Sun Jan 5 09:09:58 UTC 2025 I: starting to build python-cobra/unstable/amd64 on jenkins on '2025-01-05 09:09' Sun Jan 5 09:09:58 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_17/27281/console.log Sun Jan 5 09:09:58 UTC 2025 I: Downloading source for unstable/python-cobra=0.29.1-1 --2025-01-05 09:09:58-- http://deb.debian.org/debian/pool/main/p/python-cobra/python-cobra_0.29.1-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 3106 (3.0K) [text/prs.lines.tag] Saving to: ‘python-cobra_0.29.1-1.dsc’ 0K ... 100% 493M=0s 2025-01-05 09:09:58 (493 MB/s) - ‘python-cobra_0.29.1-1.dsc’ saved [3106/3106] Sun Jan 5 09:09:58 UTC 2025 I: python-cobra_0.29.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-cobra Binary: python3-cobra, python-cobra-data Architecture: any-amd64 any-i386 arm64 armel armhf mips mips64el mipsel ppc64el alpha hppa m68k powerpc powerpcspe ppc64 sh4 sparc64 all Version: 0.29.1-1 Maintainer: Debian Med Packaging Team Uploaders: Afif Elghraoui Homepage: https://opencobra.github.io/cobrapy/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-cobra Vcs-Git: https://salsa.debian.org/med-team/python-cobra.git Testsuite: autopkgtest Testsuite-Triggers: python3-jsonschema, python3-pytest, python3-pytest-benchmark, python3-pytest-mock, python3-sbml5, python3-scipy, quilt Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-importlib-resources, python3-numpy, python3-optlang (>= 1.7.0-1~), python3-ruamel.yaml, python3-pandas, python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 5.0.8-1~), python3-tabulate, python3-sbml5, cython3, python3-pytest , python3-pytest-benchmark , python3-pytest-mock , python3-jsonschema , libsbml5-dev , python3-matplotlib , python3-platformdirs , python3-diskcache , python3-httpx , python3-pydantic , python3-rich Package-List: python-cobra-data deb python optional arch=all python3-cobra deb python optional arch=any-amd64,arm64,armel,armhf,any-i386,mips,mips64el,mipsel,ppc64el,alpha,hppa,m68k,powerpc,powerpcspe,ppc64,sh4,sparc64,x32 Checksums-Sha1: 3c26cc11421692c1d151377cffe83b23eac4a1a7 3651233 python-cobra_0.29.1.orig.tar.gz 3d5c6f3ccf5a6849d89cf45da24dd1538c2a6c43 9084 python-cobra_0.29.1-1.debian.tar.xz Checksums-Sha256: 2c60269959e212525ca79e85d990dba48c92e30db5795446f48e777912fc92a2 3651233 python-cobra_0.29.1.orig.tar.gz 480a90c0ea433963093b5c4c6a15e689812d8026000cc84d085b98f8c3f8308e 9084 python-cobra_0.29.1-1.debian.tar.xz Files: 2100d8959c33d2f04185dfcaab39c9e0 3651233 python-cobra_0.29.1.orig.tar.gz 9ad74c2e4d07b753324a3d57bb16cc56 9084 python-cobra_0.29.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmbwGoIRHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBrIhQ//Ysswf4d6YoOHW5Fdokqr1D01yR3x9yIq 5LVK81B20K+2pyLDrSFNBHBiSJ4dYXO2CdJOIPrCRu1QEMKSuGvNbrbUP2zu8ADl ar2y7E2Yg5SRHkqs3lfbIuY8o8nDhX5P42BfeSpodQtWPIvxIqOu854AaE2JAK88 PkdeB1BgaEZaii8ov3iaUJGfmgbzeh1sEP+2q90CTLPRpFcAwXPbiPq0O6bcKIzA p3fQPEUAb18IVtOaByNcKzyLHGV9+WLvt/w2qFzTIyE2XvOaTsoWfnIl4IcxXYGS bJBbsQastLfPOw8es9nQj76MC7L6o9EUOrTaG0WyxqiEHE/tkshWKgyGyz5ZJoYr zFLqELAGxwoqlTliNBCfHi3nwQ+2fCzwl3gZF3VW6mmR0YngkHLf3tOt4L+3dqnf iAcI3b5KhcYFrLap/u6EdcxR8tQqGneeh4giK7xfI3JKUGBQesukINqOAes2MG4f rwIESXSz+Cnc/Zb4KiFF3YWBDnxTpIyc0Jq8Qf4hCfmMffv1mPkF3uagz1DsAfGi bJGXWocP4M2dz64XITi3Ba+tT/umcUWBEY8XyVtFkSFR0GjrPyx8qvOefamHQ3J3 uj9sv3q1q6i2I2W+FVSleA21a6Hc/G5uILEyFtaPKnTGxGrnm7DCk/BAa9tGE6mu 3/VRQjiAryc= =3+tc -----END PGP SIGNATURE----- Sun Jan 5 09:09:58 UTC 2025 I: Checking whether the package is not for us Sun Jan 5 09:09:58 UTC 2025 I: Starting 1st build on remote node ionos1-amd64.debian.net. Sun Jan 5 09:09:58 UTC 2025 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Sun Jan 5 09:21:58 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Jan 4 21:10:12 -12 2025 I: pbuilder-time-stamp: 1736068212 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-cobra_0.29.1-1.dsc] I: copying [./python-cobra_0.29.1.orig.tar.gz] I: copying [./python-cobra_0.29.1-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-cobra_0.29.1-1.dsc: unsupported subcommand dpkg-source: info: extracting python-cobra in python-cobra-0.29.1 dpkg-source: info: unpacking python-cobra_0.29.1.orig.tar.gz dpkg-source: info: unpacking python-cobra_0.29.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying mathjax.patch dpkg-source: info: applying xfail_test_show_versions.patch dpkg-source: info: applying ignore_tests.patch dpkg-source: info: applying 32-bit-test.patch dpkg-source: info: applying no_future_dependency.patch dpkg-source: info: applying remove-appdirs.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1912494/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='4d037a9c2f3c4085b02670a8fb59118c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1912494' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.66Qqra80/pbuilderrc_cjUo --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.66Qqra80/b1 --logfile b1/build.log python-cobra_0.29.1-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1912494/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-importlib-resources, python3-numpy, python3-optlang (>= 1.7.0-1~), python3-ruamel.yaml, python3-pandas, python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 5.0.8-1~), python3-tabulate, python3-sbml5, cython3, python3-pytest, python3-pytest-benchmark, python3-pytest-mock, python3-jsonschema, libsbml5-dev, python3-matplotlib, python3-platformdirs, python3-diskcache, python3-httpx, python3-pydantic, python3-rich dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19848 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on libglpk-dev; however: Package libglpk-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-depinfo; however: Package python3-depinfo is not installed. pbuilder-satisfydepends-dummy depends on python3-importlib-resources; however: Package python3-importlib-resources is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-optlang (>= 1.7.0-1~); however: Package python3-optlang is not installed. pbuilder-satisfydepends-dummy depends on python3-ruamel.yaml; however: Package python3-ruamel.yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pip; however: Package python3-pip is not installed. pbuilder-satisfydepends-dummy depends on python3-pipdeptree; however: Package python3-pipdeptree is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-swiglpk (>= 5.0.8-1~); however: Package python3-swiglpk is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate; however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-sbml5; however: Package python3-sbml5 is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-benchmark; however: Package python3-pytest-benchmark is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however: Package python3-pytest-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-jsonschema; however: Package python3-jsonschema is not installed. pbuilder-satisfydepends-dummy depends on libsbml5-dev; however: Package libsbml5-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-platformdirs; however: Package python3-platformdirs is not installed. pbuilder-satisfydepends-dummy depends on python3-diskcache; however: Package python3-diskcache is not installed. pbuilder-satisfydepends-dummy depends on python3-httpx; however: Package python3-httpx is not installed. pbuilder-satisfydepends-dummy depends on python3-pydantic; however: Package python3-pydantic is not installed. pbuilder-satisfydepends-dummy depends on python3-rich; however: Package python3-rich is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libamd3{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbtf2{a} libcamd3{a} libccolamd3{a} libcholmod5{a} libcolamd3{a} libcom-err2{a} libcxsparse4{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libglpk-dev{a} libglpk40{a} libgmp-dev{a} libgmpxx4ldbl{a} libgpg-error0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libklu2{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldl3{a} liblerc4{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenjp2-7{a} libparu1{a} libpipeline1{a} libpng16-16t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqhull-r8.0{a} libraqm0{a} librbio4{a} libreadline8t64{a} libsbml5-dev{a} libsbml5t64{a} libsharpyuv0{a} libspex3{a} libspqr4{a} libsuitesparse-dev{a} libsuitesparse-mongoose3{a} libsuitesparseconfig7{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libumfpack6{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-annotated-types{a} python3-anyio{a} python3-attr{a} python3-autocommand{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-contourpy{a} python3-cpuinfo{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-depinfo{a} python3-dev{a} python3-diskcache{a} python3-dnspython{a} python3-email-validator{a} python3-fonttools{a} python3-fs{a} python3-h11{a} python3-httpcore{a} python3-httpx{a} python3-idna{a} python3-importlib-resources{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-markdown-it{a} python3-matplotlib{a} python3-mdurl{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-optlang{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pip{a} python3-pipdeptree{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pydantic{a} python3-pydantic-core{a} python3-pygments{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-benchmark{a} python3-pytest-mock{a} python3-referencing{a} python3-requests{a} python3-rich{a} python3-rpds-py{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-sbml5{a} python3-scipy{a} python3-setuptools{a} python3-sniffio{a} python3-swiglpk{a} python3-sympy{a} python3-tabulate{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-unicodedata2{a} python3-urllib3{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.12-tk{a} python3.13-tk{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libgraphblas-dev libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-cryptography python3-cssselect python3-elasticsearch python3-freezegun python3-graphviz python3-h2 python3-html5lib python3-jinja2 python3-json-pointer python3-numba python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-pygal python3-rfc3987 python3-tables python3-uritemplate python3-webcolors shared-mime-info wget xdg-user-dirs 0 packages upgraded, 226 newly installed, 0 to remove and 0 not upgraded. Need to get 154 MB of archives. After unpacking 757 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.8-3 [817 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.8-3 [2162 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.8-1 [26.9 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-4 [256 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 13 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.8-3 [1969 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.8-3 [677 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.8-1 [9788 B] Get: 23 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.8-1 [27.9 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20241223 [164 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-3 [200 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-13 [91.9 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-3 [723 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1042 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.44-3 [280 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b3 [27.8 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b3 [54.6 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.15-1 [791 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get: 62 http://deb.debian.org/debian unstable/main amd64 cython3 amd64 3.0.11+dfsg-1+b1 [3157 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.23 [90.6 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 69 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-3 [1600 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.23 [919 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 84 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 python3-importlib-resources all 6.4.5-1 [23.1 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.6.0-1 [720 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20241217 [113 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 fonts-lyx all 2.4.2.1-1 [190 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-2 [23.8 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libamd3 amd64 1:7.8.3+dfsg-2 [40.7 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.0-4 [161 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libbtf2 amd64 1:7.8.3+dfsg-2 [24.7 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libcamd3 amd64 1:7.8.3+dfsg-2 [37.5 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libccolamd3 amd64 1:7.8.3+dfsg-2 [39.2 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-2 [32.5 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-12 [836 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libcholmod5 amd64 1:7.8.3+dfsg-2 [638 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libcxsparse4 amd64 1:7.8.3+dfsg-2 [84.2 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libgpg-error0 amd64 1.51-3 [82.2 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.82.4-1 [1501 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libltdl7 amd64 2.4.7-8 [393 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libglpk40 amd64 5.0-1+b2 [401 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libklu2 amd64 1:7.8.3+dfsg-2 [90.6 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libldl3 amd64 1:7.8.3+dfsg-2 [24.5 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libsuitesparse-mongoose3 amd64 1:7.8.3+dfsg-2 [47.3 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libumfpack6 amd64 1:7.8.3+dfsg-2 [280 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 librbio4 amd64 1:7.8.3+dfsg-2 [39.9 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libspqr4 amd64 1:7.8.3+dfsg-2 [146 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libspex3 amd64 1:7.8.3+dfsg-2 [59.9 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libparu1 amd64 1:7.8.3+dfsg-2 [65.1 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.0-4 [4991 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libsuitesparse-dev amd64 1:7.8.3+dfsg-2 [1476 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libglpk-dev amd64 5.0-1+b2 [471 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 10.1.0-2 [478 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.1.3-3 [30.4 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b2 [29.4 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.0-2+b4 [199 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libpython3.12t64 amd64 3.12.8-3 [2154 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libpython3.12-dev amd64 3.12.8-3 [5134 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.12.8-1 [10.1 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-6+b2 [248 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libsbml5t64 amd64 5.20.2+dfsg-8+b1 [2144 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libsbml5-dev amd64 5.20.2+dfsg-8+b1 [3173 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.4.0-0.1+b1 [111 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.4.0-0.1+b1 [123 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.35-1.1+b1 [233 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 python3-annotated-types all 0.7.0-1 [18.8 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.8-2 [41.6 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 python3-sniffio all 1.3.1-1 [7120 B] Get: 156 http://deb.debian.org/debian unstable/main amd64 python3-anyio all 4.7.0-1 [61.8 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 python3-attr all 24.2.0-1 [68.4 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 python3-brotli amd64 1.1.0-2+b6 [321 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 160 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.0-1+b1 [140 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 python3-click all 8.1.8-1 [95.2 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [4738 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 python3-contourpy amd64 1.3.1-1 [264 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 python3-cpuinfo all 9.0.0+git20221119-2 [23.4 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get: 167 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 python3-depinfo amd64 2.2.0-3 [11.6 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 python3.12-dev amd64 3.12.8-3 [505 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.12.8-1 [26.1 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 python3-diskcache all 5.6.3-1 [34.4 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 python3-dnspython all 2.7.0-1 [164 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 python3-email-validator all 2.2.0-1 [31.6 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 python3-tz all 2024.2-1 [31.0 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 python3-fs all 2.4.16-5.1 [95.2 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 python3-lxml amd64 5.3.0-1+b1 [1676 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 python3-lz4 amd64 4.4.0+dfsg-1 [25.5 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.14.1-3 [20.5 MB] Get: 181 http://deb.debian.org/debian unstable/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 python3-sympy all 1.13.3-1 [4147 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 python3-unicodedata2 amd64 15.1.0+ds-1+b3 [299 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 python3-fonttools amd64 4.55.0-3 [1634 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 python3-h11 all 0.14.0-1 [50.1 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 python3-httpcore all 1.0.7-1 [44.7 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 python3-mdurl all 0.1.2-1 [9444 B] Get: 191 http://deb.debian.org/debian unstable/main amd64 python3-markdown-it all 3.0.0-2 [62.5 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 python3-rich all 13.9.4-1 [203 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 python3-httpx all 0.27.2-1 [77.6 kB] Get: 194 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 195 http://deb.debian.org/debian unstable/main amd64 python3-rpds-py amd64 0.21.0-2 [287 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 python3-referencing all 0.35.1-2 [23.5 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get: 198 http://deb.debian.org/debian unstable/main amd64 python3-jsonschema all 4.19.2-5 [71.4 kB] Get: 199 http://deb.debian.org/debian unstable/main amd64 python3-kiwisolver amd64 1.4.7-2+b1 [77.0 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 10.4.0-1+b1 [522 kB] Get: 201 http://deb.debian.org/debian unstable/main amd64 python3.12-tk amd64 3.12.8-3 [113 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 python3.13-tk amd64 3.13.1-3 [103 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 python3-tk amd64 3.13.1-1 [9464 B] Get: 204 http://deb.debian.org/debian unstable/main amd64 python3-pil.imagetk amd64 10.4.0-1+b1 [79.8 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 python3-matplotlib amd64 3.8.3-3+b1 [5654 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 python3-swiglpk amd64 5.0.10-2+b1 [65.4 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 python3-optlang all 1.8.2-3 [5376 kB] Get: 210 http://deb.debian.org/debian unstable/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-5+b1 [7307 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.45.1-1 [56.7 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 python3-pip all 24.3.1+dfsg-1 [1441 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 python3-pipdeptree amd64 2.2.0-3 [20.6 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 216 http://deb.debian.org/debian unstable/main amd64 python3-pydantic-core amd64 2.27.2-1 [1706 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 python3-pydantic amd64 2.10.4-2 [346 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.4-1 [250 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 python3-pytest-benchmark all 5.1.0-1 [44.4 kB] Get: 220 http://deb.debian.org/debian unstable/main amd64 python3-pytest-mock all 3.14.0-2 [18.3 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.2.3-4 [112 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 python3-ruamel.yaml.clib amd64 0.2.8+ds-2+b1 [179 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 python3-ruamel.yaml all 0.18.6+ds-3 [145 kB] Get: 225 http://deb.debian.org/debian unstable/main amd64 python3-sbml5 amd64 5.20.2+dfsg-8+b1 [3428 kB] Get: 226 http://deb.debian.org/debian unstable/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] Fetched 154 MB in 8s (19.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19848 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.8-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../16-libpython3.12-stdlib_3.12.8-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.8-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../17-python3.12_3.12.8-3_amd64.deb ... Unpacking python3.12 (3.12.8-3) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up python3-optlang (1.8.2-3) ... /usr/lib/python3/dist-packages/optlang/matrix_interface.py:60: SyntaxWarning: invalid escape sequence '\m' """A representation of the convex optimizatgion problem in standard form. /usr/lib/python3/dist-packages/optlang/tests/data/parse_the_final_netlib_results.py:34: SyntaxWarning: invalid escape sequence '\*' OBJ_REGEX = re.compile('\* Objvalue : -?\d+/\d+') /usr/lib/python3/dist-packages/optlang/tests/test_cplex_interface.py:222: SyntaxWarning: invalid escape sequence '\s' self.assertRegexpMatches(str(self.model), '\s*Dummy_\d+:\s*y \+ z \+ 2\.333 x - .* = -300') Setting up python3-pytest-benchmark (5.1.0-1) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up python3-fs (2.4.16-5.1) ... Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-contourpy (1.3.1-1) ... Setting up python3-jsonschema-specifications (2023.12.1-2) ... Setting up dh-python (6.20241217) ... Setting up python3-scipy (1.14.1-3) ... Setting up python3-rich (13.9.4-1) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-5+b1) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Setting up python3-httpx (0.27.2-1) ... Setting up python3-jsonschema (4.19.2-5) ... Setting up python3-fonttools (4.55.0-3) ... Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... Setting up python3-matplotlib (3.8.3-3+b1) ... Processing triggers for libc-bin (2.40-5) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-cobra-0.29.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cobra_0.29.1-1_source.changes dpkg-buildpackage: info: source package python-cobra dpkg-buildpackage: info: source version 0.29.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-cobra-0.29.1' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -f cobra/solvers/cglpk.c rm -rf .pytest_cache make[1]: Leaving directory '/build/reproducible-path/python-cobra-0.29.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra copying src/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra copying src/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io copying src/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io copying src/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io copying src/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io copying src/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io copying src/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io copying src/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium copying src/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium copying src/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium copying src/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium copying src/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation copying src/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation copying src/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation copying src/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation copying src/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation copying src/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary copying src/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary copying src/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary copying src/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary copying src/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary copying src/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/gene.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling copying src/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling copying src/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling copying src/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling copying src/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling copying src/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling copying src/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util copying src/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util copying src/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util copying src/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util copying src/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util copying src/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util copying src/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0 benchmark: 5.1.0 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000) rootdir: /build/reproducible-path/python-cobra-0.29.1 configfile: tox.ini plugins: mock-3.14.0, benchmark-5.1.0, anyio-4.7.0, typeguard-4.4.1 collected 553 items tests/test_core/test_configuration.py ...... [ 1%] tests/test_core/test_core_reaction.py ..........ss...................... [ 7%] ...................x....... [ 12%] tests/test_core/test_dictlist.py ...................... [ 16%] tests/test_core/test_formula.py ..... [ 16%] tests/test_core/test_gene.py . [ 17%] tests/test_core/test_gpr.py .....................x..x................... [ 25%] .......................... [ 29%] tests/test_core/test_group.py .. [ 30%] tests/test_core/test_metabolite.py ...ss.ss. [ 31%] tests/test_core/test_model.py .......................................... [ 39%] ...........s..s.ss. [ 42%] tests/test_core/test_solution.py .ss [ 43%] tests/test_flux_analysis/test_deletion.py ....s..... [ 45%] tests/test_flux_analysis/test_fastcc.py .... [ 45%] tests/test_flux_analysis/test_geometric.py .. [ 46%] tests/test_flux_analysis/test_moma.py . [ 46%] tests/test_flux_analysis/test_parsimonious.py .. [ 46%] tests/test_flux_analysis/test_reaction.py . [ 47%] tests/test_flux_analysis/test_room.py .... [ 47%] tests/test_flux_analysis/test_variability.py ....... [ 49%] tests/test_flux_analysis/test_deletion.py sss [ 49%] tests/test_flux_analysis/test_moma.py s [ 49%] tests/test_flux_analysis/test_deletion.py ...... [ 50%] tests/test_flux_analysis/test_gapfilling.py . [ 50%] tests/test_flux_analysis/test_helpers.py ... [ 51%] tests/test_flux_analysis/test_loopless.py ..... [ 52%] tests/test_flux_analysis/test_phenotype_phase_plane.py ...... [ 53%] tests/test_flux_analysis/test_variability.py ....... [ 54%] tests/test_io/test_annotation.py .. [ 55%] tests/test_io/test_annotation_format.py .. [ 55%] tests/test_io/test_io_order.py ........................... [ 60%] tests/test_io/test_json.py .... [ 61%] tests/test_io/test_mat.py ............... [ 63%] tests/test_io/test_notes.py . [ 64%] tests/test_io/test_pickle.py .. [ 64%] tests/test_io/test_sbml.py .ssss............xxxx.x.x..s............. [ 71%] tests/test_io/test_web/test_load.py ..ssss. [ 73%] tests/test_io/test_yaml.py .x [ 73%] tests/test_manipulation/test_annotate.py . [ 73%] tests/test_manipulation/test_delete.py ....... [ 74%] tests/test_manipulation/test_modify.py ... [ 75%] tests/test_manipulation/test_validate.py .. [ 75%] tests/test_medium/test_boundary_types.py ........... [ 77%] tests/test_medium/test_minimal_medium.py .......... [ 79%] tests/test_sampling/test_achr.py ...... [ 80%] tests/test_sampling/test_optgp.py ...... [ 81%] tests/test_sampling/test_sampling.py .......... [ 83%] tests/test_summary/test_metabolite_summary.py ................. [ 86%] tests/test_summary/test_model_summary.py ............... [ 89%] tests/test_summary/test_reaction_summary.py .................... [ 92%] tests/test_util/test_array.py .. [ 93%] tests/test_util/test_context.py ... [ 93%] tests/test_util/test_process_pool.py ............... [ 96%] tests/test_util/test_solver.py ..............s [ 99%] tests/test_util/test_util.py ...x [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_and_gpr[a AND b-2-gpr_genes2-a and b] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_and_b_strs] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a AND b'. warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_or_gpr[a OR b-2-gpr_genes2-a or b] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_as_symbolic_boolean[a OR b-symbolic_gpr2] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_or_b_strs] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_from_symbolic[a OR b-symbolic_gpr5] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a OR b'. warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_complicated_gpr[(a OR b) AND c] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_as_symbolic_boolean[(a OR b) AND c-symbolic_gpr6] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_or_and_strs] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists8] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists9] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_from_symbolic[(a OR b) AND c-symbolic_gpr9] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule '(a OR b) AND c'. warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_that_needs_two_replacements /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule '(591001.3.peg.1891 AND 591001.3.peg.1892 AND 591001.3.peg.1893)'. warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_and_b_strs] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'b AND a'. warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_or_b_strs] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'b OR a'. warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_or_strs] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists7] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists8] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a OR b or c'. warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_and_strs] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists7] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists9] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a AND b and c'. warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_model.py::test_reaction_delete .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_model.py::test_reaction_delete /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/reaction.py:879: DeprecationWarning: delete is deprecated. Use reaction.remove_from_model instead warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_model.py::test_group_loss_of_elements .pybuild/cpython3_3.12_cobra/build/tests/test_flux_analysis/test_gapfilling.py::test_gapfilling /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/group.py:147: UserWarning: need to pass in a list warn("need to pass in a list") .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_model.py::test_change_objective .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_model.py::test_change_objective .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_model.py::test_change_objective /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/reaction.py:761: DeprecationWarning: Please use reaction.flux instead. warn("Please use reaction.flux instead.", DeprecationWarning) .pybuild/cpython3_3.12_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion .pybuild/cpython3_3.12_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/tests/test_flux_analysis/test_deletion.py:437: FutureWarning: Calling float on a single element Series is deprecated and will raise a TypeError in the future. Use float(ser.iloc[0]) instead assert math.isnan(sol.growth) .pybuild/cpython3_3.12_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion .pybuild/cpython3_3.12_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/tests/test_flux_analysis/test_deletion.py:438: FutureWarning: Calling float on a single element Series is deprecated and will raise a TypeError in the future. Use float(ser.iloc[0]) instead assert math.isnan(sol_one.growth) .pybuild/cpython3_3.12_cobra/build/tests/test_io/test_json.py: 1 warning .pybuild/cpython3_3.12_cobra/build/tests/test_io/test_mat.py: 5 warnings .pybuild/cpython3_3.12_cobra/build/tests/test_io/test_pickle.py: 1 warning .pybuild/cpython3_3.12_cobra/build/tests/test_io/test_sbml.py: 9 warnings .pybuild/cpython3_3.12_cobra/build/tests/test_io/test_yaml.py: 1 warning /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/solver.py:554: UserWarning: Solver status is 'infeasible'. warn(f"Solver status is '{status}'.", UserWarning) .pybuild/cpython3_3.12_cobra/build/tests/test_io/test_yaml.py::test_save_yaml_model /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/tests/test_io/test_yaml.py:29: PendingDeprecationWarning: you should no longer specify 'unsafe'. For **dumping only** use yaml=YAML(typ='full') yaml = YAML(typ="unsafe") .pybuild/cpython3_3.12_cobra/build/tests/test_medium/test_boundary_types.py::test_find_external_compartment_multi .pybuild/cpython3_3.12_cobra/build/tests/test_medium/test_boundary_types.py::test_find_external_compartment_multi .pybuild/cpython3_3.12_cobra/build/tests/test_medium/test_boundary_types.py::test_find_external_compartment_multi /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/boundary_types.py:74: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` compartment = most[matches[most]][0] .pybuild/cpython3_3.12_cobra/build/tests/test_util/test_process_pool.py::test_with_context /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/process_pool.py:71: PytestMockWarning: Mocks returned by pytest-mock do not need to be used as context managers. The mocker fixture automatically undoes mocking at the end of a test. This warning can be ignored if it was triggered by mocking a context manager. https://pytest-mock.readthedocs.io/en/latest/remarks.html#usage-as-context-manager self._pool.__enter__() -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ------------------------------------------------------------------------------------------------------------------------ benchmark: 31 tests ------------------------------------------------------------------------------------------------------------------------ Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- test_subtract_metabolite_benchmark[gurobi] 7.6457 (1.0) 57.0090 (1.17) 10.5488 (1.0) 3.0840 (1.52) 11.1826 (1.0) 3.8669 (4.93) 94;13 94,797.2844 (1.0) 2158 1 test_subtract_metabolite_benchmark[cplex] 9.0473 (1.18) 48.7692 (1.0) 11.5500 (1.09) 2.0352 (1.0) 11.2751 (1.01) 0.8380 (1.07) 44;117 86,580.0678 (0.91) 2308 1 test_subtract_metabolite_benchmark[glpk] 9.3621 (1.22) 55.0770 (1.13) 11.7623 (1.12) 2.2429 (1.10) 11.4841 (1.03) 0.7843 (1.0) 36;168 85,017.1551 (0.90) 2137 1 test_achr_sample_benchmark 347.1370 (45.40) 662.0260 (13.57) 386.0498 (36.60) 52.5824 (25.84) 356.2248 (31.86) 50.6910 (64.63) 154;89 2,590.3391 (0.03) 911 1 test_change_objective_benchmark[optlang-glpk] 403.3600 (52.76) 5,105.6598 (104.69) 473.2916 (44.87) 159.4529 (78.35) 454.4996 (40.64) 51.1277 (65.19) 39;82 2,112.8626 (0.02) 2154 1 test_optgp_sample_benchmark 535.2544 (70.01) 880.5790 (18.06) 576.9892 (54.70) 65.1220 (32.00) 544.4288 (48.69) 41.1526 (52.47) 75;74 1,733.1346 (0.02) 627 1 test_loopless_benchmark_after 1,800.6703 (235.51) 3,048.5508 (62.51) 1,880.6099 (178.28) 152.7458 (75.05) 1,844.9142 (164.98) 58.8850 (75.08) 8;12 531.7424 (0.01) 193 1 test_loopless_benchmark_before 10,359.0502 (>1000.0) 15,209.8523 (311.87) 10,951.5315 (>1000.0) 839.0398 (412.27) 10,700.2868 (956.87) 500.3258 (637.93) 3;3 91.3114 (0.00) 52 1 test_minimal_medium_mip_benchmark 10,544.5320 (>1000.0) 15,840.3069 (324.80) 13,018.2346 (>1000.0) 1,367.6249 (672.00) 13,297.7259 (>1000.0) 1,382.6955 (>1000.0) 16;1 76.8153 (0.00) 44 1 test_minimal_medium_linear_benchmark 10,680.6429 (>1000.0) 14,094.7951 (289.01) 12,020.7032 (>1000.0) 1,067.2715 (524.42) 12,286.1338 (>1000.0) 1,970.6541 (>1000.0) 15;0 83.1898 (0.00) 32 1 test_gpr_equality_benchmark 44,063.5099 (>1000.0) 59,084.3363 (>1000.0) 47,387.4122 (>1000.0) 4,052.5560 (>1000.0) 45,974.5079 (>1000.0) 2,075.2558 (>1000.0) 3;3 21.1027 (0.00) 20 1 test_deepcopy_benchmark 50,980.7267 (>1000.0) 63,244.7931 (>1000.0) 56,806.3673 (>1000.0) 2,893.4690 (>1000.0) 56,450.3290 (>1000.0) 1,779.8352 (>1000.0) 4;4 17.6037 (0.00) 18 1 test_single_reaction_deletion_benchmark[glpk] 51,398.4971 (>1000.0) 68,386.7862 (>1000.0) 56,453.6099 (>1000.0) 4,117.8792 (>1000.0) 56,031.5254 (>1000.0) 4,292.4304 (>1000.0) 4;1 17.7137 (0.00) 18 1 test_copy_benchmark[optlang-glpk] 109,116.9869 (>1000.0) 458,385.8359 (>1000.0) 244,798.9987 (>1000.0) 152,935.5325 (>1000.0) 177,574.4616 (>1000.0) 290,249.3346 (>1000.0) 2;0 4.0850 (0.00) 6 1 test_add_metabolite_benchmark[gurobi] 136,397.8824 (>1000.0) 140,724.4550 (>1000.0) 137,825.9288 (>1000.0) 1,729.8159 (849.97) 136,913.6530 (>1000.0) 2,661.8072 (>1000.0) 2;0 7.2555 (0.00) 7 1 test_add_metabolite_benchmark[glpk] 137,010.5068 (>1000.0) 147,802.1378 (>1000.0) 141,867.6376 (>1000.0) 4,465.7321 (>1000.0) 139,924.3311 (>1000.0) 8,341.5321 (>1000.0) 3;0 7.0488 (0.00) 7 1 test_fastcc_benchmark[glpk] 138,416.0612 (>1000.0) 658,591.9247 (>1000.0) 308,016.8810 (>1000.0) 203,701.6058 (>1000.0) 249,944.1660 (>1000.0) 270,627.6560 (>1000.0) 1;0 3.2466 (0.00) 6 1 test_add_metabolite_benchmark[cplex] 171,846.4461 (>1000.0) 175,272.5933 (>1000.0) 173,556.0061 (>1000.0) 1,377.1972 (676.70) 173,950.5597 (>1000.0) 2,413.2119 (>1000.0) 3;0 5.7618 (0.00) 6 1 test_achr_init_benchmark 177,509.7582 (>1000.0) 185,329.8852 (>1000.0) 180,238.1645 (>1000.0) 3,064.1115 (>1000.0) 179,219.8892 (>1000.0) 4,427.8288 (>1000.0) 1;0 5.5482 (0.00) 6 1 test_optgp_init_benchmark 218,516.3130 (>1000.0) 227,915.5049 (>1000.0) 223,559.9052 (>1000.0) 4,033.7356 (>1000.0) 222,750.2479 (>1000.0) 6,960.6815 (>1000.0) 2;0 4.4731 (0.00) 5 1 test_flux_variability_loopless_benchmark[glpk] 324,851.7392 (>1000.0) 344,478.4270 (>1000.0) 332,040.2087 (>1000.0) 7,478.4689 (>1000.0) 331,345.0660 (>1000.0) 7,604.8335 (>1000.0) 1;0 3.0117 (0.00) 5 1 test_gpr_symbolism_benchmark 337,413.4679 (>1000.0) 380,493.6050 (>1000.0) 353,442.6110 (>1000.0) 17,128.2425 (>1000.0) 346,861.2852 (>1000.0) 22,939.6517 (>1000.0) 1;0 2.8293 (0.00) 5 1 test_double_gene_deletion_benchmark 397,835.1681 (>1000.0) 426,258.2208 (>1000.0) 412,484.3258 (>1000.0) 12,200.1140 (>1000.0) 412,954.7267 (>1000.0) 21,754.7776 (>1000.0) 2;0 2.4243 (0.00) 5 1 test_single_gene_deletion_linear_moma_benchmark[glpk] 540,711.3219 (>1000.0) 632,990.7076 (>1000.0) 599,287.5959 (>1000.0) 34,810.4356 (>1000.0) 606,655.8291 (>1000.0) 32,100.0437 (>1000.0) 1;0 1.6686 (0.00) 5 1 test_pfba_benchmark[glpk] 556,121.8280 (>1000.0) 1,045,414.4911 (>1000.0) 696,161.5210 (>1000.0) 198,214.9433 (>1000.0) 635,721.0050 (>1000.0) 153,213.3190 (>1000.0) 1;1 1.4364 (0.00) 5 1 test_single_gene_deletion_linear_room_benchmark[glpk] 570,935.1394 (>1000.0) 668,830.8762 (>1000.0) 623,098.2012 (>1000.0) 35,597.9552 (>1000.0) 623,824.4143 (>1000.0) 40,891.8739 (>1000.0) 2;0 1.6049 (0.00) 5 1 test_single_gene_deletion_fba_benchmark[glpk] 639,613.9390 (>1000.0) 832,061.5590 (>1000.0) 703,230.8982 (>1000.0) 83,800.3320 (>1000.0) 660,154.5946 (>1000.0) 125,655.7086 (>1000.0) 1;0 1.4220 (0.00) 5 1 test_flux_variability_benchmark[glpk] 694,828.6551 (>1000.0) 719,677.6127 (>1000.0) 709,889.3341 (>1000.0) 11,294.3069 (>1000.0) 714,168.4243 (>1000.0) 19,992.9491 (>1000.0) 1;0 1.4087 (0.00) 5 1 test_copy_benchmark_large_model[optlang-glpk] 783,181.2352 (>1000.0) 2,038,552.8659 (>1000.0) 1,380,188.8172 (>1000.0) 490,526.5465 (>1000.0) 1,484,889.9199 (>1000.0) 721,685.7339 (>1000.0) 2;0 0.7245 (0.00) 5 1 test_geometric_fba_benchmark[glpk] 858,612.6198 (>1000.0) 1,056,652.2568 (>1000.0) 923,327.4749 (>1000.0) 77,737.3408 (>1000.0) 892,725.5580 (>1000.0) 74,386.5167 (>1000.0) 1;0 1.0830 (0.00) 5 1 test_double_reaction_deletion_benchmark 1,080,645.9622 (>1000.0) 1,327,344.5200 (>1000.0) 1,198,817.0484 (>1000.0) 90,535.5795 (>1000.0) 1,185,022.6368 (>1000.0) 110,359.4293 (>1000.0) 2;0 0.8342 (0.00) 5 1 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Legend: Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile. OPS: Operations Per Second, computed as 1 / Mean ===== 515 passed, 27 skipped, 11 xfailed, 76 warnings in 284.29s (0:04:44) ===== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/sbml.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/json.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/dict.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/mat.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/yaml.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/load.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/bigg_models_repository.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/cobrapy_repository.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/biomodels_repository.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/abstract_model_repository.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/__pycache__/exceptions.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/__pycache__ creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/reaction.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__pycache__/annotations.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/validate.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/modify.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/delete.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__pycache__/model_summary.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__pycache__/reaction_summary.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__pycache__/summary.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__pycache__/metabolite_summary.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/species.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/reaction.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/gene.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/singleton.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/dictlist.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/metabolite.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/formula.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/group.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/configuration.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/solution.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/model.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/object.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/core.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/optgp.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/achr.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/sampling.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/solver.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/context.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/array.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/util.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/process_pool.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/.benchmarks byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/json.py to json.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/dict.py to dict.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/mat.py to mat.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/sbml.py to sbml.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/yaml.py to yaml.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/load.py to load.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/cobrapy_repository.py to cobrapy_repository.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/biomodels_repository.py to biomodels_repository.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/bigg_models_repository.py to bigg_models_repository.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/room.py to room.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/annotations.py to annotations.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/exceptions.py to exceptions.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/modify.py to modify.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/delete.py to delete.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/validate.py to validate.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/model_summary.py to model_summary.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/summary.py to summary.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/metabolite.py to metabolite.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/model.py to model.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/solution.py to solution.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/formula.py to formula.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/gene.py to gene.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/dictlist.py to dictlist.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/object.py to object.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/species.py to species.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/configuration.py to configuration.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/group.py to group.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/singleton.py to singleton.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/reaction.py to reaction.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/optgp.py to optgp.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/core.py to core.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/sampling.py to sampling.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/achr.py to achr.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/process_pool.py to process_pool.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/solver.py to solver.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/context.py to context.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/array.py to array.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/util.py to util.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating src/cobra.egg-info writing src/cobra.egg-info/PKG-INFO writing dependency_links to src/cobra.egg-info/dependency_links.txt writing requirements to src/cobra.egg-info/requires.txt writing top-level names to src/cobra.egg-info/top_level.txt writing manifest file 'src/cobra.egg-info/SOURCES.txt' reading manifest file 'src/cobra.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'src/cobra.egg-info/SOURCES.txt' Copying src/cobra.egg-info to /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra-0.29.1.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/python-cobra-0.29.1' dh_install -X update_pickles.py --package=python-cobra-data dh_install --remaining-packages find debian -name __pycache__ | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/python-cobra-0.29.1' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:316: Cannot find package that provides python_libsbml. Please add package that provides it to Build-Depends or add "python_libsbml python3-libsbml" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python-cobra-data' in '../python-cobra-data_0.29.1-1_all.deb'. dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.29.1-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../python-cobra_0.29.1-1_amd64.buildinfo dpkg-genchanges --build=binary -O../python-cobra_0.29.1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1912494 and its subdirectories I: Current time: Sat Jan 4 21:21:57 -12 2025 I: pbuilder-time-stamp: 1736068917 Sun Jan 5 09:22:00 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Sun Jan 5 09:22:00 UTC 2025 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Sun Jan 5 09:26:39 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Sun Jan 5 09:26:39 UTC 2025 I: python-cobra_0.29.1-1_amd64.changes: Format: 1.8 Date: Sun, 22 Sep 2024 14:54:56 +0200 Source: python-cobra Binary: python-cobra-data python3-cobra Architecture: all amd64 Version: 0.29.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alexandre Detiste Description: python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-based modeling of biological networks with Python 3 Closes: 1067989 Changes: python-cobra (0.29.1-1) unstable; urgency=medium . * Team upload. * New upstream version 0.29.1 * Add a patch to replace appdirs with platformdirs (Closes: #1067989) Checksums-Sha1: 8f371718329e41e49c4b2c249c9ad5dcf0ebbaeb 1436992 python-cobra-data_0.29.1-1_all.deb a91ceeddefef803157a5c370af4cf6cf985d0be8 11285 python-cobra_0.29.1-1_amd64.buildinfo 3ffd468623a72b7f7911520e5481935b3ee48646 1119236 python3-cobra_0.29.1-1_amd64.deb Checksums-Sha256: ce2b19fef8a9e804ceaf9bdf64085fb589fde5b610eed8113212d29c20ac447a 1436992 python-cobra-data_0.29.1-1_all.deb 86667d8dfaf9aa6c18dba3c280140d42bcd41a11ce05e26463a370faf48912e2 11285 python-cobra_0.29.1-1_amd64.buildinfo ef5f54c3547145e50a549a78b4977494290bf100e2b7fe34480c5a0b4386eab2 1119236 python3-cobra_0.29.1-1_amd64.deb Files: 8007c5a8dccaf1d14c00c56aeaf4feb0 1436992 python optional python-cobra-data_0.29.1-1_all.deb fd5188805a567fe2173d0c153a8d5fc6 11285 python optional python-cobra_0.29.1-1_amd64.buildinfo 4d48b6813dbb603a20ea4fd8ad145ff3 1119236 python optional python3-cobra_0.29.1-1_amd64.deb Sun Jan 5 09:26:40 UTC 2025 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_17-27281.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.66Qqra80/python-cobra_0.29.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.66Qqra80/python-cobra_0.29.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.66Qqra80/python-cobra_0.29.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.66Qqra80/b1/python-cobra_0.29.1-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.66Qqra80/b2/python-cobra_0.29.1-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.350s) 0.350s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.035s) 0.035s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 639ms CPU time consumed: 638ms Sun Jan 5 09:26:41 UTC 2025 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Sun Jan 5 09:26:41 UTC 2025 I: python-cobra from unstable built successfully and reproducibly on amd64. Sun Jan 5 09:26:42 UTC 2025 I: Submitting .buildinfo files to external archives: Sun Jan 5 09:26:42 UTC 2025 I: Submitting 12K b1/python-cobra_0.29.1-1_amd64.buildinfo.asc Sun Jan 5 09:26:44 UTC 2025 I: Submitting 12K b2/python-cobra_0.29.1-1_amd64.buildinfo.asc Sun Jan 5 09:26:45 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Jan 5 09:26:45 UTC 2025 I: Done submitting .buildinfo files. Sun Jan 5 09:26:45 UTC 2025 I: Removing signed python-cobra_0.29.1-1_amd64.buildinfo.asc files: removed './b1/python-cobra_0.29.1-1_amd64.buildinfo.asc' removed './b2/python-cobra_0.29.1-1_amd64.buildinfo.asc'