Sun Oct 27 03:23:55 UTC 2024 I: starting to build q2-types/unstable/amd64 on jenkins on '2024-10-27 03:23' Sun Oct 27 03:23:55 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_14/23240/console.log Sun Oct 27 03:23:55 UTC 2024 I: Downloading source for unstable/q2-types=2024.5.0-1 --2024-10-27 03:23:55-- http://deb.debian.org/debian/pool/main/q/q2-types/q2-types_2024.5.0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2244 (2.2K) [text/prs.lines.tag] Saving to: ‘q2-types_2024.5.0-1.dsc’ 0K .. 100% 290M=0s 2024-10-27 03:23:55 (290 MB/s) - ‘q2-types_2024.5.0-1.dsc’ saved [2244/2244] Sun Oct 27 03:23:55 UTC 2024 I: q2-types_2024.5.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: q2-types Binary: q2-types Architecture: all Version: 2024.5.0-1 Maintainer: Debian Med Packaging Team Uploaders: Liubov Chuprikova , Étienne Mollier , Steffen Moeller Homepage: https://qiime2.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/q2-types Vcs-Git: https://salsa.debian.org/med-team/q2-types.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-pytest-cov Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, python3-pytest-cov, python3-biom-format, python3-skbio, python3-ijson, python3-h5py, qiime (>= 2024.5) Package-List: q2-types deb science optional arch=all Checksums-Sha1: 5ed9636f50db5b60318dcce23dfa7dcf0cab4558 15553161 q2-types_2024.5.0.orig.tar.gz 7fe0c48ff9321b17c5ff8041d7c601c99b6d58be 7512 q2-types_2024.5.0-1.debian.tar.xz Checksums-Sha256: 4547919358a6ecd281e9537b3e77fd5ce865ed15a3ee5d1c81ff616f6b60e51c 15553161 q2-types_2024.5.0.orig.tar.gz 90d65a176c0a7b925852c4b9fb09cceadbac85ccab5d68c4f7ca8313e39da142 7512 q2-types_2024.5.0-1.debian.tar.xz Files: 352b47b2c807227fb3c75519ea53482e 15553161 q2-types_2024.5.0.orig.tar.gz dacc20941be30711de3a4e647adefd3d 7512 q2-types_2024.5.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmZ6G8QACgkQPCZ2P2xn 5uIPxA/9Gz4ZwyK20CznTO3PyolPcLpvaPz00qzxnkI2kAHl8Zn3JxA+SMHof1h/ LrJ5uZp0E7f1a90zpiBfPwMi4BXflStj4/pG2cbJ7lY7VNl76rRfT6/Kw7TBByL0 K34GYg8DCZcI0xK4Eo3WkDoEJzTK1i2bg5oWc2tU+HwPld4NuJWg/nGkGhFD67vr F0IVuCH/fyYmtLguiByVBtn6nw3TmqUgbrX905+ns/klLQFBKChfZ/dW/oOTIZfJ FF3R5NjSv5Gpfvm299K9k/1rMunEE89wkjixwV+YkJLnrmRW+4XyjpL44xrUE6MQ TdWTewv28hpEVlrZFuJNeYqCPOKUfZG1BHCxKYjznm3Q+Ldmescob4YWde+a4QI1 lwMn9Cnyo/A7lFZ22vO2xLl/evHSOS8Mef+Pa7vUeKy67nMYTvQLzQjutiGFmSig MXuF+cPLK1U+520goYMU86OqHS8vH/46QGXz6a7fkAZVmHmFJuIGfLW4ArwNSLlN 5jccKImS1UPNhp4DEfMC/hNWOotwg/CDYPCP63wbamYP5XkuVIVQdywlQHxELO6A 620QPNXjhTbXsVSs5vKWBsQxiamQstlaEIEMyLfCe4r8tyLM6/55KBobihLVBvMG ivIcdfTAuwaSOFRqEpk4JORaisPwzauOlNQhgt5+IzciP35yVOM= =11aU -----END PGP SIGNATURE----- Sun Oct 27 03:23:55 UTC 2024 I: Checking whether the package is not for us Sun Oct 27 03:23:55 UTC 2024 I: Starting 1st build on remote node ionos5-amd64.debian.net. Sun Oct 27 03:23:55 UTC 2024 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Sun Oct 27 03:26:56 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Nov 28 21:47:05 -12 2025 I: pbuilder-time-stamp: 1764409625 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [q2-types_2024.5.0-1.dsc] I: copying [./q2-types_2024.5.0.orig.tar.gz] I: copying [./q2-types_2024.5.0-1.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Jun 25 01:22:12 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./q2-types_2024.5.0-1.dsc: no acceptable signature found dpkg-source: info: extracting q2-types in q2-types-2024.5.0 dpkg-source: info: unpacking q2-types_2024.5.0.orig.tar.gz dpkg-source: info: unpacking q2-types_2024.5.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying py.test-3.patch dpkg-source: info: applying configparser.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3191147/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='c95a0da5b3084a5d9dfc18119693f44c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3191147' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UNeH8sNH/pbuilderrc_4ewq --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UNeH8sNH/b1 --logfile b1/build.log q2-types_2024.5.0-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3191147/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, python3-pytest-cov, python3-biom-format, python3-skbio, python3-ijson, python3-h5py, qiime (>= 2024.5) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19947 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however: Package python3-pytest-cov is not installed. pbuilder-satisfydepends-dummy depends on python3-biom-format; however: Package python3-biom-format is not installed. pbuilder-satisfydepends-dummy depends on python3-skbio; however: Package python3-skbio is not installed. pbuilder-satisfydepends-dummy depends on python3-ijson; however: Package python3-ijson is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on qiime (>= 2024.5); however: Package qiime is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-glyphicons-halflings{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} javascript-common{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libhdf5-103-1t64{a} libhdf5-hl-100t64{a} libicu72{a} libjs-bootstrap{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-popper.js{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} libldap-2.5-0{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnorm1t64{a} libnsl2{a} libpgm-5.3-0t64{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsodium23{a} libssh2-1t64{a} libssw0{a} libsz2{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} libxslt1.1{a} libyajl2{a} libyaml-0-2{a} libzmq5{a} m4{a} man-db{a} media-types{a} netbase{a} node-fortawesome-fontawesome-free{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-bcrypt{a} python3-bibtexparser{a} python3-biom-format{a} python3-blinker{a} python3-certifi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-coverage{a} python3-cryptography{a} python3-dateutil{a} python3-decorator{a} python3-dill{a} python3-filelock{a} python3-flask{a} python3-flask-sqlalchemy{a} python3-flufl.lock{a} python3-globus-sdk{a} python3-greenlet{a} python3-h5py{a} python3-h5py-serial{a} python3-hdmedians{a} python3-idna{a} python3-ijson{a} python3-inflect{a} python3-iniconfig{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-jwt{a} python3-lxml{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-natsort{a} python3-networkx{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-parsl{a} python3-patsy{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-psutil{a} python3-public{a} python3-py{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-cov{a} python3-requests{a} python3-scipy{a} python3-setproctitle{a} python3-setuptools{a} python3-six{a} python3-skbio{a} python3-sqlalchemy{a} python3-statsmodels{a} python3-statsmodels-lib{a} python3-tblib{a} python3-tomlkit{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-tzlocal{a} python3-urllib3{a} python3-werkzeug{a} python3-yaml{a} python3-zipp{a} python3-zmq{a} python3.12{a} python3.12-minimal{a} qiime{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx node-jquery publicsuffix python3-asgiref python3-babel python3-bottleneck python3-bs4 python3-cssselect python3-cvxopt python3-dotenv python3-gdal python3-html5lib python3-joblib python3-matplotlib python3-numba python3-numexpr python3-odf python3-openpyxl python3-openssl python3-pil python3-pydot python3-pygments python3-pygraphviz python3-pyinotify python3-simplejson python3-sqlalchemy-ext python3-tables q2-cutadapt q2-demux q2-feature-classifier q2-feature-table q2-metadata q2-quality-filter q2-types q2cli q2templates r-cran-plotly wget 0 packages upgraded, 168 newly installed, 0 to remove and 0 not upgraded. Need to get 98.9 MB of archives. After unpacking 462 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.7-1 [814 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.3-1 [105 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.7-1 [2162 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-3 [255 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 14 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b2 [40.3 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.7-1 [1965 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.7-1 [671 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 24 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.2-1 [1381 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-9 [97.2 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 62 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.20.2-1 [10.3 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.2.0-1 [731 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20241024 [109 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 javascript-common all 11+nmu1 [6260 B] Get: 70 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b4 [300 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.63.0-1 [74.8 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.10.1-2 [352 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-7 [837 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get: 83 http://deb.debian.org/debian unstable/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4 [1253 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4 [63.9 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B] Get: 87 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-metadata all 12-4 [6532 B] Get: 88 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [184 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 liblzf1 amd64 3.6-4+b1 [10.4 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1 [221 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1 [161 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libsodium23 amd64 1.0.18-1+b1 [163 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libssw0 amd64 1.1-15 [20.9 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.35-1.1 [232 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libyajl2 amd64 2.1.0-5+b1 [23.3 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-1+b1 [52.6 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libzmq5 amd64 4.3.5-1+b2 [281 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 node-fortawesome-fontawesome-free all 6.4.2+ds1-1 [1472 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.12.6-1 [1040 B] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3-bcrypt amd64 4.2.0-2 [210 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-bibtexparser all 2.0.0b5+really1.4.1-1 [34.2 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:1.26.4+ds-11 [4236 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-h5py-serial amd64 3.11.0-7 [1018 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 python3-h5py all 3.11.0-7 [14.8 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 python3-click all 8.1.7-2 [94.3 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-4 [4388 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 python3-pandas all 2.2.3+dfsg-4 [3096 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.13.1-5 [16.7 MB] Get: 118 http://deb.debian.org/debian unstable/main amd64 python3-biom-format amd64 2.1.16-1+b1 [145 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 python3-blinker all 1.8.2-1 [13.1 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 121 http://deb.debian.org/debian unstable/main amd64 python3-cffi-backend amd64 1.17.1-1 [87.1 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.0-1 [118 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 python3-coverage amd64 7.6.0+dfsg1-2 [175 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 python3-cryptography amd64 43.0.0-1 [935 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 python3-dill all 0.3.9-1 [83.5 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 python3-filelock all 3.16.1-1 [12.6 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 python3-itsdangerous all 2.2.0-1 [18.0 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 2.1.5-1+b1 [13.6 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 python3-werkzeug all 3.0.4-1 [207 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 python3-flask all 3.0.3-1 [104 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 python3-greenlet amd64 3.1.0-1 [165 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 python3-sqlalchemy all 2.0.32+ds1-1 [1196 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 python3-flask-sqlalchemy all 3.1.1-2 [35.9 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 python3-psutil amd64 5.9.8-2 [225 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 python3-public all 4.1.0-2 [7032 B] Get: 138 http://deb.debian.org/debian unstable/main amd64 python3-flufl.lock all 8.1.0-2 [15.6 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 python3-jwt all 2.7.0-1 [29.7 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.8-2 [41.6 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.0.7-2 [111 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 python3-globus-sdk all 3.46.0-1 [293 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 python3-hdmedians amd64 0.14.2-5.1+b1 [118 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 python3-ijson amd64 3.3.0-1+b1 [40.7 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 147 http://deb.debian.org/debian unstable/main amd64 python3-lxml amd64 5.3.0-1 [1251 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 python3-natsort all 8.0.2-2 [39.0 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 python3-networkx all 3.2.1-4 [14.2 MB] Get: 150 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.1-1 [45.8 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 python3-setproctitle amd64 1.3.3-1+b3 [18.3 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 python3-tblib all 3.0.0-5 [13.7 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 python3-py all 1.11.0-2 [88.7 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 python3-zmq amd64 24.0.1-5+b2 [269 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 python3-parsl all 2024.10.14+ds-1 [281 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 python3-six all 1.16.0-7 [16.4 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 python3-patsy all 0.5.6-1 [173 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.3-1 [249 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 python3-pytest-cov all 5.0.0-1 [26.8 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 python3-statsmodels-lib amd64 0.14.4+dfsg-1 [1536 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 python3-statsmodels all 0.14.4+dfsg-1 [4825 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 python3-skbio amd64 0.6.2-3 [1386 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 python3-tomlkit all 0.13.2-1 [42.7 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 python3-tzlocal all 5.2-1.1 [23.7 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 python3-yaml amd64 6.0.2-1 [134 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 qiime all 2024.5.0-1 [304 kB] Fetched 98.9 MB in 13s (7567 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libjs-jquery. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19947 files and directories currently installed.) Preparing to unpack .../libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-jquery-hotkeys. Preparing to unpack .../libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2.1_all.deb ... Unpacking libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../libpython3.12-minimal_3.12.7-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-1_amd64.deb ... Unpacking python3.12-minimal (3.12.7-1) ... Setting up libpython3.12-minimal:amd64 (3.12.7-1) ... Setting up libexpat1:amd64 (2.6.3-1) ... Setting up python3.12-minimal (3.12.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20293 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_amd64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.1-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-1_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-1_amd64.deb ... Unpacking python3.12 (3.12.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21353 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_amd64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.3.2-1_amd64.deb ... Unpacking openssl (3.3.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.2-9_amd64.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../011-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../014-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../015-autotools-dev_20220109.1_all.deb ... 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Current default time zone: 'Etc/UTC' Local time is now: Sat Nov 29 09:48:57 UTC 2025. Universal Time is now: Sat Nov 29 09:48:57 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpgm-5.3-0t64:amd64 (5.3.128~dfsg-2.1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up liblzf1:amd64 (3.6-4+b1) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up libgfortran5:amd64 (14.2.0-7) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... Setting up openssl (3.3.2-1) ... Setting up libssw0:amd64 (1.1-15) ... Setting up readline-common (8.2-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up libsz2:amd64 (1.1.3-1) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-jquery-metadata (12-4) ... Setting up libjs-jquery-isonscreen (1.2.0-1.1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... Setting up groff-base (1.23.0-5) ... Setting up libxslt1.1:amd64 (1.1.35-1.1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Setting up libzmq5:amd64 (4.3.5-1+b2) ... Setting up libcurl4t64:amd64 (8.10.1-2) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:amd64 (1.3.0-3+b2) ... Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4) ... Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-4) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-1) ... Setting up python3.12 (3.12.7-1) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-zipp (3.20.2-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-markupsafe (2.1.5-1+b1) ... Setting up python3-platformdirs (4.3.6-1) ... Setting up python3-psutil (5.9.8-2) ... Setting up python3-tz (2024.1-2) ... Setting up python3-natsort (8.0.2-2) ... Setting up python3-six (1.16.0-7) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.1-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-werkzeug (3.0.4-1) ... Setting up python3-dill (0.3.9-1) ... Setting up python3-greenlet (3.1.0-1) ... Setting up python3-setproctitle:amd64 (1.3.3-1+b3) ... Setting up python3-idna (3.8-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-lxml:amd64 (5.3.0-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-bibtexparser (2.0.0b5+really1.4.1-1) ... /usr/lib/python3/dist-packages/bibtexparser/latexenc.py:93: SyntaxWarning: invalid escape sequence '\g' string = re.sub('([^{]|^)([A-Z])([^}]|$)', '\g<1>{\g<2>}\g<3>', string) Setting up python3-tzlocal (5.2-1.1) ... Setting up python3-tomlkit (0.13.2-1) ... Setting up python3-cffi-backend:amd64 (1.17.1-1) ... Setting up python3-blinker (1.8.2-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-filelock (3.16.1-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-tblib (3.0.0-5) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-ijson (3.3.0-1+b1) ... Setting up python3-jwt (2.7.0-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-public (4.1.0-2) ... Setting up python3-charset-normalizer (3.4.0-1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-bcrypt (4.2.0-2) ... Setting up python3-typeguard (4.3.0-1) ... Setting up python3-itsdangerous (2.2.0-1) ... Setting up python3-all (3.12.6-1) ... Setting up python3-coverage (7.6.0+dfsg1-2) ... Setting up python3-yaml (6.0.2-1) ... Setting up python3-pytest-cov (5.0.0-1) ... Setting up python3-click (8.1.7-2) ... Setting up python3-sqlalchemy (2.0.32+ds1-1) ... Setting up python3-flufl.lock (8.1.0-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-cryptography (43.0.0-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-py (1.11.0-2) ... Setting up python3-flask (3.0.3-1) ... Setting up python3-networkx (3.2.1-4) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-zmq (24.0.1-5+b2) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-11) ... Setting up python3-hdmedians (0.14.2-5.1+b1) ... Setting up python3-flask-sqlalchemy (3.1.1-2) ... Setting up python3-statsmodels-lib:amd64 (0.14.4+dfsg-1) ... Setting up python3-globus-sdk (3.46.0-1) ... Setting up dh-python (6.20241024) ... Setting up python3-scipy (1.13.1-5) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-4) ... Setting up python3-h5py-serial (3.11.0-7) ... Setting up python3-parsl (2024.10.14+ds-1) ... Setting up python3-patsy (0.5.6-1) ... Setting up python3-pandas (2.2.3+dfsg-4) ... Setting up python3-h5py (3.11.0-7) ... Setting up python3-statsmodels (0.14.4+dfsg-1) ... Setting up qiime (2024.5.0-1) ... Setting up python3-biom-format (2.1.16-1+b1) ... Setting up python3-skbio (0.6.2-3) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/q2-types-2024.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../q2-types_2024.5.0-1_source.changes dpkg-buildpackage: info: source package q2-types dpkg-buildpackage: info: source version 2024.5.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/q2-types-2024.5.0' dh_auto_clean rm -fr q2_types.egg-info/PKG-INFO q2_types.egg-info/SOURCES.txt q2_types.egg-info/dependency_links.txt q2_types.egg-info/entry_points.txt q2_types.egg-info/not-zip-safe q2_types.egg-info/top_level.txt make[1]: Leaving directory '/build/reproducible-path/q2-types-2024.5.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/q2-types/ -O--buildsystem=pybuild debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/q2-types-2024.5.0' dh_install find debian -name ".coverage*" -delete make[1]: Leaving directory '/build/reproducible-path/q2-types-2024.5.0' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package q2-types: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package q2-types: substitution variable ${python3:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'q2-types' in '../q2-types_2024.5.0-1_all.deb'. dpkg-genbuildinfo --build=binary -O../q2-types_2024.5.0-1_amd64.buildinfo dpkg-genchanges --build=binary -O../q2-types_2024.5.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3191147 and its subdirectories I: Current time: Fri Nov 28 21:49:54 -12 2025 I: pbuilder-time-stamp: 1764409794 Sun Oct 27 03:26:57 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Sun Oct 27 03:26:57 UTC 2024 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Sun Oct 27 03:31:23 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Sun Oct 27 03:31:24 UTC 2024 I: q2-types_2024.5.0-1_amd64.changes: Format: 1.8 Date: Tue, 25 Jun 2024 03:21:26 +0200 Source: q2-types Binary: q2-types Architecture: all Version: 2024.5.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: q2-types - QIIME 2 plugin defining types for microbiome analysis Changes: q2-types (2024.5.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Regenerate debian/control from debian/control.in (routine-update) * d/patches/pandas-2.0.patch: remove, applied upstream * d/patches/configparser.patch: copy from qiime packaging * Only build/test for Python 3.11 * Regenerate debian/control from debian/control.in (routine-update) Checksums-Sha1: 3f6c032b4f5562c01ba6640b5f05f028e66cbf74 4848 q2-types_2024.5.0-1_all.deb 732d89e6ee03dd46e3116935347dfa371e495a93 9408 q2-types_2024.5.0-1_amd64.buildinfo Checksums-Sha256: 7e79a6754306040a7c939a5d91fe2928a9121c2202fe1aeb8d347e4e450daca0 4848 q2-types_2024.5.0-1_all.deb 711e849de31cba52fce28dc5c9d898f2692bd9b8049da62e608e0d447eafcafe 9408 q2-types_2024.5.0-1_amd64.buildinfo Files: 1e25e222d588928d1662f911ee746c9e 4848 science optional q2-types_2024.5.0-1_all.deb 5ae5d9ad867d4f54946b244fe583a5c8 9408 science optional q2-types_2024.5.0-1_amd64.buildinfo Sun Oct 27 03:31:25 UTC 2024 I: diffoscope 282 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_14-23240.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.UNeH8sNH/q2-types_2024.5.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.UNeH8sNH/q2-types_2024.5.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.UNeH8sNH/q2-types_2024.5.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.UNeH8sNH/b1/q2-types_2024.5.0-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.UNeH8sNH/b2/q2-types_2024.5.0-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.388s) 0.388s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.017s) 0.017s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 734ms CPU time consumed: 731ms Sun Oct 27 03:43:46 UTC 2024 I: diffoscope 282 found no differences in the changes files, and a .buildinfo file also exists. Sun Oct 27 03:43:46 UTC 2024 I: q2-types from unstable built successfully and reproducibly on amd64. Sun Oct 27 03:43:48 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Oct 27 03:43:48 UTC 2024 I: Submitting 12K b1/q2-types_2024.5.0-1_amd64.buildinfo.asc Sun Oct 27 03:43:57 UTC 2024 I: Submitting 12K b2/q2-types_2024.5.0-1_amd64.buildinfo.asc Sun Oct 27 03:44:11 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Oct 27 03:44:11 UTC 2024 I: Done submitting .buildinfo files. Sun Oct 27 03:44:11 UTC 2024 I: Removing signed q2-types_2024.5.0-1_amd64.buildinfo.asc files: removed './b1/q2-types_2024.5.0-1_amd64.buildinfo.asc' removed './b2/q2-types_2024.5.0-1_amd64.buildinfo.asc'