]
[1883]
[1884]
Underfull \hbox (badness 3514) in paragraph at lines 28201--28206
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1885]
Underfull \hbox (badness 3514) in paragraph at lines 28288--28293
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1886]
Underfull \hbox (badness 3514) in paragraph at lines 28353--28358
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1887]
[1888]
Underfull \hbox (badness 3514) in paragraph at lines 28447--28452
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1889]
[1890]
Underfull \hbox (badness 6691) in paragraph at lines 28539--28544
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[]
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1891]
[1892]
[1893]
[1894]
[1895]
[1896]
[1897]
[1898]
Underfull \hbox (badness 4024) in paragraph at lines 29026--29029
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which

[1899]
[1900]
[1901]
[1902]
[1903]
[1904]
[1905]
[1906]
[1907]
[1908]
Underfull \hbox (badness 5431) in paragraph at lines 29629--29631
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if

[1909]
[1910]
[1911]
Underfull \hbox (badness 5431) in paragraph at lines 29839--29842
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if

[1912]
[1913]
[1914]
[1915]
[1916]
[1917]
Underfull \hbox (badness 1337) in paragraph at lines 30154--30158
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1918]
[1919]
Underfull \hbox (badness 1127) in paragraph at lines 30291--30294
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate
 only for

[1920]
[1921]
[1922]
Underfull \hbox (badness 1616) in paragraph at lines 30497--30500
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when

[1923]
[1924]
[1925]
[1926]
[1927]
[1928]
[1929]
[1930]
[1931]
[1932]
[1933]
[1934]
[1935]
[1936]
[1937]
[1938]
[1939]
[1940]
[1941]
[1942]
[1943]
Underfull \hbox (badness 3557) in paragraph at lines 31724--31728
[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non-
[]\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re
ct []\T1/zi4/m/sl/10 interval =

[1944]
[1945]
[1946]
Underfull \vbox (badness 10000) has occurred while \output is active
[1947]
[1948]
[1949]
Underfull \hbox (badness 1337) in paragraph at lines 32091--32095
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1950]
[1951]
[1952]
[1953]
[1954]
[1955]
[1956]
[1957]
[1958]
Underfull \hbox (badness 1337) in paragraph at lines 32619--32623
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1959]
[1960]
[1961]
Overfull \hbox (0.71648pt too wide) in paragraph at lines 32827--32827
 []\T1/zi4/m/n/9 wilcox.test( 4:2,      3:1,     paired=TRUE) # Warning:  canno
t compute exact p-value with ties[] 

[1962]
[1963]
[1964]
Overfull \hbox (19.71954pt too wide) in paragraph at lines 32988--32988
 []      \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep
s = getOption("ts.eps"), ...)[] 

[1965]
[1966]
[1967]
[1968]
[1969]) (./stats4-pkg.tex
[1970]
Chapter 11.

[1971]
[1972]
[1973]
Underfull \vbox (badness 10000) has occurred while \output is active
[1974]
Underfull \vbox (badness 10000) has occurred while \output is active
[1975]
[1976]
[1977]
[1978]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas
h.methods}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                  
[1979]
[1980]
[1981]) (./tcltk-pkg.tex
[1982]
Chapter 12.

[1983]
[1984]
[1985]
[1986]
[1987]
[1988]
[1989]
Underfull \vbox (badness 10000) has occurred while \output is active
[1990]
Underfull \vbox (badness 10000) has occurred while \output is active
[1991]
Underfull \hbox (badness 1546) in paragraph at lines 672--679
[]\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-
ing any Tk or Tcl com-mand by sim-ply run-ning

[1992]
[1993]
[1994]
[1995]
[1996]
Underfull \vbox (badness 10000) has occurred while \output is active
[1997]
[1998]
[1999]
[2000]
[2001]
[2002]
[2003]
[2004]) (./tools-pkg.tex
Chapter 13.

[2005]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.


[2006]
Underfull \hbox (badness 3039) in paragraph at lines 167--170
[]\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil
l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas

[2007]
[2008]
Underfull \hbox (badness 1308) in paragraph at lines 288--301
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

Underfull \hbox (badness 4967) in paragraph at lines 288--301
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b
ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 288--301
[]\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format
InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 
, []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 288--301
[]\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi
s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and

[2009]
[2010]
Underfull \hbox (badness 3039) in paragraph at lines 392--394
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi
ne to use. Over-rides any

[2011]
Underfull \hbox (badness 1142) in paragraph at lines 464--468
\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory

[2012]
[2013]
[2014]
[2015]
[2016]
[2017]
[2018] [2019]
[2020]
[2021]
[2022]
[2023]
[2024]
Underfull \hbox (badness 1014) in paragraph at lines 1220--1222
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

Underfull \hbox (badness 7238) in paragraph at lines 1226--1228
[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous

[2025]
Underfull \hbox (badness 10000) in paragraph at lines 1263--1266
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1263--1266
[]\T1/zi4/m/sl/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and 
[]\T1/zi4/m/sl/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,

[2026]
[2027]
[2028]
[2029]
[2030]
[2031]
Underfull \hbox (badness 10000) in paragraph at lines 1637--1640
[]\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/sl/10 CRAN_aliases_db[]\T1/ptm
/m/n/10 , []\T1/zi4/m/sl/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10
 CRAN_current_db []\T1/ptm/m/n/10 and

[2032]
[2033]
Underfull \hbox (badness 4096) in paragraph at lines 1756--1764
\T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

Underfull \hbox (badness 1082) in paragraph at lines 1766--1768
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 for all known trees (see

[2034]
[2035]
[2036]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1967 \aliasA{GSC}{find\_gs\_cmd}{GSC}
                                       
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC
MD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1968 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                  
[2037]
[2038]
[2039]
[2040]
[2041]
[2042]
[2043]
[2044]
Underfull \hbox (badness 3386) in paragraph at lines 2442--2445
[]\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/sl/10 as.Rconcordance []\T1
/ptm/m/n/10 searches for strings match-ing the pat-tern of

[2045]
[2046]
Underfull \hbox (badness 4096) in paragraph at lines 2582--2590
\T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

[2047]
[2048]
[2049]
[2050]
[2051]
[2052]
[2053]
[2054]
[2055]
[2056]
[2057]
[2058]
[2059]
[2060]
[2061]
Underfull \hbox (badness 1424) in paragraph at lines 3516--3518
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
-tor of links, as re-turned by

[2062]
[2063]
[2064]
[2065]
[2066]
[2067]
[2068]
[2069]
[2070]
[2071]
[2072]
Underfull \hbox (badness 10000) in paragraph at lines 4232--4234
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,

[2073]
[2074]
[2075]
Underfull \hbox (badness 10000) in paragraph at lines 4388--4391
[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/sl/10 texi2dvi []\T1/ptm/m/n/10 
5.0 and later; []\T1/zi4/m/sl/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-
tion

[2076]
[2077]
[2078]
[2079]
[2080]
Underfull \hbox (badness 1796) in paragraph at lines 4745--4750
[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/sl/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/sl/10 type =
=

[2081]
[2082]
Underfull \hbox (badness 1838) in paragraph at lines 4831--4837
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

Underfull \hbox (badness 10000) in paragraph at lines 4831--4837
\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file

[2083]
[2084]
[2085]
[2086]
Underfull \hbox (badness 2197) in paragraph at lines 5112--5122
[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/sl/10 available.packages[][][][]\T1/ptm/m/n/10 :

[2087]
Underfull \hbox (badness 1571) in paragraph at lines 5178--5182
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by

[2088]
[2089]
[2090]
[2091]) (./utils-pkg.tex
[2092]
Chapter 14.

[2093]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/sl/10 insertions[]\T1/ptm/m/n/10 ',

[2094]
[2095]
[2096]
[2097]
[2098]
[2099]
[2100]
[2101]
[2102]
[2103]
Underfull \hbox (badness 10000) in paragraph at lines 728--734
[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/sl/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/sl/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 728--734
[]\T1/zi4/m/sl/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10
 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the

[2104]
[2105]
[2106]
Underfull \hbox (badness 3861) in paragraph at lines 934--939
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/sl/10 
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,

[2107]
[2108]
[2109]
Underfull \hbox (badness 10000) in paragraph at lines 1139--1141
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing

[2110]
[2111]
[2112]
Underfull \vbox (badness 10000) has occurred while \output is active
[2113]
[2114]
[2115]
[2116]
[2117]
Underfull \hbox (badness 1371) in paragraph at lines 1666--1668
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to

[2118]
[2119]
[2120]
[2121]
[2122]
[2123]
[2124]
[2125]
[2126]
[2127]
[2128]
[2129]
Underfull \hbox (badness 2057) in paragraph at lines 2386--2388
[]\T1/ptm/m/n/10 None for []\T1/zi4/m/sl/10 chooseCRANmirror()[]\T1/ptm/m/n/10 
, this func-tion is in-voked for its side ef-fect of up-dat-ing

[2130]
Underfull \hbox (badness 2150) in paragraph at lines 2461--2468
[]\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/sl/10 citation() []\T1
/ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print

Underfull \hbox (badness 1400) in paragraph at lines 2461--2468
\T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I
f a pack-age has more

[2131]
[2132]
[2133]
Underfull \vbox (badness 3803) has occurred while \output is active
[2134]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2738 ... the Clipboard in MS Windows}{clipboard}
                                                  
[2135]
[2136]
[2137]
[2138]
[2139]
[2140]
[2141]
[2142]
[2143]
[2144]
[2145]
[2146]
[2147]
[2148]
[2149]
[2150]
[2151]
[2152]
[2153]
[2154]
[2155]
Underfull \hbox (badness 6842) in paragraph at lines 4048--4053
[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/sl/10 "libcurl" []\T1/ptm/m/n/1
0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use


[2156]
Underfull \hbox (badness 1430) in paragraph at lines 4111--4115
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the []\T1/zi4/m/sl/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the

[2157]
Underfull \hbox (badness 1184) in paragraph at lines 4182--4198
[]\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/sl/10 method = "libcurl"[]\T1/ptm
/m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS

Underfull \hbox (badness 1019) in paragraph at lines 4182--4198
\T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/sl/10 "Schannel"[]\T1/ptm/m/n/10 '. If
 it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari-

Underfull \hbox (badness 1668) in paragraph at lines 4182--4198
\T1/ptm/m/n/10 able []\T1/zi4/m/sl/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s
et to a path to a cer-tifi-cate bun-dle file, usu-ally named

[2158]
[2159]
Underfull \hbox (badness 10000) in paragraph at lines 4332--4334
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/sl/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and

[2160]
[2161]
[2162]
[2163]
[2164]
[2165]
[2166]
[2167]
[2168]
[2169]
[2170]
[2171]
[2172]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5111 ...mat Unordered and Ordered Lists}{format}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5111 ...mat Unordered and Ordered Lists}{format}
                                                  
[2173]
[2174]
[2175]
[2176]
[2177]
[2178]
[2179]
[2180]
Underfull \hbox (badness 1622) in paragraph at lines 5634--5638
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the

[2181]
[2182]
[2183]
[2184]
[2185]
[2186]
Underfull \hbox (badness 1448) in paragraph at lines 6019--6024
[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing

[2187]
[2188]
[2189]
[2190]
[2191]
[2192]
[2193]
[2194]
Underfull \hbox (badness 1371) in paragraph at lines 6567--6569
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to

[2195]
[2196]
Underfull \hbox (badness 1502) in paragraph at lines 6656--6662
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

Underfull \hbox (badness 2103) in paragraph at lines 6656--6662
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file

[2197]
[2198]
Underfull \hbox (badness 10000) in paragraph at lines 6833--6842
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,

Underfull \hbox (badness 3354) in paragraph at lines 6833--6842
\T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/sl/10 /html/packages.html\T1
/ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/sl/10 make.packages.html
[][][]()[]\T1/ptm/m/n/10 .

[2199]
Underfull \hbox (badness 2150) in paragraph at lines 6895--6898
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See

[2200]
[2201]
Underfull \hbox (badness 3118) in paragraph at lines 7034--7036
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for

[2202]
[2203]
[2204]
Underfull \hbox (badness 1325) in paragraph at lines 7213--7217
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/sl/10 available.pack
ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able

[2205]
Underfull \hbox (badness 1424) in paragraph at lines 7306--7309
[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to

[2206]
Underfull \hbox (badness 3219) in paragraph at lines 7378--7385
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/s
l/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-

Underfull \hbox (badness 5175) in paragraph at lines 7378--7385
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

Underfull \hbox (badness 1342) in paragraph at lines 7378--7385
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by

Underfull \hbox (badness 1596) in paragraph at lines 7378--7385
[][][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")[]
\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 type = "both" []\T1/ptm/m/n/10 will be silen
tly

Underfull \hbox (badness 2932) in paragraph at lines 7386--7389
[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/sl/10 type = "source" []\T1/p
tm/m/n/10 al-ways works pro-vided the pack-age con-tains no

[2207]
[2208]
Underfull \hbox (badness 1024) in paragraph at lines 7515--7518
[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/sl/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 , ] []\T1/
ptm/m/n/10 will

Underfull \hbox (badness 10000) in paragraph at lines 7548--7553
[][][]\T1/zi4/m/sl/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s
l/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,

[2209]
Underfull \hbox (badness 5133) in paragraph at lines 7607--7611
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each
 pack-age's

[2210]
[2211]
[2212]
[2213]
[2214]
[2215]
[2216]
[2217]
[2218]
[2219]
[2220]
Underfull \hbox (badness 10000) in paragraph at lines 8271--8273
[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/sl/10 methods(..)[]\T1/pt
m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class

[2221]
[2222]
[2223]
[2224]
[2225]
[2226]
[2227]
[2228] [2229]
[2230]
[2231]
[2232]
[2233]
Underfull \hbox (badness 2310) in paragraph at lines 9058--9063
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,

[2234]
[2235]
[2236]
[2237]
[2238]
[2239]
[2240]
[2241]
[2242]
Underfull \hbox (badness 1248) in paragraph at lines 9629--9633
[]\T1/zi4/m/sl/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the

[2243]
Underfull \hbox (badness 1789) in paragraph at lines 9707--9709
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the

[2244]
[2245]
[2246]
[2247]
Underfull \hbox (badness 2600) in paragraph at lines 9931--9934
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic;
 de-faults to

[2248]
[2249]
[2250]
[2251]
[2252]
[2253]
[2254]
[2255]
[2256]
Underfull \hbox (badness 1097) in paragraph at lines 10568--10571
[]\T1/ptm/m/n/10 The name []\T1/zi4/m/sl/10 "clipboard" []\T1/ptm/m/n/10 may al
so be used on Win-dows, in which case

[2257]
[2258]
Underfull \hbox (badness 3000) in paragraph at lines 10704--10709
[][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
sl/10 read.table[][][][]\T1/ptm/m/n/10 ;

[2259]
[2260]
[2261]
[2262]
[2263]
[2264]
[2265]
[2266]
[2267]
Underfull \hbox (badness 2134) in paragraph at lines 11299--11304
[][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
sl/10 write.table[][][][]\T1/ptm/m/n/10 ;

[2268]
Underfull \hbox (badness 10000) in paragraph at lines 11355--11360
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for


Underfull \hbox (badness 10000) in paragraph at lines 11355--11360
[]\T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 HKEY_C
LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/
10 ,

[2269]
[2270]
[2271]
[2272]
[2273]
[2274]
[2275]
[2276]
Underfull \hbox (badness 1824) in paragraph at lines 11853--11857
\T1/zi4/m/sl/10 / / en . wikipedia . org / w / index . php ? title = Roman _ nu
merals & oldid = 1188781837$[][]\T1/ptm/m/n/10 . Ac-cessed

[2277]
[2278]
[2279]
[2280]
[2281]
[2282]
[2283]
Underfull \hbox (badness 4060) in paragraph at lines 12299--12302
[]\T1/ptm/m/n/10 If `[]\T1/zi4/m/sl/10 --default-packages[]\T1/ptm/m/n/10 ' is 
not used, then []\T1/zi4/m/sl/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-
ment vari-able

Overfull \hbox (18.77168pt too wide) in paragraph at lines 12322--12322
 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 

[2284]
[2285]
[2286]
[2287]
Underfull \hbox (badness 2150) in paragraph at lines 12577--12579
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac
s / manual /

[2288]
[2289]
[2290]
[2291]
Underfull \hbox (badness 10000) in paragraph at lines 12797--12801
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/sl/10 stylepath []\T1/ptm/m/n/10 
is now taken from the en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 12830--12836
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a

[2292]
Underfull \hbox (badness 2762) in paragraph at lines 12845--12851
\T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin
ce 2018). Ei-ther set

[2293]
[2294]
Underfull \hbox (badness 1009) in paragraph at lines 13020--13032
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If

Underfull \hbox (badness 4779) in paragraph at lines 13060--13062
[]\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI ([]\T1/zi4/m/sl/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do
ws and

[2295]
Underfull \hbox (badness 1077) in paragraph at lines 13090--13097
\T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p
er-sonal' di-rec-tory, oth-er-wise to

[2296]
[2297]
[2298]
[2299]
[2300]
[2301]
Underfull \hbox (badness 3780) in paragraph at lines 13515--13521
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\
T1/zi4/m/sl/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via

[2302]
Underfull \hbox (badness 2635) in paragraph at lines 13533--13536
[]\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/sl/10 CRAN[]\T1/ptm/m/n/10 ' is treate
d spe-cially: the value is taken from the cur-rent set-ting of

[2303]
[2304]
[2305]
Underfull \hbox (badness 2302) in paragraph at lines 13743--13745
[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call

[2306]
[2307]
[2308]
[2309]
[2310]
Underfull \hbox (badness 4441) in paragraph at lines 14042--14047
[]\T1/ptm/m/n/10 logical; if []\T1/zi4/m/sl/10 TRUE []\T1/ptm/m/n/10 (de-fault)
, [][][]\T1/zi4/m/sl/10 deparse[][][](control = \T1/ptm/m/sl/10 control\T1/zi4/
m/sl/10 ) []\T1/ptm/m/n/10 will not have

Underfull \hbox (badness 5970) in paragraph at lines 14051--14054
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive

[2311]
[2312]
[2313]
[2314]
[2315]
[2316]
[2317]
Underfull \hbox (badness 2932) in paragraph at lines 14482--14489
[]\T1/ptm/m/n/10 If []\T1/zi4/m/sl/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa
ult) then the avail-able syn-tax ob-jects are con-sulted in turn,

Underfull \hbox (badness 1688) in paragraph at lines 14482--14489
\T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/sl/10 extension []\T1/ptm/m/n
/10 com-po-nent matches (as a reg-exp) the file name. Ob-

[2318]
[2319]
[2320]
[2321]
Underfull \hbox (badness 6510) in paragraph at lines 14794--14798
[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 is set 
to the com-mand []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men
t vari-able

[2322]
Underfull \hbox (badness 10000) in paragraph at lines 14801--14804
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / pubs . opengroup 
. org /

Underfull \hbox (badness 2245) in paragraph at lines 14801--14804
\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX

[2323]
[2324]
[2325]
[2326]
[2327]
[2328]
[2329]
[2330]
[2331]
[2332]
Underfull \hbox (badness 10000) in paragraph at lines 15474--15479
[]\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/sl/10 destdir []\T1/ptm/m/n/10 a
nd []\T1/zi4/m/sl/10 dependencies []\T1/ptm/m/n/10 to be passed to

Underfull \hbox (badness 3861) in paragraph at lines 15474--15479
[][][]\T1/zi4/m/sl/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 max_repo_cache_age [
]\T1/ptm/m/n/10 and

Underfull \hbox (badness 1052) in paragraph at lines 15480--15482
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See

Underfull \hbox (badness 10000) in paragraph at lines 15539--15542
[][][]\T1/zi4/m/sl/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/
sl/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download
.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][
][]\T1/ptm/m/n/10 ,

[2333]
[2334]
[2335]
[2336]
[2337]
[2338]
[2339]
[2340]
[2341]
[2342]
[2343]
[2344]
[2345]
[2346]
[2347]
[2348]) (./fullrefman.ind

[2349]

[2350]

[2351]

[2352]

[2353]

[2354]

[2355]

[2356]

[2357]

[2358]

[2359]

[2360]

[2361]

[2362]

[2363]

[2364]

[2365]

[2366]

[2367]

[2368]

[2369]

[2370]

[2371]

[2372]

[2373]

[2374]

[2375]

[2376]

[2377]

[2378]

[2379]

[2380]

[2381]

[2382]

[2383]

[2384]

[2385]

[2386]

[2387]

[2388]

[2389]

[2390]

[2391]

[2392]

[2393]

[2394]

[2395]

[2396]

[2397]

[2398]

[2399]

[2400]

[2401]

[2402]

[2403]

[2404]

[2405]

[2406]

Overfull \hbox (33.3567pt too wide) in paragraph at lines 10031--10033
[]\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , 


[2407]

[2408]

[2409]

[2410]

[2411]

[2412]

Overfull \hbox (20.8567pt too wide) in paragraph at lines 11421--11423
[]\T1/zi4/m/it/10 R_AVAILABLE_PACKAGES_CACHE_CONTROL_MAX_AGE 

[2413]

[2414]

[2415]

[2416]

[2417]

[2418]

[2419]

[2420]

[2421]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 13281--13283
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends 

Overfull \hbox (5.8567pt too wide) in paragraph at lines 13283--13285
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results 


Overfull \hbox (5.8567pt too wide) in paragraph at lines 13285--13287
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings 

[2422]

[2423]

[2424]

[2425]

[2426]

[2427]

[2428]

[2429]

[2430]

[2431]) (./fullrefman.aux)

LaTeX Font Warning: Some font shapes were not available, defaults substituted.


Package rerunfilecheck Warning: File `fullrefman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.

 )
(see the transcript file for additional information)
pdfTeX warning (dest): name{Rfn.write.matrix} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.knitr} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.restore} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.setup} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.ncols} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.mathjaxr} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do
es not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lmrob} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rlm} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.nlsList} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no
t exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rBind} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cBind} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no
t exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.roundX} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.base.Rdash.deprecated} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, 
replaced by a fixed one

 </tmp/texfonts/pk/ljfour/jknappen/ec/tctt1000.600pk> </tmp/texfonts/pk/ljfour/
jknappen/ec/tctt0900.600pk></usr/share/texlive/texmf-dist/fonts/type1/public/in
consolata/Inconsolata-zi4b.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/inconsolata/Inconsolata-zi4r.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cmextra/cmbsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmib10.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw
/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8
a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi8a.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/tex
mf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/urw/times/utmri8a.pfb>
Output written on fullrefman.pdf (2464 pages, 6693934 bytes).
Transcript written on fullrefman.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./fullrefman.tex
LaTeX2e <2024-11-01> patch level 2
L3 programming layer <2025-01-18>
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2024/06/29 v1.4n Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty)
(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/mathrsfs.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty
`inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex)))))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty
(/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
(/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(/usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
(/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))
(/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
(/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))))
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
Writing index file fullrefman.idx
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
(./fullrefman.aux)
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(./fullrefman.out) (./fullrefman.out)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf-
dist/fonts/enc/dvips/base/8r.enc}] (./fullrefman.toc
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/ursfs.fd)
[1{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc}]
[2]
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[10]
[11]
[12]
[13]
[14]
[15]
[16]
[17]
[18]
[19]
[20]
[21]
[22]
[23]
[24]
[25]
[26]
[27]
[28]
[29]
[30])
[31]
[32] (./base-pkg.tex
Chapter 1.

[1]
[2]
Underfull \hbox (badness 6252) in paragraph at lines 149--157
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [
]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It

Underfull \hbox (badness 10000) in paragraph at lines 149--157
\T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T
1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base

Underfull \hbox (badness 10000) in paragraph at lines 149--157
[]\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base

Underfull \hbox (badness 10000) in paragraph at lines 149--157
\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z
i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As

Underfull \hbox (badness 4995) in paragraph at lines 149--157
[]\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by []
\T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 ,

[3]
[4]
[5]
Underfull \hbox (badness 1178) in paragraph at lines 337--340
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/
n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues

[6]
[7]
[8]
[9]
Underfull \hbox (badness 2556) in paragraph at lines 572--578
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ',

[10]
[11]
[12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[13{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}]
[14]
[15]
[16]
[17]
[18]
[19]
[20]
[21]
[22]
[23]
[24]
[25]
[26]
[27]
[28]
[29]
[30]
Underfull \vbox (badness 3803) has occurred while \output is active
[31]
[32]
[33]
[34]
[35]
[36]
Overfull \hbox (26.27782pt too wide) in paragraph at lines 2261--2261
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 

[37]
[38]
[39]
[40]
[41]
[42]
[43]
[44]
[45]
[46]
Underfull \hbox (badness 1721) in paragraph at lines 2926--2930
[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p
tm/m/n/10 ; fur-ther,

[47]
[48]
[49]
[50]
[51]
[52]
[53]
Underfull \hbox (badness 2538) in paragraph at lines 3404--3407
[]\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[]
[][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE,

[54]
[55]
[56]
[57]
[58]
[59]
[60]
[61]
[62]
[63]
[64]
[65]
[66]
Underfull \hbox (badness 10000) in paragraph at lines 4200--4202
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting

[67]
[68]
[69]
[70]
[71]
[72]
[73]
[74]
[75]
[76]
[77]
[78]
[79]
[80]
[81]
[82]
[83]
[84]
[85]
[86]
[87]
Underfull \hbox (badness 2521) in paragraph at lines 5551--5553
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by

[88]
[89]
[90]
[91]
[92]
[93]
[94]
[95]
[96]
[97]
[98]
[99]
[100]
[101]
[102]
[103]
[104]
[105]
[106]
[107]
Overfull \hbox (5.27168pt too wide) in paragraph at lines 6834--6834
 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 

[108]
[109]
[110]
[111]
[112]
[113]
[114]
[115]
[116]
[117]
[118]
[119]
Underfull \hbox (badness 1303) in paragraph at lines 7730--7737
[]\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n
/10 only. This reads the

[120]
Underfull \hbox (badness 2261) in paragraph at lines 7741--7746
\T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1
/zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen
et . net / ~conrad / software /

[121]
[122]
Underfull \vbox (badness 10000) has occurred while \output is active
[123]
[124]
[125]
[126]
[127]
[128]
[129]
[130]
[131]
Underfull \hbox (badness 2096) in paragraph at lines 8474--8478
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .

[132]
[133]
Underfull \hbox (badness 2351) in paragraph at lines 8589--8592
[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,

[134]
[135]
[136]
[137]
[138]
Underfull \hbox (badness 4479) in paragraph at lines 8906--8917
[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),

[139]
[140]
[141]
[142]
[143]
[144]
Underfull \hbox (badness 1629) in paragraph at lines 9334--9346
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

Underfull \hbox (badness 2875) in paragraph at lines 9334--9346
[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31

[145]
[146]
[147]
[148]
[149]
[150]
[151]
[152]
[153]
[154]
[155]
[156]
[157]
Underfull \hbox (badness 1178) in paragraph at lines 10200--10204
[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
 atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names 
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-

[158]
[159]
[160]
[161]
[162]
[163]
[164]
[165]
[166]
[167]
[168]
[169]
[170]
[171]
[172]
[173]
[174]
[175]
[176]
[177]
[178]
[179]
[180]
[181]
[182]
[183]
[184]
[185]
[186]
[187]
[188]
[189]
[190]
[191]
[192]
[193]
Underfull \hbox (badness 2744) in paragraph at lines 12540--12542
[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see

[194]
[195]
[196]
[197]
[198]
[199]
[200]
[201]
Underfull \vbox (badness 10000) has occurred while \output is active
[202]
[203]
[204]
[205]
[206]
[207]
[208]
[209]
[210]
[211]
[212]
[213]
[214]
[215]
[216]
[217]
[218]
[219]
[220]
[221]
[222]
[223]
[224]
[225]
[226]
Underfull \hbox (badness 2253) in paragraph at lines 14746--14748
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see

Underfull \hbox (badness 1490) in paragraph at lines 14781--14784
[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the

[227]
Underfull \hbox (badness 1565) in paragraph at lines 14863--14867
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and

[228]
Underfull \hbox (badness 4927) in paragraph at lines 14914--14916
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/zi4/m/n/10 fsep =

[229]
[230]
[231]
Underfull \hbox (badness 1466) in paragraph at lines 15065--15068
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and

[232]
Underfull \hbox (badness 10000) in paragraph at lines 15196--15200
[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 15207--15210
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /

[233]
[234]
[235]
[236]
[237]
Underfull \hbox (badness 3965) in paragraph at lines 15504--15508
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,

[238]
[239]
[240]
[241]
[242]
[243]
[244]
[245]
Underfull \hbox (badness 5260) in paragraph at lines 16006--16006
[]\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/
ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma
ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 ,

[246]
[247]
[248]
[249]
Underfull \hbox (badness 4429) in paragraph at lines 16296--16299
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for

[250]
[251]
Underfull \hbox (badness 10000) in paragraph at lines 16403--16405
[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/zi4/m/n/10 .format.zeros(*,

[252]
Underfull \hbox (badness 2035) in paragraph at lines 16476--16480
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 
R \T1/ptm/m/n/10 3.2.0: for use within

[253]
Underfull \vbox (badness 10000) has occurred while \output is active
[254]
[255]
[256]
[257]
[258]
[259]
[260]
[261]
[262]
Underfull \hbox (badness 2452) in paragraph at lines 17099--17103
[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 17099--17103
\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and

[263]
[264]
[265]
Underfull \hbox (badness 1092) in paragraph at lines 17273--17278
[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing

[266]
[267]
[268]
Underfull \hbox (badness 6741) in paragraph at lines 17526--17530
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,

[269]
[270]
[271]
[272]
[273]
[274]
[275]
[276]
[277]
[278]
[279]
Underfull \vbox (badness 3803) has occurred while \output is active
[280]
Underfull \vbox (badness 10000) has occurred while \output is active
[281]
[282]
[283]
[284]
[285]
[286]
[287]
[288]
[289]
[290]
Underfull \hbox (badness 1769) in paragraph at lines 18999--19002
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor

[291]
[292]
[293]
[294]
[295]
Underfull \hbox (badness 10000) in paragraph at lines 19308--19310
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /

Underfull \hbox (badness 2088) in paragraph at lines 19314--19323
[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /

[296]
[297]
[298]
[299]
[300]
[301]
[302]
[303]
[304]
[305]
Underfull \hbox (badness 1442) in paragraph at lines 19922--19924
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see

[306]
Underfull \hbox (badness 2452) in paragraph at lines 20018--20044
[][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 
as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt
m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 5726) in paragraph at lines 20018--20044
[][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en
vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma
trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][]

[307]
[308]
[309]
[310]
[311]
[312]
Underfull \hbox (badness 1248) in paragraph at lines 20416--20419
[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,

[313]
[314]
[315]
[316]
[317]
Underfull \hbox (badness 4739) in paragraph at lines 20683--20685
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see

[318]
[319]
[320]
[321]
[322]
Underfull \vbox (badness 10000) has occurred while \output is active
[323]
[324]
[325]
[326]
[327]
[328]
[329]
[330]
[331]
[332]
[333]
[334]
[335]
[336]
Underfull \hbox (badness 2469) in paragraph at lines 21851--21856
[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and

[337]
Underfull \hbox (badness 1675) in paragraph at lines 21938--21947
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3189) in paragraph at lines 21948--21961
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
 or empty, the

[338]
Underfull \hbox (badness 10000) in paragraph at lines 21996--21999
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-

Underfull \hbox (badness 4752) in paragraph at lines 21996--21999
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may 
be opened by

[339]
[340]
Underfull \hbox (badness 1014) in paragraph at lines 22130--22135
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if

[341]
[342]
[343]
[344]
[345]
[346]
[347]
[348]
[349]
[350]
[351]
[352]
[353]
Underfull \hbox (badness 1264) in paragraph at lines 22977--22985
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:

Underfull \hbox (badness 4441) in paragraph at lines 23012--23015
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,

[354]
[355]
[356]
[357]
[358]
[359]
[360]
[361]
[362]
[363]
[364]
[365]
[366]
Underfull \hbox (badness 5231) in paragraph at lines 23830--23832
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==

[367]
[368]
[369]
[370]
[371]
[372]
[373]
[374]
[375]
[376]
[377]
[378]
[379]
[380]
[381]
[382]
[383]
Underfull \hbox (badness 6380) in paragraph at lines 24940--24946
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress
ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-

Underfull \hbox (badness 1472) in paragraph at lines 24940--24946
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ 
_ Utils$[][]

[384]
[385]
[386]
[387]
[388]
[389]
[390]
[391]
[392]
Underfull \hbox (badness 2790) in paragraph at lines 25453--25456
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 25453--25456
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by

[393]
[394]
[395]
[396]
[397]
Underfull \hbox (badness 1194) in paragraph at lines 25781--25784
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls

[398]
[399]
[400]
Underfull \hbox (badness 2368) in paragraph at lines 25988--25994
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,

[401]
[402]
[403]
[404]
[405]
[406]
Underfull \hbox (badness 10000) in paragraph at lines 26378--26381
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by

[407]
[408]
[409]
[410]
[411]
[412]
[413]
[414]
[415]
[416]
Underfull \hbox (badness 10000) in paragraph at lines 27006--27008
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%

[417]
[418]
[419]
[420]
[421]
[422]
[423]
Underfull \hbox (badness 2443) in paragraph at lines 27497--27505
\T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob
-jects. For

[424]
[425]
[426]
[427]
[428]
[429]
[430]
Underfull \hbox (badness 1881) in paragraph at lines 27927--27930
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 27952--27954
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see


[431]
[432]
Underfull \hbox (badness 2142) in paragraph at lines 28093--28097
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 28150--28155
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

[433]
[434]
[435]
[436]
Underfull \hbox (badness 10000) in paragraph at lines 28446--28452
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 28446--28452
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 28446--28452
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 5878) in paragraph at lines 28459--28462
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p
tm/m/n/10 and

Underfull \hbox (badness 2689) in paragraph at lines 28485--28487
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 28531--28536
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly

[437]
Underfull \hbox (badness 2529) in paragraph at lines 28537--28548
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 28537--28548
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and

Underfull \hbox (badness 7203) in paragraph at lines 28549--28552
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and

[438]
[439]
[440]
[441]
[442]
Underfull \vbox (badness 10000) has occurred while \output is active
[443]
Underfull \hbox (badness 10000) in paragraph at lines 28967--28971
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],

[444]
[445]
Underfull \hbox (badness 10000) in paragraph at lines 29114--29117
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,

[446]
Underfull \hbox (badness 7925) in paragraph at lines 29195--29199
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to

Underfull \hbox (badness 1253) in paragraph at lines 29195--29199
[][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 ,
 which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) 
and [][][]\T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 2521) in paragraph at lines 29200--29209
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s,

[447]
[448]
[449]
[450]
[451]
[452]
[453]
[454]
[455]
[456]
[457]
[458]
[459]
[460]
[461]
[462]
Underfull \hbox (badness 2726) in paragraph at lines 30214--30217
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see

[463]
[464]
[465]
[466]
[467]
[468]
[469]
[470]
[471]
[472]
[473]
[474]
[475]
[476]
[477]
[478]
[479]
[480]
[481]
Underfull \vbox (badness 3803) has occurred while \output is active
[482]
[483]
[484]
[485]
[486]
[487]
[488]
[489]
[490]
Underfull \hbox (badness 1533) in paragraph at lines 32024--32027
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the

[491]
[492]
[493]
Underfull \hbox (badness 1163) in paragraph at lines 32195--32206
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in

[494]
[495]
[496]
[497]
[498]
[499]
[500]
Underfull \vbox (badness 3803) has occurred while \output is active
[501]
[502]
Underfull \hbox (badness 6300) in paragraph at lines 32741--32743
[]\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr
it-ing R Ex-ten-sions' man-ual:

[503]
[504]
[505]
[506]
[507]
[508]
[509]
[510]
[511]
[512]
[513]
[514]
[515]
[516]
[517]
[518]
[519]
Underfull \hbox (badness 10000) in paragraph at lines 33864--33868
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 33864--33868
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions 
of the matches are also re-turned by name.

Underfull \hbox (badness 3557) in paragraph at lines 33885--33887
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /

Underfull \hbox (badness 1122) in paragraph at lines 33888--33892
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /

[520]
[521]
Underfull \vbox (badness 10000) has occurred while \output is active
[522]
[523]
[524]
[525]
[526]
[527]
[528]
[529]
Underfull \hbox (badness 1655) in paragraph at lines 34490--34492
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for

[530]
[531]
[532]
[533]
[534]
[535]
[536]
[537]
[538]
[539]
[540]
[541]
[542]
[543]
[544]
[545]
[546]
[547]
[548]
Underfull \hbox (badness 2261) in paragraph at lines 35693--35698
[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if

[549]
[550]
[551]
[552]
[553]
[554]
[555]
[556]
[557]
[558]
[559]
[560]
[561]
[562]
[563]
[564]
Underfull \hbox (badness 3668) in paragraph at lines 36728--36732
[]\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in-
te-ger con-nec-tion de-scrip-tors for use with

[565]
Underfull \hbox (badness 10000) in paragraph at lines 36819--36830
\T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par
sing-[]c-[]command-[]line-[]arguments ?

[566]
[567]
[568]
[569]
[570]
[571]
[572]
[573]
[574]
[575]
[576]
[577]
[578]
[579]
[580]
[581]
[582]
[583]
[584]
[585]
[586]
[587]
[588]
[589]
[590]
Underfull \hbox (badness 10000) in paragraph at lines 38451--38453
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for

[591]
[592]
[593]
[594]
[595]
[596]
[597]
Underfull \hbox (badness 2913) in paragraph at lines 38869--38873
\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by

[598]
[599]
[600]
Underfull \hbox (badness 1072) in paragraph at lines 39115--39119
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

[601]
Underfull \hbox (badness 10000) in paragraph at lines 39120--39124
[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 39160--39166
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 39160--39166
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 39160--39166
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3009) in paragraph at lines 39175--39182
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

Underfull \hbox (badness 1038) in paragraph at lines 39175--39182
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 39175--39182
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 39175--39182
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from

[602]
[603]
[604]
[605]
Underfull \hbox (badness 2644) in paragraph at lines 39410--39414
[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an


[606]
[607]
[608]
Underfull \hbox (badness 1389) in paragraph at lines 39573--39580
[]\T1/ptm/m/n/10 a char-ac-ter string. The de-fault for the []\T1/zi4/m/n/10 fo
rmat []\T1/ptm/m/n/10 meth-ods is []\T1/zi4/m/n/10 "%Y-%m-%d

[609]
[610]
[611]
[612]
[613]
[614]
[615]
[616]
[617]
[618]
[619]
[620]
[621]
[622]
[623]
[624]
[625]
[626]
[627]
[628]
[629]
Underfull \hbox (badness 1158) in paragraph at lines 40939--40941
[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault

[630]
[631]
[632]
[633]
[634]
[635] [636]
[637]
[638]
[639]
Underfull \hbox (badness 1137) in paragraph at lines 41539--41545
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails

Underfull \hbox (badness 4967) in paragraph at lines 41557--41562
[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple

[640]
[641]
Underfull \hbox (badness 1616) in paragraph at lines 41677--41682
[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions

[642]
[643]
[644]
[645]
Underfull \vbox (badness 3803) has occurred while \output is active
[646]
[647]
[648]
[649]
[650]
Underfull \hbox (badness 1472) in paragraph at lines 42224--42227
[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see

[651]
[652]
[653]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 42436.


[654]
[655]
[656]
[657]
[658]
[659]
[660]
[661]
[662]
[663]
[664]
[665]
Underfull \hbox (badness 10000) in paragraph at lines 43175--43179
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca
n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4
/m/sl/10 length(bin) >

[666]
[667]
[668]
[669]
[670]
Underfull \hbox (badness 10000) in paragraph at lines 43534--43537
[][][]\T1/zi4/m/sl/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] 
[][]$https : / / developer . r-[]project . org /

[671]
[672]
[673]
Underfull \hbox (badness 10000) in paragraph at lines 43718--43722
[][][]\T1/zi4/m/sl/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s
l/10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 taskCallb
ackManager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/sl/10 https : / / developer .


[674]
[675]
[676]
[677]
[678]
[679]
[680]
[681]
[682]
[683]
Underfull \hbox (badness 10000) in paragraph at lines 44366--44369
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[]
[] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time
-[]zones /

[684]
[685]
[686]
[687]
[688]
[689]
Underfull \vbox (badness 10000) has occurred while \output is active
[690]
[691]
[692]
[693]
[694]
[695]
[696]
[697]
Underfull \hbox (badness 1990) in paragraph at lines 45282--45290
[]\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an
y er-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 45282--45290
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less

[698]
[699]
[700]
[701]
[702]
[703]
[704]
[705]
[706]
[707]
[708]
[709]
[710]
[711]
[712]
[713]
[714]
[715]
[716]
[717]
[718]
[719]
Underfull \hbox (badness 1014) in paragraph at lines 46719--46722
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me
-di-ately, even if

[720]
[721]
Underfull \hbox (badness 2401) in paragraph at lines 46852--46856
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][]("
warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a

[722]
[723]
Underfull \hbox (badness 3492) in paragraph at lines 46978--46980
[]\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/
ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e.,

[724]
[725]
Underfull \hbox (badness 2111) in paragraph at lines 47064--47069
\T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10
 is not empty, these are used as col-umn names.

[726]
[727]
[728]
Underfull \hbox (badness 4001) in paragraph at lines 47312--47314
[]\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard 
eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/sl/10 https : / / developer 
.

[729]
[730]
[731]
[732]
[733]
[734]
[735]
Underfull \hbox (badness 5417) in paragraph at lines 47713--47717
[]\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re
ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas

[736]
Underfull \hbox (badness 10000) in paragraph at lines 47774--47778
[]\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d
ard' reg-exps, in-clud-ing el-e-ments named

[737]) (./compiler-pkg.tex
[738]
Chapter 2.

[739]
[740]
[741]
[742]) (./datasets-pkg.tex
Chapter 3.

[743]
[744]
[745]
[746]
[747] [748]
[749]
[750]
[751]
[752]
[753]
[754]
[755]
[756]
[757]
[758]
[759]
Underfull \hbox (badness 1097) in paragraph at lines 1034--1038
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.

[760]
[761]
[762]
[763]
[764]
[765]
[766]
[767]
[768]
[769]
[770]
[771] [772]
[773]
[774]
[775]
[776]
[777] [778]
[779]
[780]
[781]
[782] [783]
[784]
[785]
[786]
[787]
[788]
[789]
[790]
[791]
[792]
[793]
[794]
[795]
[796]
[797]
[798]
[799]
[800]
[801]
Overfull \hbox (2.27475pt too wide) in paragraph at lines 3524--3524
 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis
t.html#Geographic%20Centers[] 

[802]
[803]
[804]
[805]
[806]
[807]
[808]
[809]
[810]
[811]
[812]
[813]
[814]
[815]
[816]
[817]
[818]
[819]
[820]
[821]
[822]
[823]
[824]
[825]) (./grDevices-pkg.tex
[826]
Chapter 4.

[827]
[828]
[829]
[830]
[831]
Underfull \hbox (badness 2221) in paragraph at lines 282--286
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[]
\T1/ptm/m/n/10 , with iden-ti-cal mean-ing to

Underfull \hbox (badness 10000) in paragraph at lines 297--302
[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/sl/10 axisTicks[][][]() []\T1
/ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1
/ptm/m/n/10 in

[832]
[833]
[834]
[835]
[836]
[837]
[838]
[839]
[840]
Underfull \hbox (badness 1424) in paragraph at lines 901--903
[][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a
nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b
e spec-i-fied as

[841]
[842]
[843]
[844]
[845]
[846]
Underfull \hbox (badness 5175) in paragraph at lines 1229--1231
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in

[847]
[848]
Underfull \hbox (badness 2512) in paragraph at lines 1348--1350
[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar
chive . org / web / 20190613001950 / http : / / efg2 . com /

[849]
[850]
[851]
[852]
[853]
Underfull \hbox (badness 1490) in paragraph at lines 1648--1653
\T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and 
[][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []
\T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10
 and

Underfull \hbox (badness 3302) in paragraph at lines 1661--1665
[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of

[854]
[855]
[856]
[857]
[858]
[859]
Underfull \hbox (badness 1325) in paragraph at lines 2076--2086
[]\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png
alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/
m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm
/m/n/10 ,

[860]
[861]
Underfull \hbox (badness 10000) in paragraph at lines 2188--2190
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of

[862]
[863]
[864]
Underfull \hbox (badness 6758) in paragraph at lines 2376--2379
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are

[865]
[866]
[867]
[868]
[869]
[870]
[871]
[872]
[873]
[874]
[875]
[876]
Underfull \hbox (badness 10000) in paragraph at lines 3132--3133


[877]
[878]
[879]
[880]
[881]
[882]
[883]
[884]
[885]
[886]
[887]
[888]
Underfull \vbox (badness 3803) has occurred while \output is active
[889]
[890]
[891]
[892]
Underfull \vbox (badness 10000) has occurred while \output is active
[893]
[894]
[895]
[896]
Underfull \hbox (badness 1418) in paragraph at lines 4410--4417
\T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H
elvetica-Narrow"[]\T1/ptm/m/n/10 ,

[897]
[898]
[899]
[900]
[901]
[902]
[903]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.4875 \aliasA{symbol}{plotmath}{symbol}
                                         [904] [905]
[906]
[907]
Underfull \vbox (badness 3803) has occurred while \output is active
[908]
[909]
Underfull \hbox (badness 1584) in paragraph at lines 5268--5270
[]\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1
/zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See

Underfull \hbox (badness 1067) in paragraph at lines 5272--5279
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-

[910]
[911]
[912]
[913]
Underfull \hbox (badness 1377) in paragraph at lines 5574--5579
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues

[914]
[915]
Underfull \hbox (badness 1377) in paragraph at lines 5678--5683
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and

[916]
Underfull \hbox (badness 7344) in paragraph at lines 5747--5749
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso

[917]
[918]
Underfull \hbox (badness 2035) in paragraph at lines 5886--5895
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 5886--5895
\T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti
ca-Narrow"[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 5886--5895
[]\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P
alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1
/zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/
ptm/m/n/10 ,

[919]
Underfull \hbox (badness 10000) in paragraph at lines 5953--5958
[]\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/
zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu /

[920]
[921]
[922]
Underfull \hbox (badness 1546) in paragraph at lines 6093--6101
[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n
/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 ,

[923]
[924]
[925]
[926]
[927]
[928]
Underfull \hbox (badness 6625) in paragraph at lines 6537--6540
[]\T1/ptm/m/n/10 Murrell, P., Ooms, J., Al-laire, J.J. (2015), "Record-ing and 
Re-play-ing the Graph-

[929]
[930]
Underfull \hbox (badness 10000) in paragraph at lines 6641--6644
[]\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (
red/green/blue) into HSV space

[931]
[932]
[933]
[934]
Overfull \hbox (9.73488pt too wide) in paragraph at lines 6878--6878
 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro
blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/
zi4/m/n/9 ):[] 

[935]
[936]
[937]
[938]
[939]
[940]
[941]
[942]
[943]
[944]
Underfull \hbox (badness 1189) in paragraph at lines 7507--7509
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of

[945]
Underfull \hbox (badness 10000) in paragraph at lines 7612--7614
[]\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C
JK lan-guages and

[946]
[947]
[948]
[949]
[950]
Underfull \hbox (badness 3780) in paragraph at lines 7927--7933
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/s
l/10 "AvantGarde"[]\T1/ptm/m/n/10 ,

[951]
[952]
[953]
[954]
[955]
[956]) (./graphics-pkg.tex
Chapter 5.

[957]
[958]
[959]
[960]
[961]
[962]
[963]
[964]
[965]
[966]
[967]
Underfull \vbox (badness 3803) has occurred while \output is active
[968]
[969]
[970]
[971]
[972]
[973]
Overfull \hbox (12.71341pt too wide) in paragraph at lines 1037--1037
 []        \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 

[974]
[975]
[976]
[977]
[978]
[979]
Underfull \hbox (badness 4634) in paragraph at lines 1410--1413
[][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor
ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1
/ptm/m/n/10 ,

[980]
[981]
[982]
[983]
[984]
[985]
[986]
[987]
[988]
[989]
[990]
[991]
[992]
[993]
[994]
[995]
[996]
Underfull \hbox (badness 1728) in paragraph at lines 2388--2390
[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10
 "n" []\T1/ptm/m/n/10 to sup-press and see also

[997]
Underfull \hbox (badness 1009) in paragraph at lines 2481--2488
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to

[998]
[999]
[1000]
[1001]
[1002]
[1003]
[1004]
[1005]
[1006]
[1007]
[1008]
[1009]
[1010]
[1011]
[1012]
[1013]
[1014]
[1015]
[1016]
[1017]
[1018]
[1019]
[1020]
Underfull \vbox (badness 10000) has occurred while \output is active
[1021]
Underfull \vbox (badness 10000) has occurred while \output is active
[1022]
[1023]
[1024]
[1025]
[1026]
[1027]
Underfull \vbox (badness 3803) has occurred while \output is active
[1028]
[1029]
[1030]
[1031]
[1032]
[1033]
[1034]
Underfull \hbox (badness 3229) in paragraph at lines 4733--4738
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see

[1035]
[1036]
[1037]
[1038]
[1039]
Underfull \hbox (badness 1107) in paragraph at lines 5233--5239
[]\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc
aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c
h),

[1040]
[1041]
Underfull \hbox (badness 10000) in paragraph at lines 5362--5365


[1042 </build/reproducible-path/r-base-4.4.3/library/graphics/help/figures/mai.
pdf>]
Underfull \hbox (badness 10000) in paragraph at lines 5423--5425


[1043 </build/reproducible-path/r-base-4.4.3/library/graphics/help/figures/oma.
pdf>]
[1044]
[1045]
[1046]
[1047]
[1048]
[1049]
[1050]
[1051]
[1052]
[1053]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6097 \aliasA{plot}{plot.default}{plot}
                                        
[1054]
[1055]
[1056]
[1057]
[1058]
[1059]
[1060]
[1061]
[1062]
[1063]
[1064]
[1065]
[1066]
[1067]
Overfull \hbox (31.57222pt too wide) in paragraph at lines 6997--6998
[][] 

[1068 </build/reproducible-path/r-base-4.4.3/library/graphics/help/figures/pch.
pdf>]
[1069]
Underfull \vbox (badness 3803) has occurred while \output is active
[1070]
[1071]
[1072]
[1073]
[1074]
[1075]
[1076]
[1077]
[1078]
[1079]
[1080]
[1081]
[1082]
[1083]
[1084]
[1085]
[1086]
[1087]
[1088]
[1089]
[1090]
[1091]
[1092]
[1093]
[1094]
[1095]
[1096]
[1097]
[1098]
[1099]
[1100]
[1101]
[1102]
Underfull \hbox (badness 4954) in paragraph at lines 9109--9111
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/sl/10 par(c("font.sub",

Underfull \hbox (badness 1019) in paragraph at lines 9111--9113
[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa
r(c("font.lab", "cex.lab",

[1103]
[1104]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9191 \HeaderA{units}{Graphical Units}{units}
                                              
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9191 \HeaderA{units}{Graphical Units}{units}
                                              
[1105]
[1106]
[1107]
[1108]) (./grid-pkg.tex
Chapter 6.

[1109]
[1110]
[1111]
[1112]
[1113]
[1114]
[1115]
[1116]
[1117]
Underfull \hbox (badness 2680) in paragraph at lines 551--554
[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an
d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal
-cu-la-tion of

[1118]
[1119]
[1120]
[1121]
[1122] [1123]
[1124]
[1125]
[1126]
[1127]
[1128]
Underfull \hbox (badness 4279) in paragraph at lines 1188--1197
[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/
ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T
1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi
ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 ,

[1129]
[1130]
[1131]
[1132]
[1133]
[1134]
[1135]
[1136]
[1137]
[1138]
[1139]
[1140]
[1141]
[1142]
[1143]
[1144]
[1145]
[1146]
[1147]
[1148]
[1149]
[1150]
[1151]
[1152]
[1153]
[1154]
[1155]
[1156]
[1157]
[1158]
[1159]
[1160]
Underfull \hbox (badness 10000) in paragraph at lines 3103--3105
[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see

[1161]
[1162]
[1163]
[1164]
[1165]
[1166]
[1167]
[1168]
[1169]
[1170]
[1171]
[1172]
[1173]
[1174]
[1175]
[1176]
Underfull \vbox (badness 10000) has occurred while \output is active
[1177]
[1178]
[1179]
[1180]
[1181]
[1182]
[1183]
[1184]
[1185]
[1186]
[1187]
[1188]
[1189]
[1190]
Underfull \hbox (badness 1067) in paragraph at lines 4842--4845
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only

[1191]
[1192]
[1193]
[1194]
[1195]
[1196]
Underfull \hbox (badness 7256) in paragraph at lines 5193--5195
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by

[1197]
[1198]
[1199]
[1200]
[1201]
[1202]
[1203]
Underfull \hbox (badness 2142) in paragraph at lines 5647--5651
[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/
10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or

[1204]
[1205]
Underfull \hbox (badness 4699) in paragraph at lines 5729--5734
[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o
b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 
and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a

[1206]
[1207]
[1208]
[1209]
[1210]
[1211]
[1212]
[1213]
[1214]
[1215]
[1216]
[1217]
[1218]
[1219]
[1220]
[1221]
[1222]
[1223]
[1224]
[1225]
[1226]
[1227]
[1228]
[1229]
[1230]
[1231]
[1232]
[1233]
[1234]
[1235]
[1236]
[1237]) (./methods-pkg.tex
[1238]
Chapter 7.

[1239]
[1240]
[1241]
[1242]
[1243]
[1244]
[1245]
[1246]
Underfull \vbox (badness 10000) has occurred while \output is active
[1247]
Underfull \vbox (badness 10000) has occurred while \output is active
[1248]
[1249]
[1250]
[1251]
[1252]
[1253]
[1254]
[1255]
[1256]
[1257]
Underfull \hbox (badness 2237) in paragraph at lines 1384--1386
[]\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te
nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s
l/10 "package"[]\T1/ptm/m/n/10 , also of class

[1258]
[1259]
[1260]
[1261]
[1262]
[1263]
[1264]
[1265]
[1266]
Underfull \hbox (badness 10000) in paragraph at lines 1980--1985
[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n
/10 can be an ob-ject of class

Underfull \hbox (badness 1038) in paragraph at lines 1980--1985
\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/
m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the

[1267]
[1268]
[1269]
Underfull \hbox (badness 2213) in paragraph at lines 2212--2217
[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/sl/10 where =

[1270]
[1271]
[1272]
[1273]
[1274]
Underfull \hbox (badness 10000) in paragraph at lines 2572--2575
[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] []
\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10
 cre-ate ob-jects of class

[1275]
[1276]
Underfull \hbox (badness 1132) in paragraph at lines 2712--2716
[]\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi
4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10
 slot of the re-turned re-sult is in

[1277]
Underfull \hbox (badness 1033) in paragraph at lines 2748--2753
\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 
re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1
0 re-stores the

[1278]
[1279]
[1280]
[1281]
[1282]
[1283]
[1284]
Underfull \hbox (badness 1102) in paragraph at lines 3305--3307
[]\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string
 name of the pack-age (with-out the ex-tra-ne-ous

[1285]
[1286]
[1287]
[1288]
[1289]
Underfull \hbox (badness 10000) in paragraph at lines 3642--3651
[]\T1/ptm/m/n/10 The

[1290]
[1291]
Underfull \hbox (badness 10000) in paragraph at lines 3762--3763
[] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi
tude = "numeric",

[1292]
Underfull \hbox (badness 10000) in paragraph at lines 3846--3847
[]\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character"
), contains =

[1293]
[1294]
[1295]
[1296]
[1297]
[1298]
[1299]
[1300]
[1301]
[1302]
Underfull \hbox (badness 1769) in paragraph at lines 4477--4483
[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10
 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar


Underfull \hbox (badness 1939) in paragraph at lines 4477--4483
[]\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [
][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u
sed by

[1303]
[1304]
[1305]
[1306]
[1307]
[1308]
[1309]
[1310]
[1311]
[1312]
Underfull \vbox (badness 10000) has occurred while \output is active
[1313]
[1314]
[1315]
Underfull \hbox (badness 4036) in paragraph at lines 5442--5445
[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m
/n/10 the method to use in re-sponse to a

[1316]
[1317]
Underfull \hbox (badness 3803) in paragraph at lines 5517--5519
[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to

[1318]
[1319]
[1320]
Underfull \hbox (badness 1087) in paragraph at lines 5748--5753
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing

[1321]
[1322]
[1323]
[1324]
[1325]
[1326]
[1327]
[1328]
[1329]
Underfull \hbox (badness 1675) in paragraph at lines 6455--6461
[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe
fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class

[1330]
[1331]
[1332]
[1333]
Underfull \vbox (badness 10000) has occurred while \output is active
[1334]
[1335]
[1336]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has 
been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6976 \aliasA{S4}{S3Part}{S4}
                              
[1337]
[1338]
[1339]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7232 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7234 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7235 \aliasA{Math}{S4groupGeneric}{Math}
                                          
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7237 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7238 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                
[1340]
Underfull \hbox (badness 2050) in paragraph at lines 7299--7303
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing

[1341]
[1342]
[1343]
Underfull \hbox (badness 1286) in paragraph at lines 7487--7489
[]\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o
nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions,
 typ-i-cally

[1344]
[1345]
[1346]
[1347]
[1348]
[1349]
[1350]
[1351]
[1352]
[1353]
[1354]
[1355]
[1356]
[1357]
[1358]
[1359]
[1360]
[1361]
[1362]
[1363]
[1364]
[1365]
[1366]
[1367]
[1368]
[1369]
[1370]
Underfull \vbox (badness 10000) has occurred while \output is active
[1371]
[1372]
[1373]
[1374]
[1375]
[1376]
[1377]
[1378]
[1379]
[1380]
[1381]
[1382]
[1383]
[1384]
Underfull \hbox (badness 1158) in paragraph at lines 10494--10497
[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/zi4/m/sl/10 https : / / johnmchambers . su . domains /

[1385]
Underfull \hbox (badness 1852) in paragraph at lines 10572--10576
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,

[1386]
[1387]
[1388]
[1389]) (./parallel-pkg.tex
[1390]
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' []
[]RNG[][][]: see

[1391]
[1392]
[1393]
[1394]
[1395]
Underfull \hbox (badness 1320) in paragraph at lines 300--303
[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.

[1396]
[1397]
[1398]
[1399]
[1400]
[1401]
[1402]
[1403]
[1404]
[1405]
[1406]
[1407]
[1408]
[1409]
[1410]
[1411]
[1412]
Underfull \hbox (badness 3386) in paragraph at lines 1400--1403
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10
 .Random.seed []\T1/ptm/m/n/10 when the

[1413]
[1414]) (./splines-pkg.tex
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 <bates@stat.wisc.edu> \T1/ptm
/m/n/10 and William N. Ven-ables

[1415]
[1416]
[1417]
[1418]
[1419]
[1420]
[1421]
[1422]
[1423]
[1424]
[1425]
[1426]
[1427]
[1428]
[1429]
[1430]) (./stats-pkg.tex
Chapter 10.

[1431]
[1432]
[1433]
[1434]
[1435]
[1436]
[1437]
[1438]
[1439]
[1440]
[1441]
[1442]
[1443]
[1444]
Underfull \hbox (badness 1412) in paragraph at lines 901--903
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 
lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo
r

[1445]
[1446]
[1447]
[1448]
[1449]
[1450]
[1451]
[1452]
Underfull \hbox (badness 2503) in paragraph at lines 1389--1392
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1453]
[1454]
[1455]
[1456]
[1457]
[1458]
[1459]
[1460]
[1461]
[1462]
[1463]
[1464]
[1465]
[1466]
[1467]
[1468]
[1469]
[1470]
[1471]
[1472]
[1473]
[1474]
[1475]
[1476]
[1477]
[1478]
[1479]
[1480]
[1481]
[1482]
[1483]
[1484]
[1485]
[1486]
Underfull \hbox (badness 2503) in paragraph at lines 3561--3564
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1487]
[1488]

Package amsmath Warning: Foreign command \atopwithdelims;
(amsmath)                \frac or \genfrac should be used instead
(amsmath)                 on input line 3674.


[1489]
[1490]
[1491]
[1492]
[1493]
[1494]
[1495]
[1496]
[1497]
[1498]
[1499]
[1500]
[1501]
[1502]
[1503]
[1504]
[1505]
[1506]
Underfull \hbox (badness 3989) in paragraph at lines 4820--4827
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =

[1507]
[1508]
[1509]
[1510]
[1511]
[1512]
[1513]
[1514]
[1515]
[1516]
Underfull \hbox (badness 2556) in paragraph at lines 5474--5477
[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[
]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 
"filter"[]\T1/ptm/m/n/10 . For

[1517]
[1518]
[1519]
[1520]
[1521]
[1522]
[1523]
Underfull \hbox (badness 2503) in paragraph at lines 5886--5890
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1524]
[1525]
[1526]
[1527]
[1528]
[1529]
[1530]
[1531]
[1532]
[1533]
[1534]
[1535]
[1536]
Underfull \hbox (badness 7081) in paragraph at lines 6678--6681
[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c
an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in
g method

Underfull \hbox (badness 10000) in paragraph at lines 6682--6684
[]\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-
gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also

[1537]
[1538]
[1539]
[1540]
[1541]
[1542]
Underfull \vbox (badness 10000) has occurred while \output is active
[1543]
[1544]
[1545]
Underfull \vbox (badness 10000) has occurred while \output is active
[1546]
[1547]
[1548]
[1549]
[1550]
Underfull \hbox (badness 10000) in paragraph at lines 7578--7581
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/zi4/m/sl/10 dist[][][]()[]\T1/ptm/m/n/10 , the

[1551]
[1552]
[1553]
[1554]
[1555]
[1556]
Underfull \vbox (badness 3803) has occurred while \output is active
[1557]
[1558]
[1559]
[1560]
[1561]
[1562]
[1563]
[1564]
[1565]
[1566]
[1567]
[1568]
[1569]
[1570]
[1571]
[1572]
Underfull \vbox (badness 3803) has occurred while \output is active
[1573]
[1574]
[1575]
[1576]
[1577]
[1578]
Underfull \hbox (badness 2626) in paragraph at lines 9275--9278
[]\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\
T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If

[1579]
Underfull \hbox (badness 2503) in paragraph at lines 9382--9386
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1580]
[1581]
[1582]
[1583]
[1584]
[1585]
[1586]
[1587]
[1588]
[1589]
[1590]
[1591]
[1592]
[1593]
[1594]
[1595]
[1596]
[1597]
[1598]
[1599]
[1600]
Underfull \hbox (badness 4518) in paragraph at lines 10730--10735
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1601]
[1602]
[1603]
[1604]
[1605]
Underfull \hbox (badness 2142) in paragraph at lines 11092--11095
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

Underfull \hbox (badness 1253) in paragraph at lines 11111--11114
[]\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t
o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac
h IWLS it-er-a-tion. Hence,

[1606]
Underfull \hbox (badness 1708) in paragraph at lines 11173--11177
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:

[1607]
[1608]
[1609]
[1610]
[1611]
[1612]
Underfull \hbox (badness 1694) in paragraph at lines 11569--11572
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

[1613]
[1614]
[1615]
[1616]
[1617]
[1618]
[1619]
[1620]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.12050 \aliasA{hat}{influence.measures}{hat}
                                             
[1621]
[1622]
Underfull \hbox (badness 1484) in paragraph at lines 12195--12197
[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists
 mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing

[1623]
[1624]
[1625]
[1626]
[1627]
[1628]
[1629]
[1630]
[1631]
[1632]
Underfull \hbox (badness 10000) in paragraph at lines 12782--12784
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d
efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit =

[1633]
[1634]
[1635]
[1636]
[1637]
Underfull \hbox (badness 2894) in paragraph at lines 13124--13128
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method

[1638]
[1639]
[1640]
[1641]
[1642]
[1643]
[1644]
Underfull \hbox (badness 1496) in paragraph at lines 13552--13558
[]\T1/ptm/m/n/10 Gunar Schr�er and Di-et-rich Tren-kler (1995). Ex-act and Ran-
dom-iza-tion Dis-tri-bu-tions of

[1645]
[1646]
[1647]
[1648]
[1649]
[1650]
Underfull \hbox (badness 4518) in paragraph at lines 13955--13960
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1651]
[1652]
[1653]
[1654]
[1655]
[1656]
[1657]
[1658]
[1659]
[1660]
Underfull \hbox (badness 4518) in paragraph at lines 14617--14622
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1661]
[1662]
[1663]
Underfull \hbox (badness 6412) in paragraph at lines 14757--14761
[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int
erpolate", statistics =

Underfull \hbox (badness 1199) in paragraph at lines 14764--14766
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is

[1664]
[1665]
[1666]
[1667]
[1668]
[1669]
[1670]
[1671]
[1672]
[1673]
[1674]
[1675]
[1676]
[1677]
[1678]
[1679]
[1680]
[1681]
Underfull \hbox (badness 2503) in paragraph at lines 15841--15845
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1682]
[1683]
[1684]
[1685]
[1686]
[1687]
[1688]
[1689]
Underfull \hbox (badness 10000) in paragraph at lines 16354--16360
[]\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to

Underfull \hbox (badness 1867) in paragraph at lines 16354--16360
[]\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model.
response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\
T1/ptm/m/n/10 sums any terms

[1690]
[1691]
[1692]
[1693]
[1694]
[1695]
[1696]
[1697]
[1698]
[1699]
[1700]
[1701]
[1702]
[1703]
[1704]
[1705]
[1706]
[1707]
[1708]
[1709]
[1710]
[1711]
[1712]
[1713]
[1714]
[1715]
[1716]
Underfull \hbox (badness 1158) in paragraph at lines 18012--18015
[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T
1/ptm/m/n/10 as the data ar-gu-ment. The ac-

[1717]
[1718]
Underfull \vbox (badness 10000) has occurred while \output is active
[1719]
Underfull \vbox (badness 10000) has occurred while \output is active
[1720]
[1721]
[1722]
[1723]
[1724]
[1725]
[1726]
[1727]
[1728]
[1729]
[1730]
[1731]
[1732]
[1733]
Underfull \hbox (badness 1377) in paragraph at lines 19055--19060
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 19060--19063
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 2343) in paragraph at lines 19073--19077
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 3471) in paragraph at lines 19073--19077
\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) +
 reltol) []\T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 19081--19085
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if

[1734]
[1735]
[1736]
Underfull \vbox (badness 10000) has occurred while \output is active
[1737]
Overfull \hbox (15.73795pt too wide) in paragraph at lines 19306--19306
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

Overfull \hbox (3.75941pt too wide) in paragraph at lines 19309--19309
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 

[1738]
[1739]
[1740]
[1741]
[1742]
[1743]
[1744]
Underfull \hbox (badness 1337) in paragraph at lines 19771--19774
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1745]
[1746]
[1747]
[1748]
[1749]
[1750]
[1751]
[1752]
[1753]
Underfull \hbox (badness 10000) in paragraph at lines 20240--20246
\T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty
 = cook.lty, col = cook.col, text.col

[1754]
[1755]
[1756]
[1757]
[1758]
[1759]
[1760]
Underfull \hbox (badness 1194) in paragraph at lines 20667--20670
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence

[1761]
[1762]
[1763]
[1764]
[1765]
[1766]
Underfull \hbox (badness 2503) in paragraph at lines 21045--21048
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3919) in paragraph at lines 21072--21074
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" 
[]\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson

[1767]
[1768]
[1769]
[1770]
[1771]
[1772]
[1773]
[1774]
[1775]
[1776]
[1777]
[1778]
[1779]
[1780]
[1781]
[1782]
[1783]
[1784]
Underfull \hbox (badness 10000) in paragraph at lines 22150--22156
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,

[1785]
[1786]
[1787]
[1788]
[1789]
[1790]
[1791]
[1792]
[1793]
[1794]
[1795]
[1796]
[1797]
[1798]
[1799]
[1800]
[1801]
[1802]
[1803]
[1804]
[1805]
[1806]
[1807]
[1808]
[1809]
Underfull \hbox (badness 1337) in paragraph at lines 23626--23632
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1810]
[1811]
[1812]
[1813]
[1814]
[1815]
[1816]
[1817]
Underfull \hbox (badness 1436) in paragraph at lines 24116--24119
\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2,

[1818]
Underfull \hbox (badness 10000) in paragraph at lines 24254--24255
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o
rg / wiki / Quantile # Estimating _ quantiles _ from _ a _

[1819]
[1820]
[1821]
[1822]
[1823]
[1824]
[1825]
[1826]
[1827]
[1828]
[1829]
[1830]
[1831]
[1832]
[1833]
[1834]
Underfull \hbox (badness 1824) in paragraph at lines 25224--25230
[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are 
first re-placed by al-ter-

Underfull \hbox (badness 1033) in paragraph at lines 25224--25230
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where

[1835]
Underfull \hbox (badness 10000) in paragraph at lines 25245--25248
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = 
runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] =

[1836]
[1837]
[1838]
[1839]
[1840]
[1841]
[1842]
[1843]
[1844]
Underfull \hbox (badness 2165) in paragraph at lines 25820--25825
[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T
1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,

[1845]
[1846]
[1847]
[1848]
Underfull \hbox (badness 1867) in paragraph at lines 26030--26032
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

Underfull \hbox (badness 10000) in paragraph at lines 26046--26050
[]\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb
ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <-

[1849]
[1850]
[1851]
[1852]
[1853]
[1854]
[1855]
[1856]
[1857]
[1858]
[1859]
[1860]
[1861]
[1862]
[1863]
[1864]
[1865]
[1866]
[1867]
[1868]
[1869]
[1870]
[1871]
[1872]
[1873]
Underfull \vbox (badness 10000) has occurred while \output is active
[1874]
[1875]
Underfull \hbox (badness 3514) in paragraph at lines 27698--27703
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1876]
[1877]
[1878]
[1879]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 27932--27932
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 

Underfull \hbox (badness 3514) in paragraph at lines 27968--27974
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1880]
Overfull \hbox (14.22568pt too wide) in paragraph at lines 28028--28028
 []            \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=
1e-11, nDcentral=TRUE), trace=TRUE)[] 

[1881]
[1882]
[1883]
[1884]
Underfull \hbox (badness 3514) in paragraph at lines 28201--28206
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1885]
Underfull \hbox (badness 3514) in paragraph at lines 28288--28293
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1886]
Underfull \hbox (badness 3514) in paragraph at lines 28353--28358
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1887]
[1888]
Underfull \hbox (badness 3514) in paragraph at lines 28447--28452
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1889]
[1890]
Underfull \hbox (badness 6691) in paragraph at lines 28539--28544
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[]
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1891]
[1892]
[1893]
[1894]
[1895]
[1896]
[1897]
[1898]
Underfull \hbox (badness 4024) in paragraph at lines 29026--29029
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which

[1899]
[1900]
[1901]
[1902]
[1903]
[1904]
[1905]
[1906]
[1907]
[1908]
Underfull \hbox (badness 5431) in paragraph at lines 29629--29631
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if

[1909]
[1910]
[1911]
Underfull \hbox (badness 5431) in paragraph at lines 29839--29842
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if

[1912]
[1913]
[1914]
[1915]
[1916]
[1917]
Underfull \hbox (badness 1337) in paragraph at lines 30154--30158
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1918]
[1919]
Underfull \hbox (badness 1127) in paragraph at lines 30291--30294
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate
 only for

[1920]
[1921]
[1922]
Underfull \hbox (badness 1616) in paragraph at lines 30497--30500
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when

[1923]
[1924]
[1925]
[1926]
[1927]
[1928]
[1929]
[1930]
[1931]
[1932]
[1933]
[1934]
[1935]
[1936]
[1937]
[1938]
[1939]
[1940]
[1941]
[1942]
[1943]
Underfull \hbox (badness 3557) in paragraph at lines 31724--31728
[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non-
[]\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re
ct []\T1/zi4/m/sl/10 interval =

[1944]
[1945]
[1946]
Underfull \vbox (badness 10000) has occurred while \output is active
[1947]
[1948]
[1949]
Underfull \hbox (badness 1337) in paragraph at lines 32091--32095
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1950]
[1951]
[1952]
[1953]
[1954]
[1955]
[1956]
[1957]
[1958]
Underfull \hbox (badness 1337) in paragraph at lines 32619--32623
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1959]
[1960]
[1961]
Overfull \hbox (0.71648pt too wide) in paragraph at lines 32827--32827
 []\T1/zi4/m/n/9 wilcox.test( 4:2,      3:1,     paired=TRUE) # Warning:  canno
t compute exact p-value with ties[] 

[1962]
[1963]
[1964]
Overfull \hbox (19.71954pt too wide) in paragraph at lines 32988--32988
 []      \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep
s = getOption("ts.eps"), ...)[] 

[1965]
[1966]
[1967]
[1968]
[1969]) (./stats4-pkg.tex
[1970]
Chapter 11.

[1971]
[1972]
[1973]
Underfull \vbox (badness 10000) has occurred while \output is active
[1974]
Underfull \vbox (badness 10000) has occurred while \output is active
[1975]
[1976]
[1977]
[1978]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas
h.methods}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                  
[1979]
[1980]
[1981]) (./tcltk-pkg.tex
[1982]
Chapter 12.

[1983]
[1984]
[1985]
[1986]
[1987]
[1988]
[1989]
Underfull \vbox (badness 10000) has occurred while \output is active
[1990]
Underfull \vbox (badness 10000) has occurred while \output is active
[1991]
Underfull \hbox (badness 1546) in paragraph at lines 672--679
[]\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-
ing any Tk or Tcl com-mand by sim-ply run-ning

[1992]
[1993]
[1994]
[1995]
[1996]
Underfull \vbox (badness 10000) has occurred while \output is active
[1997]
[1998]
[1999]
[2000]
[2001]
[2002]
[2003]
[2004]) (./tools-pkg.tex
Chapter 13.

[2005]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.


[2006]
Underfull \hbox (badness 3039) in paragraph at lines 167--170
[]\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil
l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas

[2007]
[2008]
Underfull \hbox (badness 1308) in paragraph at lines 288--301
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

Underfull \hbox (badness 4967) in paragraph at lines 288--301
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b
ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 288--301
[]\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format
InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 
, []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 288--301
[]\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi
s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and

[2009]
[2010]
Underfull \hbox (badness 3039) in paragraph at lines 392--394
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi
ne to use. Over-rides any

[2011]
Underfull \hbox (badness 1142) in paragraph at lines 464--468
\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory

[2012]
[2013]
[2014]
[2015]
[2016]
[2017]
[2018] [2019]
[2020]
[2021]
[2022]
[2023]
[2024]
Underfull \hbox (badness 1014) in paragraph at lines 1220--1222
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

Underfull \hbox (badness 7238) in paragraph at lines 1226--1228
[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous

[2025]
Underfull \hbox (badness 10000) in paragraph at lines 1263--1266
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1263--1266
[]\T1/zi4/m/sl/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and 
[]\T1/zi4/m/sl/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,

[2026]
[2027]
[2028]
[2029]
[2030]
[2031]
Underfull \hbox (badness 10000) in paragraph at lines 1637--1640
[]\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/sl/10 CRAN_aliases_db[]\T1/ptm
/m/n/10 , []\T1/zi4/m/sl/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10
 CRAN_current_db []\T1/ptm/m/n/10 and

[2032]
[2033]
Underfull \hbox (badness 4096) in paragraph at lines 1756--1764
\T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

Underfull \hbox (badness 1082) in paragraph at lines 1766--1768
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 for all known trees (see

[2034]
[2035]
[2036]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1967 \aliasA{GSC}{find\_gs\_cmd}{GSC}
                                       
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC
MD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1968 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                  
[2037]
[2038]
[2039]
[2040]
[2041]
[2042]
[2043]
[2044]
Underfull \hbox (badness 3386) in paragraph at lines 2442--2445
[]\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/sl/10 as.Rconcordance []\T1
/ptm/m/n/10 searches for strings match-ing the pat-tern of

[2045]
[2046]
Underfull \hbox (badness 4096) in paragraph at lines 2582--2590
\T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

[2047]
[2048]
[2049]
[2050]
[2051]
[2052]
[2053]
[2054]
[2055]
[2056]
[2057]
[2058]
[2059]
[2060]
[2061]
Underfull \hbox (badness 1424) in paragraph at lines 3516--3518
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
-tor of links, as re-turned by

[2062]
[2063]
[2064]
[2065]
[2066]
[2067]
[2068]
[2069]
[2070]
[2071]
[2072]
Underfull \hbox (badness 10000) in paragraph at lines 4232--4234
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,

[2073]
[2074]
[2075]
Underfull \hbox (badness 10000) in paragraph at lines 4388--4391
[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/sl/10 texi2dvi []\T1/ptm/m/n/10 
5.0 and later; []\T1/zi4/m/sl/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-
tion

[2076]
[2077]
[2078]
[2079]
[2080]
Underfull \hbox (badness 1796) in paragraph at lines 4745--4750
[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/sl/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/sl/10 type =
=

[2081]
[2082]
Underfull \hbox (badness 1838) in paragraph at lines 4831--4837
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

Underfull \hbox (badness 10000) in paragraph at lines 4831--4837
\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file

[2083]
[2084]
[2085]
[2086]
Underfull \hbox (badness 2197) in paragraph at lines 5112--5122
[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/sl/10 available.packages[][][][]\T1/ptm/m/n/10 :

[2087]
Underfull \hbox (badness 1571) in paragraph at lines 5178--5182
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by

[2088]
[2089]
[2090]
[2091]) (./utils-pkg.tex
[2092]
Chapter 14.

[2093]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/sl/10 insertions[]\T1/ptm/m/n/10 ',

[2094]
[2095]
[2096]
[2097]
[2098]
[2099]
[2100]
[2101]
[2102]
[2103]
Underfull \hbox (badness 10000) in paragraph at lines 728--734
[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/sl/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/sl/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 728--734
[]\T1/zi4/m/sl/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10
 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the

[2104]
[2105]
[2106]
Underfull \hbox (badness 3861) in paragraph at lines 934--939
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/sl/10 
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,

[2107]
[2108]
[2109]
Underfull \hbox (badness 10000) in paragraph at lines 1139--1141
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing

[2110]
[2111]
[2112]
Underfull \vbox (badness 10000) has occurred while \output is active
[2113]
[2114]
[2115]
[2116]
[2117]
Underfull \hbox (badness 1371) in paragraph at lines 1666--1668
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to

[2118]
[2119]
[2120]
[2121]
[2122]
[2123]
[2124]
[2125]
[2126]
[2127]
[2128]
[2129]
Underfull \hbox (badness 2057) in paragraph at lines 2386--2388
[]\T1/ptm/m/n/10 None for []\T1/zi4/m/sl/10 chooseCRANmirror()[]\T1/ptm/m/n/10 
, this func-tion is in-voked for its side ef-fect of up-dat-ing

[2130]
Underfull \hbox (badness 2150) in paragraph at lines 2461--2468
[]\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/sl/10 citation() []\T1
/ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print

Underfull \hbox (badness 1400) in paragraph at lines 2461--2468
\T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I
f a pack-age has more

[2131]
[2132]
[2133]
Underfull \vbox (badness 3803) has occurred while \output is active
[2134]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2738 ... the Clipboard in MS Windows}{clipboard}
                                                  
[2135]
[2136]
[2137]
[2138]
[2139]
[2140]
[2141]
[2142]
[2143]
[2144]
[2145]
[2146]
[2147]
[2148]
[2149]
[2150]
[2151]
[2152]
[2153]
[2154]
[2155]
Underfull \hbox (badness 6842) in paragraph at lines 4048--4053
[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/sl/10 "libcurl" []\T1/ptm/m/n/1
0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use


[2156]
Underfull \hbox (badness 1430) in paragraph at lines 4111--4115
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the []\T1/zi4/m/sl/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the

[2157]
Underfull \hbox (badness 1184) in paragraph at lines 4182--4198
[]\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/sl/10 method = "libcurl"[]\T1/ptm
/m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS

Underfull \hbox (badness 1019) in paragraph at lines 4182--4198
\T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/sl/10 "Schannel"[]\T1/ptm/m/n/10 '. If
 it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari-

Underfull \hbox (badness 1668) in paragraph at lines 4182--4198
\T1/ptm/m/n/10 able []\T1/zi4/m/sl/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s
et to a path to a cer-tifi-cate bun-dle file, usu-ally named

[2158]
[2159]
Underfull \hbox (badness 10000) in paragraph at lines 4332--4334
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/sl/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and

[2160]
[2161]
[2162]
[2163]
[2164]
[2165]
[2166]
[2167]
[2168]
[2169]
[2170]
[2171]
[2172]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5111 ...mat Unordered and Ordered Lists}{format}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5111 ...mat Unordered and Ordered Lists}{format}
                                                  
[2173]
[2174]
[2175]
[2176]
[2177]
[2178]
[2179]
[2180]
Underfull \hbox (badness 1622) in paragraph at lines 5634--5638
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the

[2181]
[2182]
[2183]
[2184]
[2185]
[2186]
Underfull \hbox (badness 1448) in paragraph at lines 6019--6024
[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing

[2187]
[2188]
[2189]
[2190]
[2191]
[2192]
[2193]
[2194]
Underfull \hbox (badness 1371) in paragraph at lines 6567--6569
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to

[2195]
[2196]
Underfull \hbox (badness 1502) in paragraph at lines 6656--6662
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

Underfull \hbox (badness 2103) in paragraph at lines 6656--6662
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file

[2197]
[2198]
Underfull \hbox (badness 10000) in paragraph at lines 6833--6842
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,

Underfull \hbox (badness 3354) in paragraph at lines 6833--6842
\T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/sl/10 /html/packages.html\T1
/ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/sl/10 make.packages.html
[][][]()[]\T1/ptm/m/n/10 .

[2199]
Underfull \hbox (badness 2150) in paragraph at lines 6895--6898
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See

[2200]
[2201]
Underfull \hbox (badness 3118) in paragraph at lines 7034--7036
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for

[2202]
[2203]
[2204]
Underfull \hbox (badness 1325) in paragraph at lines 7213--7217
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/sl/10 available.pack
ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able

[2205]
Underfull \hbox (badness 1424) in paragraph at lines 7306--7309
[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to

[2206]
Underfull \hbox (badness 3219) in paragraph at lines 7378--7385
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/s
l/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-

Underfull \hbox (badness 5175) in paragraph at lines 7378--7385
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

Underfull \hbox (badness 1342) in paragraph at lines 7378--7385
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by

Underfull \hbox (badness 1596) in paragraph at lines 7378--7385
[][][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")[]
\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 type = "both" []\T1/ptm/m/n/10 will be silen
tly

Underfull \hbox (badness 2932) in paragraph at lines 7386--7389
[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/sl/10 type = "source" []\T1/p
tm/m/n/10 al-ways works pro-vided the pack-age con-tains no

[2207]
[2208]
Underfull \hbox (badness 1024) in paragraph at lines 7515--7518
[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/sl/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 , ] []\T1/
ptm/m/n/10 will

Underfull \hbox (badness 10000) in paragraph at lines 7548--7553
[][][]\T1/zi4/m/sl/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s
l/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,

[2209]
Underfull \hbox (badness 5133) in paragraph at lines 7607--7611
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each
 pack-age's

[2210]
[2211]
[2212]
[2213]
[2214]
[2215]
[2216]
[2217]
[2218]
[2219]
[2220]
Underfull \hbox (badness 10000) in paragraph at lines 8271--8273
[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/sl/10 methods(..)[]\T1/pt
m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class

[2221]
[2222]
[2223]
[2224]
[2225]
[2226]
[2227]
[2228] [2229]
[2230]
[2231]
[2232]
[2233]
Underfull \hbox (badness 2310) in paragraph at lines 9058--9063
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,

[2234]
[2235]
[2236]
[2237]
[2238]
[2239]
[2240]
[2241]
[2242]
Underfull \hbox (badness 1248) in paragraph at lines 9629--9633
[]\T1/zi4/m/sl/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the

[2243]
Underfull \hbox (badness 1789) in paragraph at lines 9707--9709
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the

[2244]
[2245]
[2246]
[2247]
Underfull \hbox (badness 2600) in paragraph at lines 9931--9934
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic;
 de-faults to

[2248]
[2249]
[2250]
[2251]
[2252]
[2253]
[2254]
[2255]
[2256]
Underfull \hbox (badness 1097) in paragraph at lines 10568--10571
[]\T1/ptm/m/n/10 The name []\T1/zi4/m/sl/10 "clipboard" []\T1/ptm/m/n/10 may al
so be used on Win-dows, in which case

[2257]
[2258]
Underfull \hbox (badness 3000) in paragraph at lines 10704--10709
[][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
sl/10 read.table[][][][]\T1/ptm/m/n/10 ;

[2259]
[2260]
[2261]
[2262]
[2263]
[2264]
[2265]
[2266]
[2267]
Underfull \hbox (badness 2134) in paragraph at lines 11299--11304
[][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
sl/10 write.table[][][][]\T1/ptm/m/n/10 ;

[2268]
Underfull \hbox (badness 10000) in paragraph at lines 11355--11360
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for


Underfull \hbox (badness 10000) in paragraph at lines 11355--11360
[]\T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 HKEY_C
LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/
10 ,

[2269]
[2270]
[2271]
[2272]
[2273]
[2274]
[2275]
[2276]
Underfull \hbox (badness 1824) in paragraph at lines 11853--11857
\T1/zi4/m/sl/10 / / en . wikipedia . org / w / index . php ? title = Roman _ nu
merals & oldid = 1188781837$[][]\T1/ptm/m/n/10 . Ac-cessed

[2277]
[2278]
[2279]
[2280]
[2281]
[2282]
[2283]
Underfull \hbox (badness 4060) in paragraph at lines 12299--12302
[]\T1/ptm/m/n/10 If `[]\T1/zi4/m/sl/10 --default-packages[]\T1/ptm/m/n/10 ' is 
not used, then []\T1/zi4/m/sl/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-
ment vari-able

Overfull \hbox (18.77168pt too wide) in paragraph at lines 12322--12322
 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 

[2284]
[2285]
[2286]
[2287]
Underfull \hbox (badness 2150) in paragraph at lines 12577--12579
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac
s / manual /

[2288]
[2289]
[2290]
[2291]
Underfull \hbox (badness 10000) in paragraph at lines 12797--12801
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/sl/10 stylepath []\T1/ptm/m/n/10 
is now taken from the en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 12830--12836
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a

[2292]
Underfull \hbox (badness 2762) in paragraph at lines 12845--12851
\T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin
ce 2018). Ei-ther set

[2293]
[2294]
Underfull \hbox (badness 1009) in paragraph at lines 13020--13032
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If

Underfull \hbox (badness 4779) in paragraph at lines 13060--13062
[]\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI ([]\T1/zi4/m/sl/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do
ws and

[2295]
Underfull \hbox (badness 1077) in paragraph at lines 13090--13097
\T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p
er-sonal' di-rec-tory, oth-er-wise to

[2296]
[2297]
[2298]
[2299]
[2300]
[2301]
Underfull \hbox (badness 3780) in paragraph at lines 13515--13521
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\
T1/zi4/m/sl/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via

[2302]
Underfull \hbox (badness 2635) in paragraph at lines 13533--13536
[]\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/sl/10 CRAN[]\T1/ptm/m/n/10 ' is treate
d spe-cially: the value is taken from the cur-rent set-ting of

[2303]
[2304]
[2305]
Underfull \hbox (badness 2302) in paragraph at lines 13743--13745
[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call

[2306]
[2307]
[2308]
[2309]
[2310]
Underfull \hbox (badness 4441) in paragraph at lines 14042--14047
[]\T1/ptm/m/n/10 logical; if []\T1/zi4/m/sl/10 TRUE []\T1/ptm/m/n/10 (de-fault)
, [][][]\T1/zi4/m/sl/10 deparse[][][](control = \T1/ptm/m/sl/10 control\T1/zi4/
m/sl/10 ) []\T1/ptm/m/n/10 will not have

Underfull \hbox (badness 5970) in paragraph at lines 14051--14054
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive

[2311]
[2312]
[2313]
[2314]
[2315]
[2316]
[2317]
Underfull \hbox (badness 2932) in paragraph at lines 14482--14489
[]\T1/ptm/m/n/10 If []\T1/zi4/m/sl/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa
ult) then the avail-able syn-tax ob-jects are con-sulted in turn,

Underfull \hbox (badness 1688) in paragraph at lines 14482--14489
\T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/sl/10 extension []\T1/ptm/m/n
/10 com-po-nent matches (as a reg-exp) the file name. Ob-

[2318]
[2319]
[2320]
[2321]
Underfull \hbox (badness 6510) in paragraph at lines 14794--14798
[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 is set 
to the com-mand []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men
t vari-able

[2322]
Underfull \hbox (badness 10000) in paragraph at lines 14801--14804
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / pubs . opengroup 
. org /

Underfull \hbox (badness 2245) in paragraph at lines 14801--14804
\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX

[2323]
[2324]
[2325]
[2326]
[2327]
[2328]
[2329]
[2330]
[2331]
[2332]
Underfull \hbox (badness 10000) in paragraph at lines 15474--15479
[]\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/sl/10 destdir []\T1/ptm/m/n/10 a
nd []\T1/zi4/m/sl/10 dependencies []\T1/ptm/m/n/10 to be passed to

Underfull \hbox (badness 3861) in paragraph at lines 15474--15479
[][][]\T1/zi4/m/sl/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 max_repo_cache_age [
]\T1/ptm/m/n/10 and

Underfull \hbox (badness 1052) in paragraph at lines 15480--15482
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See

Underfull \hbox (badness 10000) in paragraph at lines 15539--15542
[][][]\T1/zi4/m/sl/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/
sl/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download
.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][
][]\T1/ptm/m/n/10 ,

[2333]
[2334]
[2335]
[2336]
[2337]
[2338]
[2339]
[2340]
[2341]
[2342]
[2343]
[2344]
[2345]
[2346]
[2347]
[2348]) (./fullrefman.ind

[2349]

[2350]

[2351]

[2352]

[2353]

[2354]

[2355]

[2356]

[2357]

[2358]

[2359]

[2360]

[2361]

[2362]

[2363]

[2364]

[2365]

[2366]

[2367]

[2368]

[2369]

[2370]

[2371]

[2372]

[2373]

[2374]

[2375]

[2376]

[2377]

[2378]

[2379]

[2380]

[2381]

[2382]

[2383]

[2384]

[2385]

[2386]

[2387]

[2388]

[2389]

[2390]

[2391]

[2392]

[2393]

[2394]

[2395]

[2396]

[2397]

[2398]

[2399]

[2400]

[2401]

[2402]

[2403]

[2404]

[2405]

[2406]

Overfull \hbox (33.3567pt too wide) in paragraph at lines 10031--10033
[]\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , 


[2407]

[2408]

[2409]

[2410]

[2411]

[2412]

Overfull \hbox (20.8567pt too wide) in paragraph at lines 11421--11423
[]\T1/zi4/m/it/10 R_AVAILABLE_PACKAGES_CACHE_CONTROL_MAX_AGE 

[2413]

[2414]

[2415]

[2416]

[2417]

[2418]

[2419]

[2420]

[2421]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 13281--13283
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends 

Overfull \hbox (5.8567pt too wide) in paragraph at lines 13283--13285
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results 


Overfull \hbox (5.8567pt too wide) in paragraph at lines 13285--13287
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings 

[2422]

[2423]

[2424]

[2425]

[2426]

[2427]

[2428]

[2429]

[2430]

[2431]) (./fullrefman.aux)

LaTeX Font Warning: Some font shapes were not available, defaults substituted.

 )
(see the transcript file for additional information)
pdfTeX warning (dest): name{Rfn.write.matrix} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.knitr} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.restore} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.setup} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.ncols} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.mathjaxr} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do
es not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lmrob} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rlm} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.nlsList} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no
t exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rBind} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cBind} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no
t exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.roundX} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.base.Rdash.deprecated} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, 
replaced by a fixed one

 </tmp/texfonts/pk/ljfour/jknappen/ec/tctt1000.600pk> </tmp/texfonts/pk/ljfour/
jknappen/ec/tctt0900.600pk></usr/share/texlive/texmf-dist/fonts/type1/public/in
consolata/Inconsolata-zi4b.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/inconsolata/Inconsolata-zi4r.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cmextra/cmbsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmib10.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw
/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8
a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi8a.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/tex
mf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/urw/times/utmri8a.pfb>
Output written on fullrefman.pdf (2464 pages, 6693820 bytes).
Transcript written on fullrefman.log.
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc'
make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.3'
/usr/bin/make -k vignettes
make[1]: Entering directory '/build/reproducible-path/r-base-4.4.3'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/m4'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tools'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc/html'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc/html'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/etc'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/etc'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/share'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/share'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/src'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/scripts'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/scripts'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/scripts'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/scripts'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/include'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/include/R_ext'
make[4]: Nothing to be done for 'R'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/include/R_ext'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/include'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[5]: 'Makedeps' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[5]: 'libtre.a' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/appl'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/appl'
make[4]: 'libappl.a' is up to date.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/appl'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/appl'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/nmath'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/nmath'
make[4]: 'libnmath.a' is up to date.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/nmath'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/nmath'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/unix'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/unix'
make[4]: 'libunix.a' is up to date.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/unix'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/unix'
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2  -Wl,-z,relro -DR_HOME='"/build/reproducible-path/r-base-4.4.3"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/unix'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/unix'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
/build/reproducible-path/r-base-4.4.3/lib/libR.so is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
/build/reproducible-path/r-base-4.4.3/bin/exec/R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/internet'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/internet'
make[5]: 'internet.so' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/internet'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/internet'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/lapack'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/lapack'
make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/lapack'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/lapack'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
/build/reproducible-path/r-base-4.4.3/modules/R_X11.so is unchanged
/build/reproducible-path/r-base-4.4.3/modules/R_de.so is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/profile'
building system startup profile
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/profile'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/translations'
building package 'translations'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/translations'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/translations'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/translations'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
building package 'base'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
building package 'tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/compiler'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tools'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
building package 'utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/utils'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[9]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[10]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grDevices'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/graphics'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
building package 'stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/datasets'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/datasets'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/datasets'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
building package 'methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/methods'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
building package 'grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/grid'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
building package 'splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/splines'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/stats4'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk/src'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk/src'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/tcltk'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[6]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel/src'
make[7]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel/src'
make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel/src'
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/parallel'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library'
building/updating vignettes for package 'grid' ...
building/updating vignettes for package 'parallel' ...
building/updating vignettes for package 'utils' ...
building/updating vignettes for package 'stats' ...
processing 'reshape.Rnw'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.3'
touch make-indep-stamp
*** check ***
xvfb-run make check-all
make[1]: Entering directory '/build/reproducible-path/r-base-4.4.3'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests/Examples'
Testing examples for package 'base'
Testing examples for package 'tools'
  comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... OK
Testing examples for package 'utils'
Testing examples for package 'grDevices'
  comparing 'grDevices-Ex.Rout' to 'grDevices-Ex.Rout.save' ... OK
Testing examples for package 'graphics'
  comparing 'graphics-Ex.Rout' to 'graphics-Ex.Rout.save' ... OK
Testing examples for package 'stats'
  comparing 'stats-Ex.Rout' to 'stats-Ex.Rout.save' ... NOTE
  7529,7530c7529,7530
  < 	Fisher's Exact Test for Count Data hybrid using asym.chisq. iff
  < 	(exp=5, perc=80, Emin=1)
  ---
  > 	Fisher's Exact Test for Count Data hybrid using asym.chisq. iff (exp=5,
  > 	perc=80, Emin=1)
  14219,14220c14219
  < 	4-sample test for equality of proportions without continuity
  < 	correction
  ---
  > 	4-sample test for equality of proportions without continuity correction
  14249,14250c14248
  < 	4-sample test for equality of proportions without continuity
  < 	correction
  ---
  > 	4-sample test for equality of proportions without continuity correction
Testing examples for package 'datasets'
  comparing 'datasets-Ex.Rout' to 'datasets-Ex.Rout.save' ... OK
Testing examples for package 'methods'
Testing examples for package 'grid'
  comparing 'grid-Ex.Rout' to 'grid-Ex.Rout.save' ... OK
Testing examples for package 'splines'
  comparing 'splines-Ex.Rout' to 'splines-Ex.Rout.save' ... OK
Testing examples for package 'stats4'
  comparing 'stats4-Ex.Rout' to 'stats4-Ex.Rout.save' ... OK
Testing examples for package 'tcltk'
Testing examples for package 'compiler'
Testing examples for package 'parallel'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests/Examples'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running strict specific tests
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running code in 'eval-etc.R' ... OK
  comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ... OK
running code in 'simple-true.R' ... OK
  comparing 'simple-true.Rout' to './simple-true.Rout.save' ... OK
running code in 'arith-true.R' ... OK
  comparing 'arith-true.Rout' to './arith-true.Rout.save' ... OK
running code in 'arith.R' ... OK
  comparing 'arith.Rout' to './arith.Rout.save' ... OK
running code in 'lm-tests.R' ... OK
  comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ... OK
running code in 'ok-errors.R' ... OK
  comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ... OK
running code in 'method-dispatch.R' ... OK
  comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ... OK
running code in 'any-all.R' ... OK
  comparing 'any-all.Rout' to './any-all.Rout.save' ... OK
running code in 'structure.R' ... OK
  comparing 'structure.Rout' to './structure.Rout.save' ... OK
running code in 'd-p-q-r-tests.R' ... OK
  comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
running sloppy specific tests
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running code in 'complex.R' ... OK
  comparing 'complex.Rout' to './complex.Rout.save' ... OK
running code in 'print-tests.R' ... OK
  comparing 'print-tests.Rout' to './print-tests.Rout.save' ... OK
running code in 'lapack.R' ... OK
  comparing 'lapack.Rout' to './lapack.Rout.save' ... OK
running code in 'datasets.R' ... OK
  comparing 'datasets.Rout' to './datasets.Rout.save' ... OK
running code in 'datetime.R' ... OK
  comparing 'datetime.Rout' to './datetime.Rout.save' ...38c38
< [1] "1848-01-01 12:00:00 EST"
---
> [1] "1848-01-01 12:00:00 LMT"
40c40
< [1] -3849922800
---
> [1] -3849923038
 OK
running code in 'iec60559.R' ... OK
  comparing 'iec60559.Rout' to './iec60559.Rout.save' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
checking Sys.timezone ...
make[5]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running code in 'timezone.R' ... OK
make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running regression tests ...
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running code in 'array-subset.R' ... OK
running code in 'classes-methods.R' ... OK
running code in 'reg-tests-1a.R' ... OK
running code in 'reg-tests-1b.R' ... OK
running code in 'reg-tests-1c.R' ... OK
running code in 'reg-tests-1d.R' ... OK
running code in 'reg-tests-1e.R' ... OK
running code in 'reg-tests-2.R' ... OK
  comparing 'reg-tests-2.Rout' to './reg-tests-2.Rout.save' ... OK
running code in 'reg-examples1.R' ... OK
running code in 'reg-examples2.R' ... OK
running code in 'reg-packages.R' ... OK
running code in 'p-qbeta-strict-tst.R' ... OK
running code in 'd-p-q-r-tst-2.R' ... OK
running code in 'r-strict-tst.R' ... OK
running code in 'reg-IO.R' ... OK
  comparing 'reg-IO.Rout' to './reg-IO.Rout.save' ... OK
running code in 'reg-IO2.R' ... OK
  comparing 'reg-IO2.Rout' to './reg-IO2.Rout.save' ... OK
running code in 'reg-plot.R' ... OK
  comparing 'reg-plot.pdf' to './reg-plot.pdf.save' ...6811c6811
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 254.61 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 254.60 302.24 Tm (l) Tj 0 Tr
6814c6814
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 259.35 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 259.34 302.24 Tm (l) Tj 0 Tr
6817c6817
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 264.09 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 264.07 302.24 Tm (l) Tj 0 Tr
6820c6820
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 268.83 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 268.81 302.24 Tm (l) Tj 0 Tr
6823c6823
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 273.57 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 273.55 302.24 Tm (l) Tj 0 Tr
6826c6826
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 278.31 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 278.29 302.24 Tm (l) Tj 0 Tr
6829c6829
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 283.05 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 283.03 302.24 Tm (l) Tj 0 Tr
6832c6832
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 287.79 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 287.77 302.24 Tm (l) Tj 0 Tr
6835c6835
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 292.53 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 292.50 302.24 Tm (l) Tj 0 Tr
6838c6838
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 297.27 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 297.24 302.24 Tm (l) Tj 0 Tr
6841c6841
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 302.01 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 301.98 302.24 Tm (l) Tj 0 Tr
6844c6844
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 306.75 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 306.72 302.24 Tm (l) Tj 0 Tr
6847c6847
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 311.49 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 311.46 302.24 Tm (l) Tj 0 Tr
6850c6850
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 316.23 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 316.20 302.24 Tm (l) Tj 0 Tr
6853c6853
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 320.98 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 320.93 302.24 Tm (l) Tj 0 Tr
6856c6856
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 325.72 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 325.67 302.24 Tm (l) Tj 0 Tr
6859c6859
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 330.46 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 330.41 302.24 Tm (l) Tj 0 Tr
6862c6862
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 335.20 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 335.15 302.24 Tm (l) Tj 0 Tr
6865c6865
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 339.94 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 339.89 302.24 Tm (l) Tj 0 Tr
6868c6868
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 344.68 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 344.63 302.24 Tm (l) Tj 0 Tr
6871c6871
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 349.42 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 349.36 302.24 Tm (l) Tj 0 Tr
6874c6874
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 354.16 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 354.10 302.24 Tm (l) Tj 0 Tr
6877c6877
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 358.90 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 358.84 302.24 Tm (l) Tj 0 Tr
6880c6880
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 363.64 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 363.58 302.24 Tm (l) Tj 0 Tr
6883c6883
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 368.38 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 368.32 302.24 Tm (l) Tj 0 Tr
6886c6886
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 373.12 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 373.06 302.24 Tm (l) Tj 0 Tr
6889c6889
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 377.86 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 377.79 302.24 Tm (l) Tj 0 Tr
6892c6892
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 382.61 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 382.73 302.24 Tm (l) Tj 0 Tr
6895c6895
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 387.35 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 387.47 302.24 Tm (l) Tj 0 Tr
6898c6898
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 392.09 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 392.21 302.24 Tm (l) Tj 0 Tr
6901c6901
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 396.83 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 396.94 302.24 Tm (l) Tj 0 Tr
6904c6904
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 401.57 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 401.68 302.24 Tm (l) Tj 0 Tr
6907c6907
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 406.31 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 406.42 302.24 Tm (l) Tj 0 Tr
6910c6910
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 411.05 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 411.16 302.24 Tm (l) Tj 0 Tr
6913c6913
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 415.79 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 415.90 302.24 Tm (l) Tj 0 Tr
6916c6916
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 420.53 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 420.64 302.24 Tm (l) Tj 0 Tr
6919c6919
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 425.27 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 425.37 302.24 Tm (l) Tj 0 Tr
6922c6922
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 430.01 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 430.11 302.24 Tm (l) Tj 0 Tr
6925c6925
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 434.75 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 434.85 302.24 Tm (l) Tj 0 Tr
6928c6928
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 439.49 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 439.59 302.24 Tm (l) Tj 0 Tr
6931c6931
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 444.23 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 444.33 302.24 Tm (l) Tj 0 Tr
6934c6934
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 448.98 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 449.07 302.24 Tm (l) Tj 0 Tr
6937c6937
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 453.72 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 453.80 302.24 Tm (l) Tj 0 Tr
6940c6940
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 458.46 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 458.54 302.24 Tm (l) Tj 0 Tr
6943c6943
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 463.20 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 463.28 302.24 Tm (l) Tj 0 Tr
6946c6946
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 467.94 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 468.02 302.24 Tm (l) Tj 0 Tr
6949c6949
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 472.68 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 472.76 302.24 Tm (l) Tj 0 Tr
6952c6952
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 477.42 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 477.50 302.24 Tm (l) Tj 0 Tr
6955c6955
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 482.16 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 482.23 302.24 Tm (l) Tj 0 Tr
6958c6958
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 486.90 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 486.97 302.24 Tm (l) Tj 0 Tr
6961c6961
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 491.64 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 491.71 302.24 Tm (l) Tj 0 Tr
6964c6964
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 496.38 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 496.45 302.24 Tm (l) Tj 0 Tr
6967c6967
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 501.12 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 501.19 302.24 Tm (l) Tj 0 Tr
6970c6970
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 505.86 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 505.93 302.24 Tm (l) Tj 0 Tr
6973c6973
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 510.61 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 510.66 302.24 Tm (l) Tj 0 Tr
6976c6976
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 515.35 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 515.40 302.24 Tm (l) Tj 0 Tr
6979c6979
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 520.09 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 520.14 302.24 Tm (l) Tj 0 Tr
6982c6982
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 524.83 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 524.88 302.24 Tm (l) Tj 0 Tr
6985c6985
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 529.57 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 529.62 302.24 Tm (l) Tj 0 Tr
6988c6988
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 534.31 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 534.36 302.24 Tm (l) Tj 0 Tr
6991c6991
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 539.05 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 539.09 302.24 Tm (l) Tj 0 Tr
6994c6994
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 543.79 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 543.83 302.24 Tm (l) Tj 0 Tr
6997c6997
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 548.53 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 548.57 302.24 Tm (l) Tj 0 Tr
7000c7000
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 553.27 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 553.31 302.24 Tm (l) Tj 0 Tr
7003c7003
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 558.01 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 558.05 302.24 Tm (l) Tj 0 Tr
7006c7006
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 562.75 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 562.79 302.24 Tm (l) Tj 0 Tr
7009c7009
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 567.49 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 567.52 302.24 Tm (l) Tj 0 Tr
7012c7012
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 572.23 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 572.26 302.24 Tm (l) Tj 0 Tr
7015c7015
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 576.98 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 577.00 302.24 Tm (l) Tj 0 Tr
7018c7018
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 581.72 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 581.74 302.24 Tm (l) Tj 0 Tr
7021c7021
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 586.46 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 586.48 302.24 Tm (l) Tj 0 Tr
7024c7024
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 591.20 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 591.21 302.24 Tm (l) Tj 0 Tr
7027c7027
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 595.94 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 595.95 302.24 Tm (l) Tj 0 Tr
7030c7030
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 600.68 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 600.69 302.24 Tm (l) Tj 0 Tr
7033c7033
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 605.42 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 605.43 302.24 Tm (l) Tj 0 Tr
7036c7036
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 610.16 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 610.17 302.24 Tm (l) Tj 0 Tr
7039c7039
< /F1 1 Tf 1 Tr 7.48 0 0 7.48 614.90 302.24 Tm (l) Tj 0 Tr
---
> /F1 1 Tf 1 Tr 7.48 0 0 7.48 614.91 302.24 Tm (l) Tj 0 Tr
7100c7100
< 243.34 119.08 m 532.53 119.08 l  S
---
> 243.34 119.08 m 532.58 119.08 l  S
7102,7103c7102,7103
< 390.31 119.08 m 390.31 111.88 l  S
< 532.53 119.08 m 532.53 111.88 l  S
---
> 390.43 119.08 m 390.43 111.88 l  S
> 532.58 119.08 m 532.58 111.88 l  S
7110c7110
< /F2 1 Tf 12.00 0.00 0.00 12.00 379.73 93.16 Tm [(No) 15 (v)] TJ
---
> /F2 1 Tf 12.00 0.00 0.00 12.00 379.85 93.16 Tm [(No) 15 (v)] TJ
7113c7113
< /F2 1 Tf 12.00 0.00 0.00 12.00 521.86 93.16 Tm (Dec) Tj
---
> /F2 1 Tf 12.00 0.00 0.00 12.00 521.91 93.16 Tm (Dec) Tj
7115,7116c7115,7116
< 295.49 119.08 m 295.49 119.08 l  S
< 295.49 119.08 m 295.49 104.22 l  S
---
> 295.47 119.08 m 295.47 119.08 l  S
> 295.47 119.08 m 295.47 104.22 l  S
7118c7118
< /F2 1 Tf 12.00 0.00 0.00 12.00 277.82 78.76 Tm (Oct 12) Tj
---
> /F2 1 Tf 12.00 0.00 0.00 12.00 277.79 78.76 Tm (Oct 12) Tj
7120,7121c7120,7121
< 309.72 490.60 m 309.72 490.60 l  S
< 309.72 490.60 m 309.72 497.80 l  S
---
> 309.68 490.60 m 309.68 490.60 l  S
> 309.68 490.60 m 309.68 497.80 l  S
7123c7123
< /F2 1 Tf 12.00 0.00 0.00 12.00 292.04 507.88 Tm (Oct 15) Tj
---
> /F2 1 Tf 12.00 0.00 0.00 12.00 292.01 507.88 Tm (Oct 15) Tj
7125,7126c7125,7126
< 309.72 490.60 m 309.72 490.60 l  S
< 309.72 490.60 m 309.72 497.80 l  S
---
> 309.68 490.60 m 309.68 490.60 l  S
> 309.68 490.60 m 309.68 497.80 l  S
7128c7128
< /F2 1 Tf 12.00 0.00 0.00 12.00 292.04 522.28 Tm (Oct 15) Tj
---
> /F2 1 Tf 12.00 0.00 0.00 12.00 292.01 522.28 Tm (Oct 15) Tj
7130,7131c7130,7131
< 394.85 119.08 m 394.85 119.08 l  S
< 394.85 119.08 m 394.85 104.22 l  S
---
> 394.97 119.08 m 394.97 119.08 l  S
> 394.97 119.08 m 394.97 104.22 l  S
7133c7133
< /F2 1 Tf 12.00 0.00 0.00 12.00 359.25 78.76 Tm [(No) 15 (v 01 23:00)] TJ
---
> /F2 1 Tf 12.00 0.00 0.00 12.00 359.37 78.76 Tm [(No) 15 (v 01 23:00)] TJ
7135,7136c7135,7136
< 391.49 490.60 m 391.49 490.60 l  S
< 391.49 490.60 m 391.49 497.80 l  S
---
> 391.61 490.60 m 391.61 490.60 l  S
> 391.61 490.60 m 391.61 497.80 l  S
7138c7138
< /F2 1 Tf 12.00 0.00 0.00 12.00 355.90 507.88 Tm [(No) 15 (v 01 06:00)] TJ
---
> /F2 1 Tf 12.00 0.00 0.00 12.00 356.02 507.88 Tm [(No) 15 (v 01 06:00)] TJ
7140,7141c7140,7141
< 532.53 490.60 m 532.53 490.60 l  S
< 532.53 490.60 m 532.53 497.80 l  S
---
> 532.58 490.60 m 532.58 490.60 l  S
> 532.58 490.60 m 532.58 497.80 l  S
7143c7143
< /F2 1 Tf 12.00 0.00 0.00 12.00 513.52 507.88 Tm (Dec 01) Tj
---
> /F2 1 Tf 12.00 0.00 0.00 12.00 513.57 507.88 Tm (Dec 01) Tj
 OK
running code in 'reg-S4.R' ... OK
  comparing 'reg-S4.Rout' to './reg-S4.Rout.save' ... OK
running code in 'reg-S4-examples.R' ... OK
running code in 'reg-BLAS.R' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running tests of plotting Latin-1
  expect failure or some differences if not in a Latin-1 or UTF-8 locale
running code in 'reg-plot-latin1.R' ... FAILED
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running tests of Internet functions
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running code in 'internet.R' ... OK
  comparing 'internet.Rout' to './internet.Rout.save' ...8,10c8,153
< Warning message:
< In nsl("cran.r-project.org") :
<   nsl() was unable to resolve host 'cran.r-project.org'
---
> > 
> > ## As virtually all http sites redirect to https:, we only test the latter
> > 
> > # test do_download (and "record" #{packages}):
> > ap <- available.packages(contrib.url("https://cran.r-project.org"))
> > ## IGNORE_RDIFF_END
> > 
> > # test url connections
> > zz <- url("https://cran.r-project.org/")
> > readLines(zz)
>  [1] "<!DOCTYPE HTML PUBLIC \"-//W3C//DTD HTML 4.01 Frameset//EN\" \"http://www.w3.org/TR/html4/frameset.dtd\">"
>  [2] "<html lang=en>"                                                                                                   
>  [3] "<head>"                                                                                                   
>  [4] "<title>The Comprehensive R Archive Network</title>"                                                       
>  [5] "<META HTTP-EQUIV=\"content-type\" CONTENT=\"text/html; charset=utf-8\">"                                  
>  [6] "<link rel=\"icon\" href=\"favicon.ico\" type=\"image/x-icon\">"                                           
>  [7] "<link rel=\"shortcut icon\" href=\"favicon.ico\" type=\"image/x-icon\">"                                  
>  [8] "<link rel=\"stylesheet\" type=\"text/css\" href=\"R.css\">"                                               
>  [9] "</head>"                                                                                                  
> [10] ""                                                                                                         
> [11] "<FRAMESET cols=\"1*, 4*\" style=\"border: none;\">"                                                       
> [12] "<FRAMESET rows=\"120, 1*\">"                                                                              
> [13] "<FRAME src=\"logo.html\" name=\"logo\" frameborder=0>"                                                    
> [14] "<FRAME src=\"navbar.html\" name=\"contents\" frameborder=0>"                                              
> [15] "</FRAMESET>"                                                                                              
> [16] "<FRAME src=\"banner.shtml\" name=\"banner\" frameborder=0>"                                               
> [17] "<noframes>"                                                                                               
> [18] "<h1>The Comprehensive R Archive Network</h1>"                                                             
> [19] ""                                                                                                         
> [20] "Your browser seems not to support frames,"                                                                
> [21] "here is the <A href=\"navbar.html\">contents page</A> of CRAN."                                           
> [22] "</noframes>"                                                                                              
> [23] "</FRAMESET>"                                                                                              
> [24] "</html>"                                                                                                  
> > close(zz)
> > 
> > # and via read.table, using an r-project.org site
> > read.table("https://developer.R-project.org/inet-tests/ch11b.dat")
>      V1  V2   V3    V4 V5
> 1     1 307  930 36.58  0
> 2     2 307  940 36.73  0
> 3     3 307  950 36.93  0
> 4     4 307 1000 37.15  0
> 5     5 307 1010 37.23  0
> 6     6 307 1020 37.24  0
> 7     7 307 1030 37.24  0
> 8     8 307 1040 36.90  0
> 9     9 307 1050 36.95  0
> 10   10 307 1100 36.89  0
> 11   11 307 1110 36.95  0
> 12   12 307 1120 37.00  0
> 13   13 307 1130 36.90  0
> 14   14 307 1140 36.99  0
> 15   15 307 1150 36.99  0
> 16   16 307 1200 37.01  0
> 17   17 307 1210 37.04  0
> 18   18 307 1220 37.04  0
> 19   19 307 1230 37.14  0
> 20   20 307 1240 37.07  0
> 21   21 307 1250 36.98  0
> 22   22 307 1300 37.01  0
> 23   23 307 1310 36.97  0
> 24   24 307 1320 36.97  0
> 25   25 307 1330 37.12  0
> 26   26 307 1340 37.13  0
> 27   27 307 1350 37.14  0
> 28   28 307 1400 37.15  0
> 29   29 307 1410 37.17  0
> 30   30 307 1420 37.12  0
> 31   31 307 1430 37.12  0
> 32   32 307 1440 37.17  0
> 33   33 307 1450 37.28  0
> 34   34 307 1500 37.28  0
> 35   35 307 1510 37.44  0
> 36   36 307 1520 37.51  0
> 37   37 307 1530 37.64  0
> 38   38 307 1540 37.51  0
> 39   39 307 1550 37.98  1
> 40   40 307 1600 38.02  1
> 41   41 307 1610 38.00  1
> 42   42 307 1620 38.24  1
> 43   43 307 1630 38.10  1
> 44   44 307 1640 38.24  1
> 45   45 307 1650 38.11  1
> 46   46 307 1700 38.02  1
> 47   47 307 1710 38.11  1
> 48   48 307 1720 38.01  1
> 49   49 307 1730 37.91  1
> 50   50 307 1740 37.96  1
> 51   51 307 1750 38.03  1
> 52   52 307 1800 38.17  1
> 53   53 307 1810 38.19  1
> 54   54 307 1820 38.18  1
> 55   55 307 1830 38.15  1
> 56   56 307 1840 38.04  1
> 57   57 307 1850 37.96  1
> 58   58 307 1900 37.84  1
> 59   59 307 1910 37.83  1
> 60   60 307 1920 37.84  1
> 61   61 307 1930 37.74  1
> 62   62 307 1940 37.76  1
> 63   63 307 1950 37.76  1
> 64   64 307 2000 37.64  1
> 65   65 307 2010 37.63  1
> 66   66 307 2020 38.06  1
> 67   67 307 2030 38.19  1
> 68   68 307 2040 38.35  1
> 69   69 307 2050 38.25  1
> 70   70 307 2100 37.86  1
> 71   71 307 2110 37.95  1
> 72   72 307 2120 37.95  1
> 73   73 307 2130 37.76  1
> 74   74 307 2140 37.60  1
> 75   75 307 2150 37.89  1
> 76   76 307 2200 37.86  1
> 77   77 307 2210 37.71  1
> 78   78 307 2220 37.78  1
> 79   79 307 2230 37.82  1
> 80   80 307 2240 37.76  1
> 81   81 307 2250 37.81  1
> 82   82 307 2300 37.84  1
> 83   83 307 2310 38.01  1
> 84   84 307 2320 38.10  1
> 85   85 307 2330 38.15  1
> 86   86 307 2340 37.92  1
> 87   87 307 2350 37.64  1
> 88   88 308    0 37.70  1
> 89   89 308   10 37.46  1
> 90   90 308   20 37.41  1
> 91   91 308   30 37.46  1
> 92   92 308   40 37.56  1
> 93   93 308   50 37.55  1
> 94   94 308  100 37.75  1
> 95   95 308  110 37.76  1
> 96   96 308  120 37.73  1
> 97   97 308  130 37.77  1
> 98   98 308  140 38.01  1
> 99   99 308  150 38.04  1
> 100 100 308  200 38.07  1
> > 
> > showConnections(all = TRUE)
>   description class      mode text   isopen   can read can write
> 0 "stdin"     "terminal" "r"  "text" "opened" "yes"    "no"     
> 1 "stdout"    "terminal" "w"  "text" "opened" "no"     "yes"    
> 2 "stderr"    "terminal" "w"  "text" "opened" "no"     "yes"    
> > 
 OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running tests of date-time printing
  expect platform-specific differences
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running code in 'datetime2.R' ... OK
  comparing 'datetime2.Rout' to './datetime2.Rout.save' ...439c439
<  - attr(*, "tzone")= chr [1:3] "Africa/Monrovia" "GMT" "GMT"
---
>  - attr(*, "tzone")= chr [1:3] "Africa/Monrovia" "GMT" "   "
 OK
running code in 'datetime3.R' ... OK
running code in 'datetime4.R' ... OK
  comparing 'datetime4.Rout' to './datetime4.Rout.save' ...126c126
<  - attr(*, "tzone")= chr [1:3] "Pacific/Kiritimati" "+14" "+14"
---
>  - attr(*, "tzone")= chr [1:3] "Pacific/Kiritimati" "+14" "   "
 OK
running code in 'datetime5.R' ... OK
  comparing 'datetime5.Rout' to './datetime5.Rout.save' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running tests of documentation examples
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running code in 'R-intro.R' ... OK
  comparing 'R-intro.Rout' to './R-intro.Rout.save' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
using C compiler: 'gcc (Debian 14.2.0-19) 14.2.0'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
gcc -I"/build/reproducible-path/r-base-4.4.3/include" -DNDEBUG       -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2  -c R-exts.c -o R-exts.o
gcc -shared -L/build/reproducible-path/r-base-4.4.3/lib -Wl,-z,relro -o R-exts.so R-exts.o -L/build/reproducible-path/r-base-4.4.3/lib -lR
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running code in 'R-exts.R' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running tests of consistency of as/is.*
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
creating 'isas-tests.R'
running code in 'isas-tests.R' ... OK
  comparing 'isas-tests.Rout' to './isas-tests.Rout.save' ... OK
rm isas-tests.R
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running tests of random deviate generation
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running code in 'p-r-random-tests.R' ... OK
  comparing 'p-r-random-tests.Rout' to './p-r-random-tests.Rout.save' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running demos from base and stats
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running code in 'demos.R' ... OK
  comparing 'demos.Rout' to './demos.Rout.save' ... OK
running code in 'demos2.R' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running tests of primitives
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running code in 'primitives.R' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running regexp regression tests
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running tests of translation
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running code in 'reg-translation.R' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running more Internet tests
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running code in 'internet2.R' ... OK
running code in 'libcurl.R' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running tests of CRAN tools
  (can be slow unless mirror is local)
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running code in 'CRANtools.R' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running tests to possibly trigger segfaults
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
creating 'no-segfault.R'
running code in 'no-segfault.R' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
testing building standalone Rmath
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/nmath/standalone'
check output can be found in src/nmath/standalone/check.log
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/nmath/standalone'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running unit tests for the condition system
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running code in 'conditions.R' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running other miscellaneous devel tests
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
running code in 'misc-devel.R' ... OK
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
checking package 'base'
* using log directory '/build/reproducible-path/r-base-4.4.3/tests/base.Rcheck'
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Debian 14.2.0-19) 14.2.0
    GNU Fortran (Debian 14.2.0-19) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'base' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Unknown packages 'round', 'date', 'chron', 'nnet' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking examples ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  '/build/reproducible-path/r-base-4.4.3/tests/base.Rcheck/00check.log'
for details.

checking package 'tools'
* using log directory '/build/reproducible-path/r-base-4.4.3/tests/tools.Rcheck'
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Debian 14.2.0-19) 14.2.0
    GNU Fortran (Debian 14.2.0-19) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'tools' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Unknown package 'mathjaxr' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking R/sysdata.rda ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'QC.R'
  Running 'Rd.R'
  Running 'Rd2HTML.R'
  Running 'S3.R'
  Running 'undoc.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  '/build/reproducible-path/r-base-4.4.3/tests/tools.Rcheck/00check.log'
for details.

checking package 'utils'
* using log directory '/build/reproducible-path/r-base-4.4.3/tests/utils.Rcheck'
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Debian 14.2.0-19) 14.2.0
    GNU Fortran (Debian 14.2.0-19) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'utils' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Unknown packages 'knitr', 'nlme', 'MASS' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking R/sysdata.rda ... OK
* checking compiled code ... OK
* checking files in 'vignettes' ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'Sweave-tst.R'
  Running 'charclass.R'
  Running 'completion.R'
  Running 'relist.R'
 OK
* checking package vignettes ... OK
* checking running R code from vignettes ...
  'Sweave.Rnw'... OK
 OK
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  '/build/reproducible-path/r-base-4.4.3/tests/utils.Rcheck/00check.log'
for details.

checking package 'grDevices'
* using log directory '/build/reproducible-path/r-base-4.4.3/tests/grDevices.Rcheck'
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Debian 14.2.0-19) 14.2.0
    GNU Fortran (Debian 14.2.0-19) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'grDevices' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Unknown packages 'KernSmooth', 'MASS' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'convertColor-tests.R'
  Running 'encodings.R'
  Comparing 'encodings.Rout' to 'encodings.Rout.save' ...16c16,247
< Warning: encodings.R requires a UTF-8 locale
---
> > musl <- grepl("musl", R.version$os)
> > 
> > Sys.unsetenv("_R_CHECK_MBCS_CONVERSION_FAILURE_")
> > 
> > 
> > ## characters remapped in mbcsToSbcs
> > ## (unless libiconv remaps first which in most cases macOS >= 14 does)
> > 
> > ## One-char fixups
> > one <- c(0x2013, 0x2014, 0x2212, 0x2018, 0x2019, 0x201C, 0x201D,
> +          0x2022, 0x2605, 0x2737)
> > one <- intToUtf8(one, TRUE)
> > ## macOS transliterates the first 8, 8th to "o", quotes to grave/acute accent.
> > cat(one, sep ="  "); cat("\n")
> –  —  −  '  '  "  "  •  ★  ✷
> > 
> > ## Two-ckar fixups
> > two <- c(0x2190, 0x2192, 0x2794, 0x279C, 0x279D, 0x279E, 0x279F, 0x27a1,
> +          0x27a2, 0xFB00, 0xFB01, 0xFB02, 0x0152, 0x0153, 0x2264, 0x2265)
> > two <- intToUtf8(two, TRUE)
> > cat(two, sep ="  "); cat("\n")
> ←  →  ➔  ➜  ➝  ➞  ➟  ➡  ➢  ff  fi  fl  Œ  œ  ≤  ≥
> > two_1 <- two[1:9]    # macOS transliterates the first 2 only
> > two_2 <- two[-(1:9)] # macOS transliterates these.
> > 
> > ## Three-char fixups
> > three <- c(0xFB03, 0xFB04)
> > three <- intToUtf8(three, TRUE) # macOS transliterates these
> > cat(three, sep ="  "); cat("\n")
> ffi  ffl
> > 
> > ## Four-char fixups
> > four <- "\u2030" # permille.  macOS and R map to o/oo.
> > cat(four, sep ="  "); cat("\n")
> ‰
> > 
> > ## compress = FALSE makes this humna-readable and diff-able.
> > ## hard-code encoding ISOLatin1.enc to match reference output
> > ## (e.g. Windows default WinAnsi.enc, so CP-1252, has a special character
> > ##  for bullet, fancy double quotes, per mille and other Unicode characters
> > ##  used in the tests, while ISOLatin1.enc does not)
> > pdf("PDF-encoding.pdf", width = 5, height = 5, compress = FALSE,
> +     encoding="ISOLatin1.enc")
> > plot(1:11, 0:10, type = "n")
> > text(0.5+seq_along(one), 1, one, adj = c(0,0))
> > text(0.5+seq_along(two_1), 3, two_1, adj = c(0,0))
> > text(0.5+seq_along(two_2), 2, two_2, adj = c(0,0))
> > text(0.5+seq_along(three), 4, three, adj = c(0,0))
> > text(0.5+seq_along(four), 5, four, adj = c(0,0))
> > 
> > ## Things in packages which cannot be plotted on pdf(encoding = "latin1")
> > five <- c("\u03b1", "\u03bc", "\u2211", "\u25cf", "\u25b2", "\u221e", "\uB3C4")
> > cat(five, sep ="  "); cat("\n")
> α  μ  ∑  ●  ▲  ∞  도
> > six <- "\U0001f604" # emoji from WhatsR
> > cat(six, sep ="  "); cat("\n")
> 😄
> > # cyrillic from mapmisc
> > seven <- "\u0423\u043b\u0430\u0430\u043d\u0431\u0430\u0430\u0442\u0430\u0440"
> > cat(seven, sep ="  "); cat("\n")
> Улаанбаатар
> > ## Latin-2 example from package 'ggenealogy'
> > ## Transliterations of \u010d (c caron) differ
> > eight <- "Lubom\u00edr  Kub\u00e1\u010dek"
> > cat(eight, sep ="  "); cat("\n")
> Lubomír  Kubáček
> > 
> > text(0.5+seq_along(five), 6, five, adj = c(0,0))
> > text(1.5, 7, six, adj = c(0,0))
> > text(1.5, 8, seven, adj = c(0,0))
> > text(1.5, 9, eight, adj = c(0,0))
> > 
> > ## Now try centring
> > plot(1:11, 0:10, type = "n")
> > text(0.5+seq_along(one), 1, one)
> > text(0.5+seq_along(two_1), 3, two_1)
> > text(0.5+seq_along(two_2), 2, two_2)
> > text(0.5+seq_along(three), 4, three)
> > text(0.5+seq_along(four), 5, four)
> > text(0.5+seq_along(five), 6, five)
> > text(1.5, 7, six)
> Warning in text.default(1.5, 7, six) :
>   font metrics unknown for Unicode character U+1F604
> > text(5, 8, seven)
> > text(5, 9, eight)
> > dev.off()
> null device 
>           1 
> > 
> > ## avoid case clash with pdf-Cyrillic.pdf in encodings2.R
> > pdf("PDF-cyr.pdf", width = 5, height = 5,
> +     encoding = "KOI8-R", compress = FALSE)
> > plot(1:10, 1:10, type = "n")
> > text(1.5, 8, seven, adj = c(0,0))
> Warning in text.default(1.5, 8, seven, adj = c(0, 0)) :
>   font width unknown for character 0xf5 in encoding KOI8-R
> Warning in text.default(1.5, 8, seven, adj = c(0, 0)) :
>   font width unknown for character 0xcc in encoding KOI8-R
> Warning in text.default(1.5, 8, seven, adj = c(0, 0)) :
>   font width unknown for character 0xc1 in encoding KOI8-R
> Warning in text.default(1.5, 8, seven, adj = c(0, 0)) :
>   font width unknown for character 0xc1 in encoding KOI8-R
> Warning in text.default(1.5, 8, seven, adj = c(0, 0)) :
>   font width unknown for character 0xce in encoding KOI8-R
> Warning in text.default(1.5, 8, seven, adj = c(0, 0)) :
>   font width unknown for character 0xc2 in encoding KOI8-R
> Warning in text.default(1.5, 8, seven, adj = c(0, 0)) :
>   font width unknown for character 0xc1 in encoding KOI8-R
> Warning in text.default(1.5, 8, seven, adj = c(0, 0)) :
>   font width unknown for character 0xc1 in encoding KOI8-R
> Warning in text.default(1.5, 8, seven, adj = c(0, 0)) :
>   font width unknown for character 0xd4 in encoding KOI8-R
> Warning in text.default(1.5, 8, seven, adj = c(0, 0)) :
>   font width unknown for character 0xc1 in encoding KOI8-R
> Warning in text.default(1.5, 8, seven, adj = c(0, 0)) :
>   font width unknown for character 0xd2 in encoding KOI8-R
> > dev.off()
> null device 
>           1 
> > 
> > ##if(!musl) { ## musl's iconv does not support "latin2", only "iso88592"
> >     ## works in default Helvetica but not in NimbusSan
> >     pdf("PDF-latin2.pdf", width = 5, height = 5,
> +         encoding = "ISOLatin2", compress = FALSE)
> >     plot(1:10, 1:10, type = "n")
> >     text(1.5, 9, eight, adj = c(0,0))
> >     dev.off()
> null device 
>           1 
> > ##}
> > 
> > 
> > ## Also try postscript
> > postscript("PS-encoding.ps", width = 5, height = 5, encoding="ISOLatin1.enc")
> > plot(1:11, 0:10, type = "n")
> > text(0.5+seq_along(one), 1, one, adj = c(0,0))
> > text(0.5+seq_along(two_1), 3, two_1, adj = c(0,0))
> > text(0.5+seq_along(two_2), 2, two_2, adj = c(0,0))
> > text(0.5+seq_along(three), 4, three, adj = c(0,0))
> > text(0.5+seq_along(four), 5, four, adj = c(0,0))
> > text(0.5+seq_along(five), 6, five, adj = c(0,0))
> > text(1.5, 7, six, adj = c(0,0))
> > text(1.5, 8, seven, adj = c(0,0))
> > text(1.5, 9, eight, adj = c(0,0)) ## macOS does transliteration here, badly
> > dev.off()
> null device 
>           1 
> > 
> > ## avoid clashes with encodings tests in encodings2.R
> > postscript("PS-cyr.ps", width = 5, height = 5, encoding = "KOI8-R")
> > plot(1:10, 1:10, type = "n")
> > text(1.5, 7, seven, adj = c(0,0))
> Warning in text.default(1.5, 7, seven, adj = c(0, 0)) :
>   font width unknown for character 0xf5 in encoding KOI8-R
> Warning in text.default(1.5, 7, seven, adj = c(0, 0)) :
>   font width unknown for character 0xcc in encoding KOI8-R
> Warning in text.default(1.5, 7, seven, adj = c(0, 0)) :
>   font width unknown for character 0xc1 in encoding KOI8-R
> Warning in text.default(1.5, 7, seven, adj = c(0, 0)) :
>   font width unknown for character 0xc1 in encoding KOI8-R
> Warning in text.default(1.5, 7, seven, adj = c(0, 0)) :
>   font width unknown for character 0xce in encoding KOI8-R
> Warning in text.default(1.5, 7, seven, adj = c(0, 0)) :
>   font width unknown for character 0xc2 in encoding KOI8-R
> Warning in text.default(1.5, 7, seven, adj = c(0, 0)) :
>   font width unknown for character 0xc1 in encoding KOI8-R
> Warning in text.default(1.5, 7, seven, adj = c(0, 0)) :
>   font width unknown for character 0xc1 in encoding KOI8-R
> Warning in text.default(1.5, 7, seven, adj = c(0, 0)) :
>   font width unknown for character 0xd4 in encoding KOI8-R
> Warning in text.default(1.5, 7, seven, adj = c(0, 0)) :
>   font width unknown for character 0xc1 in encoding KOI8-R
> Warning in text.default(1.5, 7, seven, adj = c(0, 0)) :
>   font width unknown for character 0xd2 in encoding KOI8-R
> > dev.off()
> null device 
>           1 
> > 
> > ##if(!musl) {
> >     postscript("PS-latin2.ps", width = 5, height = 5, encoding = "ISOLatin2")
> >     plot(1:10, 1:10, type = "n")
> >     text(1.5, 9, eight, adj = c(0,0))
> >     dev.off()
> null device 
>           1 
> > #}
> > 
> > ## Now with --as-cran settings in recent R, only.
> > if (getRversion() < "4.4.0") q("no")
> > Sys.setenv("_R_CHECK_MBCS_CONVERSION_FAILURE_" = "TRUE")
> > ## These are only failures if the OS does not transliterate.
> > ## so all work on Alpine Linux, giving '*'
> > if(musl) q("no")
> > 
> > tf <- tempfile(fileext = ".pdf")
> > ## note that using the default on Windows (WinAnsi.enc) enables some
> > ## transliterations that would cause output differences in these tests
> > ## (alpha, micro and infinity from "five" will get transliterated by
> > ## Windows)
> > pdf(tf, width = 5, height = 5, encoding="ISOLatin1.enc")
> > plot(1:11, 0:10, type = "n")
> > ## tranliterations done in mbcsToSbcs (when they will warn) if not
> > ## done by the OS (which will be silent).
> > text(0.5+seq_along(one), 1, one, adj = c(0,0))
> > text(0.5+seq_along(two_1), 3, two_1, adj = c(0,0))
> > text(0.5+seq_along(two_2), 2, two_2, adj = c(0,0))
> > text(0.5+seq_along(three), 4, three, adj = c(0,0))
> > text(0.5+seq_along(four), 5, four, adj = c(0,0))
> > 
> > ## conversions not done in mbcsToSbcs
> > res5 <- try(text(0.5+seq_along(five), 6, five, adj = c(0,0)))
> Error in text.default(0.5 + seq_along(five), 6, five, adj = c(0, 0)) : 
>   conversion failure on 'α' in 'mbcsToSbcs': for α (U+03B1)
> > if(!inherits(res5, "try-error")) message("error check failed on 'five'")
> > res6 <- try(text(1.5, 7, six, adj = c(0,0)))
> Error in text.default(1.5, 7, six, adj = c(0, 0)) : 
>   conversion failure on '😄' in 'mbcsToSbcs': for 😄 (U+1F604)
> > if(!inherits(res6, "try-error")) message("error check failed on 'six'")
> > res7 <- try(text(1.5, 8, seven, adj = c(0,0)))
> Error in text.default(1.5, 8, seven, adj = c(0, 0)) : 
>   conversion failure on 'Улаанбаатар' in 'mbcsToSbcs': for У (U+0423)
> > if(!inherits(res7, "try-error")) message("error check failed on 'seven'")
> > ## 'eight' may or may not fail -- does on glibc, does not on macOS.
> > res8 <- try(text(1.5, 9, eight, adj = c(0,0)), silent=TRUE)
> > ## disable this check as the results are platform dependent
> > ## if(!inherits(res8, "try-error")) message("error check failed on 'eight'")
> > dev.off()
> null device 
>           1 
> > unlink(tf)
> > 
> > 
  Running 'encodings2.R'
  Comparing 'encodings2.Rout' to 'encodings2.Rout.save' ...19c19,4523
< Warning: encodings2.R requires a UTF-8 locale
---
> > 
> > pdfenc <- c("ISOLatin1", "ISOLatin2", "ISOLatin7", "ISOLatin9",
> +            "Greek", "Cyrillic", "KOI8-R", "KOI8-U",
> +            "WinAnsi", "CP1250", "CP1251", "CP1253", "CP1257")
> > 
> > enc <- c("latin1", "latin2", "iso-8859-13", "latin-9",
> +          "iso-8859-7", "iso-8859-5", "KOI8-R", "KOI8-U",
> +          "CP1252", "CP1250", "CP1251", "CP1253", "CP1257")
> > 
> > ## only use valid printable characters from the encodings and exclude those
> > ## that have a diffent UTF-8 mapping on Windows (iso-8859-7, KOI8-R)
> > ##
> > ## invalid characters are sometimes converted to unexpected UTF-8 mappings on
> > ## Windows (rather than NA)
> > valid_printable <- list(
> +     "latin1"      = c(32:126,160:255),
> +     "latin2"      = c(32:126,160:255),
> +     "iso-8859-13" = c(32:126,160:255),
> +     "latin-9"     = c(32:126,160:255),
> +     "iso-8859-7"  = c(32:126,160,163,166:169,171:173,175:209,211:254),
> +       # 161, 162 - Windows uses normal quotes, but Linux/macOS uses fancy
> +       # 164, 165, 170 - 2003 additions not supported by Windows
> +     "iso-8859-5"  = c(32:126,160:255),
> +     "KOI8-R"      = c(32:126,160:255),
> +     "KOI8-U"      = c(32:126,128:173,175:189,191:255),
> +       # 174, 190 - Windows uses characters from KOI8-RU (U+45e, U+40e),
> +       #            which differs from Unix (R+255d, U+256c)
> +     "CP1252"      = c(32:126,128,130:140,142,145:156,158:255),
> +     "CP1250"      = c(32:126,128,130,132:135,137:143,145:151,153:255),
> +     "CP1251"      = c(32:126,128:151,153:255),
> +     "CP1253"      = c(32:126,128,130:135,137,139,145:151,153,155,160:169,171:209,211:254),
> +     "CP1257"      = c(32:126,128,130,132:135,137,139,141:143,145:151,153,155,157:158,160,162:164,166:255)
> + )
> > 
> > do_one <-function(name, encoding)
> + {
> +     par(pty="s")
> +     plot(c(-1,16), c(-1,16), type="n", xlab="", ylab="", xaxs="i", yaxs="i")
> +     title(paste("Centred chars in", name))
> +     grid(17, 17, lty=1)
> +     known <- valid_printable[[encoding]]
> +     x <- rawToChar(as.raw(known), TRUE)
> +     z <- rep(NA_character_, 256)
> +     z[known] <- iconv(x, encoding, "UTF-8")
> +     ##print(z)
> + 
> +     for(i in known) {
> +         x <- i %% 16
> +         y <- i %/% 16
> +         points(x, y, pch = z[i])
> +     }
> +     par(pty="m")
> + }
> > 
> > 
> > ## Expect centring to fail for most chars in
> > ## CP1253 KOI8-* Cyrillic CP1251 Greek CP1253
> > ## as those chars are not in the Adobe afms.
> > for(i in seq_along(pdfenc)) {
> +     message("\ntesting ", pdfenc[i])
> +     ff <- paste0("pdf-", pdfenc[i], ".pdf")
> +     ## use compress = FALSE to make the output human readable
> +     ## encoding may not work (e.g. latin2 did not in musl), so use try()
> +     res <- try(pdf(ff, encoding = pdfenc[i], width = 9, height = 9,
> +                    compress = FALSE))
> +     if(!inherits(res, "try-error")) {
> +         ## and this may not work either
> +         try(do_one(pdfenc[i], enc[i]))
> +         dev.off()
> +     }
> + }
> 
> testing ISOLatin1
> 
> testing ISOLatin2
> 
> testing ISOLatin7
> 
> testing ISOLatin9
> 
> testing Greek
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xaf in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xaf in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb4 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb4 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb5 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb5 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb6 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb6 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb8 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb8 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb9 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb9 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xba in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xba in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbc in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbc in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbe in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbe in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbf in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbf in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc0 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc0 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc1 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc1 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc2 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc2 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc3 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc3 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc5 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc5 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc6 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc6 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc7 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc7 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc8 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc8 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc9 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc9 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xca in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xca in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcb in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcb in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcc in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcc in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcd in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcd in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xce in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xce in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcf in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcf in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd0 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd0 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd1 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd1 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd3 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd3 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd4 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd4 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd5 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd5 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd6 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd6 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd7 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd7 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd8 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd8 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd9 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd9 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xda in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xda in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdb in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdb in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdc in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdc in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdd in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdd in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xde in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xde in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdf in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdf in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe0 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe0 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe1 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe1 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe2 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe2 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe3 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe3 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe4 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe4 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe5 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe5 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe6 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe6 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe7 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe7 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe8 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe8 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe9 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe9 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xea in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xea in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xeb in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xeb in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xed in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xed in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xee in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xee in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xef in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xef in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf0 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf0 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf1 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf1 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf2 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf2 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf3 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf3 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf4 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf4 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf5 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf5 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf6 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf6 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf7 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf7 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf8 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf8 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf9 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf9 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfa in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfa in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfb in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfb in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfc in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfc in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfd in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfd in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfe in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfe in encoding iso-8859-7
> 
> testing Cyrillic
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa1 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa1 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa2 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa2 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa3 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa3 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa4 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa4 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa5 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa5 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa6 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa6 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa7 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa7 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa8 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa8 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa9 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa9 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xaa in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xaa in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xab in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xab in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xac in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xac in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xae in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xae in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xaf in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xaf in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb0 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb0 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb1 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb1 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb2 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb2 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb3 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb3 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb4 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb4 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb5 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb5 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb6 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb6 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb7 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb7 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb8 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb8 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb9 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb9 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xba in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xba in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbb in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbb in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbc in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbc in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbd in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbd in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbe in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbe in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbf in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbf in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc0 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc0 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc1 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc1 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc2 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc2 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc3 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc3 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc4 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc4 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc5 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc5 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc6 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc6 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc7 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc7 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc8 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc8 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc9 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc9 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xca in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xca in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcb in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcb in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcc in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcc in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcd in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcd in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xce in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xce in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcf in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcf in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd0 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd0 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd1 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd1 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd2 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd2 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd3 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd3 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd4 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd4 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd5 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd5 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd6 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd6 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd7 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd7 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd8 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd8 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd9 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd9 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xda in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xda in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdb in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdb in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdc in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdc in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdd in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdd in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xde in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xde in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdf in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdf in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe0 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe0 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe1 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe1 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe2 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe2 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe3 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe3 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe4 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe4 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe5 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe5 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe6 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe6 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe7 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe7 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe8 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe8 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe9 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe9 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xea in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xea in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xeb in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xeb in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xec in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xec in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xed in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xed in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xee in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xee in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xef in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xef in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf0 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf0 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf1 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf1 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf2 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf2 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf3 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf3 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf4 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf4 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf5 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf5 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf6 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf6 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf7 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf7 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf8 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf8 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf9 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf9 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfa in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfa in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfb in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfb in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfc in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfc in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfe in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfe in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xff in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xff in encoding iso-8859-5
> 
> testing KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa0 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa0 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa1 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa1 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa2 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa2 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa3 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa3 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa4 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa4 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa5 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa5 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa6 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa6 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa7 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa7 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa8 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa8 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa9 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa9 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xaa in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xaa in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xab in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xab in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xac in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xac in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xad in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xad in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xae in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xae in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xaf in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xaf in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb0 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb0 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb1 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb1 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb2 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb2 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb3 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb3 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb4 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb4 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb5 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb5 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb6 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb6 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb7 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb7 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb8 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb8 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb9 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb9 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xba in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xba in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbb in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbb in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbc in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbc in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbd in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbd in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbe in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbe in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc0 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc0 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc1 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc1 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc2 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc2 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc3 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc3 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc4 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc4 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc5 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc5 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc6 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc6 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc7 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc7 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc8 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc8 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc9 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc9 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xca in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xca in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcb in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcb in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcc in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcc in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcd in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcd in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xce in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xce in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcf in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcf in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd0 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd0 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd1 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd1 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd2 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd2 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd3 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd3 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd4 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd4 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd5 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd5 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd6 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd6 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd7 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd7 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd8 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd8 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd9 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd9 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xda in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xda in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdb in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdb in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdc in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdc in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdd in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdd in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xde in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xde in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdf in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdf in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe0 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe0 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe1 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe1 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe2 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe2 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe3 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe3 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe4 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe4 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe5 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe5 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe6 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe6 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe7 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe7 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe8 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe8 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe9 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe9 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xea in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xea in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xeb in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xeb in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xec in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xec in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xed in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xed in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xee in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xee in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xef in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xef in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf0 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf0 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf1 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf1 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf2 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf2 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf3 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf3 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf4 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf4 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf5 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf5 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf6 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf6 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf7 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf7 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf8 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf8 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf9 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf9 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfa in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfa in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfb in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfb in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfc in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfc in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfd in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfd in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfe in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfe in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xff in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xff in encoding KOI8-R
> 
> testing KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x80 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x80 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x81 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x81 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x82 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x82 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x83 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x83 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x84 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x84 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x85 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x85 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x86 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x86 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x87 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x87 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x88 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x88 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x89 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x89 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x8a in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x8a in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x8b in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x8b in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x8c in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x8c in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x8d in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x8d in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x8e in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x8e in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x8f in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x8f in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x90 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x90 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x91 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x91 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x92 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x92 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x93 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x93 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x94 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x94 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x95 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x95 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x96 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x96 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x97 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x97 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x98 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x98 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x99 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x99 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x9b in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x9b in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa0 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa0 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa1 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa1 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa2 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa2 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa3 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa3 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa4 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa4 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa5 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa5 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa6 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa6 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa7 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa7 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa8 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa8 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa9 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa9 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xaa in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xaa in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xab in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xab in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xac in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xac in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xad in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xad in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xaf in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xaf in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb0 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb0 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb1 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb1 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb2 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb2 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb3 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb3 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb4 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb4 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb5 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb5 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb6 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb6 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb7 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb7 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb8 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb8 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb9 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb9 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xba in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xba in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbb in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbb in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbc in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbc in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbd in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbd in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc0 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc0 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc1 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc1 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc2 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc2 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc3 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc3 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc4 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc4 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc5 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc5 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc6 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc6 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc7 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc7 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc8 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc8 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc9 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc9 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xca in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xca in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcb in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcb in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcc in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcc in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcd in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcd in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xce in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xce in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcf in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcf in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd0 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd0 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd1 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd1 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd2 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd2 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd3 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd3 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd4 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd4 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd5 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd5 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd6 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd6 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd7 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd7 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd8 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd8 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd9 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd9 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xda in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xda in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdb in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdb in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdc in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdc in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdd in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdd in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xde in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xde in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdf in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdf in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe0 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe0 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe1 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe1 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe2 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe2 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe3 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe3 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe4 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe4 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe5 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe5 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe6 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe6 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe7 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe7 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe8 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe8 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe9 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe9 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xea in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xea in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xeb in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xeb in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xec in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xec in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xed in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xed in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xee in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xee in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xef in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xef in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf0 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf0 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf1 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf1 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf2 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf2 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf3 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf3 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf4 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf4 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf5 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf5 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf6 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf6 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf7 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf7 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf8 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf8 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf9 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf9 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfa in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfa in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfb in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfb in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfc in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfc in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfd in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfd in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfe in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfe in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xff in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xff in encoding KOI8-U
> 
> testing WinAnsi
> 
> testing CP1250
> 
> testing CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x80 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x80 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x81 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x81 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x83 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x83 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x8a in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x8a in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x8c in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x8c in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x8d in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x8d in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x8e in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x8e in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x8f in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x8f in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x90 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x90 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x9a in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x9a in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x9c in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x9c in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x9d in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x9d in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x9e in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x9e in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x9f in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x9f in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa1 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa1 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa2 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa2 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa3 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa3 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa5 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa5 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa8 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa8 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xaa in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xaa in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xaf in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xaf in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb2 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb2 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb3 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb3 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb4 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb4 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb8 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb8 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb9 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb9 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xba in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xba in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbc in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbc in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbd in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbd in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbe in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbe in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbf in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbf in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc0 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc0 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc1 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc1 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc2 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc2 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc3 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc3 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc4 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc4 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc5 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc5 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc6 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc6 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc7 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc7 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc8 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc8 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc9 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc9 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xca in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xca in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcb in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcb in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcc in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcc in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcd in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcd in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xce in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xce in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcf in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcf in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd0 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd0 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd1 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd1 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd2 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd2 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd3 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd3 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd4 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd4 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd5 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd5 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd6 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd6 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd7 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd7 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd8 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd8 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd9 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd9 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xda in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xda in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdb in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdb in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdc in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdc in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdd in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdd in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xde in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xde in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdf in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdf in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe0 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe0 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe1 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe1 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe2 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe2 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe3 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe3 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe4 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe4 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe5 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe5 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe6 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe6 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe7 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe7 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe8 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe8 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe9 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe9 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xea in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xea in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xeb in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xeb in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xec in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xec in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xed in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xed in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xee in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xee in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xef in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xef in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf0 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf0 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf1 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf1 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf2 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf2 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf3 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf3 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf4 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf4 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf5 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf5 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf6 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf6 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf7 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf7 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf8 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf8 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf9 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf9 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfa in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfa in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfb in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfb in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfc in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfc in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfd in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfd in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfe in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfe in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xff in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xff in encoding CP1251
> 
> testing CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa1 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa1 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa2 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa2 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xaf in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xaf in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb4 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb4 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb8 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb8 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb9 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb9 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xba in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xba in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbc in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbc in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbe in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbe in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbf in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbf in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc0 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc0 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc1 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc1 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc2 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc2 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc3 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc3 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc5 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc5 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc6 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc6 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc7 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc7 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc8 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc8 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc9 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc9 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xca in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xca in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcb in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcb in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcc in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcc in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcd in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcd in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xce in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xce in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcf in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcf in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd0 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd0 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd1 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd1 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd3 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd3 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd4 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd4 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd5 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd5 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd6 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd6 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd7 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd7 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd8 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd8 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd9 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd9 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xda in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xda in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdb in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdb in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdc in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdc in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdd in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdd in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xde in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xde in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdf in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdf in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe0 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe0 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe1 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe1 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe2 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe2 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe3 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe3 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe4 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe4 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe5 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe5 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe6 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe6 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe7 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe7 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe8 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe8 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe9 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe9 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xea in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xea in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xeb in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xeb in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xed in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xed in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xee in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xee in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xef in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xef in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf0 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf0 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf1 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf1 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf2 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf2 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf3 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf3 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf4 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf4 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf5 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf5 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf6 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf6 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf7 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf7 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf8 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf8 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf9 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf9 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfa in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfa in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfb in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfb in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfc in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfc in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfd in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfd in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfe in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfe in encoding CP1253
> 
> testing CP1257
> > 
> > for(i in seq_along(pdfenc)) {
> +     message("\ntesting postscript in ", pdfenc[i])
> +     ff <- paste0("PS-", pdfenc[i], ".ps")
> +     ## use compress = FALSE to make the output human readable
> +     ## encoding may not work (e.g. latin2 did not in musl), so use try()
> +     res <- try(postscript(ff, encoding = pdfenc[i], width = 9, height = 9))
> +     if(!inherits(res, "try-error")) {
> +         ## and this may not work either
> +         try(do_one(pdfenc[i], enc[i]))
> +         dev.off()
> +     }
> + }
> 
> testing postscript in ISOLatin1
> 
> testing postscript in ISOLatin2
> 
> testing postscript in ISOLatin7
> 
> testing postscript in ISOLatin9
> 
> testing postscript in Greek
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xaf in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xaf in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb4 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb4 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb5 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb5 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb6 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb6 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb8 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb8 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb9 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb9 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xba in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xba in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbc in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbc in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbe in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbe in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbf in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbf in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc0 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc0 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc1 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc1 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc2 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc2 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc3 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc3 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc5 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc5 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc6 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc6 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc7 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc7 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc8 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc8 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc9 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc9 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xca in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xca in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcb in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcb in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcc in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcc in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcd in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcd in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xce in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xce in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcf in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcf in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd0 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd0 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd1 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd1 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd3 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd3 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd4 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd4 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd5 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd5 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd6 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd6 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd7 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd7 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd8 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd8 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd9 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd9 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xda in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xda in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdb in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdb in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdc in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdc in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdd in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdd in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xde in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xde in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdf in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdf in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe0 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe0 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe1 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe1 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe2 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe2 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe3 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe3 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe4 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe4 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe5 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe5 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe6 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe6 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe7 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe7 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe8 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe8 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe9 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe9 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xea in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xea in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xeb in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xeb in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xed in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xed in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xee in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xee in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xef in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xef in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf0 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf0 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf1 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf1 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf2 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf2 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf3 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf3 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf4 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf4 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf5 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf5 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf6 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf6 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf7 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf7 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf8 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf8 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf9 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf9 in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfa in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfa in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfb in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfb in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfc in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfc in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfd in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfd in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfe in encoding iso-8859-7
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfe in encoding iso-8859-7
> 
> testing postscript in Cyrillic
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa1 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa1 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa2 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa2 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa3 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa3 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa4 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa4 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa5 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa5 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa6 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa6 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa7 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa7 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa8 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa8 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa9 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa9 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xaa in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xaa in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xab in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xab in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xac in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xac in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xae in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xae in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xaf in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xaf in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb0 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb0 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb1 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb1 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb2 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb2 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb3 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb3 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb4 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb4 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb5 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb5 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb6 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb6 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb7 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb7 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb8 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb8 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb9 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb9 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xba in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xba in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbb in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbb in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbc in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbc in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbd in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbd in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbe in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbe in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbf in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbf in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc0 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc0 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc1 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc1 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc2 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc2 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc3 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc3 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc4 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc4 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc5 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc5 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc6 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc6 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc7 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc7 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc8 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc8 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc9 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc9 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xca in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xca in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcb in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcb in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcc in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcc in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcd in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcd in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xce in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xce in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcf in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcf in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd0 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd0 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd1 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd1 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd2 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd2 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd3 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd3 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd4 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd4 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd5 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd5 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd6 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd6 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd7 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd7 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd8 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd8 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd9 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd9 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xda in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xda in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdb in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdb in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdc in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdc in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdd in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdd in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xde in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xde in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdf in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdf in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe0 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe0 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe1 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe1 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe2 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe2 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe3 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe3 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe4 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe4 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe5 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe5 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe6 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe6 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe7 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe7 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe8 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe8 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe9 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe9 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xea in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xea in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xeb in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xeb in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xec in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xec in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xed in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xed in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xee in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xee in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xef in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xef in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf0 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf0 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf1 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf1 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf2 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf2 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf3 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf3 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf4 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf4 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf5 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf5 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf6 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf6 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf7 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf7 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf8 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf8 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf9 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf9 in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfa in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfa in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfb in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfb in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfc in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfc in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfe in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfe in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xff in encoding iso-8859-5
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xff in encoding iso-8859-5
> 
> testing postscript in KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa0 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa0 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa1 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa1 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa2 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa2 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa3 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa3 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa4 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa4 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa5 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa5 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa6 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa6 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa7 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa7 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa8 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa8 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa9 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa9 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xaa in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xaa in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xab in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xab in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xac in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xac in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xad in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xad in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xae in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xae in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xaf in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xaf in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb0 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb0 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb1 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb1 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb2 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb2 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb3 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb3 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb4 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb4 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb5 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb5 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb6 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb6 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb7 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb7 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb8 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb8 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb9 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb9 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xba in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xba in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbb in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbb in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbc in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbc in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbd in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbd in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbe in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbe in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc0 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc0 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc1 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc1 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc2 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc2 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc3 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc3 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc4 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc4 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc5 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc5 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc6 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc6 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc7 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc7 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc8 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc8 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc9 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc9 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xca in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xca in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcb in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcb in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcc in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcc in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcd in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcd in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xce in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xce in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcf in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcf in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd0 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd0 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd1 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd1 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd2 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd2 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd3 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd3 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd4 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd4 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd5 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd5 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd6 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd6 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd7 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd7 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd8 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd8 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd9 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd9 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xda in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xda in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdb in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdb in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdc in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdc in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdd in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdd in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xde in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xde in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdf in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdf in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe0 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe0 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe1 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe1 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe2 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe2 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe3 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe3 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe4 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe4 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe5 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe5 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe6 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe6 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe7 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe7 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe8 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe8 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe9 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe9 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xea in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xea in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xeb in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xeb in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xec in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xec in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xed in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xed in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xee in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xee in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xef in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xef in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf0 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf0 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf1 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf1 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf2 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf2 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf3 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf3 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf4 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf4 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf5 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf5 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf6 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf6 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf7 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf7 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf8 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf8 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf9 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf9 in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfa in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfa in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfb in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfb in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfc in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfc in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfd in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfd in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfe in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfe in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xff in encoding KOI8-R
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xff in encoding KOI8-R
> 
> testing postscript in KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x80 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x80 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x81 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x81 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x82 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x82 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x83 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x83 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x84 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x84 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x85 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x85 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x86 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x86 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x87 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x87 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x88 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x88 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x89 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x89 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x8a in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x8a in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x8b in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x8b in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x8c in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x8c in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x8d in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x8d in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x8e in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x8e in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x8f in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x8f in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x90 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x90 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x91 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x91 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x92 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x92 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x93 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x93 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x94 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x94 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x95 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x95 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x96 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x96 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x97 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x97 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x98 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x98 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x99 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x99 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x9b in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x9b in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa0 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa0 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa1 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa1 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa2 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa2 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa3 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa3 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa4 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa4 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa5 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa5 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa6 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa6 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa7 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa7 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa8 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa8 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa9 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa9 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xaa in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xaa in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xab in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xab in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xac in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xac in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xad in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xad in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xaf in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xaf in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb0 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb0 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb1 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb1 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb2 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb2 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb3 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb3 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb4 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb4 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb5 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb5 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb6 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb6 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb7 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb7 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb8 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb8 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb9 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb9 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xba in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xba in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbb in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbb in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbc in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbc in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbd in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbd in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc0 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc0 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc1 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc1 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc2 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc2 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc3 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc3 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc4 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc4 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc5 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc5 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc6 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc6 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc7 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc7 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc8 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc8 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc9 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc9 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xca in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xca in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcb in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcb in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcc in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcc in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcd in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcd in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xce in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xce in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcf in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcf in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd0 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd0 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd1 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd1 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd2 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd2 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd3 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd3 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd4 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd4 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd5 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd5 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd6 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd6 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd7 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd7 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd8 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd8 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd9 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd9 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xda in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xda in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdb in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdb in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdc in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdc in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdd in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdd in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xde in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xde in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdf in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdf in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe0 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe0 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe1 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe1 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe2 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe2 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe3 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe3 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe4 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe4 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe5 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe5 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe6 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe6 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe7 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe7 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe8 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe8 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe9 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe9 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xea in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xea in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xeb in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xeb in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xec in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xec in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xed in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xed in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xee in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xee in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xef in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xef in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf0 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf0 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf1 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf1 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf2 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf2 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf3 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf3 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf4 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf4 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf5 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf5 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf6 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf6 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf7 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf7 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf8 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf8 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf9 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf9 in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfa in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfa in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfb in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfb in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfc in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfc in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfd in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfd in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfe in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfe in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xff in encoding KOI8-U
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xff in encoding KOI8-U
> 
> testing postscript in WinAnsi
> 
> testing postscript in CP1250
> 
> testing postscript in CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x80 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x80 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x81 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x81 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x83 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x83 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x8a in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x8a in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x8c in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x8c in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x8d in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x8d in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x8e in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x8e in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x8f in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x8f in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x90 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x90 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x9a in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x9a in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x9c in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x9c in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x9d in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x9d in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x9e in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x9e in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0x9f in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0x9f in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa1 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa1 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa2 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa2 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa3 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa3 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa5 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa5 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa8 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa8 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xaa in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xaa in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xaf in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xaf in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb2 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb2 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb3 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb3 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb4 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb4 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb8 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb8 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb9 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb9 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xba in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xba in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbc in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbc in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbd in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbd in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbe in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbe in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbf in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbf in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc0 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc0 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc1 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc1 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc2 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc2 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc3 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc3 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc4 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc4 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc5 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc5 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc6 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc6 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc7 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc7 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc8 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc8 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc9 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc9 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xca in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xca in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcb in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcb in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcc in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcc in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcd in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcd in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xce in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xce in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcf in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcf in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd0 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd0 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd1 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd1 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd2 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd2 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd3 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd3 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd4 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd4 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd5 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd5 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd6 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd6 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd7 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd7 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd8 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd8 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd9 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd9 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xda in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xda in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdb in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdb in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdc in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdc in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdd in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdd in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xde in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xde in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdf in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdf in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe0 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe0 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe1 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe1 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe2 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe2 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe3 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe3 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe4 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe4 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe5 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe5 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe6 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe6 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe7 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe7 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe8 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe8 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe9 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe9 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xea in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xea in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xeb in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xeb in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xec in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xec in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xed in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xed in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xee in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xee in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xef in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xef in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf0 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf0 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf1 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf1 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf2 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf2 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf3 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf3 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf4 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf4 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf5 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf5 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf6 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf6 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf7 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf7 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf8 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf8 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf9 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf9 in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfa in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfa in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfb in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfb in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfc in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfc in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfd in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfd in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfe in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfe in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xff in encoding CP1251
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xff in encoding CP1251
> 
> testing postscript in CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa1 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa1 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xa2 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xa2 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xaf in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xaf in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb4 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb4 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb8 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb8 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xb9 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xb9 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xba in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xba in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbc in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbc in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbe in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbe in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xbf in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xbf in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc0 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc0 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc1 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc1 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc2 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc2 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc3 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc3 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc5 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc5 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc6 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc6 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc7 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc7 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc8 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc8 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xc9 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xc9 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xca in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xca in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcb in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcb in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcc in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcc in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcd in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcd in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xce in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xce in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xcf in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xcf in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd0 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd0 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd1 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd1 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd3 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd3 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd4 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd4 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd5 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd5 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd6 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd6 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd7 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd7 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd8 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd8 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xd9 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xd9 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xda in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xda in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdb in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdb in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdc in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdc in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdd in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdd in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xde in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xde in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xdf in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xdf in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe0 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe0 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe1 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe1 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe2 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe2 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe3 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe3 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe4 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe4 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe5 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe5 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe6 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe6 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe7 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe7 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe8 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe8 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xe9 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xe9 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xea in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xea in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xeb in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xeb in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xed in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xed in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xee in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xee in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xef in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xef in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf0 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf0 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf1 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf1 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf2 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf2 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf3 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf3 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf4 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf4 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf5 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf5 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf6 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf6 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf7 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf7 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf8 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf8 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xf9 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xf9 in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfa in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfa in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfb in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfb in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfc in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfc in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfd in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfd in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font width unknown for character 0xfe in encoding CP1253
> Warning in plot.xy(xy.coords(x, y), type = type, ...) :
>   font metrics unknown for character 0xfe in encoding CP1253
> 
> testing postscript in CP1257
> > 
> > if(!capabilities("cairo")) q("no")
> > ## Now test cairo_pdf(): do not expect any messages
> > cairo_pdf("cairo_pdf-encodings.pdf", width = 9, height = 9, onefile = TRUE)
> > for (e in enc) {
> +     message("testing ", e, " with cairo_pdf")
> +     do_one(e, e)
> + }
> testing latin1 with cairo_pdf
> testing latin2 with cairo_pdf
> testing iso-8859-13 with cairo_pdf
> testing latin-9 with cairo_pdf
> testing iso-8859-7 with cairo_pdf
> testing iso-8859-5 with cairo_pdf
> testing KOI8-R with cairo_pdf
> testing KOI8-U with cairo_pdf
> testing CP1252 with cairo_pdf
> testing CP1250 with cairo_pdf
> testing CP1251 with cairo_pdf
> testing CP1253 with cairo_pdf
> testing CP1257 with cairo_pdf
> > dev.off()
> null device 
>           1 
> > 
  Running 'encodings3.R'
  Comparing 'encodings3.Rout' to 'encodings3.Rout.save' ...19c19,74
< Warning: encodings3.R requires a UTF-8 locale
---
> > 
> > 
> > ## Two-char fixups
> > two <- c(0x2260, 0x226A, 0x226B, 0x2025, 0x203C, 0x2122)
> > two <- intToUtf8(two, TRUE)
> > cat(two, sep ="  "); cat("\n")
> ≠  ≪  ≫  ‥  ‼  ™
> > 
> > ## Three-char fixups
> > three <- c(0x2194, 0x21D4, 0x22D8, 0x22D9, 0x2026, 0x22EF)
> > three <- intToUtf8(three, TRUE)
> > cat(three, sep ="  "); cat("\n")
> ↔  ⇔  ⋘  ⋙  …  ⋯
> > ## 0x22EF is transliterated to 3x 'middle dot' in a suitable encoding
> > 
> > ## Four-char fixups
> > four <- c(0x33C2, 0x33D8)
> > four <- intToUtf8(four, TRUE)
> > cat(four, sep ="  "); cat("\n")
> ㏂  ㏘
> > 
> > ## musl will substitute * for all of these characters in pdf().
> > ## hard-code encoding ISOLatin1.enc to match reference output
> > ## (e.g.  Windows default WinAnsi.enc, so CP-1252, has a special character
> > ##  for U+2122, while ISOLatin1.enc does not)
> > pdf("Encoding3.pdf", width = 7, height = 7, compress = FALSE,
> +     encoding="ISOLatin1.enc")
> > plot(1:10, 1:10, type = "n")
> > text(0.5+seq_along(two), 2, two, adj = c(0,0))
> > text(0.5+seq_along(three), 3, three, adj = c(0,0))
> > text(0.5+seq_along(four), 4, four, adj = c(0,0))
> > 
> > ## Now try centring
> > plot(1:10, 1:10, type = "n")
> > text(0.5+seq_along(two), 2, two)
> > text(0.5+seq_along(three), 3, three)
> > text(0.5+seq_along(four), 4, four)
> > dev.off()
> null device 
>           1 
> > 
> > if(!capabilities("cairo")) q("no")
> > cairo_pdf("cairo_pdf-encodings3.pdf", width = 7, height = 7, onefile = TRUE)
> > plot(1:10, 1:10, type = "n")
> > text(0.5+seq_along(two), 2, two, adj = c(0,0))
> > text(0.5+seq_along(three), 3, three, adj = c(0,0))
> > text(0.5+seq_along(four), 4, four, adj = c(0,0))
> > plot(1:10, 1:10, type = "n")
> > text(0.5+seq_along(two), 2, two)
> > text(0.5+seq_along(three), 3, three)
> > text(0.5+seq_along(four), 4, four)
> > dev.off()
> null device 
>           1 
> > 
> > 
  Running 'grDev-tsts.R'
  Running 'palettes-tests.R'
  Running 'ps-tests.R'
  Comparing 'ps-tests.Rout' to 'ps-tests.Rout.save' ... OK
  Running 'saved-recordPlot.R'
  Running 'urw-fonts.R'
  Running 'zzcheck-encodings.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  '/build/reproducible-path/r-base-4.4.3/tests/grDevices.Rcheck/00check.log'
for details.

checking package 'graphics'
* using log directory '/build/reproducible-path/r-base-4.4.3/tests/graphics.Rcheck'
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Debian 14.2.0-19) 14.2.0
    GNU Fortran (Debian 14.2.0-19) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'graphics' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Unknown packages 'vcd', 'lattice', 'MASS', 'KernSmooth' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  '/build/reproducible-path/r-base-4.4.3/tests/graphics.Rcheck/00check.log'
for details.

checking package 'stats'
* using log directory '/build/reproducible-path/r-base-4.4.3/tests/stats.Rcheck'
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Debian 14.2.0-19) 14.2.0
    GNU Fortran (Debian 14.2.0-19) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'stats' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Unknown packages 'multcomp', 'coin', 'nlme', 'cluster', 'MASS', 'rpart', 'Matrix', 'pcaPP', 'Kendall', 'SuppDists', 'pspearman', 'robustbase', 'survival' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking usage of KIND in Fortran files ... OK
* checking files in 'vignettes' ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'NLSstClosest.R'
  Running 'arimaML.R'
  Running 'bandwidth.R'
  Comparing 'bandwidth.Rout' to 'bandwidth.Rout.save' ... OK
  Running 'cmdscale.R'
  Running 'density_chk.R'
  Running 'dpq-xtra.R'
  Running 'drop1-polr.R'
  Running 'glm-etc.R'
  Running 'glm.R'
  Comparing 'glm.Rout' to 'glm.Rout.save' ... OK
  Running 'ig_glm.R'
  Running 'ks-test.R'
  Comparing 'ks-test.Rout' to 'ks-test.Rout.save' ... OK
  Running 'nafns.R'
  Running 'nlm.R'
  Running 'nls.R'
  Comparing 'nls.Rout' to 'nls.Rout.save' ...88c88,92
< skipping tests requiring the MASS package
---
> Waiting for profiling to be done...
>      2.5%    97.5%
> a 1.00875 1.037847
> b 0.84138 0.914645
> c      NA 0.042807
273a278,286
> Waiting for profiling to be done...
>         2.5%  97.5%
> Asym 2.14936 2.5724
> xmid 1.28535 1.6966
> scal 0.97526 1.1068
> Waiting for profiling to be done...
>        2.5%  97.5%
> xmid 1.2866 1.6949
> scal 0.9757 1.1063
302a316,318
> Waiting for profiling to be done...
>    2.5%   97.5% 
> 0.68704 0.70281 
310a327,329
> Waiting for profiling to be done...
>    2.5%   97.5% 
> 0.68704 0.70281 
316a336,339
> Waiting for profiling to be done...
>      2.5%   97.5%
> a 0.49494 0.50893
> b 0.70019 0.74767
324a348,351
> Waiting for profiling to be done...
>      2.5%   97.5%
> a 0.49494 0.50893
> b 0.70019 0.74767
330a358,362
> Waiting for profiling to be done...
>          2.5%   97.5%
> a     0.35006 0.66057
> b     0.45107 0.91473
> logc -0.64627 0.40946
338a371,375
> Waiting for profiling to be done...
>          2.5%   97.5%
> a     0.35006 0.66057
> b     0.45107 0.91473
> logc -0.64627 0.40946
345a383,387
>    2.5%   97.5% 
> 0.70019 0.74767 
>          2.5%   97.5%
> b     0.45105 0.91471
> logc -0.64625 0.40933
415a458,460
>   2.5% 97.5%
> a 0.96  5.20
> b   NA  1.07
466a512,515
> Waiting for profiling to be done...
>    2.5% 97.5%
> a 0.907    NA
> b    NA 0.611
  Running 'offsets.R'
  Running 'ppr.R'
  Running 'psmirnov.R'
  Comparing 'psmirnov.Rout' to 'psmirnov.Rout.save' ... OK
  Running 'simulate.R'
  Comparing 'simulate.Rout' to 'simulate.Rout.save' ...366c366,399
< skipping tests requiring the MASS package
---
> > 
> > ## gamma fit, from example(glm)
> > clotting <- data.frame(u = c(5,10,15,20,30,40,60,80,100),
> +                        lot1 = c(118,58,42,35,27,25,21,19,18))
> > fit7 <- glm(lot1 ~ log(u), data = clotting, family = Gamma)
> > coef(summary(fit7))
>              Estimate Std. Error t value   Pr(>|t|)
> (Intercept) -0.016554 0.00092755 -17.847 4.2791e-07
> log(u)       0.015343 0.00041496  36.975 2.7512e-09
> > set.seed(1)
> > ( ys <- simulate(fit7, nsim = 3) )
>     sim_1   sim_2   sim_3
> 1 119.451 118.552 123.140
> 2  56.310  51.798  48.747
> 3  42.193  39.456  40.843
> 4  34.581  33.905  35.580
> 5  26.208  26.971  27.210
> 6  25.476  25.840  24.437
> 7  22.287  22.151  21.375
> 8  20.206  20.503  19.626
> 9  18.224  19.094  17.952
> > for(i in seq_len(3))
> +     print(coef(summary(update(fit7, ys[, i] ~ .))))
>              Estimate Std. Error t value   Pr(>|t|)
> (Intercept) -0.016008 0.00077887 -20.553 1.6197e-07
> log(u)       0.015044 0.00034611  43.465 8.9084e-10
>              Estimate Std. Error t value   Pr(>|t|)
> (Intercept) -0.015483 0.00050102 -30.903 9.5910e-09
> log(u)       0.014935 0.00021999  67.889 3.9547e-11
>              Estimate Std. Error t value   Pr(>|t|)
> (Intercept) -0.016850 0.00075120 -22.431 8.8554e-08
> log(u)       0.015569 0.00033659  46.256 5.7704e-10
> > 
> > 
  Running 'smooth.spline.R'
  Running 'table-margins.R'
  Running 'ts-tests.R'
 OK
* checking package vignettes ... OK
* checking running R code from vignettes ...
  'reshape.Rnw' using 'UTF-8'... OK
 OK
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  '/build/reproducible-path/r-base-4.4.3/tests/stats.Rcheck/00check.log'
for details.

checking package 'datasets'
* using log directory '/build/reproducible-path/r-base-4.4.3/tests/datasets.Rcheck'
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Debian 14.2.0-19) 14.2.0
    GNU Fortran (Debian 14.2.0-19) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'datasets' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking examples ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

checking package 'methods'
* using log directory '/build/reproducible-path/r-base-4.4.3/tests/methods.Rcheck'
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Debian 14.2.0-19) 14.2.0
    GNU Fortran (Debian 14.2.0-19) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'methods' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Unknown package 'Matrix' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'S3.R'
  Running 'basicRefClass.R'
  Running 'duplicateClass.R'
  Running 'envRefClass.R'
  Running 'fieldAssignments.R'
  Running 'mixinInitialize.R'
  Running 'namesAndSlots.R'
  Running 'nextWithDots.R'
  Running 'refClassExample.R'
  Running 'testConditionalIs.R'
  Running 'testGroupGeneric.R'
  Running 'testIs.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  '/build/reproducible-path/r-base-4.4.3/tests/methods.Rcheck/00check.log'
for details.

checking package 'grid'
* using log directory '/build/reproducible-path/r-base-4.4.3/tests/grid.Rcheck'
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Debian 14.2.0-19) 14.2.0
    GNU Fortran (Debian 14.2.0-19) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'grid' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Unknown package 'lattice' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking files in 'vignettes' ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'bugs.R'
  Running 'clippaths.R'
  Running 'compositing.R'
  Running 'coords.R'
  Running 'glyphs.R'
  Running 'grep.R'
  Comparing 'grep.Rout' to 'grep.Rout.save' ... OK
  Running 'groups.R'
  Running 'masks.R'
  Running 'nesting.R'
  Running 'paths.R'
  Running 'patterns.R'
  Running 'reg.R'
  Running 'testls.R'
  Comparing 'testls.Rout' to 'testls.Rout.save' ... OK
  Running 'units.R'
 OK
* checking package vignettes ... OK
* checking running R code from vignettes ...
  'displaylist.Rnw'... OK
  'frame.Rnw'... OK
  'grid.Rnw'... OK
  'grobs.Rnw'... OK
  'interactive.Rnw'... OK
  'locndimn.Rnw'... OK
  'moveline.Rnw'... OK
  'nonfinite.Rnw'... OK
  'plotexample.Rnw'... OK
  'rotated.Rnw'... OK
  'saveload.Rnw'... OK
  'sharing.Rnw'... OK
  'viewports.Rnw'... OK
 OK
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  '/build/reproducible-path/r-base-4.4.3/tests/grid.Rcheck/00check.log'
for details.

checking package 'splines'
* using log directory '/build/reproducible-path/r-base-4.4.3/tests/splines.Rcheck'
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Debian 14.2.0-19) 14.2.0
    GNU Fortran (Debian 14.2.0-19) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'splines' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Unknown package 'Matrix' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'sparse-tst.R'
  Running 'spline-tst.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  '/build/reproducible-path/r-base-4.4.3/tests/splines.Rcheck/00check.log'
for details.

checking package 'stats4'
* using log directory '/build/reproducible-path/r-base-4.4.3/tests/stats4.Rcheck'
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Debian 14.2.0-19) 14.2.0
    GNU Fortran (Debian 14.2.0-19) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'stats4' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'confint.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: OK

checking package 'tcltk'
* using log directory '/build/reproducible-path/r-base-4.4.3/tests/tcltk.Rcheck'
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Debian 14.2.0-19) 14.2.0
    GNU Fortran (Debian 14.2.0-19) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'tcltk' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

checking package 'compiler'
* using log directory '/build/reproducible-path/r-base-4.4.3/tests/compiler.Rcheck'
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Debian 14.2.0-19) 14.2.0
    GNU Fortran (Debian 14.2.0-19) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'compiler' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'assign.R'
  Running 'basics.R'
  Running 'const.R'
  Running 'curexpr.R'
  Running 'envir.R'
  Running 'jit.R'
  Running 'loop.R'
  Running 'srcref.R'
  Running 'switch.R'
  Running 'vischk.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: OK

checking package 'parallel'
* using log directory '/build/reproducible-path/r-base-4.4.3/tests/parallel.Rcheck'
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Debian 14.2.0-19) 14.2.0
    GNU Fortran (Debian 14.2.0-19) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'parallel' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking files in 'vignettes' ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'Master.R'
  Running 'RSeed.R'
 OK
* checking package vignettes ... OK
* checking running R code from vignettes ...
  'parallel.Rnw'... OK
 NONE
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
Recommended packages are not installed so cannot be tested
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.3'
touch check-stamp
*** install-arch ***
dh_testdir
dh_testroot
dh_prep -a
dh_installdirs -A
/build/reproducible-path/r-base-4.4.3/debian/r-base-core
/usr/bin/make DESTDIR=/build/reproducible-path/r-base-4.4.3/debian/r-base-core install
make[1]: Entering directory '/build/reproducible-path/r-base-4.4.3'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/m4'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/m4'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/tools'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tools'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc'
installing doc ...
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/doc
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/man/man1
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc/html'
installing doc/html ...
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/doc/html
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc/html'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
installing doc/manual ...
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/doc/manual
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/doc/manual/images
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/etc'
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/lib/R/etc
installing etc ...
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/etc'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/share'
installing share ...
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/share
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/share/R
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/share/dictionaries
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/share/encodings
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/share/java
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/share/licenses
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/share/make
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/share/Rd
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/share/Rd/macros
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/share/sh
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/share/texmf
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/share/texmf/bibtex/bib
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/share/texmf/bibtex/bst
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/share/texmf/tex/latex
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/share'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/src'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/scripts'
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/lib/R/bin
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/scripts'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/include'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/include/R_ext'
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/include/R_ext
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/include/R_ext'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/include'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra/blas'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra/blas'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra/tre'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra/tzone'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra/tzone'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra/xdr'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra/xdr'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/extra/intl'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra/intl'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/extra'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/appl'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/appl'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/nmath'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/nmath'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/unix'
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2  -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \
  -o Rscript ./Rscript.c
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/lib/pkgconfig
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/unix'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/lib/R/bin/exec
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/main'
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/lib/R/lib
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/main'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/internet'
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/lib/R/modules
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/internet'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/lapack'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/lapack'
make[4]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules/X11'
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/modules'
make[3]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/library'
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/lib/R/library
installing packages ...
  building HTML index ...
make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/library'
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/tests'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/tests'
make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.3'
(cd src/unix; 						\
	rm -vf Rscript /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/bin/Rscript;	\
	/usr/bin/make	CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT"		\
		CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT"	\
		FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -D_REENTRANT"	\
		CC=gcc				\
		CXX=g++			\
		F77=gfortran			\
		RHOME=/usr/lib/R			\
		DESTDIR=/build/reproducible-path/r-base-4.4.3/debian/r-base-core			\
		install-Rscript )
removed 'Rscript'
removed '/build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/bin/Rscript'
make[1]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/unix'
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.3/src/unix=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \
  -o Rscript ./Rscript.c
make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/unix'
#ls -ltr /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/bin/
#strings src/unix/Rscript
cp -vax src/unix/Rscript /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/bin/
'src/unix/Rscript' -> '/build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/bin/Rscript'
#ls -ltr /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/bin/
#strings /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/bin/Rscript
(cd src/nmath/standalone;				\
	/usr/bin/make DESTDIR=/build/reproducible-path/r-base-4.4.3/debian/r-base-core install )
make[1]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/nmath/standalone'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/src/include'
make[2]: 'Rmath.h' is up to date.
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/include'
/build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/include/Rmath.h is unchanged
make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.3/src/nmath/standalone'
chmod a+x	/build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/share/sh/echo.sh
rm -v	/build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/lib/R/COPYING
removed '/build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/lib/R/COPYING'
(cd /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/lib/R/; \
	ln -s ../../share/common-licenses/GPL-2 COPYING)
rm -v	/build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/doc/COPYING
removed '/build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/doc/COPYING'
(cd /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/doc; \
	ln -s ../../../share/common-licenses/GPL-2 COPYING)
(cd /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/texmf/tex/latex && 	\
    ln -s ../../../R/share/texmf R)
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-html
dh_movefiles	--sourcedir=debian/r-base-core -pr-base-html
make		prefix=/build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr			\
		rdocdir=/build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/R/doc	\
		install-pdf
make[1]: Entering directory '/build/reproducible-path/r-base-4.4.3'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
installing R manuals in PDF format ...
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.3'
make		prefix=/build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr  \
		infodir=/build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info	install-info
make[1]: Entering directory '/build/reproducible-path/r-base-4.4.3'
make[2]: Entering directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
mkdir -p -- /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info
/usr/bin/install -c -m 644 "./dir" "/build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info"
installing R info pages ...
updating '/build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/dir' ...
you need to adjust /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/dir manually
you need to adjust /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/dir manually
you need to adjust /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/dir manually
you need to adjust /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/dir manually
you need to adjust /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/dir manually
you need to adjust /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/dir manually
you need to adjust /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/dir manually
make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.3/doc/manual'
make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.3'
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-pdf
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-html
gunzip -9v /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/*.gz
/build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/R-FAQ.info.gz:	 67.4% -- replaced with /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/R-FAQ.info
/build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/R-admin.info.gz:	 68.2% -- replaced with /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/R-admin.info
/build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/R-data.info.gz:	 70.9% -- replaced with /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/R-data.info
/build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/R-exts.info-1.gz:	 66.8% -- replaced with /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/R-exts.info-1
/build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/R-exts.info-2.gz:	 67.9% -- replaced with /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/R-exts.info-2
/build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/R-exts.info-3.gz:	 76.3% -- replaced with /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/R-exts.info-3
/build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/R-exts.info.gz:	 70.7% -- replaced with /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/R-exts.info
/build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/R-intro.info.gz:	 70.4% -- replaced with /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/R-intro.info
/build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/R-ints.info.gz:	 68.7% -- replaced with /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/R-ints.info
/build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/R-lang.info.gz:	 71.9% -- replaced with /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/info/R-lang.info
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-info
rm -vf	/build/reproducible-path/r-base-4.4.3/debian/r-doc-info/usr/share/info/dir		\
	/build/reproducible-path/r-base-4.4.3/debian/r-doc-info/usr/share/info/dir.old
removed '/build/reproducible-path/r-base-4.4.3/debian/r-doc-info/usr/share/info/dir'
touch install-indep-stamp
dh_installdirs -pr-mathlib usr/include usr/lib \
				usr/share/lintian/overrides \
				usr/lib/pkgconfig
dh_movefiles	--sourcedir=debian/r-base-core -pr-mathlib
(cd /build/reproducible-path/r-base-4.4.3/debian/r-mathlib/usr/lib; \
		ls -l ; \
		mv -v  libRmath.so 	     libRmath.so.1.0.0; \
		ln -sv libRmath.so.1.0.0 libRmath.so.1; \
		ln -sv libRmath.so.1  libRmath.so)
total 2376
-rw-r--r-- 1 pbuilder1 pbuilder1 1627200 Mar 28 07:04 libRmath.a
-rwxr-xr-x 1 pbuilder1 pbuilder1  797728 Mar 28 07:04 libRmath.so
drwxr-xr-x 2 pbuilder1 pbuilder1    4096 Mar 28 07:05 pkgconfig
renamed 'libRmath.so' -> 'libRmath.so.1.0.0'
'libRmath.so.1' -> 'libRmath.so.1.0.0'
'libRmath.so' -> 'libRmath.so.1'
install -m 0644 src/include/Rmath.h			\
		/build/reproducible-path/r-base-4.4.3/debian/r-mathlib/usr/include
install -m 0644 debian/Rprofile.site /build/reproducible-path/r-base-4.4.3/debian/r-base-core/etc/R
install -m 0644 debian/Renviron.site /build/reproducible-path/r-base-4.4.3/debian/r-base-core/etc/R
(cd /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/lib/R/etc; \
	mv Makeconf repositories ldpaths ../../../../etc/R/;	\
	mv Renviron Renviron.ucf;				\
	ln -s  /etc/R/Makeconf	.;				\
	ln -s  /etc/R/Renviron	.;				\
	ln -s  /etc/R/Renviron.site .;				\
	ln -s  /etc/R/Rprofile.site .;				\
	ln -s  /etc/R/ldpaths   .;                              \
	ln -s  /etc/R/repositories .				)
dh_bash-completion
# edd 12 Jan 2016  new location
#install -m 0644 debian/R.bash-completion \
#	debian/r-base-core/usr/share/bash-completion/completions/R
(cd /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/lib/; \
	ln -sv R/lib/libR.so . )
'./libR.so' -> 'R/lib/libR.so'
(cd debian/icon-class-patch && munpack rlogo_icon.png.mpack)
rlogo_icon.png (application/octet-stream)
install -m 0644 debian/icon-class-patch/rlogo_icon.png	\
	debian/r-base-core/usr/share/icons/hicolor/48x48/apps
install -m 0644 debian/icon-class-patch/Rlogo.svg	\
	debian/r-base-core/usr/share/icons/hicolor/scalable/apps/rlogo_icon.svg
install -m 0644 debian/icon-class-patch/R.desktop	\
	debian/r-base-core/usr/share/applications
rm debian/icon-class-patch/rlogo_icon.png
touch install-arch-stamp
*** binary-arch ***
dh_testdir -a
dh_testroot -a
dh_installdocs -pr-base-core doc/NEWS.* README \
				debian/README.Atlas \
				debian/README.mathlib
dh_installdocs -pr-mathlib  doc/NEWS.* README \
				debian/README.mathlib
dh_installexamples -pr-mathlib	src/nmath/standalone/test.c
(cd /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../R/doc .)
(cd /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/library .)
install -p -m 0644  debian/r-base-core.lintian \
   /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/share/lintian/overrides/r-base-core
install -p -m 0644  debian/r-recommended.lintian \
   /build/reproducible-path/r-base-4.4.3/debian/r-recommended/usr/share/lintian/overrides/r-recommended
install -p -m 0644  debian/r-mathlib.lintian \
   /build/reproducible-path/r-base-4.4.3/debian/r-mathlib/usr/share/lintian/overrides/r-mathlib
dh_installchangelogs -a	-k doc/NEWS
dh_strip -a
dh_compress -a
dh_fixperms -a
dh_link -a
dh_makeshlibs -a
dh_installdeb -a
dh_perl -a
dh_shlibdeps -a -l /build/reproducible-path/r-base-4.4.3/debian/r-base-core/usr/lib/R/lib
dpkg-shlibdeps: warning: can't extract name and version from library name 'libtcl8.6.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libtk8.6.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libreadline8t64 from: /lib/x86_64-linux-gnu/libreadline.so.8
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libreadline8t64 to: /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libtirpc3t64 from: /lib/x86_64-linux-gnu/libtirpc.so.3
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libtirpc3t64 to: /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 from: /lib64/ld-linux-x86-64.so.2
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged
*** Getting graphics engine version from 'GraphicsEngine.h' header
echo R_GE_version | cpp -I ./src/include/ -include R_ext/GraphicsEngine.h | tail -n1 | sed 's/^/graphicsengine:Version=/' >> debian/r-base-core.substvars
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'r-base-core' in '../r-base-core_4.4.3-1_amd64.deb'.
dpkg-deb: building package 'r-base-core-dbgsym' in '../r-base-core-dbgsym_4.4.3-1_amd64.deb'.
dpkg-deb: building package 'r-mathlib-dbgsym' in '../r-mathlib-dbgsym_4.4.3-1_amd64.deb'.
dpkg-deb: building package 'r-mathlib' in '../r-mathlib_4.4.3-1_amd64.deb'.
*** binary-indep ***
dh_testdir -i
dh_testroot -i
dh_link -i
dh_installdocs -i
dh_installdocs -v -pr-doc-html
	install -p -m0644 debian/copyright debian/r-doc-html/usr/share/doc/r-doc-html/copyright
	install -m0755 -d debian/r-doc-html/usr/share/doc-base/
	install -p -m0644 debian/r-doc-html.doc-base.ints debian/r-doc-html/usr/share/doc-base/r-doc-html.r-ints
	install -p -m0644 debian/r-doc-html.doc-base.intro debian/r-doc-html/usr/share/doc-base/r-doc-html.r-intro
	install -p -m0644 debian/r-doc-html.doc-base.faq debian/r-doc-html/usr/share/doc-base/r-doc-html.r-faq
	install -p -m0644 debian/r-doc-html.doc-base.lang debian/r-doc-html/usr/share/doc-base/r-doc-html.r-language
	install -p -m0644 debian/r-doc-html.doc-base.exts debian/r-doc-html/usr/share/doc-base/r-doc-html.r-extensions
	install -p -m0644 debian/r-doc-html.doc-base.admin debian/r-doc-html/usr/share/doc-base/r-doc-html.r-admin
	install -p -m0644 debian/r-doc-html.doc-base.data debian/r-doc-html/usr/share/doc-base/r-doc-html.r-data
dh_installchangelogs -i
dh_installdirs -pr-base-dev usr/share/R/debian
install -p -m 0755  debian/r-cran.mk \
	/build/reproducible-path/r-base-4.4.3/debian/r-base-dev/usr/share/R/debian
dh_compress -i
dh_fixperms -i
dh_installdeb -i
dh_gencontrol -i
dh_md5sums -i
dh_builddeb -i
dpkg-deb: building package 'r-base' in '../r-base_4.4.3-1_all.deb'.
dpkg-deb: building package 'r-base-html' in '../r-base-html_4.4.3-1_all.deb'.
dpkg-deb: building package 'r-base-dev' in '../r-base-dev_4.4.3-1_all.deb'.
dpkg-deb: building package 'r-doc-info' in '../r-doc-info_4.4.3-1_all.deb'.
dpkg-deb: building package 'r-doc-pdf' in '../r-doc-pdf_4.4.3-1_all.deb'.
dpkg-deb: building package 'r-doc-html' in '../r-doc-html_4.4.3-1_all.deb'.
dpkg-deb: building package 'r-recommended' in '../r-recommended_4.4.3-1_all.deb'.
 dpkg-genbuildinfo --build=binary -O../r-base_4.4.3-1_amd64.buildinfo
 dpkg-genchanges --build=binary -O../r-base_4.4.3-1_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/2757434 and its subdirectories
I: Current time: Fri Mar 28 07:07:29 -12 2025
I: pbuilder-time-stamp: 1743188849
Fri Mar 28 19:07:32 UTC 2025  I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net.
Fri Mar 28 19:07:32 UTC 2025  I: Preparing to do remote build '2' on ionos5-amd64.debian.net.
Fri Mar 28 19:29:42 UTC 2025  I: Deleting $TMPDIR on ionos5-amd64.debian.net.
Fri Mar 28 19:29:42 UTC 2025  I: r-base_4.4.3-1_amd64.changes:
Format: 1.8
Date: Fri, 28 Feb 2025 06:35:07 -0600
Source: r-base
Binary: r-base r-base-core r-base-core-dbgsym r-base-dev r-base-html r-doc-html r-doc-info r-doc-pdf r-mathlib r-mathlib-dbgsym r-recommended
Architecture: amd64 all
Version: 4.4.3-1
Distribution: unstable
Urgency: medium
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Changed-By: Dirk Eddelbuettel <edd@debian.org>
Description:
 r-base     - GNU R statistical computation and graphics system
 r-base-core - GNU R core of statistical computation and graphics system
 r-base-dev - GNU R installation of auxiliary GNU R packages
 r-base-html - GNU R html docs for statistical computing system functions
 r-doc-html - GNU R html manuals for statistical computing system
 r-doc-info - GNU R info manuals statistical computing system
 r-doc-pdf  - GNU R pdf manuals for statistical computing system
 r-mathlib  - GNU R standalone mathematics library
 r-recommended - GNU R collection of recommended packages [metapackage]
Closes: 108935
Changes:
 r-base (4.4.3-1) unstable; urgency=medium
 .
   * New upstream release
 .
   * debian/r-cran.mk: No longer reference simple-patchsys.mk (Closes: #108935)
Checksums-Sha1:
 0ce21e8abd9cb6580e1a40f15fb6f624b82c5445 6904968 r-base-core-dbgsym_4.4.3-1_amd64.deb
 732b9edd258e61d6f3adee55d99360bc8a5b5d2c 28390792 r-base-core_4.4.3-1_amd64.deb
 d18f723217728fa0bbb740f1977df0fd9500b6a3 4352 r-base-dev_4.4.3-1_all.deb
 15970e141e2f23525b3b6a1407c64833d80622cf 63008 r-base-html_4.4.3-1_all.deb
 375328af2d166ce7c989af9dde8faa12e913ee51 14724 r-base_4.4.3-1_all.deb
 49bd66aa262fce2881d17ffe3acf5ceb2dc3772a 19077 r-base_4.4.3-1_amd64.buildinfo
 b0430180fba65054448b412899f33b0eaa91b2e6 583540 r-doc-html_4.4.3-1_all.deb
 cc9055136ab069a689dd3b4e0d77b463854ce9ce 641920 r-doc-info_4.4.3-1_all.deb
 0af0c479426e35ccd21632a7cb144c9239585f00 10003092 r-doc-pdf_4.4.3-1_all.deb
 4e407f50c38f1930a1a82fdde118545905f15bb1 230608 r-mathlib-dbgsym_4.4.3-1_amd64.deb
 92909bacee818513122118beadce508c4d12cb8d 2615952 r-mathlib_4.4.3-1_amd64.deb
 a62a5bb2cfd4d45548ad51896e02a672c4623bb9 2772 r-recommended_4.4.3-1_all.deb
Checksums-Sha256:
 e8bed010541b82608ee51bae3e2814c37565d3785e92f013c0e6098b48030e76 6904968 r-base-core-dbgsym_4.4.3-1_amd64.deb
 a80c728e3469d357f7c650802b40994ab563763ca640b1138876d01681530ca4 28390792 r-base-core_4.4.3-1_amd64.deb
 cfc98cce5056f0b82d672fde1c8c1138367063cde8a89185b1bfed4d299491ee 4352 r-base-dev_4.4.3-1_all.deb
 6a5a560b96c32d622f99c1b078d820b9b367e5ec83c9b2a892a15a81b0461140 63008 r-base-html_4.4.3-1_all.deb
 110ec4165dea6915592878c9c928332145bab0b1ecfaf262877643b702d5f8bc 14724 r-base_4.4.3-1_all.deb
 5b5139e4bbf6d44627c6fc7f4fe22e1fddd31beb754b3efbfb2ef6707b695188 19077 r-base_4.4.3-1_amd64.buildinfo
 02c7b014be80af30124e4eca563d8a64890a7b549bd2c72efcc4260c5fdf03d3 583540 r-doc-html_4.4.3-1_all.deb
 2e194cf69447157933179a1ae7afd584039455c5d1ddacf3cb1041f7c7c6fa2d 641920 r-doc-info_4.4.3-1_all.deb
 cc4caa20367cc7fd1b8ee55a62aec1a040baf6a9f073a3e9412339c5b980da6b 10003092 r-doc-pdf_4.4.3-1_all.deb
 f2ce782fec9f60516ca12fc4e5e8174353e076306948ad5092aa8abd850b7eda 230608 r-mathlib-dbgsym_4.4.3-1_amd64.deb
 e7d977a67bce4b32c37ac8d23d8716a59e01b4fdb0ca846f5484b8654f3f4a15 2615952 r-mathlib_4.4.3-1_amd64.deb
 d1f254663f367d72abb67a17c58d39e5006e9be34553cc954df0f56fc2208778 2772 r-recommended_4.4.3-1_all.deb
Files:
 7b6aeccc6c06dcca6c38390f39c7d3d2 6904968 debug optional r-base-core-dbgsym_4.4.3-1_amd64.deb
 f042eb6c0b1d6a3f0b63b61f1c8b8391 28390792 gnu-r optional r-base-core_4.4.3-1_amd64.deb
 9cf8484f0afb1ee83c90c862b9c47433 4352 gnu-r optional r-base-dev_4.4.3-1_all.deb
 c65bf9db423110a1e12019951bd90a81 63008 doc optional r-base-html_4.4.3-1_all.deb
 dc68d153186669c0e74b60ad40eca323 14724 gnu-r optional r-base_4.4.3-1_all.deb
 c80a7be0eb41917b17bfbac7083983cc 19077 gnu-r optional r-base_4.4.3-1_amd64.buildinfo
 8c0baaca8df904a9099a4f06ad5fbd90 583540 doc optional r-doc-html_4.4.3-1_all.deb
 5a18d2ddb662d599ab938e2e81f2d1b2 641920 doc optional r-doc-info_4.4.3-1_all.deb
 53f2f8e1c9644b2b05d04fba92f665ee 10003092 doc optional r-doc-pdf_4.4.3-1_all.deb
 7de590e6e347af93280da85d80d304ac 230608 debug optional r-mathlib-dbgsym_4.4.3-1_amd64.deb
 061a66b6002ec7d4c06c3af8903b1f74 2615952 gnu-r optional r-mathlib_4.4.3-1_amd64.deb
 1dfe5c39b00353b8a8b0c2be4e045d29 2772 gnu-r optional r-recommended_4.4.3-1_all.deb
Fri Mar 28 19:29:43 UTC 2025  I: diffoscope 291 will be used to compare the two builds:
Running as unit: rb-diffoscope-amd64_13-36366.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.NN3BqmAA/r-base_4.4.3-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.NN3BqmAA/r-base_4.4.3-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.NN3BqmAA/r-base_4.4.3-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.NN3BqmAA/b1/r-base_4.4.3-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.NN3BqmAA/b2/r-base_4.4.3-1_amd64.changes

## close_archive (total time: 0.000s)
       0.000s     36 calls    diffoscope.comparators.gzip.GzipContainer
       0.000s     10 calls    diffoscope.comparators.xz.XzContainer
       0.000s      8 calls    diffoscope.comparators.tar.TarContainer
       0.000s      2 calls    diffoscope.comparators.deb.DebContainer
       0.000s      2 calls    diffoscope.comparators.deb.DebTarContainer

## command (total time: 18.275s)
       6.862s     48 calls    diff
       5.784s     33 calls    pdftotext
       2.485s     12 calls    xz
       1.792s     10 calls    xxd
       1.226s    198 calls    Rscript
       0.054s     36 calls    gzip
       0.033s      7 calls    cmp
       0.033s      7 calls    cmp (external)
       0.005s     93 calls    cmp (internal)

## compare_files (cumulative) (total time: 907.006s)
     181.087s      1 call     abc.DotChangesFile
     180.942s      2 calls    abc.DebFile
     180.696s      4 calls    abc.XzFile
     178.052s      2 calls    abc.DebDataTarFile
     157.738s      3 calls    abc.PdfFile
      10.394s     18 calls    abc.GzipFile
      10.226s     16 calls    abc.RdsFile
       7.287s      2 calls    abc.RdbFile
       0.436s     17 calls    abc.TextFile
       0.110s      2 calls    abc.TarFile
       0.039s      2 calls    abc.Md5sumsFile

## container_extract (total time: 3.485s)
       2.486s     12 calls    diffoscope.comparators.xz.XzContainer
       0.787s   2482 calls    diffoscope.comparators.deb.DebTarContainer
       0.147s     16 calls    diffoscope.comparators.deb.DebContainer
       0.055s     36 calls    diffoscope.comparators.gzip.GzipContainer
       0.009s     24 calls    diffoscope.comparators.tar.TarContainer

## diff (total time: 0.478s)
       0.478s    295 calls    linediff

## has_same_content_as (total time: 0.045s)
       0.024s     11 calls    abc.DebFile
       0.011s      2 calls    abc.DebDataTarFile
       0.003s     32 calls    abc.TextFile
       0.002s     21 calls    diffoscope.comparators.utils.libarchive.LibarchiveSymlink
       0.002s     16 calls    abc.RdsFile
       0.001s     18 calls    abc.GzipFile
       0.000s      4 calls    abc.Md5sumsFile
       0.000s      4 calls    abc.XzFile
       0.000s      2 calls    abc.TarFile
       0.000s      3 calls    abc.PdfFile
       0.000s      1 call     diffoscope.comparators.binary.FilesystemFile
       0.000s      2 calls    abc.RdbFile
       0.000s      1 call     abc.DotChangesFile

## main (total time: 184.869s)
     184.838s      2 calls    outputs
       0.032s      1 call     cleanup

## open_archive (total time: 0.000s)
       0.000s     36 calls    diffoscope.comparators.gzip.GzipContainer
       0.000s     12 calls    diffoscope.comparators.xz.XzContainer
       0.000s      8 calls    diffoscope.comparators.tar.TarContainer
       0.000s      4 calls    diffoscope.comparators.deb.DebContainer
       0.000s      4 calls    diffoscope.comparators.deb.DebTarContainer

## output (total time: 3.007s)
       2.803s      1 call     html
       0.129s      1 call     text
       0.076s      1 call     json

## recognizes (total time: 1.060s)
       0.441s     12 calls    diffoscope.comparators.binary.FilesystemFile
       0.395s   4324 calls    diffoscope.comparators.utils.libarchive.LibarchiveMember
       0.119s   2408 calls    diffoscope.comparators.utils.archive.ArchiveMember
       0.105s    594 calls    diffoscope.comparators.debian.DebControlMember

## specialize (total time: 1.376s)
       1.376s    116 calls    specialize
Finished with result: success
Main processes terminated with: code=exited/status=1
Service runtime: 3min 5.925s
CPU time consumed: 3min 10.137s
Fri Mar 28 19:32:50 UTC 2025  W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate.
Fri Mar 28 19:32:50 UTC 2025  E: r-base failed to build reproducibly in unstable on amd64.
Fri Mar 28 19:32:57 UTC 2025  I: Submitting .buildinfo files to external archives:
Fri Mar 28 19:32:57 UTC 2025  I: Submitting 20K	b1/r-base_4.4.3-1_amd64.buildinfo.asc
Fri Mar 28 19:32:58 UTC 2025  I: Submitting 20K	b2/r-base_4.4.3-1_amd64.buildinfo.asc
Fri Mar 28 19:32:59 UTC 2025  I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Fri Mar 28 19:32:59 UTC 2025  I: Done submitting .buildinfo files.
Fri Mar 28 19:32:59 UTC 2025  I: Removing signed r-base_4.4.3-1_amd64.buildinfo.asc files:
removed './b1/r-base_4.4.3-1_amd64.buildinfo.asc'
removed './b2/r-base_4.4.3-1_amd64.buildinfo.asc'