Fri Nov 21 09:08:26 UTC 2025 I: starting to build pymatgen/unstable/amd64 on jenkins on '2025-11-21 09:08' Fri Nov 21 09:08:26 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_19/76470/console.log Fri Nov 21 09:08:26 UTC 2025 I: Downloading source for unstable/pymatgen=2025.10.7+dfsg1-1 --2025-11-21 09:08:27-- http://deb.debian.org/debian/pool/main/p/pymatgen/pymatgen_2025.10.7%2bdfsg1-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 3190 (3.1K) [text/prs.lines.tag] Saving to: ‘pymatgen_2025.10.7+dfsg1-1.dsc’ 0K ... 100% 356M=0s 2025-11-21 09:08:27 (356 MB/s) - ‘pymatgen_2025.10.7+dfsg1-1.dsc’ saved [3190/3190] Fri Nov 21 09:08:27 UTC 2025 I: pymatgen_2025.10.7+dfsg1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pymatgen Binary: python3-pymatgen, python-pymatgen-doc Architecture: any all Version: 2025.10.7+dfsg1-1 Maintainer: Debichem Team Uploaders: Drew Parsons Homepage: https://pymatgen.org/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/debichem-team/pymatgen Vcs-Git: https://salsa.debian.org/debichem-team/pymatgen.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, packmol, python3-all Build-Depends: debhelper-compat (= 13), pymatgen-test-files (>= 2025.10.7~) , dh-python, dh-sequence-python3, cython3, pybuild-plugin-pyproject, python3-setuptools, python3-all-dev, python3-pytest, python3-bibtexparser, python3-frozendict, python3-matplotlib (>= 3.8~), python3-monty (>= 2025.1.9~), python3-networkx (>= 3~), python3-numpy-dev (>= 1.25.0~), python3-orjson, python3-palettable (>= 3.3.3~), python3-pandas (>= 2~), python3-plotly (>= 5.0.0~), python3-requests (>= 2.32~), python3-ruamel.yaml (>= 0.17.0~), python3-scipy (>= 1.13.0~), python3-spglib (>= 2.5.0~), python3-sympy (>= 1.6.2~), python3-tabulate (>= 0.9~), python3-tqdm (>= 4.60~), python3-uncertainties (>= 3.1.4~), python3-joblib (>= 1~), python3-ase (>= 3.23.0~), python3-bs4 (>= 4.9.1~), python3-h5py (>= 3.11.0~), python3-netcdf4 (>= 1.6.5~), python3-phonopy (>= 2.33.3~), python3-openbabel (>= 3.1.1~), packmol [!armel !riscv64] Build-Depends-Indep: dh-sequence-sphinxdoc , libjs-jquery , libjs-mathjax , python3-sphinx-rtd-theme Package-List: python-pymatgen-doc deb doc optional arch=all python3-pymatgen deb python optional arch=any Checksums-Sha1: 15a0ab2a4714657f4ddbabb7457a1e5be92a13cd 10093628 pymatgen_2025.10.7+dfsg1.orig.tar.xz 47c420c9a616d7d0c2984c0046b62ad28b978518 17844 pymatgen_2025.10.7+dfsg1-1.debian.tar.xz Checksums-Sha256: 5aee34e4aa85875fbc22562e69eeb37c2da217d7b272043de67c18589363b297 10093628 pymatgen_2025.10.7+dfsg1.orig.tar.xz 0f976362df291904261d8838f53be03f57224c958d61bec2b2ad43c67aac4073 17844 pymatgen_2025.10.7+dfsg1-1.debian.tar.xz Files: 3bd8579069044f1d24b2e53058de25d9 10093628 pymatgen_2025.10.7+dfsg1.orig.tar.xz ee584e230655bfb90e71340eff352458 17844 pymatgen_2025.10.7+dfsg1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEI8mpPlhYGekSbQo2Vz7x5L1aAfoFAmjsWUUUHGRwYXJzb25z QGRlYmlhbi5vcmcACgkQVz7x5L1aAfo06g//RPCCWXeDvd54TKrvwTuNXRB0TpOT 4s65ZQozd71XFTG0jas+oUZ2QH7IP7KkwkeLzXSr3oXbsLHy8XmDIvBkrn+eIR/H jiKzN7GZqxGVhiaFyFaKGV3EI/wPhae1kAI4rB5FpBivqFtZXhTEBCNg/HetO9AM WuBIKWnv7/xna0dw/XXWxqwCdlymjUA7MXKj2Lg5dLbtbUp/zqaeuDe4cTGX0+xv 1Zdj7N8bjU5wXhD6NRTD6gvKyhKlmOuj+WAVIbbtU3C1pktq0oYZakCVP58lV38J 5w59uaebdTWsQFfhOSNqImQeOUAllXkpma8zASGJ+aA2cp/gVQ2x/EdMd7LrKdNy ZA+FwdG5qo6WQ65cjM+7kvraYD+jlkqMk4MlIyUm0LZJhBqPSIhHe2TVWnWaPMSD MG27I8Vd9x+6vXFzVZq+bxydU+t3988/VVCX2Ut/BZK8+/ZPwTGxHdaeKJeWKraO kRCCdlBYgWCLknskjblqhykxUs5ck5KVBcqlGYZg7Obr0i5U6/uDVrXYeyHJEpXy u3bC1jEPA19VJUmy+AOj61PiGDGC0j1p5so97J7e1t6VMUv70F85i07/ZbABpyOl b9xwoAR5uismfWK/pqdyuR7eK/mtCxm1L+OWoLOWRMqg9/toJSnL3yOwOQZcdn2p EF55QSe5fjsKi6o= =Biam -----END PGP SIGNATURE----- Fri Nov 21 09:08:27 UTC 2025 I: Checking whether the package is not for us Fri Nov 21 09:08:27 UTC 2025 I: Starting 1st build on remote node ionos1-amd64.debian.net. Fri Nov 21 09:08:27 UTC 2025 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Fri Nov 21 09:38:41 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Nov 20 21:08:28 -12 2025 I: pbuilder-time-stamp: 1763716108 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pymatgen_2025.10.7+dfsg1-1.dsc] I: copying [./pymatgen_2025.10.7+dfsg1.orig.tar.xz] I: copying [./pymatgen_2025.10.7+dfsg1-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./pymatgen_2025.10.7+dfsg1-1.dsc: no acceptable signature found dpkg-source: info: extracting pymatgen in pymatgen-2025.10.7+dfsg1 dpkg-source: info: unpacking pymatgen_2025.10.7+dfsg1.orig.tar.xz dpkg-source: info: unpacking pymatgen_2025.10.7+dfsg1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying test_lammps_regex_path.patch dpkg-source: info: applying skip_nonfree_testfile.patch dpkg-source: info: applying skip_test_zsl_numba.patch dpkg-source: info: applying no_sphinx_markdown_builder.patch dpkg-source: info: applying tests_init.patch dpkg-source: info: applying tests_pass_or_skip.patch dpkg-source: info: applying docs_index.patch dpkg-source: info: applying docs_libjs_local.patch dpkg-source: info: applying test_files_writing.patch dpkg-source: info: applying test_tolerance.patch dpkg-source: info: applying do-not-access-internet-during-build.patch dpkg-source: info: applying skip-performance-tests.patch dpkg-source: info: applying test_no_moyopy.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/530293/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='6ae79154ab554d7199b15ddbf721597d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='530293' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZwrLAcsh/pbuilderrc_Mzzg --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZwrLAcsh/b1 --logfile b1/build.log pymatgen_2025.10.7+dfsg1-1.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.12.57+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.57-1 (2025-11-05) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/530293/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), pymatgen-test-files (>= 2025.10.7~), dh-python, dh-sequence-python3, cython3, pybuild-plugin-pyproject, python3-setuptools, python3-all-dev, python3-pytest, python3-bibtexparser, python3-frozendict, python3-matplotlib (>= 3.8~), python3-monty (>= 2025.1.9~), python3-networkx (>= 3~), python3-numpy-dev (>= 1.25.0~), python3-orjson, python3-palettable (>= 3.3.3~), python3-pandas (>= 2~), python3-plotly (>= 5.0.0~), python3-requests (>= 2.32~), python3-ruamel.yaml (>= 0.17.0~), python3-scipy (>= 1.13.0~), python3-spglib (>= 2.5.0~), python3-sympy (>= 1.6.2~), python3-tabulate (>= 0.9~), python3-tqdm (>= 4.60~), python3-uncertainties (>= 3.1.4~), python3-joblib (>= 1~), python3-ase (>= 3.23.0~), python3-bs4 (>= 4.9.1~), python3-h5py (>= 3.11.0~), python3-netcdf4 (>= 1.6.5~), python3-phonopy (>= 2.33.3~), python3-openbabel (>= 3.1.1~), packmol, dh-sequence-sphinxdoc, libjs-jquery, libjs-mathjax, python3-sphinx-rtd-theme dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19866 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on pymatgen-test-files (>= 2025.10.7~); however: Package pymatgen-test-files is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-bibtexparser; however: Package python3-bibtexparser is not installed. pbuilder-satisfydepends-dummy depends on python3-frozendict; however: Package python3-frozendict is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib (>= 3.8~); however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-monty (>= 2025.1.9~); however: Package python3-monty is not installed. pbuilder-satisfydepends-dummy depends on python3-networkx (>= 3~); however: Package python3-networkx is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy-dev (>= 1.25.0~); however: Package python3-numpy-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-orjson; however: Package python3-orjson is not installed. pbuilder-satisfydepends-dummy depends on python3-palettable (>= 3.3.3~); however: Package python3-palettable is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas (>= 2~); however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-plotly (>= 5.0.0~); however: Package python3-plotly is not installed. pbuilder-satisfydepends-dummy depends on python3-requests (>= 2.32~); however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-ruamel.yaml (>= 0.17.0~); however: Package python3-ruamel.yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy (>= 1.13.0~); however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-spglib (>= 2.5.0~); however: Package python3-spglib is not installed. pbuilder-satisfydepends-dummy depends on python3-sympy (>= 1.6.2~); however: Package python3-sympy is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate (>= 0.9~); however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-tqdm (>= 4.60~); however: Package python3-tqdm is not installed. pbuilder-satisfydepends-dummy depends on python3-uncertainties (>= 3.1.4~); however: Package python3-uncertainties is not installed. pbuilder-satisfydepends-dummy depends on python3-joblib (>= 1~); however: Package python3-joblib is not installed. pbuilder-satisfydepends-dummy depends on python3-ase (>= 3.23.0~); however: Package python3-ase is not installed. pbuilder-satisfydepends-dummy depends on python3-bs4 (>= 4.9.1~); however: Package python3-bs4 is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py (>= 3.11.0~); however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-netcdf4 (>= 1.6.5~); however: Package python3-netcdf4 is not installed. pbuilder-satisfydepends-dummy depends on python3-phonopy (>= 2.33.3~); however: Package python3-phonopy is not installed. pbuilder-satisfydepends-dummy depends on python3-openbabel (>= 3.1.1~); however: Package python3-openbabel is not installed. pbuilder-satisfydepends-dummy depends on packmol; however: Package packmol is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-sphinxdoc; however: Package dh-sequence-sphinxdoc is not installed. pbuilder-satisfydepends-dummy depends on libjs-jquery; however: Package libjs-jquery is not installed. pbuilder-satisfydepends-dummy depends on libjs-mathjax; however: Package libjs-mathjax is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-lato{a} fonts-lyx{a} fonts-mathjax{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libabsl20240722{a} libaec0{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdav1d7{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgpg-error0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-310{a} libhdf5-hl-310{a} libidn2-0{a} libimagequant0{a} libinchi1.07{a} libjbig0{a} libjpeg62-turbo{a} libjs-bootstrap5{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap2{a} liblerc4{a} liblzf1{a} libmaeparser1{a} libmagic-mgc{a} libmagic1t64{a} libnetcdf22{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libngtcp2-crypto-ossl0{a} libopenbabel7{a} libopenjp2-7{a} libp11-kit0{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} librav1e0.8{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libsvtav1enc2{a} libsymspg2{a} libsz2{a} libtasn1-6{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2-16{a} libxrender1{a} libxslt1.1{a} libxss1{a} libyaml-0-2{a} libyuv0{a} libzopfli1{a} m4{a} man-db{a} media-types{a} netbase{a} node-popper2{a} openssl{a} packmol{a} po-debconf{a} procps{a} pybuild-plugin-pyproject{a} pymatgen-test-files{a} python-babel-localedata{a} python-matplotlib-data{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-annotated-types{a} python3-ase{a} python3-attr{a} python3-autocommand{a} python3-babel{a} python3-bibtexparser{a} python3-brotli{a} python3-bs4{a} python3-bson{a} python3-build{a} python3-certifi{a} python3-cftime{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-dev{a} python3-dnspython{a} python3-docutils{a} python3-email-validator{a} python3-fastjsonschema{a} python3-fonttools{a} python3-frozendict{a} python3-fs{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-joblib{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-jupyter-core{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-minimal{a} python3-monty{a} python3-more-itertools{a} python3-mpmath{a} python3-nbformat{a} python3-netcdf4{a} python3-networkx{a} python3-numpy{a} python3-numpy-dev{a} python3-openbabel{a} python3-orjson{a} python3-packaging{a} python3-palettable{a} python3-pandas{a} python3-pandas-lib{a} python3-phonopy{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-plotly{a} python3-pluggy{a} python3-pydantic{a} python3-pydantic-core{a} python3-pygments{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytz{a} python3-referencing{a} python3-requests{a} python3-roman-numerals{a} python3-rpds-py{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-scipy{a} python3-setuptools{a} python3-snowballstemmer{a} python3-soupsieve{a} python3-spglib{a} python3-sphinx{a} python3-sphinx-rtd-theme{a} python3-sphinxcontrib.jquery{a} python3-symfc{a} python3-sympy{a} python3-tabulate{a} python3-tenacity{a} python3-tk{a} python3-tqdm{a} python3-traitlets{a} python3-typeguard{a} python3-typing-extensions{a} python3-typing-inspection{a} python3-tz{a} python3-ufolib2{a} python3-uncertainties{a} python3-urllib3{a} python3-wheel{a} python3-yaml{a} python3-zipp{a} python3-zopfli{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} sphinx-rtd-theme-common{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix python-monty-doc python3-bottleneck python3-bson-ext python3-cryptography python3-cssselect python3-fqdn python3-gdal python3-h2 python3-html5lib python3-httpcore python3-httpx python3-isoduration python3-json-pointer python3-numba python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-psutil python3-pydot python3-pygraphviz python3-pymatgen python3-rfc3339-validator python3-rfc3986-validator python3-rfc3987 python3-tables python3-torch python3-uritemplate python3-webcolors shared-mime-info tcl wget xdg-user-dirs 0 packages upgraded, 281 newly installed, 0 to remove and 0 not upgraded. Need to get 419 MB of archives. After unpacking 1465 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 fonts-lato all 2.015-1 [2780 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.9-1 [764 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.3.5+ds-2 [139 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 15.2.0-8 [862 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.3.5+ds-2 [5096 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.4-1 [1496 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.2-1 [245 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-3 [878 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.2-1 [772 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1041 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+26 [217 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.17-1 [794 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [591 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 blt amd64 2.5.3+dfsg-8 [5984 B] Get: 61 http://deb.debian.org/debian unstable/main amd64 cython3 amd64 3.1.6+dfsg-2 [2349 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 68 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.4 [640 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.2-1 [1687 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 docutils-common all 0.22.3+dfsg-1 [128 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 fonts-lyx all 2.4.4-2 [190 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.4-2 [23.8 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libaom3 amd64 3.13.1-2 [1906 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.5.2-1 [564 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libgav1-1 amd64 0.19.0-3+b1 [353 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 librav1e0.8 amd64 0.8.1-6 [978 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libyuv0 amd64 0.0.1919.20250919-1 [175 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libavif16 amd64 1.3.0-1+b1 [137 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.46.4-1 [259 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.10-1 [444 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.10-3 [1493 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.22.1-2 [33.1 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.22.1-2 [81.1 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 107 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.22.1-2 [337 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.22.1-2 [139 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.16.0-1 [25.2 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.17.0-2 [401 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.17.0-2 [409 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.7.3-1 [165 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-3 [26.6 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libgpg-error0 amd64 1.56-2 [89.1 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libgcrypt20 amd64 1.11.2-3 [871 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.86.2-1 [1547 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-11 [76.7 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 12.1.0-1 [530 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.4-2 [8108 B] Get: 129 http://deb.debian.org/debian unstable/main amd64 libhdf5-310 amd64 1.14.5+repack-4 [1448 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-4 [72.6 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 4.4.0-3 [251 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libinchi1.07 amd64 1.07.3+dfsg-1 [557 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 node-popper2 all 2.11.2-9 [100 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libjs-bootstrap5 all 5.3.8+dfsg-1 [460 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.2.3-9 [27.7 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.17-1 [163 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 liblzf1 amd64 3.6-4+b3 [10.1 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libmaeparser1 amd64 1.3.3-3 [95.1 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libnetcdf22 amd64 1:4.9.3-1+b1 [517 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libopenbabel7 amd64 3.1.1+dfsg-14 [3261 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [204 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.9-1 [2184 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.9-1 [5311 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.7-1 [10.5 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.13.7-1 [1068 B] Get: 153 http://deb.debian.org/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-7 [248 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.3-1 [14.0 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libsymspg2 amd64 2.6.0-3 [194 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.1-1 [361 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.43-0.3 [158 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libzopfli1 amd64 1.0.3-3 [106 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 packmol amd64 1:21.1.1-1 [118 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.46.1-2 [21.7 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 python3-build all 1.2.2-4 [36.2 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 pybuild-plugin-pyproject all 6.20250414 [11.8 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 pymatgen-test-files all 2025.10.7-1 [218 MB] Get: 172 http://deb.debian.org/debian unstable/main amd64 python-babel-localedata all 2.17.0-1 [6050 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 python-matplotlib-data all 3.10.7+dfsg1-1 [2737 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.7-1 [1048 B] Get: 176 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.9-1 [504 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.7-1 [26.1 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.13.7-1 [1068 B] Get: 179 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 python3-annotated-types all 0.7.0-1 [18.8 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.16.3-1 [15.7 MB] Get: 183 http://deb.debian.org/debian unstable/main amd64 python3-spglib amd64 2.6.0-3 [53.6 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 12.0.0-1 [534 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 python3.13-tk amd64 3.13.9-1 [108 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 python3-tk amd64 3.13.9-1 [8688 B] Get: 188 http://deb.debian.org/debian unstable/main amd64 python3-pil.imagetk amd64 12.0.0-1 [81.1 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.1.3-1 [148 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 python3-contourpy amd64 1.3.1-2 [215 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 python3-cycler all 0.12.1-2 [9616 B] Get: 192 http://deb.debian.org/debian unstable/main amd64 python3-brotli amd64 1.1.0-2+b7 [320 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 python3-platformdirs all 4.4.0-1 [16.7 kB] Get: 194 http://deb.debian.org/debian unstable/main amd64 python3-fs all 2.4.16-9 [95.5 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 python3-lxml amd64 6.0.2-1 [1447 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 python3-lz4 amd64 4.4.4+dfsg-3 [25.6 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 python3-mpmath all 1.3.0-2 [419 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 python3-sympy all 1.14.0-2 [4228 kB] Get: 199 http://deb.debian.org/debian unstable/main amd64 python3-attr all 25.4.0-1 [73.1 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB] Get: 201 http://deb.debian.org/debian unstable/main amd64 python3-zopfli amd64 0.4.0-1 [10.5 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 unicode-data all 16.0.0-1 [9197 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 python3-fonttools amd64 4.57.0-2 [1457 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 python3-kiwisolver amd64 1.4.10~rc0-1 [61.9 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 python3-matplotlib amd64 3.10.7+dfsg1-1 [22.6 MB] Get: 206 http://deb.debian.org/debian unstable/main amd64 python3-ase all 3.26.0-2 [1750 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 python3-babel all 2.17.0-1 [117 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 python3-bibtexparser all 2.0.0b5+really1.4.3-1 [34.3 kB] Get: 210 http://deb.debian.org/debian unstable/main amd64 python3-soupsieve all 2.7-2 [39.0 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 python3-bs4 all 4.14.2-1 [116 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 python3-bson all 4.15.3-2 [93.2 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 214 http://deb.debian.org/debian unstable/main amd64 python3-cftime amd64 1.6.5-1 [396 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 216 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 python3-dnspython all 2.7.0-1 [164 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 python3-roman-numerals all 3.1.0-2 [8740 B] Get: 220 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.22.3+dfsg-1 [432 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.10-1 [42.0 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 python3-email-validator all 2.2.0-1 [31.6 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 python3-fastjsonschema all 2.21.1-1 [22.4 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 python3-frozendict all 2.4.6-1 [13.0 kB] Get: 225 http://deb.debian.org/debian unstable/main amd64 python3-h5py-serial amd64 3.15.1-3 [976 kB] Get: 226 http://deb.debian.org/debian unstable/main amd64 python3-h5py all 3.15.1-3 [18.8 kB] Get: 227 http://deb.debian.org/debian unstable/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 228 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 229 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 230 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 231 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 2.1.0-1 [7432 B] Get: 232 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 233 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 234 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 235 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 236 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 237 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 238 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 3.0.3-1 [13.8 kB] Get: 239 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.6-1 [107 kB] Get: 240 http://deb.debian.org/debian unstable/main amd64 python3-joblib all 1.4.2-5 [216 kB] Get: 241 http://deb.debian.org/debian unstable/main amd64 python3-rpds-py amd64 0.27.1-2 [262 kB] Get: 242 http://deb.debian.org/debian unstable/main amd64 python3-referencing all 0.36.2-1 [23.7 kB] Get: 243 http://deb.debian.org/debian unstable/main amd64 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get: 244 http://deb.debian.org/debian unstable/main amd64 python3-jsonschema all 4.25.1-2 [75.7 kB] Get: 245 http://deb.debian.org/debian unstable/main amd64 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Get: 246 http://deb.debian.org/debian unstable/main amd64 python3-jupyter-core all 5.7.2-5 [35.3 kB] Get: 247 http://deb.debian.org/debian unstable/main amd64 python3-pytz all 2025.2-4 [31.8 kB] Get: 248 http://deb.debian.org/debian unstable/main amd64 python3-pandas-lib amd64 2.3.3+dfsg-2 [4362 kB] Get: 249 http://deb.debian.org/debian unstable/main amd64 python3-pandas all 2.3.3+dfsg-2 [2935 kB] Get: 250 http://deb.debian.org/debian unstable/main amd64 python3-pydantic-core amd64 2.41.5-2 [1648 kB] Get: 251 http://deb.debian.org/debian unstable/main amd64 python3-typing-inspection all 0.4.2-1 [13.8 kB] Get: 252 http://deb.debian.org/debian unstable/main amd64 python3-pydantic amd64 2.12.4-1 [380 kB] Get: 253 http://deb.debian.org/debian unstable/main amd64 python3-tqdm all 4.67.1-6 [90.9 kB] Get: 254 http://deb.debian.org/debian unstable/main amd64 python3-ruamel.yaml.clib amd64 0.2.12+ds-1+b1 [135 kB] Get: 255 http://deb.debian.org/debian unstable/main amd64 python3-ruamel.yaml all 0.18.10+ds-1 [147 kB] Get: 256 http://deb.debian.org/debian unstable/main amd64 python3-monty all 2025.3.3-1 [46.1 kB] Get: 257 http://deb.debian.org/debian unstable/main amd64 python3-nbformat all 5.9.1-1 [45.1 kB] Get: 258 http://deb.debian.org/debian unstable/main amd64 python3-netcdf4 amd64 1.7.3-1 [625 kB] Get: 259 http://deb.debian.org/debian unstable/main amd64 python3-networkx all 3.4.2-2 [24.2 MB] Get: 260 http://deb.debian.org/debian unstable/main amd64 python3-openbabel amd64 3.1.1+dfsg-14 [577 kB] Get: 261 http://deb.debian.org/debian unstable/main amd64 python3-orjson amd64 3.11.3-2 [253 kB] Get: 262 http://deb.debian.org/debian unstable/main amd64 python3-palettable all 3.3.3-3 [62.9 kB] Get: 263 http://deb.debian.org/debian unstable/main amd64 python3-symfc all 1.5.4-3 [38.7 kB] Get: 264 http://deb.debian.org/debian unstable/main amd64 python3-yaml amd64 6.0.2-2 [137 kB] Get: 265 http://deb.debian.org/debian unstable/main amd64 python3-phonopy amd64 2.44.0-1 [344 kB] Get: 266 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.5.0-1 [116 kB] Get: 267 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.5+dfsg-1 [72.4 kB] Get: 268 http://deb.debian.org/debian unstable/main amd64 python3-tz all 2025.2-4 [4272 B] Get: 269 http://deb.debian.org/debian unstable/main amd64 python3-tenacity all 9.1.2-2 [46.2 kB] Get: 270 http://deb.debian.org/debian unstable/main amd64 python3-plotly all 5.20.0+dfsg-1 [2726 kB] Get: 271 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 272 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 273 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.4.2-1 [266 kB] Get: 274 http://deb.debian.org/debian unstable/main amd64 python3-snowballstemmer all 3.0.1-1 [63.5 kB] Get: 275 http://deb.debian.org/debian unstable/main amd64 sphinx-common all 8.2.3-9 [619 kB] Get: 276 http://deb.debian.org/debian unstable/main amd64 python3-sphinx all 8.2.3-9 [477 kB] Get: 277 http://deb.debian.org/debian unstable/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-3 [1023 kB] Get: 278 http://deb.debian.org/debian unstable/main amd64 python3-sphinxcontrib.jquery all 4.1-6 [7496 B] Get: 279 http://deb.debian.org/debian unstable/main amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-3 [29.7 kB] Get: 280 http://deb.debian.org/debian unstable/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 281 http://deb.debian.org/debian unstable/main amd64 python3-uncertainties all 3.2.3-3 [55.8 kB] Fetched 419 MB in 42s (10.0 MB/s) Preconfiguring packages ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19866 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.9-1_amd64.deb ... Unpacking python3.13-minimal (3.13.9-1) ... Setting up libpython3.13-minimal:amd64 (3.13.9-1) ... Setting up libexpat1:amd64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_amd64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up libdeflate0:amd64 (1.23-2) ... Setting up gettext-base (0.23.2-1) ... Setting up m4 (1.4.20-2) ... Setting up libgcrypt20:amd64 (1.11.2-3) ... Setting up libqhull-r8.0:amd64 (2020.2-7) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libabsl20240722:amd64 (20240722.0-4) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libaec0:amd64 (1.1.4-2) ... Setting up libelf1t64:amd64 (0.194-1) ... Setting up python-babel-localedata (2.17.0-1) ... Setting up libkrb5support0:amd64 (1.22.1-2) ... Setting up libmaeparser1:amd64 (1.3.3-3) ... Setting up librav1e0.8:amd64 (0.8.1-6) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Nov 21 09:12:10 UTC 2025. Universal Time is now: Fri Nov 21 09:12:10 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (16.0.0-1) ... Setting up libsymspg2:amd64 (2.6.0-3) ... Setting up autotools-dev (20240727.1) ... Setting up libblas3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.7.3-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ... Setting up libzopfli1 (1.0.3-3) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Setting up liblzf1:amd64 (3.6-4+b3) ... Setting up libfribidi0:amd64 (1.0.16-3) ... Setting up libimagequant0:amd64 (4.4.0-3) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libunistring5:amd64 (1.3-2) ... 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Setting up libglib2.0-0t64:amd64 (2.86.2-1) ... No schema files found: doing nothing. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up packmol (1:21.1.1-1) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up sphinx-common (8.2.3-9) ... Setting up libp11-kit0:amd64 (0.25.10-1) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-2) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:amd64 (12.1.0-1) ... Setting up libxss1:amd64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up libpython3.13-stdlib:amd64 (3.13.9-1) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up libpython3.13:amd64 (3.13.9-1) ... Setting up libgnutls30t64:amd64 (3.8.10-3) ... Setting up libxft2:amd64 (2.3.6-1+b4) ... Setting up python3.13 (3.13.9-1) ... 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Setting up python3-monty (2025.3.3-1) ... Setting up python3-symfc (1.5.4-3) ... Setting up python3-build (1.2.2-4) ... Setting up python3-referencing (0.36.2-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.7-1) ... Setting up libhdf5-hl-310:amd64 (1.14.5+repack-4) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up python3-openbabel (3.1.1+dfsg-14) ... Setting up pybuild-plugin-pyproject (6.20250414) ... Setting up libnetcdf22:amd64 (1:4.9.3-1+b1) ... Setting up python3-h5py-serial (3.15.1-3) ... Setting up python3-networkx (3.4.2-2) ... Setting up python3-h5py (3.15.1-3) ... Setting up python3-jsonschema-specifications (2023.12.1-2) ... Setting up python3-netcdf4 (1.7.3-1) ... Setting up python3-jsonschema (4.25.1-2) ... Setting up python3-nbformat (5.9.1-1) ... Setting up python3-plotly (5.20.0+dfsg-1) ... Setting up python3-fonttools (4.57.0-2) ... Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... Setting up python3-matplotlib (3.10.7+dfsg1-1) ... Setting up python3-ase (3.26.0-2) ... Setting up python3-phonopy (2.44.0-1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up docutils-common (0.22.3+dfsg-1) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up python3-docutils (0.22.3+dfsg-1) ... Setting up python3-sphinx (8.2.3-9) ... Setting up python3-sphinxcontrib.jquery (4.1-6) ... Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-3) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pymatgen-2025.10.7+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pymatgen_2025.10.7+dfsg1-1_source.changes dpkg-buildpackage: info: source package pymatgen dpkg-buildpackage: info: source version 2025.10.7+dfsg1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from pymatgen-2025.10.7+dfsg1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pymatgen-2025.10.7+dfsg1' rm -f pymatgen/optimization/linear_assignment.c pymatgen/optimization/neighbors.c pymatgen/util/coord_cython.c rm -rf pd.json .hypothesis tmp_dir make[1]: Leaving directory '/build/reproducible-path/pymatgen-2025.10.7+dfsg1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/pymatgen-2025.10.7+dfsg1/.pybuild/cpython3_3.13_pymatgen * Building wheel... /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running bdist_wheel running build running build_py creating build/lib.linux-x86_64-cpython-313/pymatgen copying src/pymatgen/dao.py -> build/lib.linux-x86_64-cpython-313/pymatgen creating build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/packmol.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/cif.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/ase.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/atat.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/res.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/gaussian.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/jarvis.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/lmto.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/optimade.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/common.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/multiwfn.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/phonopy.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/zeopp.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/core.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/xr.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/fiesta.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/icet.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/shengbte.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/wannier90.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/xcrysden.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/babel.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/template.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/prismatic.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/nwchem.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/adf.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/cssr.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/xyz.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/openff.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io copying src/pymatgen/io/pwscf.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io creating build/lib.linux-x86_64-cpython-313/pymatgen/apps copying src/pymatgen/apps/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/apps creating build/lib.linux-x86_64-cpython-313/pymatgen/vis copying src/pymatgen/vis/structure_vtk.py -> build/lib.linux-x86_64-cpython-313/pymatgen/vis copying src/pymatgen/vis/plotters.py -> build/lib.linux-x86_64-cpython-313/pymatgen/vis copying src/pymatgen/vis/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/vis copying src/pymatgen/vis/structure_chemview.py -> build/lib.linux-x86_64-cpython-313/pymatgen/vis creating build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/dos.py -> build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/plotter.py -> build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/boltztrap.py -> build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/bandstructure.py -> build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/boltztrap2.py -> build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/core.py -> build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/cohp.py -> build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure creating build/lib.linux-x86_64-cpython-313/pymatgen/ext copying src/pymatgen/ext/optimade.py -> build/lib.linux-x86_64-cpython-313/pymatgen/ext copying src/pymatgen/ext/cod.py -> build/lib.linux-x86_64-cpython-313/pymatgen/ext copying src/pymatgen/ext/matproj.py -> build/lib.linux-x86_64-cpython-313/pymatgen/ext creating build/lib.linux-x86_64-cpython-313/pymatgen/optimization copying src/pymatgen/optimization/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/optimization creating build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/bandstructure.py -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/kpath.py -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/analyzer.py -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/maggroups.py -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/structure.py -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/groups.py -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/settings.py -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/site_symmetries.py -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry creating build/lib.linux-x86_64-cpython-313/pymatgen/command_line copying src/pymatgen/command_line/enumlib_caller.py -> build/lib.linux-x86_64-cpython-313/pymatgen/command_line copying src/pymatgen/command_line/bader_caller.py -> build/lib.linux-x86_64-cpython-313/pymatgen/command_line copying src/pymatgen/command_line/mcsqs_caller.py -> build/lib.linux-x86_64-cpython-313/pymatgen/command_line copying src/pymatgen/command_line/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/command_line copying src/pymatgen/command_line/critic2_caller.py -> build/lib.linux-x86_64-cpython-313/pymatgen/command_line copying src/pymatgen/command_line/gulp_caller.py -> build/lib.linux-x86_64-cpython-313/pymatgen/command_line copying src/pymatgen/command_line/vampire_caller.py -> build/lib.linux-x86_64-cpython-313/pymatgen/command_line copying src/pymatgen/command_line/chargemol_caller.py -> build/lib.linux-x86_64-cpython-313/pymatgen/command_line creating build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/surface.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/molecular_orbitals.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/bonds.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/units.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/xcfunc.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/spectrum.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/composition.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/interface.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/periodic_table.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/lattice.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/libxcfunc.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/structure.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/ion.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/tensors.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/trajectory.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/sites.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/operations.py -> build/lib.linux-x86_64-cpython-313/pymatgen/core creating build/lib.linux-x86_64-cpython-313/pymatgen/entries copying src/pymatgen/entries/computed_entries.py -> build/lib.linux-x86_64-cpython-313/pymatgen/entries copying src/pymatgen/entries/mixing_scheme.py -> build/lib.linux-x86_64-cpython-313/pymatgen/entries copying src/pymatgen/entries/exp_entries.py -> build/lib.linux-x86_64-cpython-313/pymatgen/entries copying src/pymatgen/entries/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/entries copying src/pymatgen/entries/correction_calculator.py -> build/lib.linux-x86_64-cpython-313/pymatgen/entries copying src/pymatgen/entries/compatibility.py -> build/lib.linux-x86_64-cpython-313/pymatgen/entries copying src/pymatgen/entries/entry_tools.py -> build/lib.linux-x86_64-cpython-313/pymatgen/entries creating build/lib.linux-x86_64-cpython-313/pymatgen/phonon copying src/pymatgen/phonon/dos.py -> build/lib.linux-x86_64-cpython-313/pymatgen/phonon copying src/pymatgen/phonon/plotter.py -> build/lib.linux-x86_64-cpython-313/pymatgen/phonon copying src/pymatgen/phonon/bandstructure.py -> build/lib.linux-x86_64-cpython-313/pymatgen/phonon copying src/pymatgen/phonon/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/phonon copying src/pymatgen/phonon/ir_spectra.py -> build/lib.linux-x86_64-cpython-313/pymatgen/phonon copying src/pymatgen/phonon/gruneisen.py -> build/lib.linux-x86_64-cpython-313/pymatgen/phonon copying src/pymatgen/phonon/thermal_displacements.py -> build/lib.linux-x86_64-cpython-313/pymatgen/phonon creating build/lib.linux-x86_64-cpython-313/pymatgen/transformations copying src/pymatgen/transformations/site_transformations.py -> build/lib.linux-x86_64-cpython-313/pymatgen/transformations copying src/pymatgen/transformations/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/transformations copying src/pymatgen/transformations/standard_transformations.py -> build/lib.linux-x86_64-cpython-313/pymatgen/transformations copying src/pymatgen/transformations/transformation_abc.py -> build/lib.linux-x86_64-cpython-313/pymatgen/transformations copying src/pymatgen/transformations/advanced_transformations.py -> build/lib.linux-x86_64-cpython-313/pymatgen/transformations creating build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/provenance.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/num.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/graph_hashing.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/testing.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/string.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/misc.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/due.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/joblib.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/typing.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/coord.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/plotting.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/io_utils.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/numba.py -> build/lib.linux-x86_64-cpython-313/pymatgen/util creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/quasirrho.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/excitation.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/piezo.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/eos.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/thermochemistry.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/hhi.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/molecule_structure_comparator.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/transition_state.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/optics.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/wulff.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/bond_dissociation.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/adsorption.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/chempot_diagram.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/cost.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/energy_models.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/ewald.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/piezo_sensitivity.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/structure_analyzer.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/pourbaix_diagram.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/surface_analysis.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/structure_matcher.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/bond_valence.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/reaction_calculator.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/phase_diagram.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/xps.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/local_env.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/disorder.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/molecule_matcher.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/fragmenter.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/quasiharmonic.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/graphs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/dimensionality.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/functional_groups.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/nmr.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/interface_reactions.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis creating build/lib.linux-x86_64-cpython-313/pymatgen/alchemy copying src/pymatgen/alchemy/materials.py -> build/lib.linux-x86_64-cpython-313/pymatgen/alchemy copying src/pymatgen/alchemy/filters.py -> build/lib.linux-x86_64-cpython-313/pymatgen/alchemy copying src/pymatgen/alchemy/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/alchemy copying src/pymatgen/alchemy/transmuters.py -> build/lib.linux-x86_64-cpython-313/pymatgen/alchemy creating build/lib.linux-x86_64-cpython-313/pymatgen/cli copying src/pymatgen/cli/pmg.py -> build/lib.linux-x86_64-cpython-313/pymatgen/cli copying src/pymatgen/cli/pmg_analyze.py -> build/lib.linux-x86_64-cpython-313/pymatgen/cli copying src/pymatgen/cli/pmg_potcar.py -> build/lib.linux-x86_64-cpython-313/pymatgen/cli copying src/pymatgen/cli/pmg_config.py -> build/lib.linux-x86_64-cpython-313/pymatgen/cli copying src/pymatgen/cli/get_environment.py -> build/lib.linux-x86_64-cpython-313/pymatgen/cli copying src/pymatgen/cli/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/cli copying src/pymatgen/cli/feff_plot_cross_section.py -> build/lib.linux-x86_64-cpython-313/pymatgen/cli copying src/pymatgen/cli/feff_plot_dos.py -> build/lib.linux-x86_64-cpython-313/pymatgen/cli copying src/pymatgen/cli/pmg_plot.py -> build/lib.linux-x86_64-cpython-313/pymatgen/cli copying src/pymatgen/cli/pmg_structure.py -> build/lib.linux-x86_64-cpython-313/pymatgen/cli creating build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit copying src/pymatgen/io/abinit/netcdf.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit copying src/pymatgen/io/abinit/inputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit copying src/pymatgen/io/abinit/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit copying src/pymatgen/io/abinit/variable.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit copying src/pymatgen/io/abinit/pseudos.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit copying src/pymatgen/io/abinit/abiobjects.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit copying src/pymatgen/io/abinit/abitimer.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit creating build/lib.linux-x86_64-cpython-313/pymatgen/io/qchem copying src/pymatgen/io/qchem/inputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/qchem copying src/pymatgen/io/qchem/outputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/qchem copying src/pymatgen/io/qchem/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/qchem copying src/pymatgen/io/qchem/sets.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/qchem copying src/pymatgen/io/qchem/utils.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/qchem creating build/lib.linux-x86_64-cpython-313/pymatgen/io/pwmat copying src/pymatgen/io/pwmat/inputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/pwmat copying src/pymatgen/io/pwmat/outputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/pwmat copying src/pymatgen/io/pwmat/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/pwmat creating build/lib.linux-x86_64-cpython-313/pymatgen/io/xtb copying src/pymatgen/io/xtb/inputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/xtb copying src/pymatgen/io/xtb/outputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/xtb copying src/pymatgen/io/xtb/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/xtb creating build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps copying src/pymatgen/io/lammps/inputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps copying src/pymatgen/io/lammps/outputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps copying src/pymatgen/io/lammps/data.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps copying src/pymatgen/io/lammps/generators.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps copying src/pymatgen/io/lammps/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps copying src/pymatgen/io/lammps/sets.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps copying src/pymatgen/io/lammps/utils.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps creating build/lib.linux-x86_64-cpython-313/pymatgen/io/cp2k copying src/pymatgen/io/cp2k/inputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/cp2k copying src/pymatgen/io/cp2k/outputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/cp2k copying src/pymatgen/io/cp2k/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/cp2k copying src/pymatgen/io/cp2k/sets.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/cp2k copying src/pymatgen/io/cp2k/utils.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/cp2k creating build/lib.linux-x86_64-cpython-313/pymatgen/io/exciting copying src/pymatgen/io/exciting/inputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/exciting copying src/pymatgen/io/exciting/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/exciting creating build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/jdftxoutfileslice.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/jelstep.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/_output_utils.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/joutstructures.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/inputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/outputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/jdftxinfile_master_format.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/jdftxinfile_default_inputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/sets.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/joutstructure.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/jdftxinfile_ref_options.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/jminsettings.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx copying src/pymatgen/io/jdftx/generic_tags.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx creating build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/optics.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/inputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/outputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/sets.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/help.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp creating build/lib.linux-x86_64-cpython-313/pymatgen/io/feff copying src/pymatgen/io/feff/inputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/feff copying src/pymatgen/io/feff/outputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/feff copying src/pymatgen/io/feff/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/feff copying src/pymatgen/io/feff/sets.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/feff creating build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster copying src/pymatgen/io/lobster/inputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster copying src/pymatgen/io/lobster/outputs.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster copying src/pymatgen/io/lobster/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster copying src/pymatgen/io/lobster/lobsterenv.py -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster creating build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery copying src/pymatgen/apps/battery/plotter.py -> build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery copying src/pymatgen/apps/battery/conversion_battery.py -> build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery copying src/pymatgen/apps/battery/insertion_battery.py -> build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery copying src/pymatgen/apps/battery/analyzer.py -> build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery copying src/pymatgen/apps/battery/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery copying src/pymatgen/apps/battery/battery_abc.py -> build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery creating build/lib.linux-x86_64-cpython-313/pymatgen/apps/borg copying src/pymatgen/apps/borg/queen.py -> build/lib.linux-x86_64-cpython-313/pymatgen/apps/borg copying src/pymatgen/apps/borg/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/apps/borg copying src/pymatgen/apps/borg/hive.py -> build/lib.linux-x86_64-cpython-313/pymatgen/apps/borg creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/interfaces copying src/pymatgen/analysis/interfaces/coherent_interfaces.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/interfaces copying src/pymatgen/analysis/interfaces/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/interfaces copying src/pymatgen/analysis/interfaces/substrate_analyzer.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/interfaces copying src/pymatgen/analysis/interfaces/zsl.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/interfaces creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/topological copying src/pymatgen/analysis/topological/spillage.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/topological copying src/pymatgen/analysis/topological/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/topological creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/xas copying src/pymatgen/analysis/xas/spectrum.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/xas copying src/pymatgen/analysis/xas/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/xas creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction copying src/pymatgen/analysis/structure_prediction/substitutor.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction copying src/pymatgen/analysis/structure_prediction/volume_predictor.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction copying src/pymatgen/analysis/structure_prediction/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction copying src/pymatgen/analysis/structure_prediction/substitution_probability.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction copying src/pymatgen/analysis/structure_prediction/dopant_predictor.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/ferroelectricity copying src/pymatgen/analysis/ferroelectricity/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/ferroelectricity copying src/pymatgen/analysis/ferroelectricity/polarization.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/ferroelectricity creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/solar copying src/pymatgen/analysis/solar/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/solar copying src/pymatgen/analysis/solar/slme.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/solar creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/prototypes copying src/pymatgen/analysis/prototypes/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/prototypes creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction copying src/pymatgen/analysis/diffraction/tem.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction copying src/pymatgen/analysis/diffraction/neutron.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction copying src/pymatgen/analysis/diffraction/core.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction copying src/pymatgen/analysis/diffraction/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction copying src/pymatgen/analysis/diffraction/xrd.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/magnetism copying src/pymatgen/analysis/magnetism/analyzer.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/magnetism copying src/pymatgen/analysis/magnetism/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/magnetism copying src/pymatgen/analysis/magnetism/heisenberg.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/magnetism copying src/pymatgen/analysis/magnetism/jahnteller.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/magnetism creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/elasticity copying src/pymatgen/analysis/elasticity/strain.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/elasticity copying src/pymatgen/analysis/elasticity/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/elasticity copying src/pymatgen/analysis/elasticity/elastic.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/elasticity copying src/pymatgen/analysis/elasticity/stress.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/elasticity creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv copying src/pymatgen/analysis/chemenv/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/scripts_utils.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/math_utils.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/chemenv_config.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/func_utils.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/chemenv_errors.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/graph_utils.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/defs_utils.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/connectivity copying src/pymatgen/analysis/chemenv/connectivity/environment_nodes.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/connectivity copying src/pymatgen/analysis/chemenv/connectivity/structure_connectivity.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/connectivity copying src/pymatgen/analysis/chemenv/connectivity/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/connectivity copying src/pymatgen/analysis/chemenv/connectivity/connected_components.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/connectivity copying src/pymatgen/analysis/chemenv/connectivity/connectivity_finder.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/connectivity creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments copying src/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments copying src/pymatgen/analysis/chemenv/coordination_environments/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments copying src/pymatgen/analysis/chemenv/coordination_environments/voronoi.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments copying src/pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/__init__.py -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/py.typed -> build/lib.linux-x86_64-cpython-313/pymatgen copying src/pymatgen/vis/ElementColorSchemes.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/vis copying src/pymatgen/symmetry/symm_data.json -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/symm_ops.json -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/symm_data_magnetic.sqlite -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/symm_data.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/symmetry/symm_ops.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/symmetry copying src/pymatgen/core/libxc_docs.json -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/reconstructions_archive.json -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/func_groups.json -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/quad_data.json -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/bond_lengths.json -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/core/periodic_table.json.gz -> build/lib.linux-x86_64-cpython-313/pymatgen/core copying src/pymatgen/entries/exp_compounds.json.gz -> build/lib.linux-x86_64-cpython-313/pymatgen/entries copying src/pymatgen/entries/calc_compounds.json.gz -> build/lib.linux-x86_64-cpython-313/pymatgen/entries copying src/pymatgen/entries/MP2020Compatibility.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/entries copying src/pymatgen/entries/MITCompatibility.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/entries copying src/pymatgen/entries/MPCompatibility.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/entries creating build/lib.linux-x86_64-cpython-313/pymatgen/entries/data copying src/pymatgen/entries/data/nist_gas_gf.json -> build/lib.linux-x86_64-cpython-313/pymatgen/entries/data copying src/pymatgen/entries/data/g_els.json -> build/lib.linux-x86_64-cpython-313/pymatgen/entries/data copying src/pymatgen/util/plotly_pd_layouts.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/plotly_interface_rxn_layouts.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util copying src/pymatgen/util/plotly_chempot_layouts.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util creating build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/SrTiO3.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/TlBiSe2.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Pb2TiZrO6.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Li3V2(PO4)3.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/CsCl.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Si_SiO2_Interface.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/BaNiO3.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/LiFePO4.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Li2O.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/TiO2.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/VO2.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/La2CoO4F.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Si.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Graphite.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Sn.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/K2O2.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Li2O2.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/NaFePO4.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/SiO2.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/Li10GeP2S12.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/util/structures/He_BCC.json -> build/lib.linux-x86_64-cpython-313/pymatgen/util/structures copying src/pymatgen/analysis/atomic_subshell_photoionization_cross_sections.csv -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/costdb_elements.csv -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/hhi_data.csv -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/ionic_radii.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/op_params.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/bonds_jmol_ob.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/icsd_bv.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/cn_opt_params.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/bvparam_1991.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/analysis/vesta_cutoffs.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis copying src/pymatgen/io/lammps/CoeffsDataType.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps creating build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/templates copying src/pymatgen/io/lammps/templates/thermalization.template -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/templates copying src/pymatgen/io/lammps/templates/minimization.template -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/templates copying src/pymatgen/io/lammps/templates/md.template -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/templates copying src/pymatgen/io/lammps/templates/msd.template -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/templates copying src/pymatgen/io/vasp/vasp_potcar_file_hashes.json -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/incar_parameters.json -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/vasp_potcar_pymatgen_hashes.json -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/potcar-summary-stats.json.bz2 -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/PBE64Base.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MPSCANRelaxSet.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MP24RelaxSet.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/PBE54Base.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MPHSERelaxSet.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MVLGWSet.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MVLRelax52Set.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MITRelaxSet.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MPAbsorptionSet.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MPRelaxSet.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/vdW_parameters.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/VASPIncarBase.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/vasp/MatPESStaticSet.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp copying src/pymatgen/io/feff/MPELNESSet.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/feff copying src/pymatgen/io/feff/MPXANESSet.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/feff copying src/pymatgen/io/feff/MPEXELFSSet.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/feff copying src/pymatgen/io/feff/MPEXAFSSet.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/feff creating build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster/lobster_basis copying src/pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_min.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster/lobster_basis copying src/pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_standard.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster/lobster_basis copying src/pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_max.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster/lobster_basis copying src/pymatgen/analysis/structure_prediction/DLS_bond_params.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction creating build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction/data copying src/pymatgen/analysis/structure_prediction/data/pair_correlation.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction/data copying src/pymatgen/analysis/structure_prediction/data/lambda.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction/data copying src/pymatgen/analysis/solar/am1.5G.dat -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/solar copying src/pymatgen/analysis/prototypes/wyckoff-position-multiplicities.json.gz -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/prototypes copying src/pymatgen/analysis/prototypes/wyckoff-position-params.json.gz -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/prototypes copying src/pymatgen/analysis/prototypes/wyckoff-position-relabelings.json.gz -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/prototypes copying src/pymatgen/analysis/prototypes/aflow_prototypes.json.gz -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/prototypes copying src/pymatgen/analysis/diffraction/atomic_scattering_params.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction copying src/pymatgen/analysis/diffraction/neutron_scattering_length.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction copying src/pymatgen/analysis/magnetism/default_magmoms.yaml -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/magnetism copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#10.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_1#9.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#5.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_1#8.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#12.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SY#4.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#5.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PB#7.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_3#8.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TC#9.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TL#3.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PCPA#11.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#12.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/A#2.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_1#10.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_1#9.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SMA#9.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/MI#10.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT#12.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DDPN#8.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_2#9.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TI#9.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#5.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HP#12.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PBP#12.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBT#8.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DI#11.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#10.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_2#9.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/I#12.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ST#7.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HD#9.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#11.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ET#7.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SA#8.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6_explicit.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_2#8.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/AC#12.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#4.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#8.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HB#8.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#6.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TY#3.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#4.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_3#9.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/FO#7.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PA#10.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#6.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#8.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBSA#10.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_2#10.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBSA#10.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#11.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/L#2.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#1.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SC#12.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#13.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#20.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#4.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBT#8.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_3#9.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#10.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#9.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TS#3.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HA#12.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/CO#11.json -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/allcg.txt -> build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files running build_ext performance hint: src/pymatgen/util/coord_cython.pyx:34:0: Exception check on 'dot_2d' will always require the GIL to be acquired. Possible solutions: 1. Declare 'dot_2d' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'dot_2d' to allow an error code to be returned. performance hint: src/pymatgen/util/coord_cython.pyx:49:0: Exception check on 'dot_2d_mod' will always require the GIL to be acquired. Possible solutions: 1. Declare 'dot_2d_mod' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'dot_2d_mod' to allow an error code to be returned. warning: src/pymatgen/util/coord_cython.pyx:219:25: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: src/pymatgen/util/coord_cython.pyx:268:41: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. Compiling src/pymatgen/util/coord_cython.pyx because it changed. [1/1] Cythonizing src/pymatgen/util/coord_cython.pyx building 'pymatgen.util.coord_cython' extension creating build/temp.linux-x86_64-cpython-313/src/pymatgen/util x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymatgen-2025.10.7+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c src/pymatgen/util/coord_cython.c -o build/temp.linux-x86_64-cpython-313/src/pymatgen/util/coord_cython.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymatgen-2025.10.7+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/src/pymatgen/util/coord_cython.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/pymatgen/util/coord_cython.cpython-313-x86_64-linux-gnu.so performance hint: src/pymatgen/optimization/neighbors.pyx:525:0: Exception check on 'get_bounds' will always require the GIL to be acquired. Possible solutions: 1. Declare 'get_bounds' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'get_bounds' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:552:0: Exception check on 'get_frac_coords' will always require the GIL to be acquired. Possible solutions: 1. Declare 'get_frac_coords' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'get_frac_coords' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:564:0: Exception check on 'matmul' will always require the GIL to be acquired. Possible solutions: 1. Declare 'matmul' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'matmul' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:582:0: Exception check on 'matrix_inv' will always require the GIL to be acquired. Possible solutions: 1. Declare 'matrix_inv' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'matrix_inv' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:610:0: Exception check on 'get_max_rep' will always require the GIL to be acquired. Possible solutions: 1. Declare 'get_max_rep' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'get_max_rep' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:626:0: Exception check on 'get_reciprocal_lattice' will always require the GIL to be acquired. Possible solutions: 1. Declare 'get_reciprocal_lattice' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'get_reciprocal_lattice' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:641:0: Exception check on 'recip_component' will always require the GIL to be acquired. Possible solutions: 1. Declare 'recip_component' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'recip_component' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:675:0: Exception check on 'cross' will always require the GIL to be acquired. Possible solutions: 1. Declare 'cross' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'cross' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:702:0: Exception check on 'get_max_and_min' will always require the GIL to be acquired. Possible solutions: 1. Declare 'get_max_and_min' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'get_max_and_min' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:726:0: Exception check on 'compute_cube_index' will always require the GIL to be acquired. Possible solutions: 1. Declare 'compute_cube_index' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'compute_cube_index' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:743:0: Exception check on 'three_to_one' will always require the GIL to be acquired. Possible solutions: 1. Declare 'three_to_one' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'three_to_one' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:778:0: Exception check on 'offset_cube' will always require the GIL to be acquired. Possible solutions: 1. Declare 'offset_cube' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'offset_cube' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:496:27: Exception check after calling 'offset_cube' will always require the GIL to be acquired. Possible solutions: 1. Declare 'offset_cube' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'offset_cube' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:541:19: Exception check after calling 'get_max_and_min' will always require the GIL to be acquired. Possible solutions: 1. Declare 'get_max_and_min' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'get_max_and_min' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:561:14: Exception check after calling 'matrix_inv' will always require the GIL to be acquired. Possible solutions: 1. Declare 'matrix_inv' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'matrix_inv' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:562:10: Exception check after calling 'matmul' will always require the GIL to be acquired. Possible solutions: 1. Declare 'matmul' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'matmul' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:635:23: Exception check after calling 'recip_component' will always require the GIL to be acquired. Possible solutions: 1. Declare 'recip_component' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'recip_component' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:655:9: Exception check after calling 'cross' will always require the GIL to be acquired. Possible solutions: 1. Declare 'cross' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'cross' to allow an error code to be returned. Compiling src/pymatgen/optimization/neighbors.pyx because it changed. [1/1] Cythonizing src/pymatgen/optimization/neighbors.pyx building 'pymatgen.optimization.neighbors' extension creating build/temp.linux-x86_64-cpython-313/src/pymatgen/optimization x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymatgen-2025.10.7+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c src/pymatgen/optimization/neighbors.c -o build/temp.linux-x86_64-cpython-313/src/pymatgen/optimization/neighbors.o src/pymatgen/optimization/neighbors.c: In function '__pyx_pf_8pymatgen_12optimization_9neighbors_find_points_in_spheres': src/pymatgen/optimization/neighbors.c:20960:97: warning: passing argument 3 of '__pyx_f_8pymatgen_12optimization_9neighbors_get_bounds' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 20960 | __pyx_f_8pymatgen_12optimization_9neighbors_get_bounds(__pyx_v_frac_coords, __pyx_v_max_rep, (&(*((__pyx_t_5numpy_int64_t const *) ( /* dim=0 */ ((char *) (((__pyx_t_5numpy_int64_t const *) __pyx_v_pbc.data) + __pyx_t_36)) )))), __pyx_v_max_bounds, __pyx_v_min_bounds); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 172, __pyx_L1_error) | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/pymatgen/optimization/neighbors.c:3270:98: note: expected '__pyx_t_5numpy_int64_t *' {aka 'long int *'} but argument is of type 'const __pyx_t_5numpy_int64_t *' {aka 'const long int *'} 3270 | static void __pyx_f_8pymatgen_12optimization_9neighbors_get_bounds(__Pyx_memviewslice, double *, __pyx_t_5numpy_int64_t *, __pyx_t_5numpy_int64_t *, __pyx_t_5numpy_int64_t *); /*proto*/ | ^~~~~~~~~~~~~~~~~~~~~~~~ src/pymatgen/optimization/neighbors.c: In function '__pyx_f_8pymatgen_12optimization_9neighbors_recip_component': src/pymatgen/optimization/neighbors.c:25183:54: warning: passing argument 1 of '__pyx_f_8pymatgen_12optimization_9neighbors_cross' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 25183 | __pyx_f_8pymatgen_12optimization_9neighbors_cross((&(*((double const *) ( /* dim=0 */ ((char *) (((double const *) __pyx_v_a2.data) + __pyx_t_1)) )))), (&(*((double const *) ( /* dim=0 */ ((char *) (((double const *) __pyx_v_a3.data) + __pyx_t_2)) )))), __pyx_v_ai_cross_aj); if (unlikely(__Pyx_ErrOccurredWithGIL())) __PYX_ERR(0, 655, __pyx_L1_error) | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/pymatgen/optimization/neighbors.c:3279:63: note: expected 'double *' but argument is of type 'const double *' 3279 | static void __pyx_f_8pymatgen_12optimization_9neighbors_cross(double *, double *, double *); /*proto*/ | ^~~~~~~~ src/pymatgen/optimization/neighbors.c:25183:158: warning: passing argument 2 of '__pyx_f_8pymatgen_12optimization_9neighbors_cross' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 25183 | __pyx_f_8pymatgen_12optimization_9neighbors_cross((&(*((double const *) ( /* dim=0 */ ((char *) (((double const *) __pyx_v_a2.data) + __pyx_t_1)) )))), (&(*((double const *) ( /* dim=0 */ ((char *) (((double const *) __pyx_v_a3.data) + __pyx_t_2)) )))), __pyx_v_ai_cross_aj); if (unlikely(__Pyx_ErrOccurredWithGIL())) __PYX_ERR(0, 655, __pyx_L1_error) | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/pymatgen/optimization/neighbors.c:3279:73: note: expected 'double *' but argument is of type 'const double *' 3279 | static void __pyx_f_8pymatgen_12optimization_9neighbors_cross(double *, double *, double *); /*proto*/ | ^~~~~~~~ src/pymatgen/optimization/neighbors.c:25193:66: warning: passing argument 1 of '__pyx_f_8pymatgen_12optimization_9neighbors_inner' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 25193 | __pyx_t_3 = __pyx_f_8pymatgen_12optimization_9neighbors_inner((&(*((double const *) ( /* dim=0 */ ((char *) (((double const *) __pyx_v_a1.data) + __pyx_t_2)) )))), __pyx_v_ai_cross_aj); if (unlikely(__pyx_t_3 == ((double)-1) && __Pyx_ErrOccurredWithGIL())) __PYX_ERR(0, 656, __pyx_L1_error) | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/pymatgen/optimization/neighbors.c:3278:65: note: expected 'double *' but argument is of type 'const double *' 3278 | static double __pyx_f_8pymatgen_12optimization_9neighbors_inner(double *, double *); /*proto*/ | ^~~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymatgen-2025.10.7+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/src/pymatgen/optimization/neighbors.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/pymatgen/optimization/neighbors.cpython-313-x86_64-linux-gnu.so installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/pymatgen creating build/bdist.linux-x86_64/wheel/pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/packmol.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io creating build/bdist.linux-x86_64/wheel/pymatgen/io/abinit copying build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit/netcdf.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/abinit copying build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/abinit copying build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/abinit copying build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit/variable.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/abinit copying build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit/pseudos.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/abinit copying build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit/abiobjects.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/abinit copying build/lib.linux-x86_64-cpython-313/pymatgen/io/abinit/abitimer.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/abinit copying build/lib.linux-x86_64-cpython-313/pymatgen/io/cif.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/ase.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/atat.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/res.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/gaussian.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jarvis.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io creating build/bdist.linux-x86_64/wheel/pymatgen/io/qchem copying build/lib.linux-x86_64-cpython-313/pymatgen/io/qchem/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/qchem copying build/lib.linux-x86_64-cpython-313/pymatgen/io/qchem/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/qchem copying build/lib.linux-x86_64-cpython-313/pymatgen/io/qchem/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/qchem copying build/lib.linux-x86_64-cpython-313/pymatgen/io/qchem/sets.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/qchem copying build/lib.linux-x86_64-cpython-313/pymatgen/io/qchem/utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/qchem copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lmto.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/optimade.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/common.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/multiwfn.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io creating build/bdist.linux-x86_64/wheel/pymatgen/io/pwmat copying build/lib.linux-x86_64-cpython-313/pymatgen/io/pwmat/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/pwmat copying build/lib.linux-x86_64-cpython-313/pymatgen/io/pwmat/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/pwmat copying build/lib.linux-x86_64-cpython-313/pymatgen/io/pwmat/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/pwmat copying build/lib.linux-x86_64-cpython-313/pymatgen/io/phonopy.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/zeopp.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io creating build/bdist.linux-x86_64/wheel/pymatgen/io/xtb copying build/lib.linux-x86_64-cpython-313/pymatgen/io/xtb/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/xtb copying build/lib.linux-x86_64-cpython-313/pymatgen/io/xtb/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/xtb copying build/lib.linux-x86_64-cpython-313/pymatgen/io/xtb/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/xtb creating build/bdist.linux-x86_64/wheel/pymatgen/io/lammps copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/CoeffsDataType.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/data.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/generators.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/sets.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps creating build/bdist.linux-x86_64/wheel/pymatgen/io/lammps/templates copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/templates/thermalization.template -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps/templates copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/templates/minimization.template -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps/templates copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/templates/md.template -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps/templates copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lammps/templates/msd.template -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps/templates copying build/lib.linux-x86_64-cpython-313/pymatgen/io/core.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/xr.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io creating build/bdist.linux-x86_64/wheel/pymatgen/io/cp2k copying build/lib.linux-x86_64-cpython-313/pymatgen/io/cp2k/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/cp2k copying build/lib.linux-x86_64-cpython-313/pymatgen/io/cp2k/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/cp2k copying build/lib.linux-x86_64-cpython-313/pymatgen/io/cp2k/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/cp2k copying build/lib.linux-x86_64-cpython-313/pymatgen/io/cp2k/sets.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/cp2k copying build/lib.linux-x86_64-cpython-313/pymatgen/io/cp2k/utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/cp2k copying build/lib.linux-x86_64-cpython-313/pymatgen/io/fiesta.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/icet.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/shengbte.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/wannier90.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io creating build/bdist.linux-x86_64/wheel/pymatgen/io/exciting copying build/lib.linux-x86_64-cpython-313/pymatgen/io/exciting/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/exciting copying build/lib.linux-x86_64-cpython-313/pymatgen/io/exciting/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/exciting creating build/bdist.linux-x86_64/wheel/pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/jdftxoutfileslice.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/jelstep.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/_output_utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/joutstructures.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/jdftxinfile_master_format.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/jdftxinfile_default_inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/sets.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/joutstructure.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/jdftxinfile_ref_options.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/jminsettings.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/jdftx/generic_tags.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/jdftx copying build/lib.linux-x86_64-cpython-313/pymatgen/io/xcrysden.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/babel.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/template.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/prismatic.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io creating build/bdist.linux-x86_64/wheel/pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/vasp_potcar_file_hashes.json -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/PBE64Base.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/optics.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/MPSCANRelaxSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/MP24RelaxSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/PBE54Base.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/incar_parameters.json -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/MPHSERelaxSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/potcar-summary-stats.json.bz2 -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/sets.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/MVLGWSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/vasp_potcar_pymatgen_hashes.json -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/MVLRelax52Set.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/MITRelaxSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/MPAbsorptionSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/MPRelaxSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/vdW_parameters.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/VASPIncarBase.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/MatPESStaticSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/vasp/help.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-313/pymatgen/io/nwchem.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/adf.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/cssr.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/xyz.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io creating build/bdist.linux-x86_64/wheel/pymatgen/io/feff copying build/lib.linux-x86_64-cpython-313/pymatgen/io/feff/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/feff copying build/lib.linux-x86_64-cpython-313/pymatgen/io/feff/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/feff copying build/lib.linux-x86_64-cpython-313/pymatgen/io/feff/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/feff copying build/lib.linux-x86_64-cpython-313/pymatgen/io/feff/MPELNESSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/feff copying build/lib.linux-x86_64-cpython-313/pymatgen/io/feff/sets.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/feff copying build/lib.linux-x86_64-cpython-313/pymatgen/io/feff/MPXANESSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/feff copying build/lib.linux-x86_64-cpython-313/pymatgen/io/feff/MPEXELFSSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/feff copying build/lib.linux-x86_64-cpython-313/pymatgen/io/feff/MPEXAFSSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/feff creating build/bdist.linux-x86_64/wheel/pymatgen/io/lobster copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lobster copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lobster copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lobster creating build/bdist.linux-x86_64/wheel/pymatgen/io/lobster/lobster_basis copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_min.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lobster/lobster_basis copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_standard.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lobster/lobster_basis copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_max.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lobster/lobster_basis copying build/lib.linux-x86_64-cpython-313/pymatgen/io/lobster/lobsterenv.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lobster copying build/lib.linux-x86_64-cpython-313/pymatgen/io/openff.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-313/pymatgen/io/pwscf.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io creating build/bdist.linux-x86_64/wheel/pymatgen/apps creating build/bdist.linux-x86_64/wheel/pymatgen/apps/battery copying build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery/plotter.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/battery copying build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery/conversion_battery.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/battery copying build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery/insertion_battery.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/battery copying build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery/analyzer.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/battery copying build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/battery copying build/lib.linux-x86_64-cpython-313/pymatgen/apps/battery/battery_abc.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/battery creating build/bdist.linux-x86_64/wheel/pymatgen/apps/borg copying build/lib.linux-x86_64-cpython-313/pymatgen/apps/borg/queen.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/borg copying build/lib.linux-x86_64-cpython-313/pymatgen/apps/borg/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/borg copying build/lib.linux-x86_64-cpython-313/pymatgen/apps/borg/hive.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/borg copying build/lib.linux-x86_64-cpython-313/pymatgen/apps/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps creating build/bdist.linux-x86_64/wheel/pymatgen/vis copying build/lib.linux-x86_64-cpython-313/pymatgen/vis/ElementColorSchemes.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/vis copying build/lib.linux-x86_64-cpython-313/pymatgen/vis/structure_vtk.py -> build/bdist.linux-x86_64/wheel/./pymatgen/vis copying build/lib.linux-x86_64-cpython-313/pymatgen/vis/plotters.py -> build/bdist.linux-x86_64/wheel/./pymatgen/vis copying build/lib.linux-x86_64-cpython-313/pymatgen/vis/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/vis copying build/lib.linux-x86_64-cpython-313/pymatgen/vis/structure_chemview.py -> build/bdist.linux-x86_64/wheel/./pymatgen/vis creating build/bdist.linux-x86_64/wheel/pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure/dos.py -> build/bdist.linux-x86_64/wheel/./pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure/plotter.py -> build/bdist.linux-x86_64/wheel/./pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure/boltztrap.py -> build/bdist.linux-x86_64/wheel/./pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure/bandstructure.py -> build/bdist.linux-x86_64/wheel/./pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure/boltztrap2.py -> build/bdist.linux-x86_64/wheel/./pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure/core.py -> build/bdist.linux-x86_64/wheel/./pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure/cohp.py -> build/bdist.linux-x86_64/wheel/./pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-313/pymatgen/electronic_structure/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/electronic_structure creating build/bdist.linux-x86_64/wheel/pymatgen/ext copying build/lib.linux-x86_64-cpython-313/pymatgen/ext/optimade.py -> build/bdist.linux-x86_64/wheel/./pymatgen/ext copying build/lib.linux-x86_64-cpython-313/pymatgen/ext/cod.py -> build/bdist.linux-x86_64/wheel/./pymatgen/ext copying build/lib.linux-x86_64-cpython-313/pymatgen/ext/matproj.py -> build/bdist.linux-x86_64/wheel/./pymatgen/ext creating build/bdist.linux-x86_64/wheel/pymatgen/optimization copying build/lib.linux-x86_64-cpython-313/pymatgen/optimization/neighbors.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./pymatgen/optimization copying build/lib.linux-x86_64-cpython-313/pymatgen/optimization/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/optimization copying build/lib.linux-x86_64-cpython-313/pymatgen/dao.py -> build/bdist.linux-x86_64/wheel/./pymatgen creating build/bdist.linux-x86_64/wheel/pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/bandstructure.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/kpath.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/analyzer.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/maggroups.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/symm_data.json -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/structure.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/groups.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/symm_data.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/symm_ops.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/symm_data_magnetic.sqlite -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/symm_ops.json -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/settings.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-313/pymatgen/symmetry/site_symmetries.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry creating build/bdist.linux-x86_64/wheel/pymatgen/command_line copying build/lib.linux-x86_64-cpython-313/pymatgen/command_line/enumlib_caller.py -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line copying build/lib.linux-x86_64-cpython-313/pymatgen/command_line/bader_caller.py -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line copying build/lib.linux-x86_64-cpython-313/pymatgen/command_line/mcsqs_caller.py -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line copying build/lib.linux-x86_64-cpython-313/pymatgen/command_line/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line copying build/lib.linux-x86_64-cpython-313/pymatgen/command_line/critic2_caller.py -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line copying build/lib.linux-x86_64-cpython-313/pymatgen/command_line/gulp_caller.py -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line copying build/lib.linux-x86_64-cpython-313/pymatgen/command_line/vampire_caller.py -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line copying build/lib.linux-x86_64-cpython-313/pymatgen/command_line/chargemol_caller.py -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line creating build/bdist.linux-x86_64/wheel/pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/periodic_table.json.gz -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/surface.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/libxc_docs.json -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/molecular_orbitals.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/reconstructions_archive.json -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/bonds.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/units.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/xcfunc.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/func_groups.json -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/spectrum.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/composition.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/interface.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/periodic_table.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/lattice.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/libxcfunc.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/structure.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/quad_data.json -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/ion.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/bond_lengths.json -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/tensors.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/trajectory.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/sites.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-313/pymatgen/core/operations.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core creating build/bdist.linux-x86_64/wheel/pymatgen/entries copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/exp_compounds.json.gz -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/MP2020Compatibility.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/computed_entries.py -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/mixing_scheme.py -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/calc_compounds.json.gz -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/exp_entries.py -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/MITCompatibility.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/correction_calculator.py -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/compatibility.py -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/MPCompatibility.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/entries creating build/bdist.linux-x86_64/wheel/pymatgen/entries/data copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/data/nist_gas_gf.json -> build/bdist.linux-x86_64/wheel/./pymatgen/entries/data copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/data/g_els.json -> build/bdist.linux-x86_64/wheel/./pymatgen/entries/data copying build/lib.linux-x86_64-cpython-313/pymatgen/entries/entry_tools.py -> build/bdist.linux-x86_64/wheel/./pymatgen/entries creating build/bdist.linux-x86_64/wheel/pymatgen/phonon copying build/lib.linux-x86_64-cpython-313/pymatgen/phonon/dos.py -> build/bdist.linux-x86_64/wheel/./pymatgen/phonon copying build/lib.linux-x86_64-cpython-313/pymatgen/phonon/plotter.py -> build/bdist.linux-x86_64/wheel/./pymatgen/phonon copying build/lib.linux-x86_64-cpython-313/pymatgen/phonon/bandstructure.py -> build/bdist.linux-x86_64/wheel/./pymatgen/phonon copying build/lib.linux-x86_64-cpython-313/pymatgen/phonon/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/phonon copying build/lib.linux-x86_64-cpython-313/pymatgen/phonon/ir_spectra.py -> build/bdist.linux-x86_64/wheel/./pymatgen/phonon copying build/lib.linux-x86_64-cpython-313/pymatgen/phonon/gruneisen.py -> build/bdist.linux-x86_64/wheel/./pymatgen/phonon copying build/lib.linux-x86_64-cpython-313/pymatgen/phonon/thermal_displacements.py -> build/bdist.linux-x86_64/wheel/./pymatgen/phonon copying build/lib.linux-x86_64-cpython-313/pymatgen/py.typed -> build/bdist.linux-x86_64/wheel/./pymatgen creating build/bdist.linux-x86_64/wheel/pymatgen/transformations copying build/lib.linux-x86_64-cpython-313/pymatgen/transformations/site_transformations.py -> build/bdist.linux-x86_64/wheel/./pymatgen/transformations copying build/lib.linux-x86_64-cpython-313/pymatgen/transformations/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/transformations copying build/lib.linux-x86_64-cpython-313/pymatgen/transformations/standard_transformations.py -> build/bdist.linux-x86_64/wheel/./pymatgen/transformations copying build/lib.linux-x86_64-cpython-313/pymatgen/transformations/transformation_abc.py -> build/bdist.linux-x86_64/wheel/./pymatgen/transformations copying build/lib.linux-x86_64-cpython-313/pymatgen/transformations/advanced_transformations.py -> build/bdist.linux-x86_64/wheel/./pymatgen/transformations creating build/bdist.linux-x86_64/wheel/pymatgen/util creating build/bdist.linux-x86_64/wheel/pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/SrTiO3.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/TlBiSe2.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/Pb2TiZrO6.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/Li3V2(PO4)3.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/CsCl.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/Si_SiO2_Interface.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/BaNiO3.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/LiFePO4.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/Li2O.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/TiO2.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/VO2.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/La2CoO4F.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/Si.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/Graphite.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/Sn.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/K2O2.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/Li2O2.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/NaFePO4.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/SiO2.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/Li10GeP2S12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/structures/He_BCC.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-313/pymatgen/util/plotly_pd_layouts.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/plotly_interface_rxn_layouts.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/provenance.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/num.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/graph_hashing.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/testing.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/string.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/misc.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/due.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/joblib.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/plotly_chempot_layouts.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/typing.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/coord.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/plotting.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/io_utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/numba.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-313/pymatgen/util/coord_cython.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./pymatgen/util creating build/bdist.linux-x86_64/wheel/pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/atomic_subshell_photoionization_cross_sections.csv -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/quasirrho.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/excitation.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/piezo.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/costdb_elements.csv -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/op_params.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/bonds_jmol_ob.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/eos.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/thermochemistry.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/interfaces copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/interfaces/coherent_interfaces.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/interfaces copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/interfaces/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/interfaces copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/interfaces/substrate_analyzer.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/interfaces copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/interfaces/zsl.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/interfaces copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/hhi.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/molecule_structure_comparator.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/transition_state.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/optics.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/wulff.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/bond_dissociation.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/adsorption.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chempot_diagram.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/topological copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/topological/spillage.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/topological copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/topological/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/topological copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/cost.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/energy_models.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/ewald.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/piezo_sensitivity.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/xas copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/xas/spectrum.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/xas copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/xas/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/xas creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/structure_prediction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction/substitutor.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/structure_prediction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction/volume_predictor.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/structure_prediction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/structure_prediction creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/structure_prediction/data copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction/data/pair_correlation.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/structure_prediction/data copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction/data/lambda.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/structure_prediction/data copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction/DLS_bond_params.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/structure_prediction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction/substitution_probability.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/structure_prediction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_prediction/dopant_predictor.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/structure_prediction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/icsd_bv.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/cn_opt_params.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_analyzer.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/pourbaix_diagram.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/surface_analysis.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/ferroelectricity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/ferroelectricity/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/ferroelectricity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/ferroelectricity/polarization.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/ferroelectricity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/structure_matcher.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/solar copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/solar/am1.5G.dat -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/solar copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/solar/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/solar copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/solar/slme.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/solar creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/prototypes copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/prototypes/wyckoff-position-multiplicities.json.gz -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/prototypes copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/prototypes/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/prototypes copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/prototypes/wyckoff-position-params.json.gz -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/prototypes copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/prototypes/wyckoff-position-relabelings.json.gz -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/prototypes copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/prototypes/aflow_prototypes.json.gz -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/prototypes creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/diffraction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction/tem.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction/atomic_scattering_params.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction/neutron.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction/core.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction/neutron_scattering_length.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/diffraction/xrd.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/bond_valence.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/reaction_calculator.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/hhi_data.csv -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/phase_diagram.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/xps.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/ionic_radii.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/local_env.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/disorder.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/molecule_matcher.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/fragmenter.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/quasiharmonic.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/graphs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/bvparam_1991.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/dimensionality.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/vesta_cutoffs.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/magnetism copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/magnetism/analyzer.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/magnetism copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/magnetism/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/magnetism copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/magnetism/heisenberg.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/magnetism copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/magnetism/default_magmoms.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/magnetism copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/magnetism/jahnteller.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/magnetism creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/elasticity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/elasticity/strain.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/elasticity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/elasticity/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/elasticity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/elasticity/elastic.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/elasticity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/elasticity/stress.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/elasticity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/functional_groups.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/chemenv creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils/scripts_utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils/math_utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils/chemenv_config.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils/func_utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils/chemenv_errors.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils/graph_utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/utils/defs_utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/chemenv/connectivity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/connectivity/environment_nodes.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/connectivity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/connectivity/structure_connectivity.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/connectivity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/connectivity/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/connectivity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/connectivity/connected_components.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/connectivity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/connectivity/connectivity_finder.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/connectivity copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/chemenv/coordination_environments copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_1#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#5.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_1#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SY#4.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#5.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PB#7.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_3#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TC#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TL#3.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PCPA#11.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/A#2.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_1#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_1#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/allcg.txt -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SMA#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/MI#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DDPN#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_2#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TI#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#5.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HP#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PBP#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBT#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DI#11.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_2#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/I#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ST#7.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HD#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#11.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ET#7.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SA#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6_explicit.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_2#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/AC#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#4.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HB#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#6.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TY#3.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#4.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_3#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/FO#7.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PA#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#6.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBSA#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_2#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBSA#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#11.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/L#2.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#1.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SC#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#13.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#20.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#4.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBT#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_3#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TS#3.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HA#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/CO#11.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/voronoi.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/nmr.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-313/pymatgen/analysis/interface_reactions.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/alchemy copying build/lib.linux-x86_64-cpython-313/pymatgen/alchemy/materials.py -> build/bdist.linux-x86_64/wheel/./pymatgen/alchemy copying build/lib.linux-x86_64-cpython-313/pymatgen/alchemy/filters.py -> build/bdist.linux-x86_64/wheel/./pymatgen/alchemy copying build/lib.linux-x86_64-cpython-313/pymatgen/alchemy/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/alchemy copying build/lib.linux-x86_64-cpython-313/pymatgen/alchemy/transmuters.py -> build/bdist.linux-x86_64/wheel/./pymatgen/alchemy creating build/bdist.linux-x86_64/wheel/pymatgen/cli copying build/lib.linux-x86_64-cpython-313/pymatgen/cli/pmg.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-313/pymatgen/cli/pmg_analyze.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-313/pymatgen/cli/pmg_potcar.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-313/pymatgen/cli/pmg_config.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-313/pymatgen/cli/get_environment.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-313/pymatgen/cli/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-313/pymatgen/cli/feff_plot_cross_section.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-313/pymatgen/cli/feff_plot_dos.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-313/pymatgen/cli/pmg_plot.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-313/pymatgen/cli/pmg_structure.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli running install_egg_info running egg_info creating src/pymatgen.egg-info writing src/pymatgen.egg-info/PKG-INFO /usr/lib/python3/dist-packages/setuptools/_core_metadata.py:163: SetuptoolsDeprecationWarning: Invalid config. !! ******************************************************************************** newlines are not allowed in `summary` and will break in the future ******************************************************************************** !! write_field('Summary', single_line(summary)) writing dependency_links to src/pymatgen.egg-info/dependency_links.txt writing entry points to src/pymatgen.egg-info/entry_points.txt writing requirements to src/pymatgen.egg-info/requires.txt writing top-level names to src/pymatgen.egg-info/top_level.txt writing manifest file 'src/pymatgen.egg-info/SOURCES.txt' reading manifest file 'src/pymatgen.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'src/pymatgen.egg-info/SOURCES.txt' Copying src/pymatgen.egg-info to build/bdist.linux-x86_64/wheel/./pymatgen-2025.10.7.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/pymatgen-2025.10.7.dist-info/WHEEL creating '/build/reproducible-path/pymatgen-2025.10.7+dfsg1/.pybuild/cpython3_3.13_pymatgen/.tmp-j1pdq9o2/pymatgen-2025.10.7-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'pymatgen/dao.py' adding 'pymatgen/py.typed' adding 'pymatgen/alchemy/__init__.py' adding 'pymatgen/alchemy/filters.py' adding 'pymatgen/alchemy/materials.py' adding 'pymatgen/alchemy/transmuters.py' adding 'pymatgen/analysis/adsorption.py' adding 'pymatgen/analysis/atomic_subshell_photoionization_cross_sections.csv' adding 'pymatgen/analysis/bond_dissociation.py' adding 'pymatgen/analysis/bond_valence.py' adding 'pymatgen/analysis/bonds_jmol_ob.yaml' adding 'pymatgen/analysis/bvparam_1991.yaml' adding 'pymatgen/analysis/chempot_diagram.py' adding 'pymatgen/analysis/cn_opt_params.yaml' adding 'pymatgen/analysis/cost.py' adding 'pymatgen/analysis/costdb_elements.csv' adding 'pymatgen/analysis/dimensionality.py' adding 'pymatgen/analysis/disorder.py' adding 'pymatgen/analysis/energy_models.py' adding 'pymatgen/analysis/eos.py' adding 'pymatgen/analysis/ewald.py' adding 'pymatgen/analysis/excitation.py' adding 'pymatgen/analysis/fragmenter.py' adding 'pymatgen/analysis/functional_groups.py' adding 'pymatgen/analysis/graphs.py' adding 'pymatgen/analysis/hhi.py' adding 'pymatgen/analysis/hhi_data.csv' adding 'pymatgen/analysis/icsd_bv.yaml' adding 'pymatgen/analysis/interface_reactions.py' adding 'pymatgen/analysis/ionic_radii.json' adding 'pymatgen/analysis/local_env.py' adding 'pymatgen/analysis/molecule_matcher.py' adding 'pymatgen/analysis/molecule_structure_comparator.py' adding 'pymatgen/analysis/nmr.py' adding 'pymatgen/analysis/op_params.yaml' adding 'pymatgen/analysis/optics.py' adding 'pymatgen/analysis/phase_diagram.py' adding 'pymatgen/analysis/piezo.py' adding 'pymatgen/analysis/piezo_sensitivity.py' adding 'pymatgen/analysis/pourbaix_diagram.py' adding 'pymatgen/analysis/quasiharmonic.py' adding 'pymatgen/analysis/quasirrho.py' adding 'pymatgen/analysis/reaction_calculator.py' adding 'pymatgen/analysis/structure_analyzer.py' adding 'pymatgen/analysis/structure_matcher.py' adding 'pymatgen/analysis/surface_analysis.py' adding 'pymatgen/analysis/thermochemistry.py' adding 'pymatgen/analysis/transition_state.py' adding 'pymatgen/analysis/vesta_cutoffs.yaml' adding 'pymatgen/analysis/wulff.py' adding 'pymatgen/analysis/xps.py' adding 'pymatgen/analysis/chemenv/__init__.py' adding 'pymatgen/analysis/chemenv/connectivity/__init__.py' adding 'pymatgen/analysis/chemenv/connectivity/connected_components.py' adding 'pymatgen/analysis/chemenv/connectivity/connectivity_finder.py' adding 'pymatgen/analysis/chemenv/connectivity/environment_nodes.py' adding 'pymatgen/analysis/chemenv/connectivity/structure_connectivity.py' adding 'pymatgen/analysis/chemenv/coordination_environments/__init__.py' adding 'pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py' adding 'pymatgen/analysis/chemenv/coordination_environments/structure_environments.py' adding 'pymatgen/analysis/chemenv/coordination_environments/voronoi.py' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/A#2.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/AC#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_1#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_2#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_3#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_1#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_2#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/CO#11.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#20.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DDPN#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DI#11.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ET#7.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/FO#7.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#11.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HA#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HB#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HD#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HP#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/I#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/L#2.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/MI#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6_explicit.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PA#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PB#7.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PBP#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PCPA#11.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#5.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#6.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#1.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#4.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#5.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SA#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBSA#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBT#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SC#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#11.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#13.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SMA#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#4.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ST#7.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SY#4.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#4.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#5.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#6.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBSA#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBT#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TC#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TI#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TL#3.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_1#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_2#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_3#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TS#3.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_1#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_2#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_3#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TY#3.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/__init__.py' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/allcg.txt' adding 'pymatgen/analysis/chemenv/utils/__init__.py' adding 'pymatgen/analysis/chemenv/utils/chemenv_config.py' adding 'pymatgen/analysis/chemenv/utils/chemenv_errors.py' adding 'pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py' adding 'pymatgen/analysis/chemenv/utils/defs_utils.py' adding 'pymatgen/analysis/chemenv/utils/func_utils.py' adding 'pymatgen/analysis/chemenv/utils/graph_utils.py' adding 'pymatgen/analysis/chemenv/utils/math_utils.py' adding 'pymatgen/analysis/chemenv/utils/scripts_utils.py' adding 'pymatgen/analysis/diffraction/__init__.py' adding 'pymatgen/analysis/diffraction/atomic_scattering_params.json' adding 'pymatgen/analysis/diffraction/core.py' adding 'pymatgen/analysis/diffraction/neutron.py' adding 'pymatgen/analysis/diffraction/neutron_scattering_length.json' adding 'pymatgen/analysis/diffraction/tem.py' adding 'pymatgen/analysis/diffraction/xrd.py' adding 'pymatgen/analysis/elasticity/__init__.py' adding 'pymatgen/analysis/elasticity/elastic.py' adding 'pymatgen/analysis/elasticity/strain.py' adding 'pymatgen/analysis/elasticity/stress.py' adding 'pymatgen/analysis/ferroelectricity/__init__.py' adding 'pymatgen/analysis/ferroelectricity/polarization.py' adding 'pymatgen/analysis/interfaces/__init__.py' adding 'pymatgen/analysis/interfaces/coherent_interfaces.py' adding 'pymatgen/analysis/interfaces/substrate_analyzer.py' adding 'pymatgen/analysis/interfaces/zsl.py' adding 'pymatgen/analysis/magnetism/__init__.py' adding 'pymatgen/analysis/magnetism/analyzer.py' adding 'pymatgen/analysis/magnetism/default_magmoms.yaml' adding 'pymatgen/analysis/magnetism/heisenberg.py' adding 'pymatgen/analysis/magnetism/jahnteller.py' adding 'pymatgen/analysis/prototypes/__init__.py' adding 'pymatgen/analysis/prototypes/aflow_prototypes.json.gz' adding 'pymatgen/analysis/prototypes/wyckoff-position-multiplicities.json.gz' adding 'pymatgen/analysis/prototypes/wyckoff-position-params.json.gz' adding 'pymatgen/analysis/prototypes/wyckoff-position-relabelings.json.gz' adding 'pymatgen/analysis/solar/__init__.py' adding 'pymatgen/analysis/solar/am1.5G.dat' adding 'pymatgen/analysis/solar/slme.py' adding 'pymatgen/analysis/structure_prediction/DLS_bond_params.yaml' adding 'pymatgen/analysis/structure_prediction/__init__.py' adding 'pymatgen/analysis/structure_prediction/dopant_predictor.py' adding 'pymatgen/analysis/structure_prediction/substitution_probability.py' adding 'pymatgen/analysis/structure_prediction/substitutor.py' adding 'pymatgen/analysis/structure_prediction/volume_predictor.py' adding 'pymatgen/analysis/structure_prediction/data/lambda.json' adding 'pymatgen/analysis/structure_prediction/data/pair_correlation.json' adding 'pymatgen/analysis/topological/__init__.py' adding 'pymatgen/analysis/topological/spillage.py' adding 'pymatgen/analysis/xas/__init__.py' adding 'pymatgen/analysis/xas/spectrum.py' adding 'pymatgen/apps/__init__.py' adding 'pymatgen/apps/battery/__init__.py' adding 'pymatgen/apps/battery/analyzer.py' adding 'pymatgen/apps/battery/battery_abc.py' adding 'pymatgen/apps/battery/conversion_battery.py' adding 'pymatgen/apps/battery/insertion_battery.py' adding 'pymatgen/apps/battery/plotter.py' adding 'pymatgen/apps/borg/__init__.py' adding 'pymatgen/apps/borg/hive.py' adding 'pymatgen/apps/borg/queen.py' adding 'pymatgen/cli/__init__.py' adding 'pymatgen/cli/feff_plot_cross_section.py' adding 'pymatgen/cli/feff_plot_dos.py' adding 'pymatgen/cli/get_environment.py' adding 'pymatgen/cli/pmg.py' adding 'pymatgen/cli/pmg_analyze.py' adding 'pymatgen/cli/pmg_config.py' adding 'pymatgen/cli/pmg_plot.py' adding 'pymatgen/cli/pmg_potcar.py' adding 'pymatgen/cli/pmg_structure.py' adding 'pymatgen/command_line/__init__.py' adding 'pymatgen/command_line/bader_caller.py' adding 'pymatgen/command_line/chargemol_caller.py' adding 'pymatgen/command_line/critic2_caller.py' adding 'pymatgen/command_line/enumlib_caller.py' adding 'pymatgen/command_line/gulp_caller.py' adding 'pymatgen/command_line/mcsqs_caller.py' adding 'pymatgen/command_line/vampire_caller.py' adding 'pymatgen/core/__init__.py' adding 'pymatgen/core/bond_lengths.json' adding 'pymatgen/core/bonds.py' adding 'pymatgen/core/composition.py' adding 'pymatgen/core/func_groups.json' adding 'pymatgen/core/interface.py' adding 'pymatgen/core/ion.py' adding 'pymatgen/core/lattice.py' adding 'pymatgen/core/libxc_docs.json' adding 'pymatgen/core/libxcfunc.py' adding 'pymatgen/core/molecular_orbitals.py' adding 'pymatgen/core/operations.py' adding 'pymatgen/core/periodic_table.json.gz' adding 'pymatgen/core/periodic_table.py' adding 'pymatgen/core/quad_data.json' adding 'pymatgen/core/reconstructions_archive.json' adding 'pymatgen/core/sites.py' adding 'pymatgen/core/spectrum.py' adding 'pymatgen/core/structure.py' adding 'pymatgen/core/surface.py' adding 'pymatgen/core/tensors.py' adding 'pymatgen/core/trajectory.py' adding 'pymatgen/core/units.py' adding 'pymatgen/core/xcfunc.py' adding 'pymatgen/electronic_structure/__init__.py' adding 'pymatgen/electronic_structure/bandstructure.py' adding 'pymatgen/electronic_structure/boltztrap.py' adding 'pymatgen/electronic_structure/boltztrap2.py' adding 'pymatgen/electronic_structure/cohp.py' adding 'pymatgen/electronic_structure/core.py' adding 'pymatgen/electronic_structure/dos.py' adding 'pymatgen/electronic_structure/plotter.py' adding 'pymatgen/entries/MITCompatibility.yaml' adding 'pymatgen/entries/MP2020Compatibility.yaml' adding 'pymatgen/entries/MPCompatibility.yaml' adding 'pymatgen/entries/__init__.py' adding 'pymatgen/entries/calc_compounds.json.gz' adding 'pymatgen/entries/compatibility.py' adding 'pymatgen/entries/computed_entries.py' adding 'pymatgen/entries/correction_calculator.py' adding 'pymatgen/entries/entry_tools.py' adding 'pymatgen/entries/exp_compounds.json.gz' adding 'pymatgen/entries/exp_entries.py' adding 'pymatgen/entries/mixing_scheme.py' adding 'pymatgen/entries/data/g_els.json' adding 'pymatgen/entries/data/nist_gas_gf.json' adding 'pymatgen/ext/cod.py' adding 'pymatgen/ext/matproj.py' adding 'pymatgen/ext/optimade.py' adding 'pymatgen/io/adf.py' adding 'pymatgen/io/ase.py' adding 'pymatgen/io/atat.py' adding 'pymatgen/io/babel.py' adding 'pymatgen/io/cif.py' adding 'pymatgen/io/common.py' adding 'pymatgen/io/core.py' adding 'pymatgen/io/cssr.py' adding 'pymatgen/io/fiesta.py' adding 'pymatgen/io/gaussian.py' adding 'pymatgen/io/icet.py' adding 'pymatgen/io/jarvis.py' adding 'pymatgen/io/lmto.py' adding 'pymatgen/io/multiwfn.py' adding 'pymatgen/io/nwchem.py' adding 'pymatgen/io/openff.py' adding 'pymatgen/io/optimade.py' adding 'pymatgen/io/packmol.py' adding 'pymatgen/io/phonopy.py' adding 'pymatgen/io/prismatic.py' adding 'pymatgen/io/pwscf.py' adding 'pymatgen/io/res.py' adding 'pymatgen/io/shengbte.py' adding 'pymatgen/io/template.py' adding 'pymatgen/io/wannier90.py' adding 'pymatgen/io/xcrysden.py' adding 'pymatgen/io/xr.py' adding 'pymatgen/io/xyz.py' adding 'pymatgen/io/zeopp.py' adding 'pymatgen/io/abinit/__init__.py' adding 'pymatgen/io/abinit/abiobjects.py' adding 'pymatgen/io/abinit/abitimer.py' adding 'pymatgen/io/abinit/inputs.py' adding 'pymatgen/io/abinit/netcdf.py' adding 'pymatgen/io/abinit/pseudos.py' adding 'pymatgen/io/abinit/variable.py' adding 'pymatgen/io/cp2k/__init__.py' adding 'pymatgen/io/cp2k/inputs.py' adding 'pymatgen/io/cp2k/outputs.py' adding 'pymatgen/io/cp2k/sets.py' adding 'pymatgen/io/cp2k/utils.py' adding 'pymatgen/io/exciting/__init__.py' adding 'pymatgen/io/exciting/inputs.py' adding 'pymatgen/io/feff/MPELNESSet.yaml' adding 'pymatgen/io/feff/MPEXAFSSet.yaml' adding 'pymatgen/io/feff/MPEXELFSSet.yaml' adding 'pymatgen/io/feff/MPXANESSet.yaml' adding 'pymatgen/io/feff/__init__.py' adding 'pymatgen/io/feff/inputs.py' adding 'pymatgen/io/feff/outputs.py' adding 'pymatgen/io/feff/sets.py' adding 'pymatgen/io/jdftx/__init__.py' adding 'pymatgen/io/jdftx/_output_utils.py' adding 'pymatgen/io/jdftx/generic_tags.py' adding 'pymatgen/io/jdftx/inputs.py' adding 'pymatgen/io/jdftx/jdftxinfile_default_inputs.py' adding 'pymatgen/io/jdftx/jdftxinfile_master_format.py' adding 'pymatgen/io/jdftx/jdftxinfile_ref_options.py' adding 'pymatgen/io/jdftx/jdftxoutfileslice.py' adding 'pymatgen/io/jdftx/jelstep.py' adding 'pymatgen/io/jdftx/jminsettings.py' adding 'pymatgen/io/jdftx/joutstructure.py' adding 'pymatgen/io/jdftx/joutstructures.py' adding 'pymatgen/io/jdftx/outputs.py' adding 'pymatgen/io/jdftx/sets.py' adding 'pymatgen/io/lammps/CoeffsDataType.yaml' adding 'pymatgen/io/lammps/__init__.py' adding 'pymatgen/io/lammps/data.py' adding 'pymatgen/io/lammps/generators.py' adding 'pymatgen/io/lammps/inputs.py' adding 'pymatgen/io/lammps/outputs.py' adding 'pymatgen/io/lammps/sets.py' adding 'pymatgen/io/lammps/utils.py' adding 'pymatgen/io/lammps/templates/md.template' adding 'pymatgen/io/lammps/templates/minimization.template' adding 'pymatgen/io/lammps/templates/msd.template' adding 'pymatgen/io/lammps/templates/thermalization.template' adding 'pymatgen/io/lobster/__init__.py' adding 'pymatgen/io/lobster/inputs.py' adding 'pymatgen/io/lobster/lobsterenv.py' adding 'pymatgen/io/lobster/outputs.py' adding 'pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_max.yaml' adding 'pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_min.yaml' adding 'pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_standard.yaml' adding 'pymatgen/io/pwmat/__init__.py' adding 'pymatgen/io/pwmat/inputs.py' adding 'pymatgen/io/pwmat/outputs.py' adding 'pymatgen/io/qchem/__init__.py' adding 'pymatgen/io/qchem/inputs.py' adding 'pymatgen/io/qchem/outputs.py' adding 'pymatgen/io/qchem/sets.py' adding 'pymatgen/io/qchem/utils.py' adding 'pymatgen/io/vasp/MITRelaxSet.yaml' adding 'pymatgen/io/vasp/MP24RelaxSet.yaml' adding 'pymatgen/io/vasp/MPAbsorptionSet.yaml' adding 'pymatgen/io/vasp/MPHSERelaxSet.yaml' adding 'pymatgen/io/vasp/MPRelaxSet.yaml' adding 'pymatgen/io/vasp/MPSCANRelaxSet.yaml' adding 'pymatgen/io/vasp/MVLGWSet.yaml' adding 'pymatgen/io/vasp/MVLRelax52Set.yaml' adding 'pymatgen/io/vasp/MatPESStaticSet.yaml' adding 'pymatgen/io/vasp/PBE54Base.yaml' adding 'pymatgen/io/vasp/PBE64Base.yaml' adding 'pymatgen/io/vasp/VASPIncarBase.yaml' adding 'pymatgen/io/vasp/__init__.py' adding 'pymatgen/io/vasp/help.py' adding 'pymatgen/io/vasp/incar_parameters.json' adding 'pymatgen/io/vasp/inputs.py' adding 'pymatgen/io/vasp/optics.py' adding 'pymatgen/io/vasp/outputs.py' adding 'pymatgen/io/vasp/potcar-summary-stats.json.bz2' adding 'pymatgen/io/vasp/sets.py' adding 'pymatgen/io/vasp/vasp_potcar_file_hashes.json' adding 'pymatgen/io/vasp/vasp_potcar_pymatgen_hashes.json' adding 'pymatgen/io/vasp/vdW_parameters.yaml' adding 'pymatgen/io/xtb/__init__.py' adding 'pymatgen/io/xtb/inputs.py' adding 'pymatgen/io/xtb/outputs.py' adding 'pymatgen/optimization/__init__.py' adding 'pymatgen/optimization/neighbors.cpython-313-x86_64-linux-gnu.so' adding 'pymatgen/phonon/__init__.py' adding 'pymatgen/phonon/bandstructure.py' adding 'pymatgen/phonon/dos.py' adding 'pymatgen/phonon/gruneisen.py' adding 'pymatgen/phonon/ir_spectra.py' adding 'pymatgen/phonon/plotter.py' adding 'pymatgen/phonon/thermal_displacements.py' adding 'pymatgen/symmetry/__init__.py' adding 'pymatgen/symmetry/analyzer.py' adding 'pymatgen/symmetry/bandstructure.py' adding 'pymatgen/symmetry/groups.py' adding 'pymatgen/symmetry/kpath.py' adding 'pymatgen/symmetry/maggroups.py' adding 'pymatgen/symmetry/settings.py' adding 'pymatgen/symmetry/site_symmetries.py' adding 'pymatgen/symmetry/structure.py' adding 'pymatgen/symmetry/symm_data.json' adding 'pymatgen/symmetry/symm_data.yaml' adding 'pymatgen/symmetry/symm_data_magnetic.sqlite' adding 'pymatgen/symmetry/symm_ops.json' adding 'pymatgen/symmetry/symm_ops.yaml' adding 'pymatgen/transformations/__init__.py' adding 'pymatgen/transformations/advanced_transformations.py' adding 'pymatgen/transformations/site_transformations.py' adding 'pymatgen/transformations/standard_transformations.py' adding 'pymatgen/transformations/transformation_abc.py' adding 'pymatgen/util/__init__.py' adding 'pymatgen/util/coord.py' adding 'pymatgen/util/coord_cython.cpython-313-x86_64-linux-gnu.so' adding 'pymatgen/util/due.py' adding 'pymatgen/util/graph_hashing.py' adding 'pymatgen/util/io_utils.py' adding 'pymatgen/util/joblib.py' adding 'pymatgen/util/misc.py' adding 'pymatgen/util/num.py' adding 'pymatgen/util/numba.py' adding 'pymatgen/util/plotly_chempot_layouts.json' adding 'pymatgen/util/plotly_interface_rxn_layouts.json' adding 'pymatgen/util/plotly_pd_layouts.json' adding 'pymatgen/util/plotting.py' adding 'pymatgen/util/provenance.py' adding 'pymatgen/util/string.py' adding 'pymatgen/util/testing.py' adding 'pymatgen/util/typing.py' adding 'pymatgen/util/structures/BaNiO3.json' adding 'pymatgen/util/structures/CsCl.json' adding 'pymatgen/util/structures/Graphite.json' adding 'pymatgen/util/structures/He_BCC.json' adding 'pymatgen/util/structures/K2O2.json' adding 'pymatgen/util/structures/La2CoO4F.json' adding 'pymatgen/util/structures/Li10GeP2S12.json' adding 'pymatgen/util/structures/Li2O.json' adding 'pymatgen/util/structures/Li2O2.json' adding 'pymatgen/util/structures/Li3V2(PO4)3.json' adding 'pymatgen/util/structures/LiFePO4.json' adding 'pymatgen/util/structures/NaFePO4.json' adding 'pymatgen/util/structures/Pb2TiZrO6.json' adding 'pymatgen/util/structures/Si.json' adding 'pymatgen/util/structures/SiO2.json' adding 'pymatgen/util/structures/Si_SiO2_Interface.json' adding 'pymatgen/util/structures/Sn.json' adding 'pymatgen/util/structures/SrTiO3.json' adding 'pymatgen/util/structures/TiO2.json' adding 'pymatgen/util/structures/TlBiSe2.json' adding 'pymatgen/util/structures/VO2.json' adding 'pymatgen/vis/ElementColorSchemes.yaml' adding 'pymatgen/vis/__init__.py' adding 'pymatgen/vis/plotters.py' adding 'pymatgen/vis/structure_chemview.py' adding 'pymatgen/vis/structure_vtk.py' adding 'pymatgen-2025.10.7.dist-info/licenses/LICENSE' adding 'pymatgen-2025.10.7.dist-info/METADATA' adding 'pymatgen-2025.10.7.dist-info/WHEEL' adding 'pymatgen-2025.10.7.dist-info/entry_points.txt' adding 'pymatgen-2025.10.7.dist-info/top_level.txt' adding 'pymatgen-2025.10.7.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built pymatgen-2025.10.7-cp313-cp313-linux_x86_64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module debian/rules execute_after_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/pymatgen-2025.10.7+dfsg1' PYTHONPATH=/build/reproducible-path/pymatgen-2025.10.7+dfsg1/.pybuild/cpython3_3.13_pymatgen/build \ sphinx-build docs/apidoc build/html Running Sphinx v8.2.3 loading translations [en]... done making output directory... done WARNING: html_static_path entry 'assets' does not exist WARNING: favicon file 'favicon.ico' does not exist Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 1 source files that are out of date updating environment: [new config] 1 added, 0 changed, 0 removed reading sources... [100%] index The 道 of Pymatgen 1. Great code enables great materials science. 2. Comprehensive tests ensure robustness. 3. Clear documentation leads to more usage. 4. More usage improves code quality (and increases citations). 5. Even complex scientific ideas can be broken down into simple interfaces. 6. Deep (Hulk-level) understanding is often necessary to develop the right interface design. 7. Slow and accurate is better than fast and wrong. 8. But efficiency matters for core classes. 9. Code entropy always increases in a closed system. 10. Constant refactoring is the hallmark of an open platform. --- First Coder /build/reproducible-path/pymatgen-2025.10.7+dfsg1/docs/apidoc/index.rst:9: WARNING: toctree contains reference to nonexisting document 'pymatgen.alchemy' [toc.not_readable] /build/reproducible-path/pymatgen-2025.10.7+dfsg1/docs/apidoc/index.rst:9: WARNING: toctree contains reference to nonexisting document 'pymatgen.analysis' [toc.not_readable] /build/reproducible-path/pymatgen-2025.10.7+dfsg1/docs/apidoc/index.rst:9: WARNING: toctree contains reference to nonexisting document 'pymatgen.apps' [toc.not_readable] /build/reproducible-path/pymatgen-2025.10.7+dfsg1/docs/apidoc/index.rst:9: WARNING: toctree contains reference to nonexisting document 'pymatgen.cli' [toc.not_readable] /build/reproducible-path/pymatgen-2025.10.7+dfsg1/docs/apidoc/index.rst:9: WARNING: toctree contains reference to nonexisting document 'pymatgen.command_line' [toc.not_readable] /build/reproducible-path/pymatgen-2025.10.7+dfsg1/docs/apidoc/index.rst:9: WARNING: toctree contains reference to nonexisting document 'pymatgen.core' [toc.not_readable] /build/reproducible-path/pymatgen-2025.10.7+dfsg1/docs/apidoc/index.rst:9: WARNING: toctree contains reference to nonexisting document 'pymatgen.electronic_structure' [toc.not_readable] /build/reproducible-path/pymatgen-2025.10.7+dfsg1/docs/apidoc/index.rst:9: WARNING: toctree contains reference to nonexisting document 'pymatgen.entries' [toc.not_readable] /build/reproducible-path/pymatgen-2025.10.7+dfsg1/docs/apidoc/index.rst:9: WARNING: toctree contains reference to nonexisting document 'pymatgen.ext' [toc.not_readable] /build/reproducible-path/pymatgen-2025.10.7+dfsg1/docs/apidoc/index.rst:9: WARNING: toctree contains reference to nonexisting document 'pymatgen.io' [toc.not_readable] /build/reproducible-path/pymatgen-2025.10.7+dfsg1/docs/apidoc/index.rst:9: WARNING: toctree contains reference to nonexisting document 'pymatgen.optimization' [toc.not_readable] /build/reproducible-path/pymatgen-2025.10.7+dfsg1/docs/apidoc/index.rst:9: WARNING: toctree contains reference to nonexisting document 'pymatgen.phonon' [toc.not_readable] /build/reproducible-path/pymatgen-2025.10.7+dfsg1/docs/apidoc/index.rst:9: WARNING: toctree contains reference to nonexisting document 'pymatgen.symmetry' [toc.not_readable] /build/reproducible-path/pymatgen-2025.10.7+dfsg1/docs/apidoc/index.rst:9: WARNING: toctree contains reference to nonexisting document 'pymatgen.transformations' [toc.not_readable] /build/reproducible-path/pymatgen-2025.10.7+dfsg1/docs/apidoc/index.rst:9: WARNING: toctree contains reference to nonexisting document 'pymatgen.util' [toc.not_readable] /build/reproducible-path/pymatgen-2025.10.7+dfsg1/docs/apidoc/index.rst:9: WARNING: toctree contains reference to nonexisting document 'pymatgen.vis' [toc.not_readable] looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... WARNING: unsupported theme option 'display_version' given done copying assets... copying static files... Writing evaluated template result to /build/reproducible-path/pymatgen-2025.10.7+dfsg1/build/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/pymatgen-2025.10.7+dfsg1/build/html/_static/basic.css Writing evaluated template result to /build/reproducible-path/pymatgen-2025.10.7+dfsg1/build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/pymatgen-2025.10.7+dfsg1/build/html/_static/js/versions.js copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [100%] index generating indices... genindex py-modindex done writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 19 warnings. The HTML pages are in build/html. make[1]: Leaving directory '/build/reproducible-path/pymatgen-2025.10.7+dfsg1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/pymatgen-2025.10.7+dfsg1' SKIP_TESTS=""; \ list_initialised=0; \ for t in test_matproj TestGenKpt TestHighSymmetryPoint test_from_multi_jobs_file test_from_string test_read_molecule test_read_nbo test_read_negative test_read_plots test_read_write_nbo7 test_all test_custom_smd_write test_sets test_CifWriter test_read_write test_init test_get_site_symmetries BSDOSPlotterTest test_cdft_dc_parsing test_cod test_babel_PC_with_RO_depth_0_vs_depth_10 test_fit; do \ if [ ${list_initialised} = 0 ]; then \ SKIP_TESTS=$t; \ list_initialised=1; \ else \ SKIP_TESTS="${SKIP_TESTS} or $t"; \ fi; \ done; \ if [ "x${SKIP_TESTS}" != "x" ]; then \ SKIP_TESTS="not ( ${SKIP_TESTS} )"; \ fi; \ echo "skipping tests: ${SKIP_TESTS}"; \ for py in `py3versions -sv`; do \ pybuilddir=`pybuild --pyver $py --print build_dir | awk '{print $3}'`; \ testdir=/build/reproducible-path/pymatgen-2025.10.7+dfsg1/.pybuild/test_python$py; \ cp -a $pybuilddir $testdir; \ cp -a tests $testdir; \ PMG_TEST_FILES_DIR=/usr/share/doc/pymatgen-test-files/examples/files \ PYTHONPATH=$testdir PATH=$pybuilddir/../scripts:$PATH \ python$py -m pytest -v --import-mode=prepend --color=no -k "${SKIP_TESTS}" $testdir; \ done skipping tests: not ( test_matproj or TestGenKpt or TestHighSymmetryPoint or test_from_multi_jobs_file or test_from_string or test_read_molecule or test_read_nbo or test_read_negative or test_read_plots or test_read_write_nbo7 or test_all or test_custom_smd_write or test_sets or test_CifWriter or test_read_write or test_init or test_get_site_symmetries or BSDOSPlotterTest or test_cdft_dc_parsing or test_cod or test_babel_PC_with_RO_depth_0_vs_depth_10 or test_fit ) ============================= test session starts ============================== platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/pymatgen-2025.10.7+dfsg1 configfile: pyproject.toml plugins: typeguard-4.4.4 collected 3145 items / 293 deselected / 10 skipped / 2852 selected .pybuild/test_python3.13/tests/alchemy/test_filters.py ....... 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[100%] =============================== warnings summary =============================== .pybuild/test_python3.13/tests/analysis/chemenv/utils/test_func_utils.py::TestFuncUtils::test_csm_infinite_ratio_function /build/reproducible-path/pymatgen-2025.10.7+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/chemenv/utils/math_utils.py:331: RuntimeWarning: divide by zero encountered in scalar divide return np.where(np.isclose(xx, 0.0), aa * float("inf"), aa * np.power(xx - 1.0, 2) / xx) .pybuild/test_python3.13/tests/analysis/chemenv/utils/test_func_utils.py::TestFuncUtils::test_csm_infinite_ratio_function /build/reproducible-path/pymatgen-2025.10.7+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/chemenv/utils/math_utils.py:349: RuntimeWarning: divide by zero encountered in scalar divide aa * np.power(xx - 1.0, 2) / xx**2.0, .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py: 12 warnings /build/reproducible-path/pymatgen-2025.10.7+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/elasticity/elastic.py:482: UserWarning: Tensor is not symmetric, information may be lost in Voigt conversion. .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py::TestElasticTensor::test_from_independent_strains /build/reproducible-path/pymatgen-2025.10.7+dfsg1/.pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py:228: UserWarning: Extra strain states in strain-stress pairs are neglected in independent strain fitting .pybuild/test_python3.13/tests/analysis/test_graphs.py: 18 warnings .pybuild/test_python3.13/tests/command_line/test_critic2_caller.py: 5 warnings /build/reproducible-path/pymatgen-2025.10.7+dfsg1/.pybuild/test_python3.13/pymatgen/command_line/critic2_caller.py:489: DeprecationWarning: Parsing critic2 standard output is deprecated and will not be maintained, please use the native JSON output in the future. .pybuild/test_python3.13/tests/analysis/test_optics.py::test_dielectric_analysis /build/reproducible-path/pymatgen-2025.10.7+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/optics.py:65: RuntimeWarning: divide by zero encountered in divide .pybuild/test_python3.13/tests/analysis/test_optics.py::test_dielectric_analysis /build/reproducible-path/pymatgen-2025.10.7+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/optics.py:72: RuntimeWarning: invalid value encountered in divide .pybuild/test_python3.13/tests/analysis/test_pourbaix_diagram.py: 40 warnings .pybuild/test_python3.13/tests/cli/test_pmg_analyze.py: 41 warnings /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=594216) is multi-threaded, use of fork() may lead to deadlocks in the child. .pybuild/test_python3.13/tests/analysis/test_quasirrho.py::TestQuasiRRHO::test_extreme_temperature_and_pressure /build/reproducible-path/pymatgen-2025.10.7+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/quasirrho.py:243: RuntimeWarning: overflow encountered in exp .pybuild/test_python3.13/tests/analysis/test_quasirrho.py::TestQuasiRRHO::test_extreme_temperature_and_pressure /build/reproducible-path/pymatgen-2025.10.7+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/quasirrho.py:244: RuntimeWarning: overflow encountered in exp .pybuild/test_python3.13/tests/analysis/test_reaction_calculator.py::TestComputedReaction::test_calculated_reaction_energy_uncertainty /build/reproducible-path/pymatgen-2025.10.7+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/reaction_calculator.py:493: FutureWarning: AffineScalarFunc.__lt__() is deprecated. It will be removed in a future release. .pybuild/test_python3.13/tests/analysis/test_surface_analysis.py::TestSurfaceEnergyPlotter::test_monolayer_vs_BE .pybuild/test_python3.13/tests/analysis/test_surface_analysis.py::TestSurfaceEnergyPlotter::test_monolayer_vs_BE .pybuild/test_python3.13/tests/analysis/test_surface_analysis.py::TestSurfaceEnergyPlotter::test_monolayer_vs_BE .pybuild/test_python3.13/tests/analysis/test_surface_analysis.py::TestSurfaceEnergyPlotter::test_monolayer_vs_BE /build/reproducible-path/pymatgen-2025.10.7+dfsg1/.pybuild/test_python3.13/pymatgen/analysis/surface_analysis.py:1046: MatplotlibDeprecationWarning: Passing label as a length 3 sequence when plotting a single dataset is deprecated in Matplotlib 3.9 and will error in 3.11. To keep the current behavior, cast the sequence to string before passing. .pybuild/test_python3.13/tests/analysis/test_transition_state.py::TestNEBAnalysis::test_get_plot /build/reproducible-path/pymatgen-2025.10.7+dfsg1/.pybuild/test_python3.13/pymatgen/util/plotting.py:65: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`). Consider using `matplotlib.pyplot.close()`. .pybuild/test_python3.13/tests/core/test_structure.py::TestStructure::test_rotate_sites /build/reproducible-path/pymatgen-2025.10.7+dfsg1/.pybuild/test_python3.13/pymatgen/core/structure.py:4733: RuntimeWarning: invalid value encountered in divide .pybuild/test_python3.13/tests/electronic_structure/test_dos.py::TestFermiDos::test_doping_fermi /build/reproducible-path/pymatgen-2025.10.7+dfsg1/.pybuild/test_python3.13/pymatgen/electronic_structure/dos.py:532: RuntimeWarning: divide by zero encountered in divide .pybuild/test_python3.13/tests/entries/test_compatibility.py::TestMaterialsProjectCompatibility::test_parallel_process_entries .pybuild/test_python3.13/tests/entries/test_compatibility.py::TestMaterialsProjectCompatibility::test_parallel_process_entries .pybuild/test_python3.13/tests/entries/test_compatibility.py::TestMaterialsProjectCompatibility::test_parallel_process_entries /usr/lib/python3/dist-packages/joblib/externals/loky/backend/fork_exec.py:38: DeprecationWarning: This process (pid=594216) is multi-threaded, use of fork() may lead to deadlocks in the child. .pybuild/test_python3.13/tests/io/lammps/test_data.py::TestLammpsData::test_get_str .pybuild/test_python3.13/tests/io/lammps/test_data.py::TestLammpsData::test_write_file .pybuild/test_python3.13/tests/io/lammps/test_data.py::TestLammpsData::test_write_file .pybuild/test_python3.13/tests/io/lammps/test_data.py::TestCombinedData::test_get_str .pybuild/test_python3.13/tests/io/lammps/test_data.py::TestCombinedData::test_as_lammpsdata /usr/lib/python3/dist-packages/numpy/_core/fromnumeric.py:57: FutureWarning: 'DataFrame.swapaxes' is deprecated and will be removed in a future version. Please use 'DataFrame.transpose' instead. .pybuild/test_python3.13/tests/io/vasp/test_outputs.py::TestWavecar::test_standard /build/reproducible-path/pymatgen-2025.10.7+dfsg1/.pybuild/test_python3.13/pymatgen/io/vasp/outputs.py:5103: RuntimeWarning: invalid value encountered in cast .pybuild/test_python3.13/tests/phonon/test_plotter.py::TestPhononBSPlotter::test_proj_plot /build/reproducible-path/pymatgen-2025.10.7+dfsg1/.pybuild/test_python3.13/pymatgen/phonon/plotter.py:515: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`). Consider using `matplotlib.pyplot.close()`. -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =================================== XPASSES ==================================== ============================= slowest 30 durations ============================= 100.49s call .pybuild/test_python3.13/tests/io/test_babel.py::TestBabelMolAdaptor::test_rotor_search_rrs 52.85s call .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py::TestCubicSupercellTransformation::test_apply_transformation_orthorhombic_supercell 45.98s call .pybuild/test_python3.13/tests/electronic_structure/test_plotter.py::TestBSPlotterProjected::test_methods 25.10s call .pybuild/test_python3.13/tests/symmetry/test_kpath_lm.py::TestKPathLatimerMunro::test_kpath_generation 23.33s call .pybuild/test_python3.13/tests/analysis/test_fragmenter.py::TestFragmentMolecule::test_pc_then_ec_depth_10 18.40s setup .pybuild/test_python3.13/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_tdos 16.44s call .pybuild/test_python3.13/tests/core/test_surface.py::TestSlab::test_symmetrization 15.94s call .pybuild/test_python3.13/tests/io/vasp/test_optics.py::TestVasprun::test_optics 15.85s call .pybuild/test_python3.13/tests/io/test_phonopy.py::TestGruneisen::test_gruneisen_parameter 15.66s setup .pybuild/test_python3.13/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_phdos 15.50s setup .pybuild/test_python3.13/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_gruneisen 15.41s setup .pybuild/test_python3.13/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_multi 15.26s call .pybuild/test_python3.13/tests/analysis/topological/test_spillage.py::TestSolar::test_spillage_from_vasprun 15.25s setup .pybuild/test_python3.13/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_frequencies 15.08s setup .pybuild/test_python3.13/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_acoustic_debye_temp 14.92s setup .pybuild/test_python3.13/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_thermal_conductivity_slack 14.90s setup .pybuild/test_python3.13/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_debye_temp_phonopy 14.76s setup .pybuild/test_python3.13/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_plot 14.75s call .pybuild/test_python3.13/tests/cli/test_pmg_plot.py::test_plot_chgint 14.70s call .pybuild/test_python3.13/tests/core/test_surface.py::TestSlabGenerator::test_non_stoichiometric_symmetrized_slab 14.23s call .pybuild/test_python3.13/tests/core/test_surface.py::TestSlab::test_get_symmetric_sites 13.39s call .pybuild/test_python3.13/tests/analysis/test_transition_state.py::TestNEBAnalysis::test_combine_neb_plots 13.25s call .pybuild/test_python3.13/tests/analysis/test_structure_analyzer.py::TestMiscFunction::test_average_coordination_number 12.71s call .pybuild/test_python3.13/tests/analysis/test_transition_state.py::TestNEBAnalysis::test_run 12.18s call .pybuild/test_python3.13/tests/io/vasp/test_outputs.py::TestVasprun::test_runtype 12.17s setup .pybuild/test_python3.13/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_as_from_dict 12.00s setup .pybuild/test_python3.13/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_average_gruneisen 11.57s call .pybuild/test_python3.13/tests/io/test_packmol.py::TestPackmolSet::test_chdir_behavior 10.72s call .pybuild/test_python3.13/tests/symmetry/test_groups.py::TestSpaceGroup::test_order_symm_ops 10.61s call .pybuild/test_python3.13/tests/analysis/elasticity/test_elastic.py::TestElasticTensorExpansion::test_get_yield_stress =========================== short test summary info ============================ XFAIL .pybuild/test_python3.13/tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py::TestCoordinationGeometryFinder::test_simplest_chemenv_strategy - TODO: need someone to fix this XFAIL .pybuild/test_python3.13/tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py::TestCoordinationGeometryFinder::test_simple_abundance_chemenv_strategy - TODO: need someone to fix this XFAIL .pybuild/test_python3.13/tests/analysis/test_graphs.py::TestStructureGraph::test_str - Need someone to fix this, see issue 4206 XFAIL .pybuild/test_python3.13/tests/analysis/test_molecule_structure_comparator.py::TestMoleculeStructureComparator::test_structural_change_in_geom_opt - TODO: need someone to fix this XFAIL .pybuild/test_python3.13/tests/analysis/test_surface_analysis.py::TestSurfaceEnergyPlotter::test_area_frac_vs_chempot_plot - TODO: need someone to fix this XFAIL .pybuild/test_python3.13/tests/analysis/test_surface_analysis.py::TestSurfaceEnergyPlotter::test_chempot_vs_gamma_clean - TODO: need someone to fix this XFAIL .pybuild/test_python3.13/tests/analysis/test_surface_analysis.py::TestSurfaceEnergyPlotter::test_chempot_vs_gamma_facet - TODO: need someone to fix this XFAIL .pybuild/test_python3.13/tests/analysis/test_surface_analysis.py::TestSurfaceEnergyPlotter::test_surface_chempot_range_map - TODO: need someone to fix this XFAIL .pybuild/test_python3.13/tests/core/test_surface.py::TestReconstructionGenerator::test_previous_reconstructions - This test relies on neighbor orders and is hard coded. Disable temporarily XFAIL .pybuild/test_python3.13/tests/core/test_xcfunc.py::TestLibxcFunc::test_msonable - TODO: XPASS .pybuild/test_python3.13/tests/analysis/test_surface_analysis.py::TestSurfaceEnergyPlotter::test_monolayer_vs_BE - TODO: need someone to fix this XPASS .pybuild/test_python3.13/tests/io/vasp/test_inputs.py::TestPotcar::test_default_functional - TODO: need someone to fix this SKIPPED [1] .pybuild/test_python3.13/tests/command_line/test_gulp_caller.py:38: GULP not available SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap2.py:25: No boltztrap2 SKIPPED [1] .pybuild/test_python3.13/tests/ext/test_cod.py:24: www.crystallography.net is down SKIPPED [1] .pybuild/test_python3.13/tests/ext/test_matproj.py:15: PMG_MAPI_KEY not set SKIPPED [1] .pybuild/test_python3.13/tests/io/test_openff.py:25: could not import 'openff.toolkit': No module named 'openff' SKIPPED [1] .pybuild/test_python3.13/tests/io/test_shengbte.py:10: could not import 'f90nml': No module named 'f90nml' SKIPPED [1] .pybuild/test_python3.13/tests/io/test_zeopp.py:19: neither zeo nor pyzeo is installed SKIPPED [1] .pybuild/test_python3.13/tests/io/vasp/test_help.py:18: Network access not used during debian builds SKIPPED [1] .pybuild/test_python3.13/tests/performance/test_import_time.py:32: ref time only comparable in CI runner SKIPPED [1] .pybuild/test_python3.13/tests/symmetry/test_kpath_hin.py:11: seekpath not installed SKIPPED [1] .pybuild/test_python3.13/tests/analysis/magnetism/test_analyzer.py:263: enumlib not present SKIPPED [1] .pybuild/test_python3.13/tests/analysis/magnetism/test_analyzer.py:299: enumlib not present SKIPPED [1] .pybuild/test_python3.13/tests/analysis/test_graphs.py:350: graphviz executables not present SKIPPED [1] .pybuild/test_python3.13/tests/analysis/test_local_env.py:1367: critic2 executable not present SKIPPED [7] .pybuild/test_python3.13/tests/analysis/test_prototypes.py:345: AFLOW CLI not installed SKIPPED [7] .pybuild/test_python3.13/tests/analysis/test_prototypes.py:355: could not import 'moyopy': No module named 'moyopy' SKIPPED [8] .pybuild/test_python3.13/tests/analysis/test_prototypes.py:361: pyxtal not installed SKIPPED [16] .pybuild/test_python3.13/tests/analysis/test_prototypes.py:378: pyxtal not installed SKIPPED [8] .pybuild/test_python3.13/tests/analysis/test_prototypes.py:392: pyxtal not installed SKIPPED [1] .pybuild/test_python3.13/tests/cli/test_pmg.py:84: vtk is not available SKIPPED [1] .pybuild/test_python3.13/tests/command_line/test_bader_caller.py:65: bader executable not present SKIPPED [1] .pybuild/test_python3.13/tests/command_line/test_bader_caller.py:83: bader executable not present SKIPPED [1] .pybuild/test_python3.13/tests/command_line/test_bader_caller.py:118: bader executable not present SKIPPED [1] .pybuild/test_python3.13/tests/command_line/test_bader_caller.py:135: bader executable not present SKIPPED [1] .pybuild/test_python3.13/tests/command_line/test_critic2_caller.py:25: critic2 executable not present SKIPPED [1] .pybuild/test_python3.13/tests/command_line/test_critic2_caller.py:61: critic2 executable not present SKIPPED [1] .pybuild/test_python3.13/tests/command_line/test_enumlib_caller.py:80: enumlib not present. SKIPPED [1] .pybuild/test_python3.13/tests/command_line/test_enumlib_caller.py:92: enumlib not present. SKIPPED [1] .pybuild/test_python3.13/tests/command_line/test_enumlib_caller.py:122: enumlib not present. SKIPPED [1] .pybuild/test_python3.13/tests/command_line/test_mcsqs_caller.py:28: mcsqs executable not present SKIPPED [1] .pybuild/test_python3.13/tests/command_line/test_mcsqs_caller.py:51: mcsqs executable not present SKIPPED [1] .pybuild/test_python3.13/tests/command_line/test_mcsqs_caller.py:59: mcsqs executable not present SKIPPED [1] .pybuild/test_python3.13/tests/command_line/test_mcsqs_caller.py:67: mcsqs executable not present SKIPPED [1] .pybuild/test_python3.13/tests/command_line/test_mcsqs_caller.py:77: mcsqs executable not present SKIPPED [1] .pybuild/test_python3.13/tests/command_line/test_mcsqs_caller.py:89: mcsqs executable not present SKIPPED [1] .pybuild/test_python3.13/tests/command_line/test_mcsqs_caller.py:101: mcsqs executable not present SKIPPED [1] .pybuild/test_python3.13/tests/command_line/test_vampire_caller.py:34: vampire executable not present SKIPPED [1] .pybuild/test_python3.13/tests/core/test_structure.py:109: enumlib or mcsqs executable not present SKIPPED [1] .pybuild/test_python3.13/tests/core/test_structure.py:717: Only run this in CI tests SKIPPED [1] .pybuild/test_python3.13/tests/core/test_structure.py:1013: could not import 'moyopy': No module named 'moyopy' SKIPPED [1] .pybuild/test_python3.13/tests/core/test_structure.py:1047: could not import 'matcalc': No module named 'matcalc' SKIPPED [1] .pybuild/test_python3.13/tests/core/test_structure.py:1051: PMG_MAPI_KEY environment variable not set or MP API is down. This is also the case in a PR. SKIPPED [1] .pybuild/test_python3.13/tests/core/test_structure.py:2014: could not import 'matgl': No module named 'matgl' SKIPPED [1] .pybuild/test_python3.13/tests/core/test_structure.py:2025: could not import 'matgl': No module named 'matgl' SKIPPED [1] .pybuild/test_python3.13/tests/core/test_structure.py:2038: could not import 'matgl': No module named 'matgl' SKIPPED [1] .pybuild/test_python3.13/tests/core/test_structure.py:2046: could not import 'matgl': No module named 'matgl' SKIPPED [1] .pybuild/test_python3.13/tests/core/test_structure.py:2681: could not import 'tblite': No module named 'tblite' SKIPPED [1] .pybuild/test_python3.13/tests/core/test_structure.py:2691: could not import 'tblite': No module named 'tblite' SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:40: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:83: No FDINT SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:98: No FDINT SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:113: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:120: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:129: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:138: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:154: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:166: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:196: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:200: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:204: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:218: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:229: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:238: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_boltztrap.py:251: No x_trans. SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_plotter.py:310: No x_trans executable found SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_plotter.py:317: No x_trans executable found SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_plotter.py:325: No x_trans executable found SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_plotter.py:332: No x_trans executable found SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_plotter.py:339: No x_trans executable found SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_plotter.py:346: No x_trans executable found SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_plotter.py:353: No x_trans executable found SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_plotter.py:360: No x_trans executable found SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_plotter.py:367: No x_trans executable found SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_plotter.py:374: No x_trans executable found SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_plotter.py:381: No x_trans executable found SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_plotter.py:388: No x_trans executable found SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_plotter.py:395: No x_trans executable found SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_plotter.py:402: No x_trans executable found SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_plotter.py:410: No x_trans executable found SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_plotter.py:417: No x_trans executable found SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_plotter.py:424: No x_trans executable found SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_plotter.py:431: No x_trans executable found SKIPPED [1] .pybuild/test_python3.13/tests/electronic_structure/test_plotter.py:438: No x_trans executable found SKIPPED [1] .pybuild/test_python3.13/tests/ext/test_optimade.py:40: MP OPTIMADE is down. SKIPPED [1] .pybuild/test_python3.13/tests/ext/test_optimade.py:58: MP OPTIMADE is down. SKIPPED [1] .pybuild/test_python3.13/tests/ext/test_optimade.py:81: At least one MC OPTIMADE API is down. SKIPPED [1] .pybuild/test_python3.13/tests/ext/test_optimade.py:93: OPTIMADE providers list is down. SKIPPED [1] ../../../usr/lib/python3/dist-packages/_pytest/unittest.py:385: inconsistent data SKIPPED [1] .pybuild/test_python3.13/tests/io/test_cif.py:314: non-free PF*.cif test files are not available SKIPPED [1] .pybuild/test_python3.13/tests/io/test_jarvis.py:12: JARVIS-tools not loaded. SKIPPED [1] .pybuild/test_python3.13/tests/io/test_jarvis.py:20: JARVIS-tools not loaded. SKIPPED [1] .pybuild/test_python3.13/tests/symmetry/test_kpaths.py:21: No seek path present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:97: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:158: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:188: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:207: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:237: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:249: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:304: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:334: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:342: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:352: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:364: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:492: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:540: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:549: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:607: mcsqs not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:617: mcsqs not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:638: mcsqs not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:656: icet not installed. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:670: icet not installed. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:681: icet not installed. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_advanced_transformations.py:874: hiphive not present SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_site_transformations.py:215: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_standard_transformations.py:239: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_standard_transformations.py:256: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_standard_transformations.py:274: enum_lib not present. SKIPPED [1] .pybuild/test_python3.13/tests/transformations/test_standard_transformations.py:280: enum_lib not present. = 2691 passed, 159 skipped, 293 deselected, 10 xfailed, 2 xpassed, 141 warnings in 1419.98s (0:23:39) = ..tot conformations = 3 ..tot confs tested = 3 ..below energy threshold = 3 make[1]: Leaving directory '/build/reproducible-path/pymatgen-2025.10.7+dfsg1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir dh_installdocs -O--buildsystem=pybuild dh_installdocs: warning: Cannot auto-detect main package for python-pymatgen-doc. If the default is wrong, please use --doc-main-package or the X-Doc-Main-Package field dh_sphinxdoc -i -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/python3-pymatgen/usr/bin/get_environment I: dh_python3 tools:114: replacing shebang in debian/python3-pymatgen/usr/bin/feff_plot_dos I: dh_python3 tools:114: replacing shebang in debian/python3-pymatgen/usr/bin/feff_plot_cross_section I: dh_python3 tools:114: replacing shebang in debian/python3-pymatgen/usr/bin/pmg I: dh_python3 pydist:339: Ignoring complex environment marker: matcalc>=0.4.0; python_version < "3.13" and extra == "matcalc" I: dh_python3 pydist:339: Ignoring complex environment marker: matgl>=1.2.7; python_version < "3.13" and extra == "matcalc" I: dh_python3 pydist:339: Ignoring complex environment marker: matgl>=1.2.7; python_version < "3.13" and extra == "mlp" I: dh_python3 pydist:339: Ignoring complex environment marker: tblite[ase]>=0.3.0; (platform_system == "Linux" and python_version < "3.12") and extra == "tblite" I: dh_python3 pydist:339: Ignoring complex environment marker: pyzeo; platform_system != "Windows" and extra == "zeopp" debian/rules execute_after_dh_python3 make[1]: Entering directory '/build/reproducible-path/pymatgen-2025.10.7+dfsg1' dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/pymatgen-2025.10.7+dfsg1' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-pymatgen-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pymatgen-dbgsym' in '../python3-pymatgen-dbgsym_2025.10.7+dfsg1-1_amd64.deb'. dpkg-deb: building package 'python3-pymatgen' in '../python3-pymatgen_2025.10.7+dfsg1-1_amd64.deb'. dpkg-deb: building package 'python-pymatgen-doc' in '../python-pymatgen-doc_2025.10.7+dfsg1-1_all.deb'. dpkg-genbuildinfo --build=binary -O../pymatgen_2025.10.7+dfsg1-1_amd64.buildinfo dpkg-genchanges --build=binary -O../pymatgen_2025.10.7+dfsg1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from pymatgen-2025.10.7+dfsg1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/530293 and its subdirectories I: Current time: Thu Nov 20 21:38:41 -12 2025 I: pbuilder-time-stamp: 1763717921 Fri Nov 21 09:38:41 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Fri Nov 21 09:38:41 UTC 2025 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Fri Nov 21 09:55:04 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Fri Nov 21 09:55:04 UTC 2025 I: pymatgen_2025.10.7+dfsg1-1_amd64.changes: Format: 1.8 Date: Mon, 13 Oct 2025 01:29:18 +0200 Source: pymatgen Binary: python-pymatgen-doc python3-pymatgen python3-pymatgen-dbgsym Architecture: all amd64 Version: 2025.10.7+dfsg1-1 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Drew Parsons Description: python-pymatgen-doc - Python Materials Genomics for materials analysis (documentation) python3-pymatgen - Python Materials Genomics for materials analysis Closes: 1114711 Changes: pymatgen (2025.10.7+dfsg1-1) unstable; urgency=medium . * New upstream release - works with NumPy 2.3. Closes: #1114711 - applies debian patches CVE-2022-42964_ReDOS_vulnerability.patch and fix-build-with-new-uncertainties.patch - Build-Depends: python3-bibtexparser instead of python3-pybtex - Build-Depends: pymatgen-test-files (>= 2025.10.7~) - Build-Depends: python3-orjson * drop Build-Depends: python3-vtk9 | python3-paraview (crashes with vtk9 9.3.0). Keep Recommends for run-time. * debian patch test_no_moyopy.patch skips tests using moyopy (in analysis/test_prototypes.py), which is not (yet) packaged * drop debian/tests/test-pymatgen-net, since network tests (ext/test_cod.py) have been disabled upstream * Standards-Version: 4.7.2 Checksums-Sha1: 2767f0b311eb3d3221a7489f0e1647c86d897fd6 13297 pymatgen_2025.10.7+dfsg1-1_amd64.buildinfo 20046d35dc028c5fed25d22a0c6012dcdcc8eecb 96744 python-pymatgen-doc_2025.10.7+dfsg1-1_all.deb 8714a24488543cfdbbe71e137f76cb2608beb37c 882352 python3-pymatgen-dbgsym_2025.10.7+dfsg1-1_amd64.deb 78e3077959dd79d9313607ad84ae01b9471cb162 2604552 python3-pymatgen_2025.10.7+dfsg1-1_amd64.deb Checksums-Sha256: 884075c87ebcf91054c1b8007db9e00c4d17396f348af466cdbc496af0794743 13297 pymatgen_2025.10.7+dfsg1-1_amd64.buildinfo 597c15b13cf1250f27400df9afb3f3b22e7d53bf73a787250e7f924674124c95 96744 python-pymatgen-doc_2025.10.7+dfsg1-1_all.deb b2f4fe18a014145834e69a93d9a68e837193c6250034b5bcc96722c754780ee5 882352 python3-pymatgen-dbgsym_2025.10.7+dfsg1-1_amd64.deb c75ecbec6a0a583138a271006bc9aedab2ad2b3401bd6b03946e15e279ac978a 2604552 python3-pymatgen_2025.10.7+dfsg1-1_amd64.deb Files: 6b87ffe47e9427ea91c2c7a82e5c7607 13297 python optional pymatgen_2025.10.7+dfsg1-1_amd64.buildinfo 37a81e7f0f913d952730c02ab32b0704 96744 doc optional python-pymatgen-doc_2025.10.7+dfsg1-1_all.deb 244854b3ec3434283a0d7c8d8e7be072 882352 debug optional python3-pymatgen-dbgsym_2025.10.7+dfsg1-1_amd64.deb b54a856721a2cb646eab32aa974bdb86 2604552 python optional python3-pymatgen_2025.10.7+dfsg1-1_amd64.deb Fri Nov 21 09:55:05 UTC 2025 I: diffoscope 309 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_19-76470.service; invocation ID: 0b9299c9f19a41c2a0861c93b8f4693b # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ZwrLAcsh/pymatgen_2025.10.7+dfsg1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ZwrLAcsh/pymatgen_2025.10.7+dfsg1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ZwrLAcsh/pymatgen_2025.10.7+dfsg1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ZwrLAcsh/b1/pymatgen_2025.10.7+dfsg1-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ZwrLAcsh/b2/pymatgen_2025.10.7+dfsg1-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 217ms CPU time consumed: 173ms Memory peak: 17M (swap: 0B) Fri Nov 21 09:55:07 UTC 2025 I: diffoscope 309 found no differences in the changes files, and a .buildinfo file also exists. Fri Nov 21 09:55:07 UTC 2025 I: pymatgen from unstable built successfully and reproducibly on amd64. Fri Nov 21 09:55:08 UTC 2025 I: Removing signed pymatgen_2025.10.7+dfsg1-1_amd64.buildinfo.asc files: removed './b1/pymatgen_2025.10.7+dfsg1-1_amd64.buildinfo.asc' removed './b2/pymatgen_2025.10.7+dfsg1-1_amd64.buildinfo.asc'