Mon Jan 27 09:46:21 UTC 2025 I: starting to build pycifrw/unstable/amd64 on jenkins on '2025-01-27 09:46' Mon Jan 27 09:46:21 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_26/30552/console.log Mon Jan 27 09:46:21 UTC 2025 I: Downloading source for unstable/pycifrw=4.4.6-4 --2025-01-27 09:46:21-- http://deb.debian.org/debian/pool/main/p/pycifrw/pycifrw_4.4.6-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2181 (2.1K) [text/prs.lines.tag] Saving to: ‘pycifrw_4.4.6-4.dsc’ 0K .. 100% 356M=0s 2025-01-27 09:46:21 (356 MB/s) - ‘pycifrw_4.4.6-4.dsc’ saved [2181/2181] Mon Jan 27 09:46:21 UTC 2025 I: pycifrw_4.4.6-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pycifrw Binary: python3-pycifrw Architecture: any Version: 4.4.6-4 Maintainer: Debian Python Team Uploaders: Andrius Merkys , Homepage: https://github.com/jamesrhester/pycifrw Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/python-team/packages/pycifrw Vcs-Git: https://salsa.debian.org/python-team/packages/pycifrw.git Testsuite: autopkgtest, autopkgtest-pkg-pybuild Build-Depends: debhelper-compat (= 13), dh-sequence-python3, noweb, python3-all, python3-all-dev, python3-legacy-cgi, python3-numpy , python3-ply , python3-pytest , python3-setuptools Package-List: python3-pycifrw deb python optional arch=any Checksums-Sha1: 79b8a39267dd2f33ff696960949200320695f7fd 2856166 pycifrw_4.4.6.orig.tar.gz 8260699e78e19abd982c7b7e6dfe368bdd1e66b3 16748 pycifrw_4.4.6-4.debian.tar.xz Checksums-Sha256: 96895f3efc49c1383990f5170b422af3ddc2ac4ab153ed709b85acdc08b241ab 2856166 pycifrw_4.4.6.orig.tar.gz f16165ca976ff302634425b252bdc9d081fcce16b5a0d660b9cf01c348a25189 16748 pycifrw_4.4.6-4.debian.tar.xz Files: ff764a75def3f91bfec5bf229747f792 2856166 pycifrw_4.4.6.orig.tar.gz 6f006839551086b146200d0b83e33116 16748 pycifrw_4.4.6-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmc2eSERHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBrajxAAlGvWoDtUExNctO1q1FGrSHLYJ6ZRrJ17 SGn/LBrTsd76DqrNcBUKbYeP6QKP6k2HL74EsjmhWqnwPpCppnn634cHVIvRpTN/ gPr8vjOi3rUgqtFrZ5sZxZoweR7e6/wg0nco3swdpbOtkUXFJCMmsZqZtCuvOUWc VbuRXFirFmBUl54TWo+dabHk4trzyD190ZL3FYTLZt45sDqCPJbmh9ESbhfA0G/t VUx3z6+j/Oedd9+iafkhII5OTqrz2i1c4jYXVMpTUl+TwREzmGcSdNtdl+QzINW4 pNRLPKGJ8SqcUH9a75QYzRmu3foYMyutZF63YHwJUWFu2QgOSYqw8BFJWWNMDeTF pKBNCHIqyW7kthwfN2UNl+csQjkSIDcJ4H7YSQbXAexN+Vg27z/I3vQDcOqAqHh5 TZxMomkCFzht3uWiI2dN2PVZ4wae78lkIR+XKrbrWxqF8TcAPpjMmQ9xcRbOo+Cv RplVvFLxtsrVYSZUq6qr6i9GwHZSoyk5Wzz1JfplHJds2Gl7eje8DaYLjIvnK6/G 0+yOiwwU0KER7SNHZpzBS1fLVA8BGfGGUk73+hHNCNyipsShSEGJCK4eW3kJHizB ktOmZ6AmetbrPEcOaeGncG+YYOAKOzItIQPtafSt3pN7wnsevACGURj/gC8KhuzK wzPkypSqi5o= =Tb2h -----END PGP SIGNATURE----- Mon Jan 27 09:46:21 UTC 2025 I: Checking whether the package is not for us Mon Jan 27 09:46:21 UTC 2025 I: Starting 1st build on remote node ionos5-amd64.debian.net. Mon Jan 27 09:46:21 UTC 2025 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Mon Jan 27 09:52:29 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Mar 1 04:09:23 -12 2026 I: pbuilder-time-stamp: 1772381363 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pycifrw_4.4.6-4.dsc] I: copying [./pycifrw_4.4.6.orig.tar.gz] I: copying [./pycifrw_4.4.6-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./pycifrw_4.4.6-4.dsc: unsupported subcommand dpkg-source: info: extracting pycifrw in pycifrw-4.4.6 dpkg-source: info: unpacking pycifrw_4.4.6.orig.tar.gz dpkg-source: info: unpacking pycifrw_4.4.6-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 6.patch dpkg-source: info: applying 11.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2508069/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='282238aca93940ccb3b1aa0ecb34ca26' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2508069' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.B231Su9A/pbuilderrc_cFd8 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.B231Su9A/b1 --logfile b1/build.log pycifrw_4.4.6-4.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2508069/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, noweb, python3-all, python3-all-dev, python3-legacy-cgi, python3-numpy, python3-ply, python3-pytest, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19832 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on noweb; however: Package noweb is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-legacy-cgi; however: Package python3-legacy-cgi is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-ply; however: Package python3-ply is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gawk{a} gettext{a} gettext-base{a} groff-base{a} iconx{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libproc2-0{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libsigsegv2{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libxpm4{a} m4{a} man-db{a} media-types{a} netbase{a} noweb{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-legacy-cgi{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-ply{a} python3-pytest{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tex-common{a} tzdata{a} ucf{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl linux-sysctl-defaults lynx psmisc python3-pygments texlive wget 0 packages upgraded, 111 newly installed, 0 to remove and 0 not upgraded. Need to get 64.3 MB of archives. After unpacking 277 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libsigsegv2 amd64 2.14-1+b2 [34.4 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 gawk amd64 1:5.2.1-2+b1 [674 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.1-3 [858 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.1-3 [2202 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025a-1 [259 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.1-3 [1973 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.1-3 [740 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B] Get: 16 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.1-2 [28.0 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.8-5 [817 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.8-5 [2164 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-1 [92.2 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get: 32 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 33 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0048 [42.0 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-2 [539 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 45 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.6.0-1 [720 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250108 [113 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b3 [56.2 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 iconx amd64 9.5.24a-2 [161 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-14 [837 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 80 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.1.3-4 [30.4 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.1-3 [2151 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.1-3 [5013 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.1-2 [10.2 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.8-5 [1971 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libpython3.12t64 amd64 3.12.8-5 [2150 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libpython3.12-dev amd64 3.12.8-5 [5136 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.13.1-2 [1072 B] Get: 97 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.18 [32.5 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 noweb amd64 2.13-1 [643 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.8-5 [677 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.1-2 [1056 B] Get: 101 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.1-3 [507 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.1-2 [26.1 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3.12-dev amd64 3.12.8-5 [505 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.13.1-2 [1076 B] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-legacy-cgi all 2.6.1-2 [16.1 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:1.26.4+ds-13 [4736 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 python3-ply all 3.11-7 [62.6 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.4-1 [250 kB] Fetched 64.3 MB in 4s (16.2 MB/s) Preconfiguring packages ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../libsigsegv2_2.14-1+b2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.14-1+b2) ... Setting up readline-common (8.2-6) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up libsigsegv2:amd64 (2.14-1+b2) ... Selecting previously unselected package gawk. (Reading database ... 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Current default time zone: 'Etc/UTC' Local time is now: Sun Mar 1 16:10:21 UTC 2026. Universal Time is now: Sun Mar 1 16:10:21 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.6.4-1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libproc2-0:amd64 (2:4.0.4-7) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up libk5crypto3:amd64 (1.21.3-4) ... Setting up libgfortran5:amd64 (14.2.0-14) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... 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Setting up libxpm4:amd64 (1:3.5.17-1+b3) ... Setting up libtool (2.5.4-2) ... Setting up python3.13 (3.13.1-3) ... Setting up python3 (3.13.1-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up python3-packaging (24.2-1) ... Setting up libpython3.13-dev:amd64 (3.13.1-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up ucf (3.0048) ... Setting up python3-numpy (1:1.26.4+ds-13) ... Setting up libjs-sphinxdoc (8.1.3-4) ... Setting up python3-pluggy (1.5.0-1) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up python3-legacy-cgi (2.6.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up iconx (9.5.24a-2) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up libpython3-dev:amd64 (3.13.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up python3.13-dev (3.13.1-3) ... Setting up python3-pytest (8.3.4-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3-ply (3.11-7) ... Setting up python3-typeguard (4.4.1-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.1-2) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up noweb (2.13-1) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up libpython3.12-stdlib:amd64 (3.12.8-5) ... Setting up python3-setuptools (75.6.0-1) ... Setting up python3.12 (3.12.8-5) ... Setting up python3-all (3.13.1-2) ... Setting up debhelper (13.24.1) ... Setting up libpython3.12t64:amd64 (3.12.8-5) ... Setting up dh-python (6.20250108) ... Setting up libpython3.12-dev:amd64 (3.12.8-5) ... Setting up libpython3-all-dev:amd64 (3.13.1-2) ... Setting up python3.12-dev (3.12.8-5) ... Setting up python3-all-dev (3.13.1-2) ... Processing triggers for libc-bin (2.40-6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pycifrw-4.4.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pycifrw_4.4.6-4_source.changes dpkg-buildpackage: info: source package pycifrw dpkg-buildpackage: info: source version 4.4.6-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from pycifrw-4.4.6/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config debian/rules execute_before_dh_auto_build make[1]: Entering directory '/build/reproducible-path/pycifrw-4.4.6' /usr/bin/make drel lib sources PYTHON=python3 make[2]: Entering directory '/build/reproducible-path/pycifrw-4.4.6' /usr/bin/make -C src/drel make[3]: Entering directory '/build/reproducible-path/pycifrw-4.4.6/src/drel' notangle py_from_ast.nw > py_from_ast.py notangle drel_runtime.nw > drel_runtime.py make[3]: Leaving directory '/build/reproducible-path/pycifrw-4.4.6/src/drel' /usr/bin/make -C src/lib make[3]: Entering directory '/build/reproducible-path/pycifrw-4.4.6/src/lib' make[3]: 'lex.yy.c' is up to date. make[3]: Leaving directory '/build/reproducible-path/pycifrw-4.4.6/src/lib' /usr/bin/make -C src make[3]: Entering directory '/build/reproducible-path/pycifrw-4.4.6/src' notangle CifFile_module.nw > CifFile_module.py notangle StarFile.nw > StarFile.py notangle -RSTAR2_syntax YappsStarParser.nw > YappsStarParser_STAR2.g PYTHONPATH=. python3 ./yapps3/yapps2.py YappsStarParser_STAR2.g :1: SyntaxWarning: invalid escape sequence '\(' :1: SyntaxWarning: invalid escape sequence '\(' :1: SyntaxWarning: invalid escape sequence '\(' :1: SyntaxWarning: invalid escape sequence '\}' :1: SyntaxWarning: invalid escape sequence '\{' :1: SyntaxWarning: invalid escape sequence '\]' :1: SyntaxWarning: invalid escape sequence '\[' :1: SyntaxWarning: invalid escape sequence '\[' :1: SyntaxWarning: invalid escape sequence '\s' notangle -R1.1_syntax YappsStarParser.nw > YappsStarParser_1_1.g PYTHONPATH=. python3 ./yapps3/yapps2.py YappsStarParser_1_1.g :1: SyntaxWarning: invalid escape sequence '\(' :1: SyntaxWarning: invalid escape sequence '\(' :1: SyntaxWarning: invalid escape sequence '\(' :1: SyntaxWarning: invalid escape sequence '\s' notangle -R1.0_syntax YappsStarParser.nw > YappsStarParser_1_0.g PYTHONPATH=. python3 ./yapps3/yapps2.py YappsStarParser_1_0.g :1: SyntaxWarning: invalid escape sequence '\(' :1: SyntaxWarning: invalid escape sequence '\(' :1: SyntaxWarning: invalid escape sequence '\(' :1: SyntaxWarning: invalid escape sequence '\s' notangle -RTypeContents_syntax TypeContentsParser.nw > TypeContentsParser.g PYTHONPATH=. python3 ./yapps3/yapps2.py TypeContentsParser.g :1: SyntaxWarning: invalid escape sequence '\(' :1: SyntaxWarning: invalid escape sequence '\)' :1: SyntaxWarning: invalid escape sequence '\(' :1: SyntaxWarning: invalid escape sequence '\,' notangle -RCIF2_syntax YappsStarParser.nw > YappsStarParser_2_0.g PYTHONPATH=. python3 ./yapps3/yapps2.py YappsStarParser_2_0.g :1: SyntaxWarning: invalid escape sequence '\(' :1: SyntaxWarning: invalid escape sequence '\(' :1: SyntaxWarning: invalid escape sequence '\(' :1: SyntaxWarning: invalid escape sequence '\}' :1: SyntaxWarning: invalid escape sequence '\{' :1: SyntaxWarning: invalid escape sequence '\]' :1: SyntaxWarning: invalid escape sequence '\[' :1: SyntaxWarning: invalid escape sequence '\[' :1: SyntaxWarning: invalid escape sequence '\s' noweave -html -index -filter l2h CifFile_module.nw > CifFile.html noweave -html -index -filter l2h StarFile.nw > StarFile.html noweave -html -index -filter l2h YappsStarParser.nw > YappsStarParser.html noweave -html -index -filter l2h TypeContentsParser.nw > TypeContentsParser.html make[3]: Leaving directory '/build/reproducible-path/pycifrw-4.4.6/src' make[2]: Leaving directory '/build/reproducible-path/pycifrw-4.4.6' make[1]: Leaving directory '/build/reproducible-path/pycifrw-4.4.6' dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/__init__.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/CifFile_module.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/yapps3_compiled_rt.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/YappsStarParser_1_1.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/YappsStarParser_1_0.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/YappsStarParser_STAR2.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/YappsStarParser_2_0.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/StarFile.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/TypeContentsParser.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/TypeContentsParser.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/YappsStarParser_1_1.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/CifFile_module.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/YappsStarParser_1_0.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/StarFile.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/YappsStarParser_STAR2.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/YappsStarParser_2_0.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile creating /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/drel copying src/drel/py_from_ast.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/drel copying src/drel/__init__.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/drel copying src/drel/drel_runtime.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/drel copying src/drel/drel_ast_yacc.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/drel copying src/drel/drel_lex.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/drel running build_ext building 'CifFile.StarScan' extension creating build/temp.linux-x86_64-cpython-312/src/lib x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pycifrw-4.4.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c src/lib/lex.yy.c -o build/temp.linux-x86_64-cpython-312/src/lib/lex.yy.o star.l: In function 'star_scanner': star.l:111:26: warning: suggest parentheses around assignment used as truth value [-Wparentheses] lex.yy.c:195:36: warning: comparison of integer expressions of different signedness: 'int' and 'yy_size_t' {aka 'long unsigned int'} [-Wsign-compare] lex.yy.c:213:9: note: in expansion of macro 'YY_LESS_LINENO' star.l:117:24: note: in expansion of macro 'yyless' star.l:136:26: warning: suggest parentheses around assignment used as truth value [-Wparentheses] lex.yy.c:195:36: warning: comparison of integer expressions of different signedness: 'int' and 'yy_size_t' {aka 'long unsigned int'} [-Wsign-compare] lex.yy.c:213:9: note: in expansion of macro 'YY_LESS_LINENO' star.l:142:24: note: in expansion of macro 'yyless' lex.yy.c: At top level: lex.yy.c:1394:16: warning: 'input' defined but not used [-Wunused-function] lex.yy.c:1349:17: warning: 'yyunput' defined but not used [-Wunused-function] x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pycifrw-4.4.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c src/lib/py_star_scan.c -o build/temp.linux-x86_64-cpython-312/src/lib/py_star_scan.o src/lib/py_star_scan.c: In function 'get_input': src/lib/py_star_scan.c:69:15: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 69 | input_string = PyUnicode_AsUTF8(str_arg); | ^ src/lib/py_star_scan.c:76:10: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 76 | for(i=0;i /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/CifFile_module.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/yapps3_compiled_rt.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/YappsStarParser_1_1.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/YappsStarParser_1_0.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/YappsStarParser_STAR2.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/YappsStarParser_2_0.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/StarFile.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/TypeContentsParser.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/TypeContentsParser.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/YappsStarParser_1_1.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/CifFile_module.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/YappsStarParser_1_0.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/StarFile.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/YappsStarParser_STAR2.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/YappsStarParser_2_0.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile creating /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/drel copying src/drel/py_from_ast.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/drel copying src/drel/__init__.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/drel copying src/drel/drel_runtime.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/drel copying src/drel/drel_ast_yacc.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/drel copying src/drel/drel_lex.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/drel running build_ext building 'CifFile.StarScan' extension creating build/temp.linux-x86_64-cpython-313/src/lib x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pycifrw-4.4.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/lib/lex.yy.c -o build/temp.linux-x86_64-cpython-313/src/lib/lex.yy.o star.l: In function 'star_scanner': star.l:111:26: warning: suggest parentheses around assignment used as truth value [-Wparentheses] lex.yy.c:195:36: warning: comparison of integer expressions of different signedness: 'int' and 'yy_size_t' {aka 'long unsigned int'} [-Wsign-compare] lex.yy.c:213:9: note: in expansion of macro 'YY_LESS_LINENO' star.l:117:24: note: in expansion of macro 'yyless' star.l:136:26: warning: suggest parentheses around assignment used as truth value [-Wparentheses] lex.yy.c:195:36: warning: comparison of integer expressions of different signedness: 'int' and 'yy_size_t' {aka 'long unsigned int'} [-Wsign-compare] lex.yy.c:213:9: note: in expansion of macro 'YY_LESS_LINENO' star.l:142:24: note: in expansion of macro 'yyless' lex.yy.c: At top level: lex.yy.c:1394:16: warning: 'input' defined but not used [-Wunused-function] lex.yy.c:1349:17: warning: 'yyunput' defined but not used [-Wunused-function] x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pycifrw-4.4.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/lib/py_star_scan.c -o build/temp.linux-x86_64-cpython-313/src/lib/py_star_scan.o src/lib/py_star_scan.c: In function 'get_input': src/lib/py_star_scan.c:69:15: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 69 | input_string = PyUnicode_AsUTF8(str_arg); | ^ src/lib/py_star_scan.c:76:10: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 76 | for(i=0;i:8: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. .pybuild/cpython3_3.12_pycifrw/build/TestPyCIFRW.py: 10196 warnings /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/drel/drel_runtime.py:74: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. return numpy.matrix(input_arg),True .pybuild/cpython3_3.12_pycifrw/build/TestPyCIFRW.py: 4975 warnings /usr/lib/python3/dist-packages/numpy/matrixlib/defmatrix.py:70: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. return matrix(data, dtype=dtype, copy=False) .pybuild/cpython3_3.12_pycifrw/build/TestPyCIFRW.py: 20 warnings :3: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ==== 179 passed, 1 skipped, 2 xfailed, 15209 warnings in 107.59s (0:01:47) ===== I: pybuild base:311: cd /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build; python3.13 -m pytest -v TestPyCIFRW.py ============================= test session starts ============================== platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.13 cachedir: .pytest_cache rootdir: /build/reproducible-path/pycifrw-4.4.6 plugins: typeguard-4.4.1 collecting ... collected 182 items TestPyCIFRW.py::BasicUtilitiesTestCase::testAddIndent PASSED [ 0%] TestPyCIFRW.py::BasicUtilitiesTestCase::testCorrectEnding PASSED [ 1%] TestPyCIFRW.py::BasicUtilitiesTestCase::testFinalBackslash PASSED [ 1%] TestPyCIFRW.py::BasicUtilitiesTestCase::testFoldingRemoval PASSED [ 2%] TestPyCIFRW.py::BasicUtilitiesTestCase::testManyLineEndings PASSED [ 2%] TestPyCIFRW.py::BasicUtilitiesTestCase::testOptionalBreak PASSED [ 3%] TestPyCIFRW.py::BasicUtilitiesTestCase::testPlainLineFolding PASSED [ 3%] TestPyCIFRW.py::BasicUtilitiesTestCase::testPreWrappedFolding PASSED [ 4%] TestPyCIFRW.py::BasicUtilitiesTestCase::testPrefixAndFold PASSED [ 4%] TestPyCIFRW.py::BasicUtilitiesTestCase::testRemoveIndent PASSED [ 5%] TestPyCIFRW.py::BasicUtilitiesTestCase::testReverseIndent PASSED [ 6%] TestPyCIFRW.py::BasicUtilitiesTestCase::testStarList PASSED [ 6%] TestPyCIFRW.py::BasicUtilitiesTestCase::testStringiness PASSED [ 7%] TestPyCIFRW.py::BasicUtilitiesTestCase::testTrailingBackslash PASSED [ 7%] TestPyCIFRW.py::BasicUtilitiesTestCase::testTrickyFoldingRemoval PASSED [ 8%] TestPyCIFRW.py::BlockRWTestCase::testBadNameSet PASSED [ 8%] TestPyCIFRW.py::BlockRWTestCase::testBadStringSet PASSED [ 9%] TestPyCIFRW.py::BlockRWTestCase::testEmptyString PASSED [ 9%] TestPyCIFRW.py::BlockRWTestCase::testMoreBadStrings PASSED [ 10%] TestPyCIFRW.py::BlockRWTestCase::testStringSet PASSED [ 10%] TestPyCIFRW.py::BlockRWTestCase::testTooLongLoopSet PASSED [ 11%] TestPyCIFRW.py::BlockRWTestCase::testTooLongSet PASSED [ 12%] TestPyCIFRW.py::BlockRWTestCase::testTupleComplexSet PASSED [ 12%] TestPyCIFRW.py::BlockRWTestCase::testTupleNumberSet PASSED [ 13%] TestPyCIFRW.py::BlockChangeTestCase::testAddToLoop PASSED [ 13%] TestPyCIFRW.py::BlockChangeTestCase::testBadAddToLoop PASSED [ 14%] TestPyCIFRW.py::BlockChangeTestCase::testChangeLoop PASSED [ 14%] TestPyCIFRW.py::BlockChangeTestCase::testDataNameCase PASSED [ 15%] TestPyCIFRW.py::BlockChangeTestCase::testFromBlockSet PASSED [ 15%] TestPyCIFRW.py::BlockChangeTestCase::testFullLoopRemove PASSED [ 16%] TestPyCIFRW.py::BlockChangeTestCase::testGetOperation PASSED [ 17%] TestPyCIFRW.py::BlockChangeTestCase::testLoopRemove PASSED [ 17%] TestPyCIFRW.py::BlockChangeTestCase::testSimpleRemove PASSED [ 18%] TestPyCIFRW.py::SyntaxErrorTestCase::testTripleApostropheCase PASSED [ 18%] TestPyCIFRW.py::SyntaxErrorTestCase::testTripleQuoteCase PASSED [ 19%] TestPyCIFRW.py::LoopBlockTestCase::testAddLoopCaseReplaceColumn PASSED [ 19%] TestPyCIFRW.py::LoopBlockTestCase::testAddLoopLCaseReplaceColumn PASSED [ 20%] TestPyCIFRW.py::LoopBlockTestCase::testAddPacket PASSED [ 20%] TestPyCIFRW.py::LoopBlockTestCase::testChangeOrder PASSED [ 21%] TestPyCIFRW.py::LoopBlockTestCase::testCompoundKeyPacket PASSED [ 21%] TestPyCIFRW.py::LoopBlockTestCase::testGetLoopCase PASSED [ 22%] TestPyCIFRW.py::LoopBlockTestCase::testGetOrder PASSED [ 23%] TestPyCIFRW.py::LoopBlockTestCase::testIteration PASSED [ 23%] TestPyCIFRW.py::LoopBlockTestCase::testKeyPacket PASSED [ 24%] TestPyCIFRW.py::LoopBlockTestCase::testLoop PASSED [ 24%] TestPyCIFRW.py::LoopBlockTestCase::testLoopCharCase PASSED [ 25%] TestPyCIFRW.py::LoopBlockTestCase::testLoopOutputOrder PASSED [ 25%] TestPyCIFRW.py::LoopBlockTestCase::testLoopify PASSED [ 26%] TestPyCIFRW.py::LoopBlockTestCase::testLoopifyCif PASSED [ 26%] TestPyCIFRW.py::LoopBlockTestCase::testPacketAttr PASSED [ 27%] TestPyCIFRW.py::LoopBlockTestCase::testPacketContents PASSED [ 28%] TestPyCIFRW.py::LoopBlockTestCase::testPacketMerge PASSED [ 28%] TestPyCIFRW.py::LoopBlockTestCase::testRemovePacket PASSED [ 29%] TestPyCIFRW.py::LoopBlockTestCase::testReplaceOrder PASSED [ 29%] TestPyCIFRW.py::BlockNameTestCase::testBlockName PASSED [ 30%] TestPyCIFRW.py::BlockNameTestCase::testBlockOverwrite PASSED [ 30%] TestPyCIFRW.py::BlockNameTestCase::testEmptyBlock PASSED [ 31%] TestPyCIFRW.py::FileWriteTestCase::testApostropheInOut PASSED [ 31%] TestPyCIFRW.py::FileWriteTestCase::testBadBeginning PASSED [ 32%] TestPyCIFRW.py::FileWriteTestCase::testCopySaveFrame PASSED [ 32%] TestPyCIFRW.py::FileWriteTestCase::testDupName PASSED [ 33%] TestPyCIFRW.py::FileWriteTestCase::testEmptyDict PASSED [ 34%] TestPyCIFRW.py::FileWriteTestCase::testEmptyStringInOut PASSED [ 34%] TestPyCIFRW.py::FileWriteTestCase::testFirstBlock PASSED [ 35%] TestPyCIFRW.py::FileWriteTestCase::testGetLoopData PASSED [ 35%] TestPyCIFRW.py::FileWriteTestCase::testItemChange PASSED [ 36%] TestPyCIFRW.py::FileWriteTestCase::testLongStringInOut PASSED [ 36%] TestPyCIFRW.py::FileWriteTestCase::testLoopDataInOut PASSED [ 37%] TestPyCIFRW.py::FileWriteTestCase::testLoopStringInOut PASSED [ 37%] TestPyCIFRW.py::FileWriteTestCase::testNumberInOut PASSED [ 38%] TestPyCIFRW.py::FileWriteTestCase::testPermissiveRead PASSED [ 39%] TestPyCIFRW.py::FileWriteTestCase::testPrefixProtocol PASSED [ 39%] TestPyCIFRW.py::FileWriteTestCase::testSemiWhiteSpace PASSED [ 40%] TestPyCIFRW.py::FileWriteTestCase::testStrayCharacter PASSED [ 40%] TestPyCIFRW.py::FileWriteTestCase::testStringInOut PASSED [ 41%] TestPyCIFRW.py::FileWriteTestCase::testWrongLoop PASSED [ 41%] TestPyCIFRW.py::SimpleWriteTestCase::testLong PASSED [ 42%] TestPyCIFRW.py::SimpleWriteTestCase::testNDString PASSED [ 42%] TestPyCIFRW.py::SimpleWriteTestCase::testNumpyArray PASSED [ 43%] TestPyCIFRW.py::SimpleWriteTestCase::testNumpyLoop PASSED [ 43%] TestPyCIFRW.py::TemplateTestCase::testStringInput PASSED [ 44%] TestPyCIFRW.py::TemplateTestCase::testTemplateInput PASSED [ 45%] TestPyCIFRW.py::TemplateTestCase::testTemplateOutputOrder PASSED [ 45%] TestPyCIFRW.py::GrammarTestCase::testAuto PASSED [ 46%] TestPyCIFRW.py::GrammarTestCase::testCIF2 PASSED [ 46%] TestPyCIFRW.py::GrammarTestCase::testFlexCIF2 PASSED [ 47%] TestPyCIFRW.py::GrammarTestCase::testFlexSTAR2 PASSED [ 47%] TestPyCIFRW.py::GrammarTestCase::testNew PASSED [ 48%] TestPyCIFRW.py::GrammarTestCase::testRoundTrip PASSED [ 48%] TestPyCIFRW.py::GrammarTestCase::testSTAR2 PASSED [ 49%] TestPyCIFRW.py::GrammarTestCase::testold PASSED [ 50%] TestPyCIFRW.py::ParentChildTestCase::testChangeParent PASSED [ 50%] TestPyCIFRW.py::ParentChildTestCase::testGetChildren PASSED [ 51%] TestPyCIFRW.py::ParentChildTestCase::testGetChildrenwithParent PASSED [ 51%] TestPyCIFRW.py::ParentChildTestCase::testGetParent PASSED [ 52%] TestPyCIFRW.py::ParentChildTestCase::testGoodRead PASSED [ 52%] TestPyCIFRW.py::ParentChildTestCase::testRename1 PASSED [ 53%] TestPyCIFRW.py::ParentChildTestCase::testRename2 PASSED [ 53%] TestPyCIFRW.py::ParentChildTestCase::testSetParent PASSED [ 54%] TestPyCIFRW.py::ParentChildTestCase::testUnlock PASSED [ 54%] TestPyCIFRW.py::DDLmTestCase::testRoundTrip PASSED [ 55%] TestPyCIFRW.py::DDLmTestCase::testTables PASSED [ 56%] TestPyCIFRW.py::DDLmTestCase::testTables2 PASSED [ 56%] TestPyCIFRW.py::DDLmTestCase::testTables3 PASSED [ 57%] TestPyCIFRW.py::DDLmTestCase::testTripleQuote PASSED [ 57%] TestPyCIFRW.py::DDLmTestCase::testUnNest PASSED [ 58%] TestPyCIFRW.py::DDLmTestCase::testgood PASSED [ 58%] TestPyCIFRW.py::DDLmTestCase::testold PASSED [ 59%] TestPyCIFRW.py::DDLmImportCase::testHeavyImport PASSED [ 59%] TestPyCIFRW.py::DDLmImportCase::testLightFullImport PASSED [ 60%] TestPyCIFRW.py::DDLmImportCase::testLightImport PASSED [ 60%] TestPyCIFRW.py::DictTestCase::testAllChildren PASSED [ 61%] TestPyCIFRW.py::DictTestCase::testCategoryRename PASSED [ 62%] TestPyCIFRW.py::DictTestCase::testChangeCategoryCategory PASSED [ 62%] TestPyCIFRW.py::DictTestCase::testChangeItemCategory PASSED [ 63%] TestPyCIFRW.py::DictTestCase::testChangeName PASSED [ 63%] TestPyCIFRW.py::DictTestCase::testDanglerChildren PASSED [ 64%] TestPyCIFRW.py::DictTestCase::testDanglers PASSED [ 64%] TestPyCIFRW.py::DictTestCase::testDeleteCategory PASSED [ 65%] TestPyCIFRW.py::DictTestCase::testDeleteDefinition PASSED [ 65%] TestPyCIFRW.py::DictTestCase::testFunnyLayout PASSED [ 66%] TestPyCIFRW.py::DictTestCase::testNewCategory PASSED [ 67%] TestPyCIFRW.py::DictTestCase::testNewDanglerCat PASSED [ 67%] TestPyCIFRW.py::DictTestCase::testNewDanglerDef PASSED [ 68%] TestPyCIFRW.py::DictTestCase::testNewDefinition PASSED [ 68%] TestPyCIFRW.py::DictTestCase::testSemanticChildren PASSED [ 69%] TestPyCIFRW.py::DictTestCase::testWriteDic PASSED [ 69%] TestPyCIFRW.py::DictTestCase::testdot PASSED [ 70%] TestPyCIFRW.py::DictTestCase::testnum_and_esd PASSED [ 70%] TestPyCIFRW.py::DDLmValueTestCase::testListConversion PASSED [ 71%] TestPyCIFRW.py::DDLmValueTestCase::testMatrixConversion PASSED [ 71%] TestPyCIFRW.py::DDLmValueTestCase::testSimpleListConversion PASSED [ 72%] TestPyCIFRW.py::DDLmValueTestCase::testSingleConversion PASSED [ 73%] TestPyCIFRW.py::DDLmValueTestCase::testTypeInterpretation PASSED [ 73%] TestPyCIFRW.py::DDLmValueTestCase::testValuesReturned PASSED [ 74%] TestPyCIFRW.py::DDL1TestCase::testItemEnum PASSED [ 74%] TestPyCIFRW.py::DDL1TestCase::testItemEsd PASSED [ 75%] TestPyCIFRW.py::DDL1TestCase::testItemLooping PASSED [ 75%] TestPyCIFRW.py::DDL1TestCase::testItemRange PASSED [ 76%] TestPyCIFRW.py::DDL1TestCase::testItemType PASSED [ 76%] TestPyCIFRW.py::DDL1TestCase::testListReference PASSED [ 77%] TestPyCIFRW.py::DDL1TestCase::testParentChild PASSED [ 78%] TestPyCIFRW.py::DDL1TestCase::testReport PASSED [ 78%] TestPyCIFRW.py::DDL1TestCase::testUniqueness PASSED [ 79%] TestPyCIFRW.py::DDL1TestCase::testUnknownItem PASSED [ 79%] TestPyCIFRW.py::DDLmDicTestCase::testMandatory PASSED [ 80%] TestPyCIFRW.py::DDLmDicTestCase::testNotMissingKey PASSED [ 80%] TestPyCIFRW.py::DDLmDicTestCase::testProhibited PASSED [ 81%] TestPyCIFRW.py::DDLmDicTestCase::testUnKeyed PASSED [ 81%] TestPyCIFRW.py::DDLmDicTestCase::testUnlooped PASSED [ 82%] TestPyCIFRW.py::DDLmDicTestCase::testWrongLoop PASSED [ 82%] TestPyCIFRW.py::FakeDicTestCase::testTypeConstruct PASSED [ 83%] TestPyCIFRW.py::DicEvalTestCase::testCalcOldAlias PASSED [ 84%] TestPyCIFRW.py::DicEvalTestCase::testCategoryMethod PASSED [ 84%] TestPyCIFRW.py::DicEvalTestCase::testCellVolume PASSED [ 85%] TestPyCIFRW.py::DicEvalTestCase::testDensity PASSED [ 85%] TestPyCIFRW.py::DicEvalTestCase::testEigenSystem PASSED [ 86%] TestPyCIFRW.py::DicEvalTestCase::testEmptyKey PASSED [ 86%] TestPyCIFRW.py::DicEvalTestCase::testFullCalcAlias PASSED [ 87%] TestPyCIFRW.py::DicEvalTestCase::testNoInCell XFAIL [ 87%] TestPyCIFRW.py::DicEvalTestCase::testReflnF XFAIL [ 88%] TestPyCIFRW.py::DicStructureTestCase::testCatKey PASSED [ 89%] TestPyCIFRW.py::DicStructureTestCase::testCatObj PASSED [ 89%] TestPyCIFRW.py::DicStructureTestCase::testCatObjKey PASSED [ 90%] TestPyCIFRW.py::DicStructureTestCase::testChildPacket PASSED [ 90%] TestPyCIFRW.py::DicStructureTestCase::testChildPacketMultiKey SKIPPED [ 91%] TestPyCIFRW.py::DicStructureTestCase::testEnumDefault PASSED [ 91%] TestPyCIFRW.py::DicStructureTestCase::testEquivKey PASSED [ 92%] TestPyCIFRW.py::DicStructureTestCase::testIntegerFilter PASSED [ 92%] TestPyCIFRW.py::DicStructureTestCase::testMultiPullback PASSED [ 93%] TestPyCIFRW.py::DicStructureTestCase::testNewAlias PASSED [ 93%] TestPyCIFRW.py::DicStructureTestCase::testOldAlias PASSED [ 94%] TestPyCIFRW.py::DicStructureTestCase::testPacketCalcs PASSED [ 95%] TestPyCIFRW.py::DicStructureTestCase::testPopulateFromFilter PASSED [ 95%] TestPyCIFRW.py::DicStructureTestCase::testPopulateFromMultiFilters PASSED [ 96%] TestPyCIFRW.py::DicStructureTestCase::testPopulateFromPullback PASSED [ 96%] TestPyCIFRW.py::DicStructureTestCase::testPopulateNonIDFromFilter PASSED [ 97%] TestPyCIFRW.py::DicStructureTestCase::testPrintOut PASSED [ 97%] TestPyCIFRW.py::DicStructureTestCase::testPullBack PASSED [ 98%] TestPyCIFRW.py::DicStructureTestCase::testRepeatedName PASSED [ 98%] TestPyCIFRW.py::DicStructureTestCase::testTextFilter PASSED [ 99%] TestPyCIFRW.py::BlockOutputOrderTestCase::testOutputOrder PASSED [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.13_pycifrw/build/TestPyCIFRW.py: 18 warnings :8: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. .pybuild/cpython3_3.13_pycifrw/build/TestPyCIFRW.py: 10196 warnings /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/drel/drel_runtime.py:74: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. return numpy.matrix(input_arg),True .pybuild/cpython3_3.13_pycifrw/build/TestPyCIFRW.py: 4975 warnings /usr/lib/python3/dist-packages/numpy/matrixlib/defmatrix.py:70: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. return matrix(data, dtype=dtype, copy=False) .pybuild/cpython3_3.13_pycifrw/build/TestPyCIFRW.py: 20 warnings :3: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ==== 179 passed, 1 skipped, 2 xfailed, 15209 warnings in 154.75s (0:02:34) ===== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-pycifrw/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py copying src/CifFile_module.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/YappsStarParser_1_1.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/YappsStarParser_1_0.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/YappsStarParser_STAR2.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/YappsStarParser_2_0.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/StarFile.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/TypeContentsParser.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/TypeContentsParser.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/YappsStarParser_1_1.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/CifFile_module.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/YappsStarParser_1_0.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/StarFile.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/YappsStarParser_STAR2.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/YappsStarParser_2_0.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile copying src/drel/py_from_ast.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/drel copying src/drel/drel_runtime.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/drel running build_ext running install_lib creating /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages creating /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/__pycache__/TestPyCIFRW.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/__pycache__ creating /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/yapps3_compiled_rt.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile creating /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/drel copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/drel/py_from_ast.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/drel copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/drel/__init__.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/drel copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/drel/drel_runtime.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/drel copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/drel/parser.out -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/drel copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/drel/drel_ast_yacc.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/drel creating /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/drel/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/drel/__pycache__/drel_ast_yacc.cpython-312.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/drel/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/drel/__pycache__/drel_lex.cpython-312.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/drel/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/drel/__pycache__/drel_runtime.cpython-312.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/drel/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/drel/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/drel/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/drel/__pycache__/py_from_ast.cpython-312.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/drel/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/drel/parsetab.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/drel copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/drel/drel_lex.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/drel copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/TypeContentsParser.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/YappsStarParser_1_1.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/StarScan.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/CifFile_module.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/__init__.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/YappsStarParser_1_0.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/StarFile.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/YappsStarParser_STAR2.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/YappsStarParser_2_0.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile creating /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/__pycache__/StarFile.cpython-312.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/__pycache__/YappsStarParser_STAR2.cpython-312.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/__pycache__/yapps3_compiled_rt.cpython-312.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/__pycache__/TypeContentsParser.cpython-312.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/__pycache__/YappsStarParser_1_1.cpython-312.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/__pycache__/YappsStarParser_1_0.cpython-312.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/__pycache__/YappsStarParser_2_0.cpython-312.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.12_pycifrw/build/CifFile/__pycache__/CifFile_module.cpython-312.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/__pycache__ byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/yapps3_compiled_rt.py to yapps3_compiled_rt.cpython-312.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/drel/py_from_ast.py to py_from_ast.cpython-312.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/drel/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/drel/drel_runtime.py to drel_runtime.cpython-312.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/drel/drel_ast_yacc.py to drel_ast_yacc.cpython-312.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/drel/parsetab.py to parsetab.cpython-312.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/drel/drel_lex.py to drel_lex.cpython-312.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/TypeContentsParser.py to TypeContentsParser.cpython-312.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/YappsStarParser_1_1.py to YappsStarParser_1_1.cpython-312.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/CifFile_module.py to CifFile_module.cpython-312.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/YappsStarParser_1_0.py to YappsStarParser_1_0.cpython-312.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/StarFile.py to StarFile.cpython-312.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/YappsStarParser_STAR2.py to YappsStarParser_STAR2.cpython-312.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/CifFile/YappsStarParser_2_0.py to YappsStarParser_2_0.cpython-312.pyc running install_egg_info running egg_info creating PyCifRW.egg-info writing PyCifRW.egg-info/PKG-INFO writing dependency_links to PyCifRW.egg-info/dependency_links.txt writing top-level names to PyCifRW.egg-info/top_level.txt writing manifest file 'PyCifRW.egg-info/SOURCES.txt' reading manifest file 'PyCifRW.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'src/Changelog' warning: no files found matching 'docs/*.html' warning: no files found matching 'docs/CifFile/*.html' adding license file 'LICENSE' writing manifest file 'PyCifRW.egg-info/SOURCES.txt' Copying PyCifRW.egg-info to /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.12/dist-packages/PyCifRW-4.4.6.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py copying src/CifFile_module.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/YappsStarParser_1_1.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/YappsStarParser_1_0.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/YappsStarParser_STAR2.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/YappsStarParser_2_0.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/StarFile.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/TypeContentsParser.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/TypeContentsParser.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/YappsStarParser_1_1.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/CifFile_module.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/YappsStarParser_1_0.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/StarFile.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/YappsStarParser_STAR2.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/YappsStarParser_2_0.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile copying src/drel/py_from_ast.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/drel copying src/drel/drel_runtime.py -> /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/drel running build_ext running install_lib creating /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages creating /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/__pycache__/TestPyCIFRW.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/__pycache__ creating /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/yapps3_compiled_rt.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile creating /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/drel copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/drel/py_from_ast.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/drel copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/drel/__init__.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/drel copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/drel/drel_runtime.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/drel copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/drel/parser.out -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/drel copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/drel/drel_ast_yacc.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/drel creating /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/drel/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/drel/__pycache__/drel_lex.cpython-313.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/drel/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/drel/__pycache__/py_from_ast.cpython-313.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/drel/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/drel/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/drel/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/drel/__pycache__/drel_runtime.cpython-313.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/drel/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/drel/__pycache__/drel_ast_yacc.cpython-313.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/drel/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/drel/parsetab.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/drel copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/drel/drel_lex.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/drel copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/TypeContentsParser.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/YappsStarParser_1_1.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/CifFile_module.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/StarScan.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/__init__.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/YappsStarParser_1_0.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/StarFile.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/YappsStarParser_STAR2.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/YappsStarParser_2_0.py -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile creating /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/__pycache__/CifFile_module.cpython-313.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/__pycache__/YappsStarParser_1_1.cpython-313.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/__pycache__/YappsStarParser_1_0.cpython-313.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/__pycache__/YappsStarParser_2_0.cpython-313.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/__pycache__/StarFile.cpython-313.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/__pycache__/TypeContentsParser.cpython-313.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/__pycache__/yapps3_compiled_rt.cpython-313.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/__pycache__ copying /build/reproducible-path/pycifrw-4.4.6/.pybuild/cpython3_3.13_pycifrw/build/CifFile/__pycache__/YappsStarParser_STAR2.cpython-313.pyc -> /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/__pycache__ byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/yapps3_compiled_rt.py to yapps3_compiled_rt.cpython-313.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/drel/py_from_ast.py to py_from_ast.cpython-313.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/drel/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/drel/drel_runtime.py to drel_runtime.cpython-313.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/drel/drel_ast_yacc.py to drel_ast_yacc.cpython-313.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/drel/parsetab.py to parsetab.cpython-313.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/drel/drel_lex.py to drel_lex.cpython-313.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/TypeContentsParser.py to TypeContentsParser.cpython-313.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/YappsStarParser_1_1.py to YappsStarParser_1_1.cpython-313.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/CifFile_module.py to CifFile_module.cpython-313.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/YappsStarParser_1_0.py to YappsStarParser_1_0.cpython-313.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/StarFile.py to StarFile.cpython-313.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/YappsStarParser_STAR2.py to YappsStarParser_STAR2.cpython-313.pyc byte-compiling /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/YappsStarParser_2_0.py to YappsStarParser_2_0.cpython-313.pyc running install_egg_info running egg_info writing PyCifRW.egg-info/PKG-INFO writing dependency_links to PyCifRW.egg-info/dependency_links.txt writing top-level names to PyCifRW.egg-info/top_level.txt reading manifest file 'PyCifRW.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'src/Changelog' warning: no files found matching 'docs/*.html' warning: no files found matching 'docs/CifFile/*.html' adding license file 'LICENSE' writing manifest file 'PyCifRW.egg-info/SOURCES.txt' Copying PyCifRW.egg-info to /build/reproducible-path/pycifrw-4.4.6/debian/python3-pycifrw/usr/lib/python3.13/dist-packages/PyCifRW-4.4.6.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/pycifrw-4.4.6' dh_installchangelogs RELEASENOTES make[1]: Leaving directory '/build/reproducible-path/pycifrw-4.4.6' dh_python3 -O--buildsystem=pybuild W: dh_python3 fs:125: Paths differ: debian/python3-pycifrw/usr/lib/python3.13/dist-packages/CifFile/drel/parsetab.py and debian/python3-pycifrw/usr/lib/python3/dist-packages/CifFile/drel/parsetab.py dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Provides field of package python3-pycifrw: substitution variable ${python3:Provides} used, but is not defined dpkg-gencontrol: warning: Provides field of package python3-pycifrw: substitution variable ${python3:Provides} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pycifrw' in '../python3-pycifrw_4.4.6-4_amd64.deb'. dpkg-deb: building package 'python3-pycifrw-dbgsym' in '../python3-pycifrw-dbgsym_4.4.6-4_amd64.deb'. dpkg-genbuildinfo --build=binary -O../pycifrw_4.4.6-4_amd64.buildinfo dpkg-genchanges --build=binary -O../pycifrw_4.4.6-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from pycifrw-4.4.6/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2508069 and its subdirectories I: Current time: Sun Mar 1 04:15:28 -12 2026 I: pbuilder-time-stamp: 1772381728 Mon Jan 27 09:52:29 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Mon Jan 27 09:52:29 UTC 2025 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Mon Jan 27 10:28:26 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Mon Jan 27 10:28:26 UTC 2025 I: pycifrw_4.4.6-4_amd64.changes: Format: 1.8 Date: Thu, 14 Nov 2024 23:05:47 +0100 Source: pycifrw Binary: python3-pycifrw python3-pycifrw-dbgsym Architecture: amd64 Version: 4.4.6-4 Distribution: unstable Urgency: medium Maintainer: Debian Python Team Changed-By: Alexandre Detiste Description: python3-pycifrw - CIF/STAR file support for Python Closes: 1084712 Changes: pycifrw (4.4.6-4) unstable; urgency=medium . * Team Upload * Add dependency on python3-legacy-cgi (Closes: #1084712) * Use dh-sequence-python3 * Set Rules-Requires-Root: no Checksums-Sha1: 250a00ec29cd00cefecb8faa5aa50f3c06aa9352 7607 pycifrw_4.4.6-4_amd64.buildinfo eb82cd5be21009fa040e4fadb4dc7c107d53cf5f 33216 python3-pycifrw-dbgsym_4.4.6-4_amd64.deb 20ad2fa9ebd9e8ec51f46dab00edac119ecc0451 124188 python3-pycifrw_4.4.6-4_amd64.deb Checksums-Sha256: fbd154f32d3210708c88517c321b1aa41cc0b776a3b2cd2856c53558b0259929 7607 pycifrw_4.4.6-4_amd64.buildinfo d72cd9a1122c5e39cc3f81a4efdb611a210164856a2b7511cdbc88267ebbfaaf 33216 python3-pycifrw-dbgsym_4.4.6-4_amd64.deb c5f78a704f5a776724ae634eb873b8ed0afd8bdfb7bbde2923329326d9648360 124188 python3-pycifrw_4.4.6-4_amd64.deb Files: 1aeb82a586e77a67d6772eb3a7a82add 7607 python optional pycifrw_4.4.6-4_amd64.buildinfo 05702b2ffa231bf9b73bccd085219812 33216 debug optional python3-pycifrw-dbgsym_4.4.6-4_amd64.deb c7d721c4742c8a4e2d19323f85e16d37 124188 python optional python3-pycifrw_4.4.6-4_amd64.deb Mon Jan 27 10:28:27 UTC 2025 I: diffoscope 286 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_26-30552.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.B231Su9A/pycifrw_4.4.6-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.B231Su9A/pycifrw_4.4.6-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.B231Su9A/pycifrw_4.4.6-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.B231Su9A/b1/pycifrw_4.4.6-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.B231Su9A/b2/pycifrw_4.4.6-4_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 223ms CPU time consumed: 224ms Mon Jan 27 10:28:28 UTC 2025 I: diffoscope 286 found no differences in the changes files, and a .buildinfo file also exists. Mon Jan 27 10:28:28 UTC 2025 I: pycifrw from unstable built successfully and reproducibly on amd64. Mon Jan 27 10:28:29 UTC 2025 I: Submitting .buildinfo files to external archives: Mon Jan 27 10:28:29 UTC 2025 I: Submitting 12K b1/pycifrw_4.4.6-4_amd64.buildinfo.asc Mon Jan 27 10:28:30 UTC 2025 I: Submitting 12K b2/pycifrw_4.4.6-4_amd64.buildinfo.asc Mon Jan 27 10:28:32 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Jan 27 10:28:32 UTC 2025 I: Done submitting .buildinfo files. Mon Jan 27 10:28:32 UTC 2025 I: Removing signed pycifrw_4.4.6-4_amd64.buildinfo.asc files: removed './b1/pycifrw_4.4.6-4_amd64.buildinfo.asc' removed './b2/pycifrw_4.4.6-4_amd64.buildinfo.asc'