Sat Jan 25 19:18:59 UTC 2025  I: starting to build plip/unstable/amd64 on jenkins on '2025-01-25 19:18'
Sat Jan 25 19:18:59 UTC 2025  I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_18/28808/console.log
Sat Jan 25 19:18:59 UTC 2025  I: Downloading source for unstable/plip=2.4.0+dfsg-2
--2025-01-25 19:18:59--  http://deb.debian.org/debian/pool/main/p/plip/plip_2.4.0%2bdfsg-2.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2094 (2.0K) [text/prs.lines.tag]
Saving to: ‘plip_2.4.0+dfsg-2.dsc’

     0K ..                                                    100%  292M=0s

2025-01-25 19:18:59 (292 MB/s) - ‘plip_2.4.0+dfsg-2.dsc’ saved [2094/2094]

Sat Jan 25 19:18:59 UTC 2025  I: plip_2.4.0+dfsg-2.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: plip
Binary: plip
Architecture: all
Version: 2.4.0+dfsg-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Alexandre Mestiashvili <mestia@debian.org>
Homepage: https://projects.biotec.tu-dresden.de/plip-web/plip/
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/plip
Vcs-Git: https://salsa.debian.org/med-team/plip.git
Testsuite: autopkgtest
Testsuite-Triggers: python3-lxml
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, python3-all, python3-lxml, python3-numpy, python3-openbabel, python3-setuptools
Package-List:
 plip deb python optional arch=all
Checksums-Sha1:
 d27ef18276b63cfd077f6ed751388755a016a68a 82600 plip_2.4.0+dfsg.orig.tar.xz
 dc17e977275583ad678d27c0cd90c9304ebd3b57 6104 plip_2.4.0+dfsg-2.debian.tar.xz
Checksums-Sha256:
 78d99b5c8f346c2b92893d4ff0ed3635853d0cc516c300f312fa0bf92862e643 82600 plip_2.4.0+dfsg.orig.tar.xz
 122d5755a5dd077795959cd5eb6fe1bb777176c3379a221a24aa041788eddc90 6104 plip_2.4.0+dfsg-2.debian.tar.xz
Files:
 0cd42b7252844a57029a77f275e4d993 82600 plip_2.4.0+dfsg.orig.tar.xz
 c48533a7032b630d0547ec6585508987 6104 plip_2.4.0+dfsg-2.debian.tar.xz

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Sat Jan 25 19:18:59 UTC 2025  I: Checking whether the package is not for us
Sat Jan 25 19:18:59 UTC 2025  I: Starting 1st build on remote node ionos5-amd64.debian.net.
Sat Jan 25 19:18:59 UTC 2025  I: Preparing to do remote build '1' on ionos5-amd64.debian.net.
Sat Jan 25 19:23:40 UTC 2025  I: Deleting $TMPDIR on ionos5-amd64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Fri Feb 27 13:42:03 -12 2026
I: pbuilder-time-stamp: 1772242923
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [plip_2.4.0+dfsg-2.dsc]
I: copying [./plip_2.4.0+dfsg.orig.tar.xz]
I: copying [./plip_2.4.0+dfsg-2.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./plip_2.4.0+dfsg-2.dsc: unsupported subcommand
dpkg-source: info: extracting plip in plip-2.4.0+dfsg
dpkg-source: info: unpacking plip_2.4.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking plip_2.4.0+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying revert_imagemagick_changes.patch
dpkg-source: info: applying setup.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/618281/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='amd64'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 '
  DISTRIBUTION='unstable'
  HOME='/root'
  HOST_ARCH='amd64'
  IFS=' 	
  '
  INVOCATION_ID='08bfaa647f104fdcae4e5acd579e8210'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='618281'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LXi2EBde/pbuilderrc_Ym6l --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LXi2EBde/b1 --logfile b1/build.log plip_2.4.0+dfsg-2.dsc'
  SUDO_GID='110'
  SUDO_UID='105'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://213.165.73.152:3128'
I: uname -a
  Linux ionos5-amd64 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Nov 22  2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/618281/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, python3-all, python3-lxml, python3-numpy, python3-openbabel, python3-setuptools
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19832 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however:
  Package dh-sequence-python3 is not installed.
 pbuilder-satisfydepends-dummy depends on help2man; however:
  Package help2man is not installed.
 pbuilder-satisfydepends-dummy depends on python3-all; however:
  Package python3-all is not installed.
 pbuilder-satisfydepends-dummy depends on python3-lxml; however:
  Package python3-lxml is not installed.
 pbuilder-satisfydepends-dummy depends on python3-numpy; however:
  Package python3-numpy is not installed.
 pbuilder-satisfydepends-dummy depends on python3-openbabel; however:
  Package python3-openbabel is not installed.
 pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
  Package python3-setuptools is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgcrypt20{a} libgfortran5{a} libgpg-error0{a} libgssapi-krb5-2{a} libicu72{a} libinchi1.07{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblocale-gettext-perl{a} libmaeparser1{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenbabel7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} libxslt1.1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-lxml{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-openbabel{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl krb5-locales libarchive-cpio-perl libgpg-error-l10n libltdl-dev libmail-sendmail-perl lynx python3-bs4 python3-cssselect python3-html5lib wget 
0 packages upgraded, 103 newly installed, 0 to remove and 0 not upgraded.
Need to get 58.1 MB of archives. After unpacking 239 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB]
Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.1-3 [858 kB]
Get: 3 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB]
Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.1-3 [2202 kB]
Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB]
Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB]
Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB]
Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025a-1 [259 kB]
Get: 9 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB]
Get: 10 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB]
Get: 11 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB]
Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.1-3 [1973 kB]
Get: 13 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.1-3 [740 kB]
Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B]
Get: 15 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.1-2 [28.0 kB]
Get: 16 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.8-5 [817 kB]
Get: 17 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.8-5 [2164 kB]
Get: 18 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get: 19 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB]
Get: 20 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB]
Get: 21 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB]
Get: 22 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB]
Get: 23 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get: 24 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB]
Get: 25 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-1 [92.2 kB]
Get: 26 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get: 27 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB]
Get: 28 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB]
Get: 29 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB]
Get: 30 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 31 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get: 32 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB]
Get: 33 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 34 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-2 [539 kB]
Get: 35 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 36 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 37 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB]
Get: 38 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-1 [8584 B]
Get: 39 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get: 40 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get: 41 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB]
Get: 42 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB]
Get: 43 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB]
Get: 44 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB]
Get: 45 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 46 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 47 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB]
Get: 48 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 49 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB]
Get: 50 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 51 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB]
Get: 52 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB]
Get: 53 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 54 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 55 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB]
Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB]
Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.6.0-1 [720 kB]
Get: 59 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250108 [113 kB]
Get: 60 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 61 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 62 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2 [317 kB]
Get: 63 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB]
Get: 64 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-4 [152 kB]
Get: 65 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB]
Get: 66 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.45-1 [281 kB]
Get: 67 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB]
Get: 68 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2 [391 kB]
Get: 69 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB]
Get: 70 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB]
Get: 71 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB]
Get: 72 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB]
Get: 73 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB]
Get: 74 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB]
Get: 75 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB]
Get: 76 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB]
Get: 77 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB]
Get: 78 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b4 [27.8 kB]
Get: 79 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.2-2 [535 kB]
Get: 80 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB]
Get: 81 http://deb.debian.org/debian unstable/main amd64 libgpg-error0 amd64 1.51-3 [82.2 kB]
Get: 82 http://deb.debian.org/debian unstable/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB]
Get: 83 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-14 [837 kB]
Get: 84 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB]
Get: 85 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB]
Get: 86 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B]
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Get: 88 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB]
Get: 89 http://deb.debian.org/debian unstable/main amd64 libinchi1.07 amd64 1.07.2+dfsg-1 [556 kB]
Get: 90 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB]
Get: 91 http://deb.debian.org/debian unstable/main amd64 libmaeparser1 amd64 1.3.1-1+b2 [94.0 kB]
Get: 92 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get: 93 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB]
Get: 94 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB]
Get: 95 http://deb.debian.org/debian unstable/main amd64 libopenbabel7 amd64 3.1.1+dfsg-11+b3 [3253 kB]
Get: 96 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.8-5 [1971 kB]
Get: 97 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.1-3 [2151 kB]
Get: 98 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.35-1.1+b1 [233 kB]
Get: 99 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.8-5 [677 kB]
Get: 100 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.1-2 [1056 B]
Get: 101 http://deb.debian.org/debian unstable/main amd64 python3-lxml amd64 5.3.0-1+b1 [1676 kB]
Get: 102 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:1.26.4+ds-13 [4736 kB]
Get: 103 http://deb.debian.org/debian unstable/main amd64 python3-openbabel amd64 3.1.1+dfsg-11+b3 [572 kB]
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Preparing to unpack .../81-libpython3.12-stdlib_3.12.8-5_amd64.deb ...
Unpacking libpython3.12-stdlib:amd64 (3.12.8-5) ...
Selecting previously unselected package libpython3.13:amd64.
Preparing to unpack .../82-libpython3.13_3.13.1-3_amd64.deb ...
Unpacking libpython3.13:amd64 (3.13.1-3) ...
Selecting previously unselected package libxslt1.1:amd64.
Preparing to unpack .../83-libxslt1.1_1.1.35-1.1+b1_amd64.deb ...
Unpacking libxslt1.1:amd64 (1.1.35-1.1+b1) ...
Selecting previously unselected package python3.12.
Preparing to unpack .../84-python3.12_3.12.8-5_amd64.deb ...
Unpacking python3.12 (3.12.8-5) ...
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Unpacking python3-all (3.13.1-2) ...
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Preparing to unpack .../86-python3-lxml_5.3.0-1+b1_amd64.deb ...
Unpacking python3-lxml:amd64 (5.3.0-1+b1) ...
Selecting previously unselected package python3-numpy.
Preparing to unpack .../87-python3-numpy_1%3a1.26.4+ds-13_amd64.deb ...
Unpacking python3-numpy (1:1.26.4+ds-13) ...
Selecting previously unselected package python3-openbabel.
Preparing to unpack .../88-python3-openbabel_3.1.1+dfsg-11+b3_amd64.deb ...
Unpacking python3-openbabel (3.1.1+dfsg-11+b3) ...
Setting up media-types (10.1.0) ...
Setting up libpipeline1:amd64 (1.5.8-1) ...
Setting up libpixman-1-0:amd64 (0.44.0-3) ...
Setting up libxau6:amd64 (1:1.0.11-1) ...
Setting up libxdmcp6:amd64 (1:1.1.5-1) ...
Setting up libkeyutils1:amd64 (1.6.3-4) ...
Setting up libxcb1:amd64 (1.17.0-2+b1) ...
Setting up libicu72:amd64 (72.1-6) ...
Setting up bsdextrautils (2.40.4-1) ...
Setting up libgpg-error0:amd64 (1.51-3) ...
Setting up libmagic-mgc (1:5.45-3+b1) ...
Setting up libxcb-render0:amd64 (1.17.0-2+b1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libtirpc-common (1.3.4+ds-1.3) ...
Setting up libdebhelper-perl (13.24.1) ...
Setting up libbrotli1:amd64 (1.1.0-2+b6) ...
Setting up libmagic1t64:amd64 (1:5.45-3+b1) ...
Setting up libpython3.12-minimal:amd64 (3.12.8-5) ...
Setting up gettext-base (0.23.1-1) ...
Setting up m4 (1.4.19-5) ...
Setting up libgcrypt20:amd64 (1.11.0-7) ...
Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ...
Setting up libcom-err2:amd64 (1.47.2-1) ...
Setting up file (1:5.45-3+b1) ...
Setting up libelf1t64:amd64 (0.192-4) ...
Setting up libkrb5support0:amd64 (1.21.3-4) ...
Setting up libmaeparser1:amd64 (1.3.1-1+b2) ...
Setting up tzdata (2025a-1) ...

Current default time zone: 'Etc/UTC'
Local time is now:      Sat Feb 28 01:45:07 UTC 2026.
Universal Time is now:  Sat Feb 28 01:45:07 UTC 2026.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

Setting up autotools-dev (20220109.1) ...
Setting up libblas3:amd64 (3.12.0-4) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
Setting up libx11-data (2:1.8.10-2) ...
Setting up libunistring5:amd64 (1.3-1) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libpng16-16t64:amd64 (1.6.45-1) ...
Setting up autopoint (0.23.1-1) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up libk5crypto3:amd64 (1.21.3-4) ...
Setting up libgfortran5:amd64 (14.2.0-14) ...
Setting up autoconf (2.72-3) ...
Setting up libffi8:amd64 (3.4.6-1) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.24) ...
Setting up libuchardet0:amd64 (0.0.8-1+b2) ...
Setting up libx11-6:amd64 (2:1.8.10-2) ...
Setting up netbase (6.4) ...
Setting up libkrb5-3:amd64 (1.21.3-4) ...
Setting up libinchi1.07 (1.07.2+dfsg-1) ...
Setting up readline-common (8.2-6) ...
Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up liblocale-gettext-perl (1.07-7+b1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.1-1) ...
Setting up python3.12-minimal (3.12.8-5) ...
Setting up liblapack3:amd64 (3.12.0-4) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
Setting up gettext (0.23.1-1) ...
Setting up libxrender1:amd64 (1:0.9.10-1.1+b4) ...
Setting up libtool (2.5.4-2) ...
Setting up fontconfig-config (2.15.0-2) ...
Setting up libxext6:amd64 (2:1.3.4-1+b3) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up help2man (1.49.3) ...
Setting up dh-autoreconf (20) ...
Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ...
Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ...
Setting up libreadline8t64:amd64 (8.2-6) ...
Setting up dh-strip-nondeterminism (1.14.1-1) ...
Setting up groff-base (1.23.0-7) ...
Setting up libxslt1.1:amd64 (1.1.35-1.1+b1) ...
Setting up libfontconfig1:amd64 (2.15.0-2) ...
Setting up libpython3.13-stdlib:amd64 (3.13.1-3) ...
Setting up libpython3-stdlib:amd64 (3.13.1-2) ...
Setting up libpython3.13:amd64 (3.13.1-3) ...
Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ...
Setting up python3.13 (3.13.1-3) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up python3 (3.13.1-2) ...
Setting up python3-zipp (3.21.0-1) ...
Setting up python3-autocommand (2.2.2-3) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libcairo2:amd64 (1.18.2-2) ...
Setting up python3-typing-extensions (4.12.2-2) ...
Setting up python3-numpy (1:1.26.4+ds-13) ...
Setting up python3-lxml:amd64 (5.3.0-1+b1) ...
Setting up libnsl2:amd64 (1.3.0-3+b3) ...
Setting up python3-more-itertools (10.6.0-1) ...
Setting up python3-jaraco.functools (4.1.0-1) ...
Setting up libpython3.12-stdlib:amd64 (3.12.8-5) ...
Setting up python3-jaraco.context (6.0.0-1) ...
Setting up python3.12 (3.12.8-5) ...
Setting up python3-typeguard (4.4.1-1) ...
Setting up python3-all (3.13.1-2) ...
Setting up libopenbabel7 (3.1.1+dfsg-11+b3) ...
Setting up debhelper (13.24.1) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up python3-jaraco.text (4.0.0-1) ...
Setting up python3-pkg-resources (75.6.0-1) ...
Setting up python3-setuptools (75.6.0-1) ...
Setting up python3-openbabel (3.1.1+dfsg-11+b3) ...
Setting up dh-python (6.20250108) ...
Processing triggers for libc-bin (2.40-6) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/plip-2.4.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../plip_2.4.0+dfsg-2_source.changes
dpkg-buildpackage: info: source package plip
dpkg-buildpackage: info: source version 2.4.0+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Alexandre Mestiashvili <mestia@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh clean --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
	pybuild --clean -i python{version} -p "3.12 3.13"
I: pybuild base:311: python3.12 setup.py clean 
/usr/lib/python3/dist-packages/setuptools/dist.py:488: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self.warn_dash_deprecation(opt, section)
running clean
removing '/build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build' (and everything under it)
'build/bdist.linux-x86_64' does not exist -- can't clean it
'build/scripts-3.12' does not exist -- can't clean it
I: pybuild base:311: python3.13 setup.py clean 
/usr/lib/python3/dist-packages/setuptools/dist.py:488: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self.warn_dash_deprecation(opt, section)
running clean
removing '/build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build' (and everything under it)
'build/bdist.linux-x86_64' does not exist -- can't clean it
'build/scripts-3.13' does not exist -- can't clean it
	rm -rf .pybuild/
	find . -name \*.pyc -exec rm {} \;
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
	rm -f debian/debhelper-build-stamp
	rm -rf debian/.debhelper/
	rm -f -- debian/plip.substvars debian/files
	rm -fr -- debian/plip/ debian/tmp/
	find .  \( \( \
		\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
	        \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
		\) -exec rm -f {} + \) -o \
		\( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \)
 debian/rules binary
dh binary --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
	pybuild --configure -i python{version} -p "3.12 3.13"
I: pybuild base:311: python3.12 setup.py config 
/usr/lib/python3/dist-packages/setuptools/dist.py:488: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self.warn_dash_deprecation(opt, section)
running config
I: pybuild base:311: python3.13 setup.py config 
/usr/lib/python3/dist-packages/setuptools/dist.py:488: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self.warn_dash_deprecation(opt, section)
running config
   dh_auto_build -O--buildsystem=pybuild
	pybuild --build -i python{version} -p "3.12 3.13"
I: pybuild base:311: /usr/bin/python3.12 setup.py build 
/usr/lib/python3/dist-packages/setuptools/dist.py:488: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self.warn_dash_deprecation(opt, section)
running build
running build_py
creating /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip
copying plip/__init__.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip
copying plip/plipcmd.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip
creating /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test
copying plip/test/test_water_bridges.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test
copying plip/test/test_command_line.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test
copying plip/test/test_metal_coordination.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test
copying plip/test/test_literature_validated.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test
copying plip/test/test_remote_services.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test
copying plip/test/test_structure_processing.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test
copying plip/test/test_xml_writer.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test
copying plip/test/test_salt_bridges.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test
copying plip/test/__init__.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test
copying plip/test/test_visualization.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test
copying plip/test/test_basic_functions.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test
copying plip/test/test_intra.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test
copying plip/test/test_hydrogen_bonds.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test
copying plip/test/test_pi_stacking.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test
copying plip/test/test_xml_parser.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test
creating /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/structure
copying plip/structure/detection.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/structure
copying plip/structure/__init__.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/structure
copying plip/structure/preparation.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/structure
creating /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/visualization
copying plip/visualization/visualize.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/visualization
copying plip/visualization/chimera.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/visualization
copying plip/visualization/__init__.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/visualization
copying plip/visualization/pymol.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/visualization
creating /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/exchange
copying plip/exchange/report.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/exchange
copying plip/exchange/xml.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/exchange
copying plip/exchange/json.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/exchange
copying plip/exchange/__init__.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/exchange
copying plip/exchange/webservices.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/exchange
creating /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic
copying plip/basic/supplemental.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic
copying plip/basic/logger.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic
copying plip/basic/config.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic
copying plip/basic/__init__.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic
copying plip/basic/parallel.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic
copying plip/basic/remote.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic
running build_scripts
creating build/scripts-3.12
copying and adjusting plip/plipcmd.py -> build/scripts-3.12
changing mode of build/scripts-3.12/plipcmd.py from 644 to 755
I: pybuild base:311: /usr/bin/python3 setup.py build 
/usr/lib/python3/dist-packages/setuptools/dist.py:488: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self.warn_dash_deprecation(opt, section)
running build
running build_py
creating /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip
copying plip/__init__.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip
copying plip/plipcmd.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip
creating /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test
copying plip/test/test_water_bridges.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test
copying plip/test/test_command_line.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test
copying plip/test/test_metal_coordination.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test
copying plip/test/test_literature_validated.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test
copying plip/test/test_remote_services.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test
copying plip/test/test_structure_processing.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test
copying plip/test/test_xml_writer.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test
copying plip/test/test_salt_bridges.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test
copying plip/test/__init__.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test
copying plip/test/test_visualization.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test
copying plip/test/test_basic_functions.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test
copying plip/test/test_intra.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test
copying plip/test/test_hydrogen_bonds.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test
copying plip/test/test_pi_stacking.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test
copying plip/test/test_xml_parser.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test
creating /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/structure
copying plip/structure/detection.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/structure
copying plip/structure/__init__.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/structure
copying plip/structure/preparation.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/structure
creating /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/visualization
copying plip/visualization/visualize.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/visualization
copying plip/visualization/chimera.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/visualization
copying plip/visualization/__init__.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/visualization
copying plip/visualization/pymol.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/visualization
creating /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/exchange
copying plip/exchange/report.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/exchange
copying plip/exchange/xml.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/exchange
copying plip/exchange/json.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/exchange
copying plip/exchange/__init__.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/exchange
copying plip/exchange/webservices.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/exchange
creating /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/basic
copying plip/basic/supplemental.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/basic
copying plip/basic/logger.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/basic
copying plip/basic/config.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/basic
copying plip/basic/__init__.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/basic
copying plip/basic/parallel.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/basic
copying plip/basic/remote.py -> /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/basic
running build_scripts
creating build/scripts-3.13
copying and adjusting plip/plipcmd.py -> build/scripts-3.13
changing mode of build/scripts-3.13/plipcmd.py from 644 to 755
   debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/plip-2.4.0+dfsg'
# skip all other tests since they require exluded pdb files
export PYTHONPATH=/build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/; \
debian/tests/xml-parser
make[1]: Leaving directory '/build/reproducible-path/plip-2.4.0+dfsg'
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=pybuild
   dh_prep -O--buildsystem=pybuild
	rm -f -- debian/plip.substvars
	rm -fr -- debian/.debhelper/generated/plip/ debian/plip/ debian/tmp/
   debian/rules override_dh_auto_install
make[1]: Entering directory '/build/reproducible-path/plip-2.4.0+dfsg'
dh_auto_install
	install -m0755 -d /build/reproducible-path/plip-2.4.0\+dfsg/debian/plip
	pybuild --install -i python{version} -p "3.12 3.13" --dest-dir=/build/reproducible-path/plip-2.4.0\+dfsg/debian/plip
I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/plip-2.4.0+dfsg/debian/plip 
/usr/lib/python3/dist-packages/setuptools/dist.py:488: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self.warn_dash_deprecation(opt, section)
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
        ********************************************************************************

!!
  self.initialize_options()
running build
running build_py
running build_scripts
running install_lib
creating /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages
creating /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip
creating /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_water_bridges.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_command_line.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_metal_coordination.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_literature_validated.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_remote_services.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_structure_processing.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_xml_writer.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_salt_bridges.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/__init__.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_visualization.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_basic_functions.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_intra.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_hydrogen_bonds.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_pi_stacking.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_xml_parser.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test
creating /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/structure
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/structure/detection.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/structure
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/structure/__init__.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/structure
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/structure/preparation.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/structure
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/__init__.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip
creating /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/visualization
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/visualization/visualize.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/visualization
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/visualization/chimera.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/visualization
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/visualization/__init__.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/visualization
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/visualization/pymol.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/visualization
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/plipcmd.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip
creating /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/exchange
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/exchange/report.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/exchange
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/exchange/xml.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/exchange
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/exchange/json.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/exchange
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/exchange/__init__.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/exchange
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/exchange/webservices.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/exchange
creating /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic/supplemental.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic/logger.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic/config.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic/__init__.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic/parallel.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic/remote.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_water_bridges.py to test_water_bridges.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_command_line.py to test_command_line.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_metal_coordination.py to test_metal_coordination.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_literature_validated.py to test_literature_validated.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_remote_services.py to test_remote_services.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_structure_processing.py to test_structure_processing.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_xml_writer.py to test_xml_writer.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_salt_bridges.py to test_salt_bridges.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_visualization.py to test_visualization.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_basic_functions.py to test_basic_functions.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_intra.py to test_intra.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_hydrogen_bonds.py to test_hydrogen_bonds.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_pi_stacking.py to test_pi_stacking.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_xml_parser.py to test_xml_parser.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/structure/detection.py to detection.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/structure/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/structure/preparation.py to preparation.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/visualization/visualize.py to visualize.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/visualization/chimera.py to chimera.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/visualization/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/visualization/pymol.py to pymol.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/plipcmd.py to plipcmd.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/exchange/report.py to report.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/exchange/xml.py to xml.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/exchange/json.py to json.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/exchange/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/exchange/webservices.py to webservices.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic/supplemental.py to supplemental.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic/logger.py to logger.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic/config.py to config.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic/parallel.py to parallel.cpython-312.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic/remote.py to remote.cpython-312.pyc
running install_egg_info
running egg_info
creating plip.egg-info
writing plip.egg-info/PKG-INFO
writing dependency_links to plip.egg-info/dependency_links.txt
writing entry points to plip.egg-info/entry_points.txt
writing requirements to plip.egg-info/requires.txt
writing top-level names to plip.egg-info/top_level.txt
writing manifest file 'plip.egg-info/SOURCES.txt'
reading manifest file 'plip.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.txt'
writing manifest file 'plip.egg-info/SOURCES.txt'
Copying plip.egg-info to /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip-2.4.0.egg-info
Skipping SOURCES.txt
running install_scripts
creating /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/bin
copying build/scripts-3.12/plipcmd.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/bin
changing mode of /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/bin/plipcmd.py to 755
Installing plip script to /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/bin
I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/plip-2.4.0+dfsg/debian/plip 
/usr/lib/python3/dist-packages/setuptools/dist.py:488: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self.warn_dash_deprecation(opt, section)
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
        ********************************************************************************

!!
  self.initialize_options()
running build
running build_py
running build_scripts
running install_lib
creating /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages
creating /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip
creating /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test/test_water_bridges.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test/test_command_line.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test/test_metal_coordination.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test/test_literature_validated.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test/test_remote_services.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test/test_structure_processing.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test/test_xml_writer.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test/test_salt_bridges.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test/__init__.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test/test_visualization.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test/test_basic_functions.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test/test_intra.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test/test_hydrogen_bonds.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test/test_pi_stacking.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/test/test_xml_parser.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test
creating /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/structure
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/structure/detection.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/structure
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/structure/__init__.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/structure
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/structure/preparation.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/structure
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/__init__.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip
creating /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/visualization
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/visualization/visualize.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/visualization
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/visualization/chimera.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/visualization
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/visualization/__init__.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/visualization
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/visualization/pymol.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/visualization
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/plipcmd.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip
creating /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/exchange
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/exchange/report.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/exchange
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/exchange/xml.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/exchange
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/exchange/json.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/exchange
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/exchange/__init__.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/exchange
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/exchange/webservices.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/exchange
creating /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/basic
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/basic/supplemental.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/basic
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/basic/logger.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/basic
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/basic/config.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/basic
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/basic/__init__.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/basic
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/basic/parallel.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/basic
copying /build/reproducible-path/plip-2.4.0+dfsg/.pybuild/cpython3_3.13_plip/build/plip/basic/remote.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/basic
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test/test_water_bridges.py to test_water_bridges.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test/test_command_line.py to test_command_line.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test/test_metal_coordination.py to test_metal_coordination.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test/test_literature_validated.py to test_literature_validated.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test/test_remote_services.py to test_remote_services.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test/test_structure_processing.py to test_structure_processing.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test/test_xml_writer.py to test_xml_writer.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test/test_salt_bridges.py to test_salt_bridges.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test/test_visualization.py to test_visualization.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test/test_basic_functions.py to test_basic_functions.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test/test_intra.py to test_intra.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test/test_hydrogen_bonds.py to test_hydrogen_bonds.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test/test_pi_stacking.py to test_pi_stacking.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/test/test_xml_parser.py to test_xml_parser.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/structure/detection.py to detection.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/structure/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/structure/preparation.py to preparation.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/visualization/visualize.py to visualize.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/visualization/chimera.py to chimera.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/visualization/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/visualization/pymol.py to pymol.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/plipcmd.py to plipcmd.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/exchange/report.py to report.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/exchange/xml.py to xml.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/exchange/json.py to json.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/exchange/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/exchange/webservices.py to webservices.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/basic/supplemental.py to supplemental.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/basic/logger.py to logger.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/basic/config.py to config.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/basic/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/basic/parallel.py to parallel.cpython-313.pyc
byte-compiling /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip/basic/remote.py to remote.cpython-313.pyc
running install_egg_info
running egg_info
writing plip.egg-info/PKG-INFO
writing dependency_links to plip.egg-info/dependency_links.txt
writing entry points to plip.egg-info/entry_points.txt
writing requirements to plip.egg-info/requires.txt
writing top-level names to plip.egg-info/top_level.txt
reading manifest file 'plip.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.txt'
writing manifest file 'plip.egg-info/SOURCES.txt'
Copying plip.egg-info to /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/plip-2.4.0.egg-info
Skipping SOURCES.txt
running install_scripts
copying build/scripts-3.13/plipcmd.py -> /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/bin
changing mode of /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/bin/plipcmd.py to 755
Installing plip script to /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/bin
rm -rvf /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/bin/plip
removed '/build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/bin/plip'
mv /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/bin/plipcmd.py \
           /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/bin/plipcmd
mkdir -p /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/share/man/man1
export PYTHONPATH=/build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/lib/python3.13/dist-packages/:\
/build/reproducible-path/plip-2.4.0+dfsg/plip/modules; \
    help2man --no-info --no-discard-stderr --version-string="2.4.0+dfsg-2"  --name='Protein-Ligand Interaction Profiler (PLIP)' \
    /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/bin/plipcmd > /build/reproducible-path/plip-2.4.0+dfsg/debian/plip/usr/share/man/man1/plipcmd.1
make[1]: Leaving directory '/build/reproducible-path/plip-2.4.0+dfsg'
   dh_installdocs -O--buildsystem=pybuild
	install -m0755 -d debian/plip/usr/share/doc/plip
	install -m0755 -d debian/plip/usr/share/doc/plip
	cp --reflink=auto -a ./DOCUMENTATION.md debian/plip/usr/share/doc/plip
	cp --reflink=auto -a ./README.md debian/plip/usr/share/doc/plip
	chmod -R u\+rw,go=rX debian/plip/usr/share/doc
	install -p -m0644 debian/copyright debian/plip/usr/share/doc/plip/copyright
   dh_installchangelogs -O--buildsystem=pybuild
	install -m0755 -d debian/plip/usr/share/doc/plip
	install -p -m0644 debian/.debhelper/generated/plip/dh_installchangelogs.dch.trimmed debian/plip/usr/share/doc/plip/changelog.Debian
	install -p -m0644 ./CHANGES.txt debian/plip/usr/share/doc/plip/changelog
   dh_installman -O--buildsystem=pybuild
	man-recode --to-code UTF-8 --suffix .dh-new debian/plip/usr/share/man/man1/plipcmd.1
	mv debian/plip/usr/share/man/man1/plipcmd.1.dh-new debian/plip/usr/share/man/man1/plipcmd.1
	chmod 0644 -- debian/plip/usr/share/man/man1/plipcmd.1
   dh_python3 -O--buildsystem=pybuild
D: dh_python3 dh_python3:180: version: 6.20250108
D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild']
D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild'])
D: dh_python3 dh_python3:183: supported Python versions: 3.12,3.13 (default=3.13)
D: dh_python3 debhelper:174: source=plip, binary packages=['plip']
D: dh_python3 dh_python3:205: processing package plip...
D: dh_python3 fs:50: moving files from debian/plip/usr/lib/python3.12/dist-packages to debian/plip/usr/lib/python3/dist-packages/
D: dh_python3 fs:50: moving files from debian/plip/usr/lib/python3.13/dist-packages to debian/plip/usr/lib/python3/dist-packages/
D: dh_python3 fs:338: package plip details = {'requires.txt': {'debian/plip/usr/lib/python3/dist-packages/plip-2.4.0.egg-info/requires.txt'}, 'egg-info': {'debian/plip/usr/lib/python3/dist-packages/plip-2.4.0.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()}
D: dh_python3 depends:103: generating dependencies for package plip
D: dh_python3 pydist:175: trying to find dependency for lxmlopenbabel (python=None)
D: dh_python3 pydist:291: invoking dpkg -S *python3/*/[Ll][Xx][Mm][Ll][Oo][Pp][Ee][Nn][Bb][Aa][Bb][Ee][Ll]-?*.*-info
D: dh_python3 pydist:313: dpkg -S did not find package for lxmlopenbabel: dpkg-query: no path found matching pattern *python3/*/[Ll][Xx][Mm][Ll][Oo][Pp][Ee][Nn][Bb][Aa][Bb][Ee][Ll]-?*.*-info

I: dh_python3 pydist:316: Cannot find package that provides lxmlopenbabel. Please add package that provides it to Build-Depends or add "lxmlopenbabel python3-lxmlopenbabel" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info.
D: dh_python3 pydist:175: trying to find dependency for numpy (python=None)
D: dh_python3 pydist:209: dependency: module seems to be installed
D: dh_python3 pydist:284: dependency: included in build-deps
D: dh_python3 depends:253: D={'python3:any', 'python3-numpy'}; R=[]; S=[]; E=[], B=[]; RT=[]
   dh_installsystemduser -O--buildsystem=pybuild
   dh_perl -O--buildsystem=pybuild
   dh_link -O--buildsystem=pybuild
   dh_strip_nondeterminism -O--buildsystem=pybuild
   dh_compress -O--buildsystem=pybuild
	cd debian/plip
	chmod a-x usr/share/doc/plip/DOCUMENTATION.md usr/share/doc/plip/README.md usr/share/doc/plip/changelog usr/share/doc/plip/changelog.Debian usr/share/man/man1/plipcmd.1
	gzip -9nf usr/share/doc/plip/DOCUMENTATION.md usr/share/doc/plip/README.md usr/share/doc/plip/changelog usr/share/doc/plip/changelog.Debian usr/share/man/man1/plipcmd.1
	cd '/build/reproducible-path/plip-2.4.0+dfsg'
   dh_fixperms -O--buildsystem=pybuild
	find debian/plip ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
	find debian/plip/usr/share/doc -type f -a -true -a ! -regex 'debian/plip/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/plip/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
	find debian/plip/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/plip -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/plip/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
	find debian/plip/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
   dh_missing -O--buildsystem=pybuild
   dh_installdeb -O--buildsystem=pybuild
	install -m0755 -d debian/plip/DEBIAN
	printf '#!/bin/sh\nset -e\n' > debian/plip/DEBIAN/postinst
	cat debian/plip.postinst.debhelper >> debian/plip/DEBIAN/postinst
	chmod 0755 -- debian/plip/DEBIAN/postinst
	printf '#!/bin/sh\nset -e\n' > debian/plip/DEBIAN/prerm
	cat debian/plip.prerm.debhelper >> debian/plip/DEBIAN/prerm
	chmod 0755 -- debian/plip/DEBIAN/prerm
   dh_gencontrol -O--buildsystem=pybuild
	install -m0755 -d debian/plip/DEBIAN
	echo misc:Depends= >> debian/plip.substvars
	echo misc:Pre-Depends= >> debian/plip.substvars
	dpkg-gencontrol -pplip -ldebian/changelog -Tdebian/plip.substvars -cdebian/control -Pdebian/plip
	chmod 0644 -- debian/plip/DEBIAN/control
   dh_md5sums -O--buildsystem=pybuild
	install -m0755 -d debian/plip/DEBIAN
	cd debian/plip >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
	chmod 0644 -- debian/plip/DEBIAN/md5sums
   dh_builddeb -O--buildsystem=pybuild
	dpkg-deb --root-owner-group --build debian/plip ..
dpkg-deb: building package 'plip' in '../plip_2.4.0+dfsg-2_all.deb'.
 dpkg-genbuildinfo --build=binary -O../plip_2.4.0+dfsg-2_amd64.buildinfo
 dpkg-genchanges --build=binary -O../plip_2.4.0+dfsg-2_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/618281 and its subdirectories
I: Current time: Fri Feb 27 13:46:35 -12 2026
I: pbuilder-time-stamp: 1772243195
Sat Jan 25 19:23:41 UTC 2025  I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net.
Sat Jan 25 19:23:41 UTC 2025  I: Preparing to do remote build '2' on ionos1-amd64.debian.net.
Sat Jan 25 19:25:02 UTC 2025  I: Deleting $TMPDIR on ionos1-amd64.debian.net.
Sat Jan 25 19:25:03 UTC 2025  I: plip_2.4.0+dfsg-2_amd64.changes:
Format: 1.8
Date: Fri, 24 Jan 2025 11:05:26 +0100
Source: plip
Binary: plip
Architecture: all
Version: 2.4.0+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Alexandre Mestiashvili <mestia@debian.org>
Description:
 plip       - fully automated protein-ligand interaction profiler
Changes:
 plip (2.4.0+dfsg-2) unstable; urgency=medium
 .
   * Update d/tests/control, add python3-lxml as a dependency
   * Update autopkgtest invocation
Checksums-Sha1:
 97f4b95d747461dbcb553206062937a64416d71c 86036 plip_2.4.0+dfsg-2_all.deb
 1001b8965dce189ac24137fad67fab864c2e38b8 7085 plip_2.4.0+dfsg-2_amd64.buildinfo
Checksums-Sha256:
 2329501d1c6511635bd8065ad19c455498d9139980f1cfa34fdcb18eec3545a7 86036 plip_2.4.0+dfsg-2_all.deb
 fa1d0943e64f149ea61d78183b0f8330c940ec8ac4117b2839b1bae23aa32e49 7085 plip_2.4.0+dfsg-2_amd64.buildinfo
Files:
 c69d40f8af4488358a2a4957aa9760c0 86036 python optional plip_2.4.0+dfsg-2_all.deb
 b234cb6fc7df4765d65aa89909ec0f56 7085 python optional plip_2.4.0+dfsg-2_amd64.buildinfo
Sat Jan 25 19:25:04 UTC 2025  I: diffoscope 285 will be used to compare the two builds:
Running as unit: rb-diffoscope-amd64_18-28808.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.LXi2EBde/plip_2.4.0+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.LXi2EBde/plip_2.4.0+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.LXi2EBde/plip_2.4.0+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.LXi2EBde/b1/plip_2.4.0+dfsg-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.LXi2EBde/b2/plip_2.4.0+dfsg-2_amd64.changes

## command (total time: 0.000s)
       0.000s      1 call     cmp (internal)

## has_same_content_as (total time: 0.000s)
       0.000s      1 call     abc.DotChangesFile

## main (total time: 0.311s)
       0.311s      2 calls    outputs
       0.000s      1 call     cleanup

## recognizes (total time: 0.014s)
       0.014s     12 calls    diffoscope.comparators.binary.FilesystemFile

## specialize (total time: 0.000s)
       0.000s      1 call     specialize
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 605ms
CPU time consumed: 605ms
Sat Jan 25 19:27:47 UTC 2025  I: diffoscope 285 found no differences in the changes files, and a .buildinfo file also exists.
Sat Jan 25 19:27:47 UTC 2025  I: plip from unstable built successfully and reproducibly on amd64.
Sat Jan 25 19:27:49 UTC 2025  I: Submitting .buildinfo files to external archives:
Sat Jan 25 19:27:49 UTC 2025  I: Submitting 8.0K	b1/plip_2.4.0+dfsg-2_amd64.buildinfo.asc
Sat Jan 25 19:27:53 UTC 2025  I: Submitting 8.0K	b2/plip_2.4.0+dfsg-2_amd64.buildinfo.asc
Sat Jan 25 19:28:05 UTC 2025  I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Sat Jan 25 19:28:05 UTC 2025  I: Done submitting .buildinfo files.
Sat Jan 25 19:28:05 UTC 2025  I: Removing signed plip_2.4.0+dfsg-2_amd64.buildinfo.asc files:
removed './b1/plip_2.4.0+dfsg-2_amd64.buildinfo.asc'
removed './b2/plip_2.4.0+dfsg-2_amd64.buildinfo.asc'