Wed Sep 11 18:00:15 UTC 2024 I: starting to build python-bioregistry/unstable/amd64 on jenkins on '2024-09-11 18:00' Wed Sep 11 18:00:15 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_38/25369/console.log Wed Sep 11 18:00:15 UTC 2024 I: Downloading source for unstable/python-bioregistry=0.11.12-3 --2024-09-11 18:00:15-- http://deb.debian.org/debian/pool/main/p/python-bioregistry/python-bioregistry_0.11.12-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2627 (2.6K) [text/prs.lines.tag] Saving to: ‘python-bioregistry_0.11.12-3.dsc’ 0K .. 100% 341M=0s 2024-09-11 18:00:15 (341 MB/s) - ‘python-bioregistry_0.11.12-3.dsc’ saved [2627/2627] Wed Sep 11 18:00:16 UTC 2024 I: python-bioregistry_0.11.12-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-bioregistry Binary: python3-bioregistry Architecture: all Version: 0.11.12-3 Maintainer: Debian Med Packaging Team Uploaders: Alexandre Detiste , Homepage: https://bioregistry.io/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/bioregistry Vcs-Git: https://salsa.debian.org/med-team/bioregistry.git Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all, python3-bs4 , python3-click , python3-curies , python3-defusedxml , python3-fastapi , python3-flask-bootstrap , python3-httpx , python3-markdown , python3-more-itertools , python3-pandas , python3-pydantic , python3-pystow, python3-pytest , python3-rdflib , python3-rdflib-endpoint , python3-setuptools, python3-tabulate , python3-tqdm , python3-yaml Package-List: python3-bioregistry deb python optional arch=all Checksums-Sha1: 2a8f5269a839b037e7f0c321677b2271618c85ea 5989328 python-bioregistry_0.11.12.orig.tar.gz 63fdbd885eff7b5c299bee29a20c6b4bda945325 7760 python-bioregistry_0.11.12-3.debian.tar.xz Checksums-Sha256: e93b317d9e0e864c1f7719ca878890fd485e47e0af41e750e36a2c4ea7388c7c 5989328 python-bioregistry_0.11.12.orig.tar.gz fd8ba2d0ea805ef9fd8d8f39883673858909ec5af544ea1c66a22b3838e60ade 7760 python-bioregistry_0.11.12-3.debian.tar.xz Files: 1a4a59b870fcadb106a7391e7ddd2a6d 5989328 python-bioregistry_0.11.12.orig.tar.gz 5990ace29827a44c018ba01a315a8283 7760 python-bioregistry_0.11.12-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmbhduARHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBrIVw/7BSJnz4VHFoO7c/XAcSZq35O62lDZT9yD hjxON6zHautT+uBKnzys8Qe1hbvfxo5rx0PhCKdQbAfWt4ZFZ5m5agSoMDX7ZSRv fMqoC4iSaaeyW+MrIQwD+eP0G0MAI+fjGSOqN389tg/E+AAlvN0lAJKq+AnHgPhC RDkhJJlFPAyVbQiPQGJVc1zdzGpj+mOXaX56Qg9dwi26kKM7u7/mJjm0X6s/HJAZ RI4RcVJqKmaMhEsgUIhlt4FJNEN9gJ9OX4hOo8rbQxMB1wXoGSHBtWRkHMSt9HHC TgY8wOZS7zd72ywVbORoSXBzZdfNmrj+9hjNqGmC/3J0PenX0FA88Xhr2MILlw5f 4Y1QWgrUcfm4V3nj5QUOF1BBhrqSW+Y71lqFHdTauztTtAKW9WtrFkVJpRLszG6X 12r9ZL0t6bhdYMCUzaKM4f7endmwMaIUnjqPL0V5e/ofSkOwxN48aXscMnRA1pM4 IxkXqfapzjQJiOuS0Ia+bf8VLJC7yTrz47ysos1Io6n54Xx7ZEapl41lQjw/+Qbi d2vxIQPmQLNK+FVYCX5ZXVQ+fJK2gq3ZakvSJpUoP8gzhEs7QII17PgbBXtQvspS L4xU/kB4+142V2JoHDQvFBoQ6YD+sGfNs0eANILM8FdYXL8nvD1LMGnEVk7OErgs dnuAod/Dywg= =qhzq -----END PGP SIGNATURE----- Wed Sep 11 18:00:16 UTC 2024 I: Checking whether the package is not for us Wed Sep 11 18:00:16 UTC 2024 I: Starting 1st build on remote node infom02-amd64.debian.net. Wed Sep 11 18:00:16 UTC 2024 I: Preparing to do remote build '1' on infom02-amd64.debian.net. Wed Sep 11 18:05:49 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Oct 14 12:23:19 -12 2025 I: pbuilder-time-stamp: 1760487799 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-bioregistry_0.11.12-3.dsc] I: copying [./python-bioregistry_0.11.12.orig.tar.gz] I: copying [./python-bioregistry_0.11.12-3.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Sep 11 10:54:24 2024 gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A gpgv: issuer "tchet@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-bioregistry_0.11.12-3.dsc: no acceptable signature found dpkg-source: info: extracting python-bioregistry in python-bioregistry-0.11.12 dpkg-source: info: unpacking python-bioregistry_0.11.12.orig.tar.gz dpkg-source: info: unpacking python-bioregistry_0.11.12-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying privacy-breach.patch dpkg-source: info: applying vendor_more_click.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3705844/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='8ecc26d73aba42cab261024033905409' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3705844' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tNuxSUxH/pbuilderrc_4hj8 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tNuxSUxH/b1 --logfile b1/build.log python-bioregistry_0.11.12-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom02-amd64 6.10.6+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.6-1~bpo12+1 (2024-08-26) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3705844/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all, python3-bs4, python3-click, python3-curies, python3-defusedxml, python3-fastapi, python3-flask-bootstrap, python3-httpx, python3-markdown, python3-more-itertools, python3-pandas, python3-pydantic, python3-pystow, python3-pytest, python3-rdflib, python3-rdflib-endpoint, python3-setuptools, python3-tabulate, python3-tqdm, python3-yaml dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19781 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-bs4; however: Package python3-bs4 is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. pbuilder-satisfydepends-dummy depends on python3-curies; however: Package python3-curies is not installed. pbuilder-satisfydepends-dummy depends on python3-defusedxml; however: Package python3-defusedxml is not installed. pbuilder-satisfydepends-dummy depends on python3-fastapi; however: Package python3-fastapi is not installed. pbuilder-satisfydepends-dummy depends on python3-flask-bootstrap; however: Package python3-flask-bootstrap is not installed. pbuilder-satisfydepends-dummy depends on python3-httpx; however: Package python3-httpx is not installed. pbuilder-satisfydepends-dummy depends on python3-markdown; however: Package python3-markdown is not installed. pbuilder-satisfydepends-dummy depends on python3-more-itertools; however: Package python3-more-itertools is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pydantic; however: Package python3-pydantic is not installed. pbuilder-satisfydepends-dummy depends on python3-pystow; however: Package python3-pystow is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-rdflib; however: Package python3-rdflib is not installed. pbuilder-satisfydepends-dummy depends on python3-rdflib-endpoint; however: Package python3-rdflib-endpoint is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate; however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-tqdm; however: Package python3-tqdm is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-annotated-types{a} python3-anyio{a} python3-autocommand{a} python3-blinker{a} python3-bs4{a} python3-build{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-curies{a} python3-dateutil{a} python3-defusedxml{a} python3-dnspython{a} python3-email-validator{a} python3-fastapi{a} python3-flask{a} python3-flask-bootstrap{a} python3-h11{a} python3-httpcore{a} python3-httpx{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-isodate{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jinja2{a} python3-markdown{a} python3-markdown-it{a} python3-markupsafe{a} python3-mdurl{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-pluggy{a} python3-pydantic{a} python3-pydantic-core{a} python3-pygments{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pystow{a} python3-pytest{a} python3-rdflib{a} python3-rdflib-endpoint{a} python3-requests{a} python3-rich{a} python3-setuptools{a} python3-six{a} python3-sniffio{a} python3-sortedcontainers{a} python3-soupsieve{a} python3-starlette{a} python3-tabulate{a} python3-toml{a} python3-tqdm{a} python3-trie{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3-uvicorn{a} python3-uvloop{a} python3-werkzeug{a} python3-wheel{a} python3-wsproto{a} python3-wtforms{a} python3-yaml{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-aiofiles python3-asgiref python3-babel python3-bottleneck python3-cryptography python3-dotenv python3-h2 python3-html5lib python3-lxml python3-matplotlib python3-multipart python3-numba python3-numexpr python3-odf python3-openpyxl python3-openssl python3-pyinotify python3-scipy python3-simplejson python3-sparqlwrapper python3-tables wget 0 packages upgraded, 137 newly installed, 0 to remove and 0 not upgraded. Need to get 53.4 MB of archives. After unpacking 255 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.6-1 [814 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.3-1 [105 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.6-1 [2168 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.5-1 [26.7 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 12 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b2 [40.3 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.6-1 [1963 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.6-1 [669 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.5-1 [9588 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.5-1 [27.6 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.2-1 [1381 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-8 [97.3 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 46 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.4.0-1 [63.7 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-1 [42.2 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.0.2-1 [11.7 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.20.1-1 [10.2 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 74.1.2-2 [736 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20240824 [109 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-4 [837 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.48.0-6 [148 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-1+b1 [52.6 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.1-1 [45.8 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-hooks all 1.1.0-2 [11.3 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.44.0-2 [53.4 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 python3-build all 1.2.1-1 [34.1 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 pybuild-plugin-pyproject all 6.20240824 [11.2 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.12.5-1 [1044 B] Get: 79 http://deb.debian.org/debian unstable/main amd64 python3-annotated-types all 0.7.0-1 [18.8 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.6-2.1 [38.6 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 python3-sniffio all 1.3.1-1 [7120 B] Get: 82 http://deb.debian.org/debian unstable/main amd64 python3-anyio all 4.4.0-1 [57.3 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 python3-blinker all 1.8.2-1 [13.1 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 python3-soupsieve all 2.6-1 [38.3 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 python3-bs4 all 4.12.3-3 [133 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2024.8.30-1 [159 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.3.2-2 [116 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 python3-click all 8.1.7-2 [94.3 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 python3-pydantic-core amd64 2.20.1-1 [1472 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 python3-dnspython all 2.6.1-1 [161 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 python3-email-validator all 2.2.0-1 [31.6 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 python3-pydantic amd64 2.8.2-1 [331 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.0.7-2 [111 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 python3-sortedcontainers all 2.4.0-2 [31.9 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 python3-trie all 0.4.0+ds-1 [7640 B] Get: 99 http://deb.debian.org/debian unstable/main amd64 python3-curies all 0.7.10-3 [36.2 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 python3-six all 1.16.0-7 [16.4 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-2 [79.4 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-2 [43.3 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3-starlette all 0.38.2-1 [49.9 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3-h11 all 0.14.0-1 [50.1 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-wsproto all 1.2.0-1 [25.4 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-uvloop amd64 0.20.0+ds1-1 [544 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-uvicorn all 0.30.6-1 [49.6 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-fastapi all 0.110.0-1 [70.5 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 python3-itsdangerous all 2.2.0-1 [18.0 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 2.1.5-1+b1 [13.6 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 python3-werkzeug all 3.0.4-1 [207 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 python3-flask all 3.0.3-1 [104 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 python3-wtforms all 3.1.2-1 [66.2 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 python3-flask-bootstrap all 2.4.0+ds-1 [1092 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 python3-httpcore all 1.0.4-1 [44.5 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 python3-mdurl all 0.1.2-1 [9444 B] Get: 119 http://deb.debian.org/debian unstable/main amd64 python3-markdown-it all 3.0.0-2 [62.5 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 python3-rich all 13.7.1-1 [201 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 python3-httpx all 0.27.0-1 [76.8 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 123 http://deb.debian.org/debian unstable/main amd64 python3-isodate all 0.6.1-3 [24.9 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 python3-markdown all 3.7-1 [85.1 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:1.26.4+ds-11 [4236 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 python3-pandas-lib amd64 2.2.2+dfsg-4+b1 [4115 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 python3-pandas all 2.2.2+dfsg-4 [3095 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 python3-tqdm all 4.66.5-1 [90.1 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 python3-pystow all 0.5.5-1 [25.6 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.2-1 [249 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 python3-rdflib all 7.0.0-1 [444 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 python3-rdflib-endpoint all 0.5.1-2 [14.2 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 python3-yaml amd64 6.0.2-1 [134 kB] Fetched 53.4 MB in 1s (41.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19781 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.6-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.6-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.6-1_amd64.deb ... Unpacking python3.12-minimal (3.12.6-1) ... Setting up libpython3.12-minimal:amd64 (3.12.6-1) ... Setting up libexpat1:amd64 (2.6.3-1) ... Setting up python3.12-minimal (3.12.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20101 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.5-1_amd64.deb ... Unpacking python3-minimal (3.12.5-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.1-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-3_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.6-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.6-1_amd64.deb ... Unpacking python3.12 (3.12.6-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.5-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.5-1) ... Setting up python3-minimal (3.12.5-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21173 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.5-1_amd64.deb ... Unpacking python3 (3.12.5-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.3.2-1_amd64.deb ... Unpacking openssl (3.3.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.2-8_amd64.deb ... Unpacking bsdextrautils (2.40.2-8) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../011-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../014-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../015-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../016-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../017-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../018-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../019-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../020-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../021-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../022-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../023-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../024-libelf1t64_0.191-2_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../025-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../026-libicu72_72.1-5_amd64.deb ... Unpacking libicu72:amd64 (72.1-5) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../027-libxml2_2.12.7+dfsg-3+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg-3+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../028-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../029-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../030-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../031-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../032-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../033-python3-more-itertools_10.4.0-1_all.deb ... Unpacking python3-more-itertools (10.4.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../034-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../035-python3-typeguard_4.3.0-1_all.deb ... Unpacking python3-typeguard (4.3.0-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../036-python3-inflect_7.3.1-1_all.deb ... Unpacking python3-inflect (7.3.1-1) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../037-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. 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Setting up libelf1t64:amd64 (0.191-2) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Oct 15 00:24:07 UTC 2025. Universal Time is now: Wed Oct 15 00:24:07 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libgfortran5:amd64 (14.2.0-4) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.3.2-1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:amd64 (1.3.0-3+b2) ... Setting up libpython3.12-stdlib:amd64 (3.12.6-1) ... Setting up python3.12 (3.12.6-1) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:amd64 (3.12.5-1) ... Setting up python3 (3.12.5-1) ... Setting up python3-sortedcontainers (2.4.0-2) ... Setting up python3-zipp (3.20.1-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-markupsafe (2.1.5-1+b1) ... Setting up python3-wheel (0.44.0-2) ... Setting up python3-annotated-types (0.7.0-1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-7) ... Setting up python3-isodate (0.6.1-3) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.1-1) ... Setting up python3-pyproject-hooks (1.1.0-2) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2024.8.30-1) ... Setting up python3-werkzeug (3.0.4-1) ... Setting up python3-mdurl (0.1.2-1) ... Setting up python3-idna (3.6-2.1) ... Setting up python3-markdown (3.7-1) ... Setting up python3-h11 (0.14.0-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-uvloop (0.20.0+ds1-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-markdown-it (3.0.0-2) ... Setting up python3-dnspython (2.6.1-1) ... Setting up python3-rdflib (7.0.0-1) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-email-validator (2.2.0-1) ... Setting up python3-build (1.2.1-1) ... Setting up python3-trie (0.4.0+ds-1) ... Setting up python3-soupsieve (2.6-1) ... Setting up python3-blinker (1.8.2-1) ... Setting up python3-more-itertools (10.4.0-1) ... Setting up python3-httpcore (1.0.4-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sniffio (1.3.1-1) ... Setting up python3-pydantic-core (2.20.1-1) ... Setting up python3-jaraco.functools (4.0.2-1) ... Setting up python3-wsproto (1.2.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-anyio (4.4.0-1) ... Setting up python3-wtforms (3.1.2-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-defusedxml (0.7.1-2) ... Setting up python3-charset-normalizer (3.3.2-2) ... Setting up python3-pytest (8.3.2-1) ... Setting up python3-tqdm (4.66.5-1) ... Setting up python3-typeguard (4.3.0-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-itsdangerous (2.2.0-1) ... Setting up python3-all (3.12.5-1) ... Setting up python3-yaml (6.0.2-1) ... Setting up python3-starlette (0.38.2-1) ... Setting up python3-click (8.1.7-2) ... Setting up python3-bs4 (4.12.3-3) ... Setting up python3-inflect (7.3.1-1) ... Setting up python3-pydantic (2.8.2-1) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-uvicorn (0.30.6-1) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-flask (3.0.3-1) ... Setting up python3-flask-bootstrap (2.4.0+ds-1) ... Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-11) ... Setting up python3-pystow (0.5.5-1) ... Setting up python3-fastapi (0.110.0-1) ... Setting up python3-rdflib-endpoint (0.5.1-2) ... Setting up python3-curies (0.7.10-3) ... Setting up dh-python (6.20240824) ... Setting up python3-rich (13.7.1-1) ... Setting up pybuild-plugin-pyproject (6.20240824) ... Setting up python3-pandas-lib:amd64 (2.2.2+dfsg-4+b1) ... Setting up python3-pandas (2.2.2+dfsg-4) ... Setting up python3-httpx (0.27.0-1) ... Processing triggers for libc-bin (2.40-2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-bioregistry-0.11.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-bioregistry_0.11.12-3_source.changes dpkg-buildpackage: info: source package python-bioregistry dpkg-buildpackage: info: source version 0.11.12-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from python-bioregistry-0.11.12/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.12 * Building wheel... running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/bioregistry copying src/bioregistry/utils.py -> build/lib/bioregistry copying src/bioregistry/resolve.py -> build/lib/bioregistry copying src/bioregistry/resource_manager.py -> build/lib/bioregistry copying src/bioregistry/license_standardizer.py -> build/lib/bioregistry copying src/bioregistry/summary.py -> build/lib/bioregistry copying src/bioregistry/upload_ndex.py -> build/lib/bioregistry copying src/bioregistry/bibliometrics.py -> build/lib/bioregistry copying src/bioregistry/schema_utils.py -> build/lib/bioregistry copying src/bioregistry/lint.py -> build/lib/bioregistry copying src/bioregistry/pandas.py -> build/lib/bioregistry copying src/bioregistry/parse_version_iri.py -> build/lib/bioregistry copying src/bioregistry/metaresource_api.py -> build/lib/bioregistry copying src/bioregistry/compare.py -> build/lib/bioregistry copying src/bioregistry/__main__.py -> build/lib/bioregistry copying src/bioregistry/parse_iri.py -> build/lib/bioregistry copying src/bioregistry/resolve_identifier.py -> build/lib/bioregistry copying src/bioregistry/constants.py -> build/lib/bioregistry copying src/bioregistry/uri_format.py -> build/lib/bioregistry copying src/bioregistry/__init__.py -> build/lib/bioregistry copying src/bioregistry/cli.py -> build/lib/bioregistry copying src/bioregistry/collection_api.py -> build/lib/bioregistry copying src/bioregistry/record_accumulator.py -> build/lib/bioregistry copying src/bioregistry/version.py -> build/lib/bioregistry creating build/lib/bioregistry/app copying src/bioregistry/app/utils.py -> build/lib/bioregistry/app copying src/bioregistry/app/test.py -> build/lib/bioregistry/app copying src/bioregistry/app/wsgi.py -> build/lib/bioregistry/app copying src/bioregistry/app/ui.py -> build/lib/bioregistry/app copying src/bioregistry/app/impl.py -> build/lib/bioregistry/app copying src/bioregistry/app/constants.py -> build/lib/bioregistry/app copying src/bioregistry/app/__init__.py -> build/lib/bioregistry/app copying src/bioregistry/app/cli.py -> build/lib/bioregistry/app copying src/bioregistry/app/proxies.py -> build/lib/bioregistry/app copying src/bioregistry/app/api.py -> build/lib/bioregistry/app creating build/lib/bioregistry/gh copying src/bioregistry/gh/__init__.py -> build/lib/bioregistry/gh copying src/bioregistry/gh/new_prefix.py -> build/lib/bioregistry/gh copying src/bioregistry/gh/github_client.py -> build/lib/bioregistry/gh creating build/lib/bioregistry/export copying src/bioregistry/export/sssom_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/yaml_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/rdf_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/prefix_maps.py -> build/lib/bioregistry/export copying src/bioregistry/export/tables_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/__main__.py -> build/lib/bioregistry/export copying src/bioregistry/export/prefixcc.py -> build/lib/bioregistry/export copying src/bioregistry/export/warnings_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/tsv_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/__init__.py -> build/lib/bioregistry/export copying src/bioregistry/export/cli.py -> build/lib/bioregistry/export copying src/bioregistry/export/schema_export.py -> build/lib/bioregistry/export creating build/lib/bioregistry/analysis copying src/bioregistry/analysis/__init__.py -> build/lib/bioregistry/analysis copying src/bioregistry/analysis/paper_ranking.py -> build/lib/bioregistry/analysis copying src/bioregistry/analysis/bioregistry_diff.py -> build/lib/bioregistry/analysis creating build/lib/bioregistry/data copying src/bioregistry/data/__init__.py -> build/lib/bioregistry/data creating build/lib/bioregistry/curation copying src/bioregistry/curation/bulk_import.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_co_providers.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/clean_publications.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/rename_metaprefix.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/suggest_uniprot_providers.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_examples.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/map_re3data_via_fairsharing.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/map_bartoc_via_wikidata.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/import_pc_semiautomatic.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_examples_from_ols.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_ontology_regexes.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/make_description_curation_sheet.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/clean_licenses.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/enrich_publications.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/__init__.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/review_pc.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_examples_from_javert.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/fix_obo_purls.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/clean_name_suffixes.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_descriptions_from_gs.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/make_health_report_curation_sheet.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/cleanup_authors.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/deprecation_diff.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/suggest_author_curation.py -> build/lib/bioregistry/curation creating build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/uri_parsing.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/curie_validation.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/__main__.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/__init__.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/cli.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/curie_parsing.py -> build/lib/bioregistry/benchmarks creating build/lib/bioregistry/external copying src/bioregistry/external/align.py -> build/lib/bioregistry/external copying src/bioregistry/external/__init__.py -> build/lib/bioregistry/external copying src/bioregistry/external/alignment_utils.py -> build/lib/bioregistry/external creating build/lib/bioregistry/schema copying src/bioregistry/schema/utils.py -> build/lib/bioregistry/schema copying src/bioregistry/schema/struct.py -> build/lib/bioregistry/schema copying src/bioregistry/schema/constants.py -> build/lib/bioregistry/schema copying src/bioregistry/schema/__init__.py -> build/lib/bioregistry/schema creating build/lib/bioregistry/health copying src/bioregistry/health/__main__.py -> build/lib/bioregistry/health copying src/bioregistry/health/__init__.py -> build/lib/bioregistry/health copying src/bioregistry/health/cli.py -> build/lib/bioregistry/health copying src/bioregistry/health/check_homepages.py -> build/lib/bioregistry/health copying src/bioregistry/health/check_providers.py -> build/lib/bioregistry/health creating build/lib/bioregistry/external/ols copying src/bioregistry/external/ols/__init__.py -> build/lib/bioregistry/external/ols creating build/lib/bioregistry/external/cropoct copying src/bioregistry/external/cropoct/__init__.py -> build/lib/bioregistry/external/cropoct creating build/lib/bioregistry/external/n2t copying src/bioregistry/external/n2t/__init__.py -> build/lib/bioregistry/external/n2t creating build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/ecoportal.py -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/bioportal.py -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/agroportal.py -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/__init__.py -> build/lib/bioregistry/external/bioportal creating build/lib/bioregistry/external/hl7 copying src/bioregistry/external/hl7/__init__.py -> build/lib/bioregistry/external/hl7 creating build/lib/bioregistry/external/lov copying src/bioregistry/external/lov/__init__.py -> build/lib/bioregistry/external/lov creating build/lib/bioregistry/external/togoid copying src/bioregistry/external/togoid/__init__.py -> build/lib/bioregistry/external/togoid creating build/lib/bioregistry/external/biocontext copying src/bioregistry/external/biocontext/__init__.py -> build/lib/bioregistry/external/biocontext creating build/lib/bioregistry/external/wikidata copying src/bioregistry/external/wikidata/__init__.py -> build/lib/bioregistry/external/wikidata creating build/lib/bioregistry/external/re3data copying src/bioregistry/external/re3data/__init__.py -> build/lib/bioregistry/external/re3data creating build/lib/bioregistry/external/obofoundry copying src/bioregistry/external/obofoundry/__init__.py -> build/lib/bioregistry/external/obofoundry creating build/lib/bioregistry/external/go copying src/bioregistry/external/go/__init__.py -> build/lib/bioregistry/external/go creating build/lib/bioregistry/external/rrid copying src/bioregistry/external/rrid/__init__.py -> build/lib/bioregistry/external/rrid creating build/lib/bioregistry/external/bartoc copying src/bioregistry/external/bartoc/__init__.py -> build/lib/bioregistry/external/bartoc creating build/lib/bioregistry/external/ncbi copying src/bioregistry/external/ncbi/__init__.py -> build/lib/bioregistry/external/ncbi creating build/lib/bioregistry/external/edam copying src/bioregistry/external/edam/__init__.py -> build/lib/bioregistry/external/edam creating build/lib/bioregistry/external/uniprot copying src/bioregistry/external/uniprot/__init__.py -> build/lib/bioregistry/external/uniprot creating build/lib/bioregistry/external/miriam copying src/bioregistry/external/miriam/__init__.py -> build/lib/bioregistry/external/miriam creating build/lib/bioregistry/external/prefixcommons copying src/bioregistry/external/prefixcommons/__init__.py -> build/lib/bioregistry/external/prefixcommons creating build/lib/bioregistry/external/integbio copying src/bioregistry/external/integbio/__init__.py -> build/lib/bioregistry/external/integbio creating build/lib/bioregistry/external/zazuko copying src/bioregistry/external/zazuko/__init__.py -> build/lib/bioregistry/external/zazuko creating build/lib/bioregistry/external/aberowl copying src/bioregistry/external/aberowl/__init__.py -> build/lib/bioregistry/external/aberowl creating build/lib/bioregistry/external/cellosaurus copying src/bioregistry/external/cellosaurus/__init__.py -> build/lib/bioregistry/external/cellosaurus creating build/lib/bioregistry/external/ontobee copying src/bioregistry/external/ontobee/__init__.py -> build/lib/bioregistry/external/ontobee creating build/lib/bioregistry/external/biolink copying src/bioregistry/external/biolink/__init__.py -> build/lib/bioregistry/external/biolink creating build/lib/bioregistry/external/pathguide copying src/bioregistry/external/pathguide/__init__.py -> build/lib/bioregistry/external/pathguide creating build/lib/bioregistry/external/fairsharing copying src/bioregistry/external/fairsharing/__init__.py -> build/lib/bioregistry/external/fairsharing creating build/lib/bioregistry/external/cheminf copying src/bioregistry/external/cheminf/__init__.py -> build/lib/bioregistry/external/cheminf running egg_info creating src/bioregistry.egg-info writing src/bioregistry.egg-info/PKG-INFO writing dependency_links to src/bioregistry.egg-info/dependency_links.txt writing entry points to src/bioregistry.egg-info/entry_points.txt writing requirements to src/bioregistry.egg-info/requires.txt writing top-level names to src/bioregistry.egg-info/top_level.txt writing manifest file 'src/bioregistry.egg-info/SOURCES.txt' reading manifest file 'src/bioregistry.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'Makefile' under directory 'docs' warning: no previously-included files matching '*.png' found under directory 'docs/img' warning: no previously-included files matching '*.py[cod]' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.dylib' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.gpickle' found anywhere in distribution no previously-included directories found matching 'docs/build' no previously-included directories found matching 'docs/_data' no previously-included directories found matching 'docs/source/api' no previously-included directories found matching 'exports' no previously-included directories found matching 'notebooks' no previously-included directories found matching 'tests/.pytest_cache' warning: no previously-included files found matching 'docs/*.md' warning: no previously-included files found matching 'docs/guides/*.md' warning: no previously-included files found matching 'docs/_config.yml' warning: no previously-included files found matching '.appveyor.yml' warning: no previously-included files found matching '.bumpversion.cfg' warning: no previously-included files found matching '.coveragerc' warning: no previously-included files found matching '.flake8' warning: no previously-included files found matching '.travis.yml' warning: no previously-included files found matching '.readthedocs.yml' warning: no previously-included files found matching 'tox.ini' warning: no previously-included files found matching '.pre-commit-config.yaml' warning: no previously-included files found matching 'Dockerfile' warning: no previously-included files found matching 'CITATION.cff' warning: no files found matching '*.rst' adding license file 'LICENSE' writing manifest file 'src/bioregistry.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'bioregistry.app.static' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.static' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.static' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.static' to be distributed and are already explicitly excluding 'bioregistry.app.static' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'bioregistry.app.templates' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.templates' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.templates' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.templates' to be distributed and are already explicitly excluding 'bioregistry.app.templates' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'bioregistry.app.templates.highlights' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.templates.highlights' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.templates.highlights' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.templates.highlights' to be distributed and are already explicitly excluding 'bioregistry.app.templates.highlights' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'bioregistry.app.templates.meta' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.templates.meta' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.templates.meta' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.templates.meta' to be distributed and are already explicitly excluding 'bioregistry.app.templates.meta' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'bioregistry.app.templates.resolve_errors' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.templates.resolve_errors' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.templates.resolve_errors' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.templates.resolve_errors' to be distributed and are already explicitly excluding 'bioregistry.app.templates.resolve_errors' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying src/bioregistry/py.typed -> build/lib/bioregistry creating build/lib/bioregistry/app/static copying src/bioregistry/app/static/logo.svg -> build/lib/bioregistry/app/static creating build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/base.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/collection.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/collections.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/context.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/contexts.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/contributor.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/contributors.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/home.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/macros.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/metaresource.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/metaresources.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/prose.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/reference.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/resource.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/resources.html -> build/lib/bioregistry/app/templates creating build/lib/bioregistry/app/templates/highlights copying src/bioregistry/app/templates/highlights/keywords.html -> build/lib/bioregistry/app/templates/highlights copying src/bioregistry/app/templates/highlights/owners.html -> build/lib/bioregistry/app/templates/highlights copying src/bioregistry/app/templates/highlights/relations.html -> build/lib/bioregistry/app/templates/highlights copying src/bioregistry/app/templates/highlights/twitter.html -> build/lib/bioregistry/app/templates/highlights creating build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/access.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/acknowledgements.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/download.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/related.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/schema.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/summary.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/sustainability.html -> build/lib/bioregistry/app/templates/meta creating build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/disallowed_identifier.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/invalid_identifier.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/missing_prefix.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/missing_providers.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/analysis/paper_ranking_requirements.txt -> build/lib/bioregistry/analysis copying src/bioregistry/data/README.md -> build/lib/bioregistry/data copying src/bioregistry/data/bioregistry.json -> build/lib/bioregistry/data copying src/bioregistry/data/collections.json -> build/lib/bioregistry/data copying src/bioregistry/data/contexts.json -> build/lib/bioregistry/data copying src/bioregistry/data/metaregistry.json -> build/lib/bioregistry/data copying src/bioregistry/data/mismatch.json -> build/lib/bioregistry/data copying src/bioregistry/curation/curated_papers.csv -> build/lib/bioregistry/curation copying src/bioregistry/schema/schema.json -> build/lib/bioregistry/schema copying src/bioregistry/external/ols/processed.json -> build/lib/bioregistry/external/ols copying src/bioregistry/external/ols/processing_ols.json -> build/lib/bioregistry/external/ols copying src/bioregistry/external/cropoct/processed.json -> build/lib/bioregistry/external/cropoct copying src/bioregistry/external/n2t/processed.json -> build/lib/bioregistry/external/n2t copying src/bioregistry/external/bioportal/agroportal.json -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/bioportal.json -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/ecoportal.json -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/hl7/OID_Report.csv -> build/lib/bioregistry/external/hl7 copying src/bioregistry/external/lov/processed.json -> build/lib/bioregistry/external/lov copying src/bioregistry/external/togoid/processed.json -> build/lib/bioregistry/external/togoid copying src/bioregistry/external/biocontext/processed.json -> build/lib/bioregistry/external/biocontext copying src/bioregistry/external/wikidata/processed.json -> build/lib/bioregistry/external/wikidata copying src/bioregistry/external/re3data/processed.json -> build/lib/bioregistry/external/re3data copying src/bioregistry/external/obofoundry/processed.json -> build/lib/bioregistry/external/obofoundry copying src/bioregistry/external/go/processed.json -> build/lib/bioregistry/external/go copying src/bioregistry/external/go/processing_go.json -> build/lib/bioregistry/external/go copying src/bioregistry/external/bartoc/processed.json -> build/lib/bioregistry/external/bartoc copying src/bioregistry/external/ncbi/processed.json -> build/lib/bioregistry/external/ncbi copying src/bioregistry/external/edam/processed.json -> build/lib/bioregistry/external/edam copying src/bioregistry/external/uniprot/processed.json -> build/lib/bioregistry/external/uniprot copying src/bioregistry/external/miriam/processed.json -> build/lib/bioregistry/external/miriam copying src/bioregistry/external/prefixcommons/processed.json -> build/lib/bioregistry/external/prefixcommons copying src/bioregistry/external/integbio/processed.json -> build/lib/bioregistry/external/integbio copying src/bioregistry/external/zazuko/processed.json -> build/lib/bioregistry/external/zazuko copying src/bioregistry/external/aberowl/processed.json -> build/lib/bioregistry/external/aberowl copying src/bioregistry/external/cellosaurus/processed.json -> build/lib/bioregistry/external/cellosaurus copying src/bioregistry/external/ontobee/processed.json -> build/lib/bioregistry/external/ontobee copying src/bioregistry/external/biolink/processed.json -> build/lib/bioregistry/external/biolink copying src/bioregistry/external/biolink/processing_biolink.json -> build/lib/bioregistry/external/biolink copying src/bioregistry/external/fairsharing/processed.json -> build/lib/bioregistry/external/fairsharing copying src/bioregistry/external/cheminf/processed.json -> build/lib/bioregistry/external/cheminf installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/bioregistry creating build/bdist.linux-x86_64/wheel/bioregistry/app copying build/lib/bioregistry/app/utils.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app copying build/lib/bioregistry/app/test.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app creating build/bdist.linux-x86_64/wheel/bioregistry/app/templates creating build/bdist.linux-x86_64/wheel/bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/relations.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/twitter.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/owners.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/keywords.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/metaresources.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates creating build/bdist.linux-x86_64/wheel/bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/download.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/sustainability.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/related.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/schema.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/summary.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/access.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/acknowledgements.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/prose.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/base.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates creating build/bdist.linux-x86_64/wheel/bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/missing_providers.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/invalid_identifier.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/disallowed_identifier.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/missing_prefix.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/reference.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/collection.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/resources.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/macros.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/context.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/contexts.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/home.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/resource.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/collections.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/contributors.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/contributor.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/metaresource.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/wsgi.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app copying build/lib/bioregistry/app/ui.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app copying build/lib/bioregistry/app/impl.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app copying build/lib/bioregistry/app/constants.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app copying build/lib/bioregistry/app/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app copying build/lib/bioregistry/app/cli.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app copying build/lib/bioregistry/app/proxies.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app copying build/lib/bioregistry/app/api.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app creating build/bdist.linux-x86_64/wheel/bioregistry/app/static copying build/lib/bioregistry/app/static/logo.svg -> build/bdist.linux-x86_64/wheel/./bioregistry/app/static copying build/lib/bioregistry/utils.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/resolve.py -> build/bdist.linux-x86_64/wheel/./bioregistry creating build/bdist.linux-x86_64/wheel/bioregistry/gh copying build/lib/bioregistry/gh/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/gh copying build/lib/bioregistry/gh/new_prefix.py -> build/bdist.linux-x86_64/wheel/./bioregistry/gh copying build/lib/bioregistry/gh/github_client.py -> build/bdist.linux-x86_64/wheel/./bioregistry/gh creating build/bdist.linux-x86_64/wheel/bioregistry/export copying build/lib/bioregistry/export/sssom_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/export/yaml_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/export/rdf_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/export/prefix_maps.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/export/tables_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/export/__main__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/export/prefixcc.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/export/warnings_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/export/tsv_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/export/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/export/cli.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/export/schema_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/resource_manager.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/license_standardizer.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/summary.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/upload_ndex.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/bibliometrics.py -> build/bdist.linux-x86_64/wheel/./bioregistry creating build/bdist.linux-x86_64/wheel/bioregistry/analysis copying build/lib/bioregistry/analysis/paper_ranking_requirements.txt -> build/bdist.linux-x86_64/wheel/./bioregistry/analysis copying build/lib/bioregistry/analysis/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/analysis copying build/lib/bioregistry/analysis/paper_ranking.py -> build/bdist.linux-x86_64/wheel/./bioregistry/analysis copying build/lib/bioregistry/analysis/bioregistry_diff.py -> build/bdist.linux-x86_64/wheel/./bioregistry/analysis copying build/lib/bioregistry/schema_utils.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/lint.py -> build/bdist.linux-x86_64/wheel/./bioregistry creating build/bdist.linux-x86_64/wheel/bioregistry/data copying build/lib/bioregistry/data/mismatch.json -> build/bdist.linux-x86_64/wheel/./bioregistry/data copying build/lib/bioregistry/data/README.md -> build/bdist.linux-x86_64/wheel/./bioregistry/data copying build/lib/bioregistry/data/metaregistry.json -> build/bdist.linux-x86_64/wheel/./bioregistry/data copying build/lib/bioregistry/data/collections.json -> build/bdist.linux-x86_64/wheel/./bioregistry/data copying build/lib/bioregistry/data/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/data copying build/lib/bioregistry/data/bioregistry.json -> build/bdist.linux-x86_64/wheel/./bioregistry/data copying build/lib/bioregistry/data/contexts.json -> build/bdist.linux-x86_64/wheel/./bioregistry/data creating build/bdist.linux-x86_64/wheel/bioregistry/curation copying build/lib/bioregistry/curation/bulk_import.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_co_providers.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/clean_publications.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/rename_metaprefix.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/suggest_uniprot_providers.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_examples.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/map_re3data_via_fairsharing.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/map_bartoc_via_wikidata.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/import_pc_semiautomatic.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_examples_from_ols.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_ontology_regexes.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/make_description_curation_sheet.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/clean_licenses.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/enrich_publications.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/review_pc.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_examples_from_javert.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/fix_obo_purls.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/curated_papers.csv -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/clean_name_suffixes.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_descriptions_from_gs.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/make_health_report_curation_sheet.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/cleanup_authors.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/deprecation_diff.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/suggest_author_curation.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/pandas.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/parse_version_iri.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/metaresource_api.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/compare.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/__main__.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/parse_iri.py -> build/bdist.linux-x86_64/wheel/./bioregistry creating build/bdist.linux-x86_64/wheel/bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/uri_parsing.py -> build/bdist.linux-x86_64/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/curie_validation.py -> build/bdist.linux-x86_64/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/__main__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/cli.py -> build/bdist.linux-x86_64/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/curie_parsing.py -> build/bdist.linux-x86_64/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/resolve_identifier.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/constants.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/uri_format.py -> build/bdist.linux-x86_64/wheel/./bioregistry creating build/bdist.linux-x86_64/wheel/bioregistry/external creating build/bdist.linux-x86_64/wheel/bioregistry/external/ols copying build/lib/bioregistry/external/ols/processing_ols.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ols copying build/lib/bioregistry/external/ols/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ols copying build/lib/bioregistry/external/ols/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ols creating build/bdist.linux-x86_64/wheel/bioregistry/external/cropoct copying build/lib/bioregistry/external/cropoct/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/cropoct copying build/lib/bioregistry/external/cropoct/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/cropoct creating build/bdist.linux-x86_64/wheel/bioregistry/external/n2t copying build/lib/bioregistry/external/n2t/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/n2t copying build/lib/bioregistry/external/n2t/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/n2t creating build/bdist.linux-x86_64/wheel/bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/agroportal.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/ecoportal.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/ecoportal.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/bioportal.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/bioportal.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/agroportal.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bioportal creating build/bdist.linux-x86_64/wheel/bioregistry/external/hl7 copying build/lib/bioregistry/external/hl7/OID_Report.csv -> build/bdist.linux-x86_64/wheel/./bioregistry/external/hl7 copying build/lib/bioregistry/external/hl7/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/hl7 creating build/bdist.linux-x86_64/wheel/bioregistry/external/lov copying build/lib/bioregistry/external/lov/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/lov copying build/lib/bioregistry/external/lov/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/lov creating build/bdist.linux-x86_64/wheel/bioregistry/external/togoid copying build/lib/bioregistry/external/togoid/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/togoid copying build/lib/bioregistry/external/togoid/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/togoid creating build/bdist.linux-x86_64/wheel/bioregistry/external/biocontext copying build/lib/bioregistry/external/biocontext/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/biocontext copying build/lib/bioregistry/external/biocontext/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/biocontext creating build/bdist.linux-x86_64/wheel/bioregistry/external/wikidata copying build/lib/bioregistry/external/wikidata/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/wikidata copying build/lib/bioregistry/external/wikidata/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/wikidata creating build/bdist.linux-x86_64/wheel/bioregistry/external/re3data copying build/lib/bioregistry/external/re3data/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/re3data copying build/lib/bioregistry/external/re3data/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/re3data creating build/bdist.linux-x86_64/wheel/bioregistry/external/obofoundry copying build/lib/bioregistry/external/obofoundry/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/obofoundry copying build/lib/bioregistry/external/obofoundry/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/obofoundry creating build/bdist.linux-x86_64/wheel/bioregistry/external/go copying build/lib/bioregistry/external/go/processing_go.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/go copying build/lib/bioregistry/external/go/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/go copying build/lib/bioregistry/external/go/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/go creating build/bdist.linux-x86_64/wheel/bioregistry/external/rrid copying build/lib/bioregistry/external/rrid/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/rrid creating build/bdist.linux-x86_64/wheel/bioregistry/external/bartoc copying build/lib/bioregistry/external/bartoc/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bartoc copying build/lib/bioregistry/external/bartoc/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bartoc creating build/bdist.linux-x86_64/wheel/bioregistry/external/ncbi copying build/lib/bioregistry/external/ncbi/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ncbi copying build/lib/bioregistry/external/ncbi/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ncbi creating build/bdist.linux-x86_64/wheel/bioregistry/external/edam copying build/lib/bioregistry/external/edam/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/edam copying build/lib/bioregistry/external/edam/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/edam copying build/lib/bioregistry/external/align.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external creating build/bdist.linux-x86_64/wheel/bioregistry/external/uniprot copying build/lib/bioregistry/external/uniprot/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/uniprot copying build/lib/bioregistry/external/uniprot/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/uniprot creating build/bdist.linux-x86_64/wheel/bioregistry/external/miriam copying build/lib/bioregistry/external/miriam/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/miriam copying build/lib/bioregistry/external/miriam/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/miriam creating build/bdist.linux-x86_64/wheel/bioregistry/external/prefixcommons copying build/lib/bioregistry/external/prefixcommons/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/prefixcommons copying build/lib/bioregistry/external/prefixcommons/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/prefixcommons copying build/lib/bioregistry/external/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external creating build/bdist.linux-x86_64/wheel/bioregistry/external/integbio copying build/lib/bioregistry/external/integbio/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/integbio copying build/lib/bioregistry/external/integbio/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/integbio creating build/bdist.linux-x86_64/wheel/bioregistry/external/zazuko copying build/lib/bioregistry/external/zazuko/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/zazuko copying build/lib/bioregistry/external/zazuko/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/zazuko creating build/bdist.linux-x86_64/wheel/bioregistry/external/aberowl copying build/lib/bioregistry/external/aberowl/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/aberowl copying build/lib/bioregistry/external/aberowl/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/aberowl creating build/bdist.linux-x86_64/wheel/bioregistry/external/cellosaurus copying build/lib/bioregistry/external/cellosaurus/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/cellosaurus copying build/lib/bioregistry/external/cellosaurus/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/cellosaurus copying build/lib/bioregistry/external/alignment_utils.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external creating build/bdist.linux-x86_64/wheel/bioregistry/external/ontobee copying build/lib/bioregistry/external/ontobee/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ontobee copying build/lib/bioregistry/external/ontobee/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ontobee creating build/bdist.linux-x86_64/wheel/bioregistry/external/biolink copying build/lib/bioregistry/external/biolink/processing_biolink.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/biolink copying build/lib/bioregistry/external/biolink/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/biolink copying build/lib/bioregistry/external/biolink/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/biolink creating build/bdist.linux-x86_64/wheel/bioregistry/external/pathguide copying build/lib/bioregistry/external/pathguide/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/pathguide creating build/bdist.linux-x86_64/wheel/bioregistry/external/fairsharing copying build/lib/bioregistry/external/fairsharing/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/fairsharing copying build/lib/bioregistry/external/fairsharing/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/fairsharing creating build/bdist.linux-x86_64/wheel/bioregistry/external/cheminf copying build/lib/bioregistry/external/cheminf/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/cheminf copying build/lib/bioregistry/external/cheminf/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/cheminf copying build/lib/bioregistry/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/cli.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/collection_api.py -> build/bdist.linux-x86_64/wheel/./bioregistry creating build/bdist.linux-x86_64/wheel/bioregistry/schema copying build/lib/bioregistry/schema/utils.py -> build/bdist.linux-x86_64/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/struct.py -> build/bdist.linux-x86_64/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/constants.py -> build/bdist.linux-x86_64/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/schema.json -> build/bdist.linux-x86_64/wheel/./bioregistry/schema copying build/lib/bioregistry/record_accumulator.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/version.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/py.typed -> build/bdist.linux-x86_64/wheel/./bioregistry creating build/bdist.linux-x86_64/wheel/bioregistry/health copying build/lib/bioregistry/health/__main__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/health copying build/lib/bioregistry/health/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/health copying build/lib/bioregistry/health/cli.py -> build/bdist.linux-x86_64/wheel/./bioregistry/health copying build/lib/bioregistry/health/check_homepages.py -> build/bdist.linux-x86_64/wheel/./bioregistry/health copying build/lib/bioregistry/health/check_providers.py -> build/bdist.linux-x86_64/wheel/./bioregistry/health running install_egg_info Copying src/bioregistry.egg-info to build/bdist.linux-x86_64/wheel/./bioregistry-0.11.12.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/bioregistry-0.11.12.dist-info/WHEEL creating '/build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.12/.tmp-2_yskn51/bioregistry-0.11.12-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'bioregistry/__init__.py' adding 'bioregistry/__main__.py' adding 'bioregistry/bibliometrics.py' adding 'bioregistry/cli.py' adding 'bioregistry/collection_api.py' adding 'bioregistry/compare.py' adding 'bioregistry/constants.py' adding 'bioregistry/license_standardizer.py' adding 'bioregistry/lint.py' adding 'bioregistry/metaresource_api.py' adding 'bioregistry/pandas.py' adding 'bioregistry/parse_iri.py' adding 'bioregistry/parse_version_iri.py' adding 'bioregistry/py.typed' adding 'bioregistry/record_accumulator.py' adding 'bioregistry/resolve.py' adding 'bioregistry/resolve_identifier.py' adding 'bioregistry/resource_manager.py' adding 'bioregistry/schema_utils.py' adding 'bioregistry/summary.py' adding 'bioregistry/upload_ndex.py' adding 'bioregistry/uri_format.py' adding 'bioregistry/utils.py' adding 'bioregistry/version.py' adding 'bioregistry/analysis/__init__.py' adding 'bioregistry/analysis/bioregistry_diff.py' adding 'bioregistry/analysis/paper_ranking.py' adding 'bioregistry/analysis/paper_ranking_requirements.txt' adding 'bioregistry/app/__init__.py' adding 'bioregistry/app/api.py' adding 'bioregistry/app/cli.py' adding 'bioregistry/app/constants.py' adding 'bioregistry/app/impl.py' adding 'bioregistry/app/proxies.py' adding 'bioregistry/app/test.py' adding 'bioregistry/app/ui.py' adding 'bioregistry/app/utils.py' adding 'bioregistry/app/wsgi.py' adding 'bioregistry/app/static/logo.svg' adding 'bioregistry/app/templates/base.html' adding 'bioregistry/app/templates/collection.html' adding 'bioregistry/app/templates/collections.html' adding 'bioregistry/app/templates/context.html' adding 'bioregistry/app/templates/contexts.html' adding 'bioregistry/app/templates/contributor.html' adding 'bioregistry/app/templates/contributors.html' adding 'bioregistry/app/templates/home.html' adding 'bioregistry/app/templates/macros.html' adding 'bioregistry/app/templates/metaresource.html' adding 'bioregistry/app/templates/metaresources.html' adding 'bioregistry/app/templates/prose.html' adding 'bioregistry/app/templates/reference.html' adding 'bioregistry/app/templates/resource.html' adding 'bioregistry/app/templates/resources.html' adding 'bioregistry/app/templates/highlights/keywords.html' adding 'bioregistry/app/templates/highlights/owners.html' adding 'bioregistry/app/templates/highlights/relations.html' adding 'bioregistry/app/templates/highlights/twitter.html' adding 'bioregistry/app/templates/meta/access.html' adding 'bioregistry/app/templates/meta/acknowledgements.html' adding 'bioregistry/app/templates/meta/download.html' adding 'bioregistry/app/templates/meta/related.html' adding 'bioregistry/app/templates/meta/schema.html' adding 'bioregistry/app/templates/meta/summary.html' adding 'bioregistry/app/templates/meta/sustainability.html' adding 'bioregistry/app/templates/resolve_errors/disallowed_identifier.html' adding 'bioregistry/app/templates/resolve_errors/invalid_identifier.html' adding 'bioregistry/app/templates/resolve_errors/missing_prefix.html' adding 'bioregistry/app/templates/resolve_errors/missing_providers.html' adding 'bioregistry/benchmarks/__init__.py' adding 'bioregistry/benchmarks/__main__.py' adding 'bioregistry/benchmarks/cli.py' adding 'bioregistry/benchmarks/curie_parsing.py' adding 'bioregistry/benchmarks/curie_validation.py' adding 'bioregistry/benchmarks/uri_parsing.py' adding 'bioregistry/curation/__init__.py' adding 'bioregistry/curation/add_co_providers.py' adding 'bioregistry/curation/add_descriptions_from_gs.py' adding 'bioregistry/curation/add_examples.py' adding 'bioregistry/curation/add_examples_from_javert.py' adding 'bioregistry/curation/add_examples_from_ols.py' adding 'bioregistry/curation/add_ontology_regexes.py' adding 'bioregistry/curation/bulk_import.py' adding 'bioregistry/curation/clean_licenses.py' adding 'bioregistry/curation/clean_name_suffixes.py' adding 'bioregistry/curation/clean_publications.py' adding 'bioregistry/curation/cleanup_authors.py' adding 'bioregistry/curation/curated_papers.csv' adding 'bioregistry/curation/deprecation_diff.py' adding 'bioregistry/curation/enrich_publications.py' adding 'bioregistry/curation/fix_obo_purls.py' adding 'bioregistry/curation/import_pc_semiautomatic.py' adding 'bioregistry/curation/make_description_curation_sheet.py' adding 'bioregistry/curation/make_health_report_curation_sheet.py' adding 'bioregistry/curation/map_bartoc_via_wikidata.py' adding 'bioregistry/curation/map_re3data_via_fairsharing.py' adding 'bioregistry/curation/rename_metaprefix.py' adding 'bioregistry/curation/review_pc.py' adding 'bioregistry/curation/suggest_author_curation.py' adding 'bioregistry/curation/suggest_uniprot_providers.py' adding 'bioregistry/data/README.md' adding 'bioregistry/data/__init__.py' adding 'bioregistry/data/bioregistry.json' adding 'bioregistry/data/collections.json' adding 'bioregistry/data/contexts.json' adding 'bioregistry/data/metaregistry.json' adding 'bioregistry/data/mismatch.json' adding 'bioregistry/export/__init__.py' adding 'bioregistry/export/__main__.py' adding 'bioregistry/export/cli.py' adding 'bioregistry/export/prefix_maps.py' adding 'bioregistry/export/prefixcc.py' adding 'bioregistry/export/rdf_export.py' adding 'bioregistry/export/schema_export.py' adding 'bioregistry/export/sssom_export.py' adding 'bioregistry/export/tables_export.py' adding 'bioregistry/export/tsv_export.py' adding 'bioregistry/export/warnings_export.py' adding 'bioregistry/export/yaml_export.py' adding 'bioregistry/external/__init__.py' adding 'bioregistry/external/align.py' adding 'bioregistry/external/alignment_utils.py' adding 'bioregistry/external/aberowl/__init__.py' adding 'bioregistry/external/aberowl/processed.json' adding 'bioregistry/external/bartoc/__init__.py' adding 'bioregistry/external/bartoc/processed.json' adding 'bioregistry/external/biocontext/__init__.py' adding 'bioregistry/external/biocontext/processed.json' adding 'bioregistry/external/biolink/__init__.py' adding 'bioregistry/external/biolink/processed.json' adding 'bioregistry/external/biolink/processing_biolink.json' adding 'bioregistry/external/bioportal/__init__.py' adding 'bioregistry/external/bioportal/agroportal.json' adding 'bioregistry/external/bioportal/agroportal.py' adding 'bioregistry/external/bioportal/bioportal.json' adding 'bioregistry/external/bioportal/bioportal.py' adding 'bioregistry/external/bioportal/ecoportal.json' adding 'bioregistry/external/bioportal/ecoportal.py' adding 'bioregistry/external/cellosaurus/__init__.py' adding 'bioregistry/external/cellosaurus/processed.json' adding 'bioregistry/external/cheminf/__init__.py' adding 'bioregistry/external/cheminf/processed.json' adding 'bioregistry/external/cropoct/__init__.py' adding 'bioregistry/external/cropoct/processed.json' adding 'bioregistry/external/edam/__init__.py' adding 'bioregistry/external/edam/processed.json' adding 'bioregistry/external/fairsharing/__init__.py' adding 'bioregistry/external/fairsharing/processed.json' adding 'bioregistry/external/go/__init__.py' adding 'bioregistry/external/go/processed.json' adding 'bioregistry/external/go/processing_go.json' adding 'bioregistry/external/hl7/OID_Report.csv' adding 'bioregistry/external/hl7/__init__.py' adding 'bioregistry/external/integbio/__init__.py' adding 'bioregistry/external/integbio/processed.json' adding 'bioregistry/external/lov/__init__.py' adding 'bioregistry/external/lov/processed.json' adding 'bioregistry/external/miriam/__init__.py' adding 'bioregistry/external/miriam/processed.json' adding 'bioregistry/external/n2t/__init__.py' adding 'bioregistry/external/n2t/processed.json' adding 'bioregistry/external/ncbi/__init__.py' adding 'bioregistry/external/ncbi/processed.json' adding 'bioregistry/external/obofoundry/__init__.py' adding 'bioregistry/external/obofoundry/processed.json' adding 'bioregistry/external/ols/__init__.py' adding 'bioregistry/external/ols/processed.json' adding 'bioregistry/external/ols/processing_ols.json' adding 'bioregistry/external/ontobee/__init__.py' adding 'bioregistry/external/ontobee/processed.json' adding 'bioregistry/external/pathguide/__init__.py' adding 'bioregistry/external/prefixcommons/__init__.py' adding 'bioregistry/external/prefixcommons/processed.json' adding 'bioregistry/external/re3data/__init__.py' adding 'bioregistry/external/re3data/processed.json' adding 'bioregistry/external/rrid/__init__.py' adding 'bioregistry/external/togoid/__init__.py' adding 'bioregistry/external/togoid/processed.json' adding 'bioregistry/external/uniprot/__init__.py' adding 'bioregistry/external/uniprot/processed.json' adding 'bioregistry/external/wikidata/__init__.py' adding 'bioregistry/external/wikidata/processed.json' adding 'bioregistry/external/zazuko/__init__.py' adding 'bioregistry/external/zazuko/processed.json' adding 'bioregistry/gh/__init__.py' adding 'bioregistry/gh/github_client.py' adding 'bioregistry/gh/new_prefix.py' adding 'bioregistry/health/__init__.py' adding 'bioregistry/health/__main__.py' adding 'bioregistry/health/check_homepages.py' adding 'bioregistry/health/check_providers.py' adding 'bioregistry/health/cli.py' adding 'bioregistry/schema/__init__.py' adding 'bioregistry/schema/constants.py' adding 'bioregistry/schema/schema.json' adding 'bioregistry/schema/struct.py' adding 'bioregistry/schema/utils.py' adding 'bioregistry-0.11.12.dist-info/LICENSE' adding 'bioregistry-0.11.12.dist-info/METADATA' adding 'bioregistry-0.11.12.dist-info/WHEEL' adding 'bioregistry-0.11.12.dist-info/entry_points.txt' adding 'bioregistry-0.11.12.dist-info/top_level.txt' adding 'bioregistry-0.11.12.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built bioregistry-0.11.12-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.12/build; python3.12 -m pytest -k 'not test_url and not test_url_banana and not test_obolibrary_example and not test_usages ' ============================= test session starts ============================== platform linux -- Python 3.12.6, pytest-8.3.2, pluggy-1.5.0 rootdir: /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.12/build configfile: pyproject.toml plugins: typeguard-4.3.0, anyio-4.4.0 collected 137 items / 6 deselected / 131 selected tests/test_api.py . [ 0%] tests/test_collections.py ... [ 3%] tests/test_contexts.py .... [ 6%] tests/test_data.py ...................s............................s... [ 45%] tests/test_data_slow.py ... [ 48%] tests/test_duplicates.py .. [ 49%] tests/test_identifiers_org.py .... [ 52%] tests/test_indra.py ss [ 54%] tests/test_manager.py ........... [ 62%] tests/test_metaregistry.py ..... [ 66%] tests/test_obofoundry.py . [ 67%] tests/test_ols.py . [ 67%] tests/test_pandas.py .s.... [ 72%] tests/test_resolve.py ....... [ 77%] tests/test_sparql.py s [ 78%] tests/test_utils.py .. [ 80%] tests/test_web/test_api.py ................ [ 92%] tests/test_web/test_ui.py .......... [100%] =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/pydantic/main.py:1132: 1778 warnings tests/test_contexts.py: 1778 warnings tests/test_manager.py: 19657 warnings tests/test_web/test_api.py: 5336 warnings /usr/lib/python3/dist-packages/pydantic/main.py:1132: PydanticDeprecatedSince20: The `parse_obj` method is deprecated; use `model_validate` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.8/migration/ warnings.warn( ../../../../../../usr/lib/python3/dist-packages/pydantic/main.py:1087: 7112 warnings tests/test_api.py: 14 warnings tests/test_collections.py: 89 warnings tests/test_contexts.py: 240779 warnings tests/test_data.py: 276342 warnings tests/test_data_slow.py: 382097 warnings tests/test_identifiers_org.py: 2275 warnings tests/test_manager.py: 473548 warnings tests/test_metaregistry.py: 333 warnings tests/test_resolve.py: 11872 warnings tests/test_web/test_api.py: 9338 warnings tests/test_web/test_ui.py: 18427 warnings /usr/lib/python3/dist-packages/pydantic/main.py:1087: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.8/migration/ warnings.warn('The `dict` method is deprecated; use `model_dump` instead.', category=PydanticDeprecatedSince20) bioregistry/app/api.py:137 /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.12/build/bioregistry/app/api.py:137: DeprecationWarning: `example` has been deprecated, please use `examples` instead prefix: str = Path( bioregistry/app/api.py:185 /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.12/build/bioregistry/app/api.py:185: DeprecationWarning: `example` has been deprecated, please use `examples` instead METAPREFIX_PATH = Path( bioregistry/app/api.py:353 /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.12/build/bioregistry/app/api.py:353: DeprecationWarning: `example` has been deprecated, please use `examples` instead identifier: str = Path( bioregistry/app/api.py:405 /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.12/build/bioregistry/app/api.py:405: DeprecationWarning: `example` has been deprecated, please use `examples` instead identifier: str = Path(title="Context Key", description="The context key", example="obo"), ../../../../../../usr/lib/python3/dist-packages/starlette/middleware/wsgi.py:14 /usr/lib/python3/dist-packages/starlette/middleware/wsgi.py:14: DeprecationWarning: starlette.middleware.wsgi is deprecated and will be removed in a future release. Please refer to https://github.com/abersheeran/a2wsgi as a replacement. warnings.warn( tests/test_data.py: 1 warning tests/test_metaregistry.py: 32 warnings tests/test_web/test_ui.py: 22 warnings /usr/lib/python3/dist-packages/pydantic/_internal/_model_construction.py:268: PydanticDeprecatedSince20: The `__fields__` attribute is deprecated, use `model_fields` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.8/migration/ warnings.warn( tests/test_web/test_ui.py::TestUI::test_ui tests/test_web/test_ui.py::TestUI::test_ui /usr/lib/python3/dist-packages/pydantic/main.py:1328: PydanticDeprecatedSince20: The `schema` method is deprecated; use `model_json_schema` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.8/migration/ warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html == 125 passed, 6 skipped, 6 deselected, 1450837 warnings in 215.40s (0:03:35) == create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-bioregistry/ -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir debian/rules execute_after_dh_auto_install make[1]: Entering directory '/build/reproducible-path/python-bioregistry-0.11.12' sed -i 's#https://raw.githubusercontent.com/biopragmatics/bioregistry/main/docs/img/#file://#' \ debian/python3-bioregistry/usr/lib/python3*/dist-packages/bioregistry/app/templates/meta/summary.html make[1]: Leaving directory '/build/reproducible-path/python-bioregistry-0.11.12' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-bioregistry' in '../python3-bioregistry_0.11.12-3_all.deb'. dpkg-genbuildinfo --build=binary -O../python-bioregistry_0.11.12-3_amd64.buildinfo dpkg-genchanges --build=binary -O../python-bioregistry_0.11.12-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-bioregistry-0.11.12/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3705844 and its subdirectories I: Current time: Tue Oct 14 12:28:48 -12 2025 I: pbuilder-time-stamp: 1760488128 Wed Sep 11 18:05:50 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom01-amd64.debian.net. Wed Sep 11 18:05:50 UTC 2024 I: Preparing to do remote build '2' on infom01-amd64.debian.net. Wed Sep 11 18:15:53 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. Wed Sep 11 18:15:54 UTC 2024 I: python-bioregistry_0.11.12-3_amd64.changes: Format: 1.8 Date: Wed, 11 Sep 2024 11:35:43 +0200 Source: python-bioregistry Binary: python3-bioregistry Architecture: all Version: 0.11.12-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alexandre Detiste Description: python3-bioregistry - community curated registry, meta-registry, and compact identifier Closes: 1080722 Changes: python-bioregistry (0.11.12-3) unstable; urgency=medium . * Add dependency on python3-setuptools (Closes: #1080722) Checksums-Sha1: 7252956cd36da7814ed6cd52bd50c7b411129d2d 8114 python-bioregistry_0.11.12-3_amd64.buildinfo 9145422846aa30daeee1a9243763735c3c5b9fa4 3907148 python3-bioregistry_0.11.12-3_all.deb Checksums-Sha256: 4e1892052a3ad343606be09ac6873f908a5c70f21fbc184ac2770f84624b1a7c 8114 python-bioregistry_0.11.12-3_amd64.buildinfo 54297dafac3e894dfca77c05cc6d56202d00fbeddf6ca8455e6d0f76568cb5e2 3907148 python3-bioregistry_0.11.12-3_all.deb Files: 1ebb8fcc708a30785156da75b252d28c 8114 science optional python-bioregistry_0.11.12-3_amd64.buildinfo 4a8b79a084aacced2b5f91deaf499b73 3907148 python optional python3-bioregistry_0.11.12-3_all.deb Wed Sep 11 18:15:55 UTC 2024 I: diffoscope 277 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_38-25369.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.tNuxSUxH/python-bioregistry_0.11.12-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.tNuxSUxH/python-bioregistry_0.11.12-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.tNuxSUxH/python-bioregistry_0.11.12-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.tNuxSUxH/b1/python-bioregistry_0.11.12-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.tNuxSUxH/b2/python-bioregistry_0.11.12-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.443s) 0.443s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.057s) 0.057s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 805ms CPU time consumed: 802ms Wed Sep 11 18:15:56 UTC 2024 I: diffoscope 277 found no differences in the changes files, and a .buildinfo file also exists. Wed Sep 11 18:15:56 UTC 2024 I: python-bioregistry from unstable built successfully and reproducibly on amd64. Wed Sep 11 18:15:57 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Sep 11 18:15:57 UTC 2024 I: Submitting 12K b1/python-bioregistry_0.11.12-3_amd64.buildinfo.asc Wed Sep 11 18:15:58 UTC 2024 I: Submitting 12K b2/python-bioregistry_0.11.12-3_amd64.buildinfo.asc Wed Sep 11 18:15:58 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Sep 11 18:15:58 UTC 2024 I: Done submitting .buildinfo files. Wed Sep 11 18:15:58 UTC 2024 I: Removing signed python-bioregistry_0.11.12-3_amd64.buildinfo.asc files: removed './b1/python-bioregistry_0.11.12-3_amd64.buildinfo.asc' removed './b2/python-bioregistry_0.11.12-3_amd64.buildinfo.asc'