Tue Nov 26 09:32:58 UTC 2024 I: starting to build python-pyomop/unstable/amd64 on jenkins on '2024-11-26 09:32' Tue Nov 26 09:32:58 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_4/38234/console.log Tue Nov 26 09:32:58 UTC 2024 I: Downloading source for unstable/python-pyomop=4.3.0-1 --2024-11-26 09:32:58-- http://deb.debian.org/debian/pool/main/p/python-pyomop/python-pyomop_4.3.0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2147 (2.1K) [text/prs.lines.tag] Saving to: ‘python-pyomop_4.3.0-1.dsc’ 0K .. 100% 257M=0s 2024-11-26 09:32:58 (257 MB/s) - ‘python-pyomop_4.3.0-1.dsc’ saved [2147/2147] Tue Nov 26 09:32:58 UTC 2024 I: python-pyomop_4.3.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pyomop Binary: pyomop, python-pyomop-doc, python3-pyomop Architecture: all Version: 4.3.0-1 Maintainer: Debian Python Team Uploaders: Michael Fladischer , Homepage: https://github.com/dermatologist/pyomop Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/python-team/packages/python-pyomop Vcs-Git: https://salsa.debian.org/python-team/packages/python-pyomop.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, python3-all Build-Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, pybuild-plugin-pyproject, python-pandas-doc, python-scipy-doc, python-sklearn-doc, python3-aiosqlite, python3-all, python3-click, python3-doc, python3-pandas, python3-pytest, python3-recommonmark, python3-scipy, python3-setuptools, python3-setuptools-scm, python3-sphinx, python3-sqlalchemy, sphinx-doc Package-List: pyomop deb science optional arch=all python-pyomop-doc deb doc optional arch=all python3-pyomop deb python optional arch=all Checksums-Sha1: 2980dab5b1463be2807f15e7f16618a4f4aca383 44527 python-pyomop_4.3.0.orig.tar.gz 72c99689faed7696357121d9f9a29fb84a75771f 5336 python-pyomop_4.3.0-1.debian.tar.xz Checksums-Sha256: 54cab97daa7d9cc31346851e74793ba9d22f5cf74ceae383fbd958194cdf24f1 44527 python-pyomop_4.3.0.orig.tar.gz a19f51d1c0e2943d9b707ce10ae4beca7a1e8ec6a252bdd9d51d0fc551c15584 5336 python-pyomop_4.3.0-1.debian.tar.xz Files: c84a7b4b2fe15eb0cffb3a57219b80c2 44527 python-pyomop_4.3.0.orig.tar.gz 6ccba6b5f5d7e6e1d5ee38a5a88268fa 5336 python-pyomop_4.3.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEEqVSlRXW87UkkCnJc/9PIi5l90WoFAmaY/HwACgkQ/9PIi5l9 0WpanQf+NUvQvx9jbAhaycJFlHn4+syiYn+QJIHlqzoj6kavDfBnU34xA3BQlAft YDBqc7CklgVM/QIkUk/wdQ0q4Tz45QNIB91Idja+diMT6snqzybNqfLCgVA1loS7 25s03vbYSOA9kECve52cxg0aS/BJFKyZM6OUIm3INnKqrhwo4+SgZRGSByle/u1H cbYNHV0DzFvBb7fPPoHeYvli506ygsjf9bJGuHRX+hYY9p438e1TQsjuyYDIavYn P69I2fHyyERpslE30rOZr+ZSOvWovNB3LkU2t1Kqdqtf1ZVE1MQgIYCm+YGxV8rb ER01ZWZ+KVsdFIp6epRSzutT2VRHbg== =DcHy -----END PGP SIGNATURE----- Tue Nov 26 09:32:58 UTC 2024 I: Checking whether the package is not for us Tue Nov 26 09:32:58 UTC 2024 I: Starting 1st build on remote node ionos15-amd64.debian.net. Tue Nov 26 09:32:58 UTC 2024 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Tue Nov 26 09:36:41 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Dec 29 03:55:59 -12 2025 I: pbuilder-time-stamp: 1767023759 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pyomop_4.3.0-1.dsc] I: copying [./python-pyomop_4.3.0.orig.tar.gz] I: copying [./python-pyomop_4.3.0-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Jul 18 11:29:00 2024 gpgv: using RSA key A954A54575BCED49240A725CFFD3C88B997DD16A gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-pyomop_4.3.0-1.dsc: no acceptable signature found dpkg-source: info: extracting python-pyomop in python-pyomop-4.3.0 dpkg-source: info: unpacking python-pyomop_4.3.0.orig.tar.gz dpkg-source: info: unpacking python-pyomop_4.3.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Do-not-treat-src-directory-as-a-Python-package.patch dpkg-source: info: applying 0002-Remove-remote-badges-to-prevent-privacy-issues.patch dpkg-source: info: applying 0003-Use-local-objects.inv-in-intersphinx-mapping.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1879104/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='09a87be315314110872185235db0a49b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1879104' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2bKK2agg/pbuilderrc_CnMh --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2bKK2agg/b1 --logfile b1/build.log python-pyomop_4.3.0-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1879104/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, pybuild-plugin-pyproject, python-pandas-doc, python-scipy-doc, python-sklearn-doc, python3-aiosqlite, python3-all, python3-click, python3-doc, python3-pandas, python3-pytest, python3-recommonmark, python3-scipy, python3-setuptools, python3-setuptools-scm, python3-sphinx, python3-sqlalchemy, sphinx-doc dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python-pandas-doc; however: Package python-pandas-doc is not installed. pbuilder-satisfydepends-dummy depends on python-scipy-doc; however: Package python-scipy-doc is not installed. pbuilder-satisfydepends-dummy depends on python-sklearn-doc; however: Package python-sklearn-doc is not installed. pbuilder-satisfydepends-dummy depends on python3-aiosqlite; however: Package python3-aiosqlite is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. pbuilder-satisfydepends-dummy depends on python3-doc; however: Package python3-doc is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-recommonmark; however: Package python3-recommonmark is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools-scm; however: Package python3-setuptools-scm is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-sqlalchemy; however: Package python3-sqlalchemy is not installed. pbuilder-satisfydepends-dummy depends on sphinx-doc; however: Package sphinx-doc is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} docutils-doc{a} dwz{a} file{a} fonts-mathjax{a} fonts-open-sans{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} javascript-common{a} libarchive-zip-perl{a} libblas3{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libjs-bootstrap4{a} libjs-jquery{a} libjs-mathjax{a} libjs-popper.js{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} pybuild-plugin-pyproject{a} python-babel-localedata{a} python-pandas-doc{a} python-requests-doc{a} python-scipy-doc{a} python-sklearn-doc{a} python3{a} python3-aiosqlite{a} python3-alabaster{a} python3-all{a} python3-autocommand{a} python3-babel{a} python3-build{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-commonmark{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-doc{a} python3-docutils{a} python3-greenlet{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygments{a} python3-pyproject-hooks{a} python3-pytest{a} python3-recommonmark{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-setuptools-scm{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sqlalchemy{a} python3-toml{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-doc{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} sphinx-doc{a} tzdata{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx node-jquery python3-bottleneck python3-bs4 python3-html5lib python3-lxml python3-matplotlib python3-numba python3-numexpr python3-odf python3-openpyxl python3-pil python3-pooch python3-sqlalchemy-ext python3-tables wget 0 packages upgraded, 141 newly installed, 0 to remove and 0 not upgraded. Need to get 197 MB of archives. After unpacking 1031 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.7-1 [26.8 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-3 [255 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 13 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.7-1 [9712 B] Get: 23 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.7-1 [27.8 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.0-2 [856 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.0-2 [2038 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31 [15.4 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 50 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 64 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.2.0-1 [731 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20241024 [109 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 docutils-doc all 0.21.2+dfsg-2 [1122 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 fonts-open-sans all 1.11-2 [574 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 javascript-common all 11+nmu1 [6260 B] Get: 77 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b2 [29.4 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [1992 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.45.1-1 [56.7 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 python3-build all 1.2.2-1 [36.0 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 pybuild-plugin-pyproject all 6.20241024 [11.4 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 python-babel-localedata all 2.16.0-1 [5696 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 python-pandas-doc all 2.2.3+dfsg-5 [9245 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 python-requests-doc all 2.32.3+dfsg-1 [196 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 python-scipy-doc all 1.14.1-2 [21.3 MB] Get: 100 http://deb.debian.org/debian unstable/main amd64 python-sklearn-doc all 1.4.2+dfsg-6 [52.3 MB] Get: 101 http://deb.debian.org/debian unstable/main amd64 python3-aiosqlite all 0.20.0-1 [16.4 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.0-2 [730 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.12.7-1 [1052 B] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-babel all 2.16.0-1 [114 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.0-1+b1 [140 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 python3-click all 8.1.7-2 [94.3 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 python3-commonmark all 0.9.1-6 [45.3 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-2 [43.3 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 python3.12-doc all 3.12.7-3 [13.4 MB] Get: 116 http://deb.debian.org/debian unstable/main amd64 python3-doc all 3.12.7-1 [9900 B] Get: 117 http://deb.debian.org/debian unstable/main amd64 python3-roman all 4.2-1 [10.4 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 python3-greenlet amd64 3.1.0-1+b1 [179 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.8-2 [41.6 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 122 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 123 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 2.1.5-1+b2 [13.9 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [4738 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-5+b1 [7307 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.3-1 [249 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 sphinx-common all 7.4.7-4 [731 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.0.7-2 [111 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 python3-sphinx all 7.4.7-4 [588 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 python3-recommonmark all 0.7.1+ds-5 [17.3 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.14.1-2 [20.5 MB] Get: 139 http://deb.debian.org/debian unstable/main amd64 python3-setuptools-scm all 8.1.0-1 [40.5 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 python3-sqlalchemy all 2.0.32+ds1-1 [1196 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 sphinx-doc all 7.4.7-4 [3493 kB] Fetched 197 MB in 5s (41.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_amd64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:amd64 (3.12.7-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20300 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_amd64.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_amd64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21362 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.7-1_amd64.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../001-libpython3.13-minimal_3.13.0-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../002-python3.13-minimal_3.13.0-2_amd64.deb ... Unpacking python3.13-minimal (3.13.0-2) ... Selecting previously unselected package sgml-base. Preparing to unpack .../003-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.3.2-2_amd64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../007-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../008-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../009-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../010-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../011-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../012-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../013-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../014-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../015-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../021-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../022-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../023-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../024-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../025-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../026-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../027-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../028-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../029-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../030-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../031-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../032-intltool-debian_0.35.0+20060710.6_all.deb ... 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Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Dec 29 15:56:56 UTC 2025. Universal Time is now: Mon Dec 29 15:56:56 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libgfortran5:amd64 (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libjson-perl (4.10000-1) ... Setting up python3.13-minimal (3.13.0-2) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.3.2-2) ... Setting up readline-common (8.2-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... 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Setting up python-scipy-doc (1.14.1-2) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:amd64 (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-markupsafe (2.1.5-1+b2) ... Setting up python3-wheel (0.45.1-1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-roman (4.2-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.2-1) ... Setting up python3-pyproject-hooks (1.2.0-1) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up python3-greenlet (3.1.0-1+b1) ... Setting up python3-idna (3.8-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-build (1.2.2-1) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-commonmark (0.9.1-6) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-defusedxml (0.7.1-2) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.12.7-1) ... Setting up python3-click (8.1.7-2) ... Setting up python3-sqlalchemy (2.0.32+ds1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-aiosqlite (0.20.0-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-babel (2.16.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-setuptools-scm (8.1.0-1) ... Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up dh-python (6.20241024) ... Setting up python3-scipy (1.14.1-2) ... Setting up pybuild-plugin-pyproject (6.20241024) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-5+b1) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Processing triggers for libc-bin (2.40-4) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up python3-sphinx (7.4.7-4) ... Setting up python3-recommonmark (0.7.1+ds-5) ... /usr/lib/python3/dist-packages/recommonmark/transform.py:254: SyntaxWarning: invalid escape sequence '\w' match = re.search('[ ]?[\w_-]+::.*', language) /usr/lib/python3/dist-packages/recommonmark/transform.py:254: SyntaxWarning: invalid escape sequence '\w' match = re.search('[ ]?[\w_-]+::.*', language) Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-pyomop-4.3.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pyomop_4.3.0-1_source.changes dpkg-buildpackage: info: source package python-pyomop dpkg-buildpackage: info: source version 4.3.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael Fladischer dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules execute_after_dh_clean make[1]: Entering directory '/build/reproducible-path/python-pyomop-4.3.0' rm -rf /build/reproducible-path/python-pyomop-4.3.0/docs/.build make[1]: Leaving directory '/build/reproducible-path/python-pyomop-4.3.0' debian/rules binary dh binary --with sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-pyomop-4.3.0/.pybuild/cpython3_3.13 * Building wheel... /usr/lib/python3/dist-packages/setuptools_scm/_integration/setuptools.py:92: UserWarning: version of None already set warnings.warn(f"version of {dist_name} already set") /usr/lib/python3/dist-packages/setuptools/dist.py:491: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'author-email' will not be supported in future versions. Please use the underscore name 'author_email' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:491: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'long-description' will not be supported in future versions. Please use the underscore name 'long_description' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:491: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'long-description-content-type' will not be supported in future versions. Please use the underscore name 'long_description_content_type' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:491: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'project-urls' will not be supported in future versions. Please use the underscore name 'project_urls' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running bdist_wheel /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:111: SetuptoolsDeprecationWarning: bdist_wheel.universal is deprecated !! ******************************************************************************** With Python 2.7 end-of-life, support for building universal wheels (i.e., wheels that support both Python 2 and Python 3) is being obviated. Please discontinue using this option, or if you still need it, file an issue with pypa/setuptools describing your use case. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! self.finalize_options() running build running build_py creating build/lib/pyomop copying src/pyomop/engine_factory.py -> build/lib/pyomop copying src/pyomop/main.py -> build/lib/pyomop copying src/pyomop/llm_query.py -> build/lib/pyomop copying src/pyomop/__main__.py -> build/lib/pyomop copying src/pyomop/llm_engine.py -> build/lib/pyomop copying src/pyomop/vocabulary.py -> build/lib/pyomop copying src/pyomop/__init__.py -> build/lib/pyomop copying src/pyomop/sqldict.py -> build/lib/pyomop copying src/pyomop/vector.py -> build/lib/pyomop copying src/pyomop/cdm6_tables.py -> build/lib/pyomop running egg_info creating src/pyomop.egg-info writing src/pyomop.egg-info/PKG-INFO writing dependency_links to src/pyomop.egg-info/dependency_links.txt writing entry points to src/pyomop.egg-info/entry_points.txt writing requirements to src/pyomop.egg-info/requires.txt writing top-level names to src/pyomop.egg-info/top_level.txt writing manifest file 'src/pyomop.egg-info/SOURCES.txt' reading manifest file 'src/pyomop.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' adding license file 'AUTHORS.md' writing manifest file 'src/pyomop.egg-info/SOURCES.txt' installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/pyomop copying build/lib/pyomop/engine_factory.py -> build/bdist.linux-x86_64/wheel/./pyomop copying build/lib/pyomop/main.py -> build/bdist.linux-x86_64/wheel/./pyomop copying build/lib/pyomop/llm_query.py -> build/bdist.linux-x86_64/wheel/./pyomop copying build/lib/pyomop/__main__.py -> build/bdist.linux-x86_64/wheel/./pyomop copying build/lib/pyomop/llm_engine.py -> build/bdist.linux-x86_64/wheel/./pyomop copying build/lib/pyomop/vocabulary.py -> build/bdist.linux-x86_64/wheel/./pyomop copying build/lib/pyomop/__init__.py -> build/bdist.linux-x86_64/wheel/./pyomop copying build/lib/pyomop/sqldict.py -> build/bdist.linux-x86_64/wheel/./pyomop copying build/lib/pyomop/vector.py -> build/bdist.linux-x86_64/wheel/./pyomop copying build/lib/pyomop/cdm6_tables.py -> build/bdist.linux-x86_64/wheel/./pyomop running install_egg_info Copying src/pyomop.egg-info to build/bdist.linux-x86_64/wheel/./pyomop-4.3.0.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/pyomop-4.3.0.dist-info/WHEEL creating '/build/reproducible-path/python-pyomop-4.3.0/.pybuild/cpython3_3.13/.tmp-lxralx3y/pyomop-4.3.0-py2.py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'pyomop/__init__.py' adding 'pyomop/__main__.py' adding 'pyomop/cdm6_tables.py' adding 'pyomop/engine_factory.py' adding 'pyomop/llm_engine.py' adding 'pyomop/llm_query.py' adding 'pyomop/main.py' adding 'pyomop/sqldict.py' adding 'pyomop/vector.py' adding 'pyomop/vocabulary.py' adding 'pyomop-4.3.0.dist-info/AUTHORS.md' adding 'pyomop-4.3.0.dist-info/LICENSE.txt' adding 'pyomop-4.3.0.dist-info/METADATA' adding 'pyomop-4.3.0.dist-info/WHEEL' adding 'pyomop-4.3.0.dist-info/entry_points.txt' adding 'pyomop-4.3.0.dist-info/top_level.txt' adding 'pyomop-4.3.0.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built pyomop-4.3.0-py2.py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-pyomop-4.3.0/.pybuild/cpython3_3.12 * Building wheel... /usr/lib/python3/dist-packages/setuptools_scm/_integration/setuptools.py:92: UserWarning: version of None already set warnings.warn(f"version of {dist_name} already set") /usr/lib/python3/dist-packages/setuptools/dist.py:491: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'author-email' will not be supported in future versions. Please use the underscore name 'author_email' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:491: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'long-description' will not be supported in future versions. Please use the underscore name 'long_description' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:491: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'long-description-content-type' will not be supported in future versions. Please use the underscore name 'long_description_content_type' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:491: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'project-urls' will not be supported in future versions. Please use the underscore name 'project_urls' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running bdist_wheel /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:111: SetuptoolsDeprecationWarning: bdist_wheel.universal is deprecated !! ******************************************************************************** With Python 2.7 end-of-life, support for building universal wheels (i.e., wheels that support both Python 2 and Python 3) is being obviated. Please discontinue using this option, or if you still need it, file an issue with pypa/setuptools describing your use case. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! self.finalize_options() running build running build_py running egg_info writing src/pyomop.egg-info/PKG-INFO writing dependency_links to src/pyomop.egg-info/dependency_links.txt writing entry points to src/pyomop.egg-info/entry_points.txt writing requirements to src/pyomop.egg-info/requires.txt writing top-level names to src/pyomop.egg-info/top_level.txt reading manifest file 'src/pyomop.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' adding license file 'AUTHORS.md' writing manifest file 'src/pyomop.egg-info/SOURCES.txt' installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/pyomop copying build/lib/pyomop/engine_factory.py -> build/bdist.linux-x86_64/wheel/./pyomop copying build/lib/pyomop/main.py -> build/bdist.linux-x86_64/wheel/./pyomop copying build/lib/pyomop/llm_query.py -> build/bdist.linux-x86_64/wheel/./pyomop copying build/lib/pyomop/__main__.py -> build/bdist.linux-x86_64/wheel/./pyomop copying build/lib/pyomop/llm_engine.py -> build/bdist.linux-x86_64/wheel/./pyomop copying build/lib/pyomop/vocabulary.py -> build/bdist.linux-x86_64/wheel/./pyomop copying build/lib/pyomop/__init__.py -> build/bdist.linux-x86_64/wheel/./pyomop copying build/lib/pyomop/sqldict.py -> build/bdist.linux-x86_64/wheel/./pyomop copying build/lib/pyomop/vector.py -> build/bdist.linux-x86_64/wheel/./pyomop copying build/lib/pyomop/cdm6_tables.py -> build/bdist.linux-x86_64/wheel/./pyomop running install_egg_info Copying src/pyomop.egg-info to build/bdist.linux-x86_64/wheel/./pyomop-4.3.0.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/pyomop-4.3.0.dist-info/WHEEL creating '/build/reproducible-path/python-pyomop-4.3.0/.pybuild/cpython3_3.12/.tmp-ab81186d/pyomop-4.3.0-py2.py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'pyomop/__init__.py' adding 'pyomop/__main__.py' adding 'pyomop/cdm6_tables.py' adding 'pyomop/engine_factory.py' adding 'pyomop/llm_engine.py' adding 'pyomop/llm_query.py' adding 'pyomop/main.py' adding 'pyomop/sqldict.py' adding 'pyomop/vector.py' adding 'pyomop/vocabulary.py' adding 'pyomop-4.3.0.dist-info/AUTHORS.md' adding 'pyomop-4.3.0.dist-info/LICENSE.txt' adding 'pyomop-4.3.0.dist-info/METADATA' adding 'pyomop-4.3.0.dist-info/WHEEL' adding 'pyomop-4.3.0.dist-info/entry_points.txt' adding 'pyomop-4.3.0.dist-info/top_level.txt' adding 'pyomop-4.3.0.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built pyomop-4.3.0-py2.py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-pyomop-4.3.0/.pybuild/cpython3_3.13/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 cachedir: .pytest_cache rootdir: /build/reproducible-path/python-pyomop-4.3.0/.pybuild/cpython3_3.13/build configfile: setup.cfg plugins: typeguard-4.4.1 collecting ... collected 7 items tests/test_a_pyomop.py::test_create_cohort PASSED [ 14%] tests/test_ab_vector.py::test_create_patient PASSED [ 28%] tests/test_b_create_vocab.py::test_create_tables PASSED [ 42%] tests/test_b_create_vocab.py::test_create_vocab PASSED [ 57%] tests/test_c_vocab.py::test_vocab PASSED [ 71%] tests/test_d_vector.py::test_create_vector PASSED [ 85%] tests/test_e_llm_query.py::test_create_cohort PASSED [100%] =============================== warnings summary =============================== tests/test_a_pyomop.py::test_create_cohort /build/reproducible-path/python-pyomop-4.3.0/.pybuild/cpython3_3.13/build/pyomop/__init__.py:12: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead _logger.warn("LLM is not installed. Please install LLM with pip install pyomop[llm] to use this package.") tests/test_a_pyomop.py::test_create_cohort tests/test_a_pyomop.py::test_create_cohort tests/test_ab_vector.py::test_create_patient tests/test_ab_vector.py::test_create_patient tests/test_ab_vector.py::test_create_patient tests/test_ab_vector.py::test_create_patient tests/test_d_vector.py::test_create_vector tests/test_d_vector.py::test_create_vector /usr/lib/python3/dist-packages/aiosqlite/core.py:115: DeprecationWarning: The default datetime adapter is deprecated as of Python 3.12; see the sqlite3 documentation for suggested replacement recipes result = function() tests/test_b_create_vocab.py::test_create_vocab /build/reproducible-path/python-pyomop-4.3.0/.pybuild/cpython3_3.13/build/pyomop/vocabulary.py:133: SAWarning: The garbage collector is trying to clean up non-checked-in connection >, which will be dropped, as it cannot be safely terminated. Please ensure that SQLAlchemy pooled connections are returned to the pool explicitly, either by calling ``close()`` or by using appropriate context managers to manage their lifecycle. await conn.run_sync(lambda sync_conn: automap.prepare(autoload_with=sync_conn)) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================= 7 passed, 10 warnings in 16.24s ======================== I: pybuild pybuild:334: rm -rf /build/reproducible-path/python-pyomop-4.3.0/.pybuild/cpython3_3.13/build/cdm6.sqlite /build/reproducible-path/python-pyomop-4.3.0/.pybuild/cpython3_3.13/build/.pytest_cache I: pybuild base:311: cd /build/reproducible-path/python-pyomop-4.3.0/.pybuild/cpython3_3.12/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 cachedir: .pytest_cache rootdir: /build/reproducible-path/python-pyomop-4.3.0/.pybuild/cpython3_3.12/build configfile: setup.cfg plugins: typeguard-4.4.1 collecting ... collected 7 items tests/test_a_pyomop.py::test_create_cohort PASSED [ 14%] tests/test_ab_vector.py::test_create_patient PASSED [ 28%] tests/test_b_create_vocab.py::test_create_tables PASSED [ 42%] tests/test_b_create_vocab.py::test_create_vocab PASSED [ 57%] tests/test_c_vocab.py::test_vocab PASSED [ 71%] tests/test_d_vector.py::test_create_vector PASSED [ 85%] tests/test_e_llm_query.py::test_create_cohort PASSED [100%] =============================== warnings summary =============================== tests/test_a_pyomop.py::test_create_cohort /build/reproducible-path/python-pyomop-4.3.0/.pybuild/cpython3_3.12/build/pyomop/__init__.py:12: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead _logger.warn("LLM is not installed. Please install LLM with pip install pyomop[llm] to use this package.") tests/test_a_pyomop.py::test_create_cohort tests/test_a_pyomop.py::test_create_cohort tests/test_ab_vector.py::test_create_patient tests/test_ab_vector.py::test_create_patient tests/test_ab_vector.py::test_create_patient tests/test_ab_vector.py::test_create_patient tests/test_d_vector.py::test_create_vector tests/test_d_vector.py::test_create_vector /usr/lib/python3/dist-packages/aiosqlite/core.py:115: DeprecationWarning: The default datetime adapter is deprecated as of Python 3.12; see the sqlite3 documentation for suggested replacement recipes result = function() tests/test_b_create_vocab.py::test_create_vocab /usr/lib/python3.12/asyncio/events.py:88: SAWarning: The garbage collector is trying to clean up non-checked-in connection >, which will be dropped, as it cannot be safely terminated. Please ensure that SQLAlchemy pooled connections are returned to the pool explicitly, either by calling ``close()`` or by using appropriate context managers to manage their lifecycle. self._context.run(self._callback, *self._args) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================= 7 passed, 10 warnings in 14.65s ======================== I: pybuild pybuild:334: rm -rf /build/reproducible-path/python-pyomop-4.3.0/.pybuild/cpython3_3.12/build/cdm6.sqlite /build/reproducible-path/python-pyomop-4.3.0/.pybuild/cpython3_3.12/build/.pytest_cache create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild debian/rules execute_before_dh_sphinxdoc make[1]: Entering directory '/build/reproducible-path/python-pyomop-4.3.0' PYTHONPATH=/build/reproducible-path/python-pyomop-4.3.0 python3 -m sphinx -b html -d /build/reproducible-path/python-pyomop-4.3.0/docs/.build/.doctrees -N /build/reproducible-path/python-pyomop-4.3.0/docs /build/reproducible-path/python-pyomop-4.3.0/debian/python-pyomop-doc/usr/share/doc/python-pyomop-doc/html Running Sphinx v7.4.7 Creating file /build/reproducible-path/python-pyomop-4.3.0/docs/api/pyomop.rst. Creating file /build/reproducible-path/python-pyomop-4.3.0/docs/api/modules.rst. LLM is not installed. Please install LLM with pip install pyomop[llm] to use this package. loading translations [en]... done making output directory... done Converting `source_suffix = ['.rst', '.md']` to `source_suffix = {'.rst': 'restructuredtext', '.md': 'restructuredtext'}`. loading intersphinx inventory 'python' from /usr/share/doc/python3.12/html/objects.inv... loading intersphinx inventory 'sphinx' from /usr/share/doc/sphinx-doc/html/objects.inv... loading intersphinx inventory 'sklearn' from /usr/share/doc/python-sklearn-doc/html/objects.inv... loading intersphinx inventory 'pandas' from /usr/share/doc/python-pandas-doc/html/objects.inv... loading intersphinx inventory 'scipy' from /usr/share/doc/python-scipy-doc/html/objects.inv... [autosummary] generating autosummary for: api/modules.rst, api/pyomop.rst, authors.md, changelog.md, index.md, license.rst, readme.md WARNING: Failed to import pyomop.llm_engine. Possible hints: * AttributeError: module 'pyomop' has no attribute 'llm_engine' * ModuleNotFoundError: No module named 'overrides' WARNING: Failed to import pyomop.llm_query. Possible hints: * ModuleNotFoundError: No module named 'llama_index' * AttributeError: module 'pyomop' has no attribute 'llm_query' building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 7 source files that are out of date updating environment: [new config] 7 added, 0 changed, 0 removed reading sources... [ 14%] api/modules reading sources... [ 29%] api/pyomop reading sources... [ 43%] authors /usr/lib/python3/dist-packages/recommonmark/parser.py:75: UserWarning: Container node skipped: type=document warn("Container node skipped: type={0}".format(mdnode.t)) reading sources... [ 57%] changelog /usr/lib/python3/dist-packages/recommonmark/parser.py:75: UserWarning: Container node skipped: type=document warn("Container node skipped: type={0}".format(mdnode.t)) reading sources... [ 71%] index /usr/lib/python3/dist-packages/recommonmark/parser.py:75: UserWarning: Container node skipped: type=document warn("Container node skipped: type={0}".format(mdnode.t)) reading sources... [ 86%] license reading sources... [100%] readme /usr/lib/python3/dist-packages/recommonmark/parser.py:75: UserWarning: Container node skipped: type=document warn("Container node skipped: type={0}".format(mdnode.t)) WARNING: autodoc: failed to import module 'llm_engine' from module 'pyomop'; the following exception was raised: No module named 'overrides' WARNING: autodoc: failed to import module 'llm_query' from module 'pyomop'; the following exception was raised: No module named 'llama_index' LICENSE.txt:11: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:14: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:23: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:30: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:35: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:41: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:45: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:51: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:62: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:69: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:78: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:81: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:85: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:90: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:93: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:100: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:104: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:115: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:119: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:124: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:135: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:148: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:152: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:157: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:165: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:176: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:182: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:188: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:198: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:206: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:211: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:236: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:248: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:294: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:298: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:311: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:319: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:330: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:338: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:346: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:355: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:362: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:389: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:399: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:404: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:410: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:416: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:423: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:430: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:438: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:449: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:454: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:464: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:474: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:478: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:488: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:493: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:500: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:514: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:522: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:537: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:543: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:555: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:566: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:571: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:580: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:585: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:592: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:603: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:615: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:626: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:630: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:653: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:657: WARNING: Inline interpreted text or phrase reference start-string without end-string. LICENSE.txt:657: WARNING: Inline interpreted text or phrase reference start-string without end-string. LICENSE.txt:661: WARNING: Inline interpreted text or phrase reference start-string without end-string. LICENSE.txt:661: WARNING: Inline interpreted text or phrase reference start-string without end-string. LICENSE.txt:666: WARNING: Block quote ends without a blank line; unexpected unindent. LICENSE.txt:671: WARNING: Block quote ends without a blank line; unexpected unindent. looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... done copying extra files... done copying assets: done writing output... [ 14%] api/modules writing output... [ 29%] api/pyomop writing output... [ 43%] authors writing output... [ 57%] changelog writing output... [ 71%] index writing output... [ 86%] license writing output... [100%] readme /build/reproducible-path/python-pyomop-4.3.0/docs/readme.md:8: WARNING: None:any reference target not found: examples/llm_example.py /build/reproducible-path/python-pyomop-4.3.0/docs/readme.md:8: WARNING: None:any reference target not found: examples/llm_example.py /build/reproducible-path/python-pyomop-4.3.0/docs/readme.md:15: WARNING: None:any reference target not found: examples/llm_example.py generating indices... genindex py-modindex done highlighting module code... [ 20%] pyomop.cdm6_tables highlighting module code... [ 40%] pyomop.engine_factory highlighting module code... [ 60%] pyomop.main highlighting module code... [ 80%] pyomop.vector highlighting module code... [100%] pyomop.vocabulary writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 86 warnings. The HTML pages are in debian/python-pyomop-doc/usr/share/doc/python-pyomop-doc/html. make[1]: Leaving directory '/build/reproducible-path/python-pyomop-4.3.0' dh_sphinxdoc -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules execute_before_dh_installman make[1]: Entering directory '/build/reproducible-path/python-pyomop-4.3.0' PYTHONPATH=/build/reproducible-path/python-pyomop-4.3.0/src help2man --no-discard-stderr -n 'OHSDI OMOP Common Data Model tools' /build/reproducible-path/python-pyomop-4.3.0/debian/tmp/usr/bin/pyomop >/build/reproducible-path/python-pyomop-4.3.0/pyomop.1 make[1]: Leaving directory '/build/reproducible-path/python-pyomop-4.3.0' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-pyomop-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'pyomop' in '../pyomop_4.3.0-1_all.deb'. dpkg-deb: building package 'python-pyomop-doc' in '../python-pyomop-doc_4.3.0-1_all.deb'. dpkg-deb: building package 'python3-pyomop' in '../python3-pyomop_4.3.0-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pyomop_4.3.0-1_amd64.buildinfo dpkg-genchanges --build=binary -O../python-pyomop_4.3.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1879104 and its subdirectories I: Current time: Mon Dec 29 03:59:40 -12 2025 I: pbuilder-time-stamp: 1767023980 Tue Nov 26 09:36:42 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Tue Nov 26 09:36:42 UTC 2024 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Tue Nov 26 09:43:30 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Tue Nov 26 09:43:31 UTC 2024 I: python-pyomop_4.3.0-1_amd64.changes: Format: 1.8 Date: Thu, 18 Jul 2024 11:21:07 +0000 Source: python-pyomop Binary: pyomop python-pyomop-doc python3-pyomop Architecture: all Version: 4.3.0-1 Distribution: unstable Urgency: low Maintainer: Debian Python Team Changed-By: Michael Fladischer Description: pyomop - OHSDI OMOP Common Data Model tools python-pyomop-doc - OHSDI OMOP Common Data Model tools (Documentation) python3-pyomop - OHSDI OMOP Common Data Model tools (Python3 version) Changes: python-pyomop (4.3.0-1) unstable; urgency=low . * New upstream version 4.3.0 * Refresh patches. * Bump Standards-Version to 4.7.0. Checksums-Sha1: 8083bf678a281785d723a2e80a240e6081f85451 6052 pyomop_4.3.0-1_all.deb 622a60a9ae2590d9acdcde308f879192a745bc0c 76928 python-pyomop-doc_4.3.0-1_all.deb 6937cfbbc200c19cdadf9d5342ead18145340eb6 8863 python-pyomop_4.3.0-1_amd64.buildinfo 88dd4b3ac98979439c264d56d3ae267c56a078e6 16268 python3-pyomop_4.3.0-1_all.deb Checksums-Sha256: 6463e3ab47858e15a733e5575dbcdfe4c06af0d4d1a30b97f5418e5063664da1 6052 pyomop_4.3.0-1_all.deb 94d818cc3f1c2868297e4c438aacb3fdbe98636a6e419c3a2d8074c30d611a40 76928 python-pyomop-doc_4.3.0-1_all.deb 50bd65b91df725eb8bb046536cfaa32e3ba0db3f8ade556dca07b2e1443f36bb 8863 python-pyomop_4.3.0-1_amd64.buildinfo cd84981dd5e60da66dbd00aa3fc47f9f0f408f9a961ee5ebc6f88bee2eab95df 16268 python3-pyomop_4.3.0-1_all.deb Files: f1cc03150d7be07ca0dc3f7ba614345d 6052 science optional pyomop_4.3.0-1_all.deb ce2243598de1c8deecaddc6e8e09134c 76928 doc optional python-pyomop-doc_4.3.0-1_all.deb 4f9717f035926c72ea838994f8e241c9 8863 python optional python-pyomop_4.3.0-1_amd64.buildinfo 16fc6370138b4d200e8a66c9c012cd2a 16268 python optional python3-pyomop_4.3.0-1_all.deb Tue Nov 26 09:43:32 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_4-38234.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.2bKK2agg/python-pyomop_4.3.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.2bKK2agg/python-pyomop_4.3.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.2bKK2agg/python-pyomop_4.3.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.2bKK2agg/b1/python-pyomop_4.3.0-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.2bKK2agg/b2/python-pyomop_4.3.0-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.358s) 0.358s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.019s) 0.019s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 707ms CPU time consumed: 708ms Tue Nov 26 09:43:33 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Tue Nov 26 09:43:33 UTC 2024 I: python-pyomop from unstable built successfully and reproducibly on amd64. Tue Nov 26 09:43:34 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Nov 26 09:43:34 UTC 2024 I: Submitting 12K b1/python-pyomop_4.3.0-1_amd64.buildinfo.asc Tue Nov 26 09:43:34 UTC 2024 I: Submitting 12K b2/python-pyomop_4.3.0-1_amd64.buildinfo.asc Tue Nov 26 09:43:35 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Nov 26 09:43:35 UTC 2024 I: Done submitting .buildinfo files. Tue Nov 26 09:43:35 UTC 2024 I: Removing signed python-pyomop_4.3.0-1_amd64.buildinfo.asc files: removed './b1/python-pyomop_4.3.0-1_amd64.buildinfo.asc' removed './b2/python-pyomop_4.3.0-1_amd64.buildinfo.asc'