Sun Jan 5 20:48:34 UTC 2025 I: starting to build pbdagcon/unstable/amd64 on jenkins on '2025-01-05 20:48' Sun Jan 5 20:48:34 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_1/26898/console.log Sun Jan 5 20:48:34 UTC 2025 I: Downloading source for unstable/pbdagcon=0.3+git20180411.c14c422+dfsg-9 --2025-01-05 20:48:34-- http://deb.debian.org/debian/pool/main/p/pbdagcon/pbdagcon_0.3%2bgit20180411.c14c422%2bdfsg-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2538 (2.5K) [text/prs.lines.tag] Saving to: ‘pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc’ 0K .. 100% 156M=0s 2025-01-05 20:48:34 (156 MB/s) - ‘pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc’ saved [2538/2538] Sun Jan 5 20:48:34 UTC 2025 I: pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pbdagcon Binary: pbdagcon Architecture: any Version: 0.3+git20180411.c14c422+dfsg-9 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/PacificBiosciences/pbdagcon Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/pbdagcon Vcs-Git: https://salsa.debian.org/med-team/pbdagcon.git Testsuite: autopkgtest Testsuite-Triggers: blasr, daligner, dazzdb Build-Depends: debhelper-compat (= 13), python3:any, zlib1g-dev, libhdf5-dev, libboost-dev, libtclap-dev, libpbseq-dev (>= 5.3.5+dfsg-4~), libpbbam-dev, libpbdata-dev (>= 5.3.5+dfsg-4~), libpbcopper-dev, libpbihdf-dev (>= 5.3.5+dfsg-4~), googletest Package-List: pbdagcon deb science optional arch=any Checksums-Sha1: 12afc3055828fc218ccab4e287d9e665ce6dec3a 79760 pbdagcon_0.3+git20180411.c14c422+dfsg.orig.tar.xz 76e14fa844654cec6b0633b9af5faba60e76a28a 58140 pbdagcon_0.3+git20180411.c14c422+dfsg-9.debian.tar.xz Checksums-Sha256: f554fedfaa673cb22bebb28d941139e72a1a9284039929c92b16d9c58fc1f8b9 79760 pbdagcon_0.3+git20180411.c14c422+dfsg.orig.tar.xz 5a6bce1eb4496e137670d4472fff3947cb8ffde5f08f0c50428df8b0065186bb 58140 pbdagcon_0.3+git20180411.c14c422+dfsg-9.debian.tar.xz Files: 675f3ae464f2315b689464c5ce3dd1e7 79760 pbdagcon_0.3+git20180411.c14c422+dfsg.orig.tar.xz 2c76bcc60a7f4eb12cd065a061d763d1 58140 pbdagcon_0.3+git20180411.c14c422+dfsg-9.debian.tar.xz Dgit: 23f940649935a208178080164ffcd3e6d566fe6f debian archive/debian/0.3+git20180411.c14c422+dfsg-9 https://git.dgit.debian.org/pbdagcon -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmbx0AYUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrXpRAAxIZk9dyCi8pmHXAYy83he4i4hV8t O/Czn0pIC8V3kcOuwjDscUogpZlgkvzuxgB7jq8EeWUAKmjfz2/dclkKIDnaDvL9 gB01K+2N+DWCP4jc0Q5ywrv+q8Y2qqzG2MzwemTAW8jruP2kPV+85zx5CIq/pGg4 2/H6TMvIJwKuKCnl34ZUttdmJtV+5Y9CJRfU0qPDwfPpLEN212WmgEqb62/6EOe9 3o32ZOe3HDSjeaG4JzVXHg7PWbRjOmL2qJlI12lxTZEorPpPqx9lLVTSE4RCrppW Cyc5KrAVcQRxr04q3rs0cQJnMYfIbCSdLPP0ZQVWUUPb1SBuMK6599OqTa4LDDjo A1kac3qPgtpWbtGUjYPO+ey8v4zUTz7RernbBfDkVgVhB94UYp4RMYeZfuRMt1Ce PgufOnbUHzEjCQtMjnF88jxg/v7hqi7FkOq3azea8wziweUhv022mzE8og/Bk0Ft Dj/W4WRKv/akC9WaVCB3xyjwKBOYavrFd9uS4DIES+gYE8WYXzgXw47uT3em8UkN dgQYhiHvQy6KqaOpMAr6dqgTATJ6n1POSe0H0+S0RVik33aFplrt7JLJNvVJGdHC 6k8xo48siTx7nxfHdhbXAfJnlMnWMjnILosGQ+fQJ0H7R+3AZd1qK2PgUEfDvOsS fX8/o9mrav3a3EM= =8Mzb -----END PGP SIGNATURE----- Sun Jan 5 20:48:34 UTC 2025 I: Checking whether the package is not for us Sun Jan 5 20:48:34 UTC 2025 I: Starting 1st build on remote node ionos1-amd64.debian.net. Sun Jan 5 20:48:34 UTC 2025 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Sun Jan 5 20:55:06 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jan 5 08:48:38 -12 2025 I: pbuilder-time-stamp: 1736110118 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc] I: copying [./pbdagcon_0.3+git20180411.c14c422+dfsg.orig.tar.xz] I: copying [./pbdagcon_0.3+git20180411.c14c422+dfsg-9.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc: unsupported subcommand dpkg-source: info: extracting pbdagcon in pbdagcon-0.3+git20180411.c14c422+dfsg dpkg-source: info: unpacking pbdagcon_0.3+git20180411.c14c422+dfsg.orig.tar.xz dpkg-source: info: unpacking pbdagcon_0.3+git20180411.c14c422+dfsg-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying compiler-flags.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying libdata_libpbihdf.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/199336/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='52a390a730044ed9b0ebc1f8de8fb18d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='199336' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.i8FNkiYY/pbuilderrc_BEau --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.i8FNkiYY/b1 --logfile b1/build.log pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/199336/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3:any, zlib1g-dev, libhdf5-dev, libboost-dev, libtclap-dev, libpbseq-dev (>= 5.3.5+dfsg-4~), libpbbam-dev, libpbdata-dev (>= 5.3.5+dfsg-4~), libpbcopper-dev, libpbihdf-dev (>= 5.3.5+dfsg-4~), googletest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19848 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3:any. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libtclap-dev; however: Package libtclap-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbseq-dev (>= 5.3.5+dfsg-4~); however: Package libpbseq-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbbam-dev; however: Package libpbbam-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbdata-dev (>= 5.3.5+dfsg-4~); however: Package libpbdata-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbcopper-dev; however: Package libpbcopper-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbihdf-dev (>= 5.3.5+dfsg-4~); however: Package libpbihdf-dev is not installed. pbuilder-satisfydepends-dummy depends on googletest; however: Package googletest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libblasr-dev{a} libblasr5.3.5{a} libboost-dev{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libnsl2{a} libp11-kit-dev{a} libp11-kit0{a} libpbbam-dev{a} libpbbam2.4.0{a} libpbcopper-dev{a} libpbcopper2.3.0{a} libpbdata-dev{a} libpbihdf-dev{a} libpbseq-dev{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtclap-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 139 newly installed, 0 to remove and 0 not upgraded. Need to get 73.3 MB of archives. After unpacking 410 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.8-3 [817 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.8-3 [2162 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.8-1 [26.9 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-4 [256 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 13 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.8-3 [1969 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.8-3 [677 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.8-1 [9788 B] Get: 23 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.8-1 [27.9 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-3 [200 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-13 [91.9 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-3 [723 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.2-1 [55.7 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.23 [90.6 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 46 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-3 [1600 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.23 [919 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 googletest all 1.15.2-1 [514 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 hdf5-helpers amd64 1.14.5+repack-2 [26.5 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.21.3-3 [59.5 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.21.3-3 [41.7 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.21.3-3 [42.0 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.21.3-3 [53.5 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.21.3-3 [126 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get: 64 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.3-1+b1 [21.5 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.19.0-3+b3 [49.5 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.8-2 [1454 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.19+dfsg-1 [187 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.11.1-1 [351 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libhdf5-310 amd64 1.14.5+repack-2 [1341 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libhdf5-cpp-310 amd64 1.14.5+repack-2 [133 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.11.1-1 [360 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libhtscodecs2 amd64 1.6.1-1 [95.6 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libhts3t64 amd64 1.20+ds-2 [455 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libpbcopper2.3.0 amd64 2.3.0+dfsg-2+b1 [735 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libpbbam2.4.0 amd64 2.4.0+dfsg-1+b4 [835 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libblasr5.3.5 amd64 5.3.5+dfsg-9+b1 [1122 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libpbcopper-dev amd64 2.3.0+dfsg-2+b1 [1072 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libpbdata-dev amd64 5.3.5+dfsg-9+b1 [41.0 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-12 [836 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libhdf5-fortran-310 amd64 1.14.5+repack-2 [112 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-2 [69.2 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-2 [43.8 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-2 [24.3 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3+b1 [292 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-3+b1 [72.2 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b6 [316 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.22.0-1 [598 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.8-2 [449 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.8-2 [449 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.7-2+b1 [123 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.19.0-3+b3 [98.9 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10-1+b1 [1317 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.8-2 [1391 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.21.3-3 [15.7 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.5.19+dfsg-1 [303 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libnghttp3-dev amd64 1.6.0-2 [88.5 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.9.1-1 [23.1 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libngtcp2-dev amd64 1.9.1-1 [167 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.3.2-2 [2742 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [365 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libcurl4-gnutls-dev amd64 8.11.1-1 [474 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libhdf5-dev amd64 1.14.5+repack-2 [3164 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.22-1 [55.8 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.6.3-1+b1 [316 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libhts-dev amd64 1.20+ds-2 [1701 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libpbbam-dev amd64 2.4.0+dfsg-1+b4 [88.4 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libblasr-dev amd64 5.3.5+dfsg-9+b1 [2126 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-4 [10.6 MB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 137 http://deb.debian.org/debian unstable/main amd64 libpbihdf-dev amd64 5.3.5+dfsg-9+b1 [47.5 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libpbseq-dev amd64 5.3.5+dfsg-9+b1 [5216 B] Get: 139 http://deb.debian.org/debian unstable/main amd64 libtclap-dev amd64 1.2.5-1+b1 [3360 kB] Fetched 73.3 MB in 2s (37.8 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19848 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.8-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-3_amd64.deb ... Unpacking python3.12-minimal (3.12.8-3) ... Setting up libpython3.12-minimal:amd64 (3.12.8-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20168 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.8-1_amd64.deb ... Unpacking python3-minimal (3.12.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../04-libffi8_3.4.6-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.6-1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../05-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../06-libcom-err2_1.47.2-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../07-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../08-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../09-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../10-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../11-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../12-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../13-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../14-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../15-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../16-libpython3.12-stdlib_3.12.8-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.8-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../17-python3.12_3.12.8-3_amd64.deb ... Unpacking python3.12 (3.12.8-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../18-libpython3-stdlib_3.12.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.8-1) ... Setting up python3-minimal (3.12.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21236 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.8-1_amd64.deb ... Unpacking python3 (3.12.8-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../003-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.22.5-3_amd64.deb ... Unpacking gettext-base (0.22.5-3) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../006-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. 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Setting up libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-3+b1) ... Setting up comerr-dev:amd64 (2.1-1.47.2-1) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up libssl-dev:amd64 (3.3.2-2) ... Setting up autopoint (0.22.5-3) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up libgfortran5:amd64 (14.2.0-12) ... Setting up autoconf (2.72-3) ... Setting up libtclap-dev (1.2.5-1+b1) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up libnghttp3-dev:amd64 (1.6.0-2) ... Setting up liblzma-dev:amd64 (5.6.3-1+b1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libtasn1-6:amd64 (4.19.0-3+b3) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:amd64 (1.9.1-1) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libboost-dev:amd64 (1.83.0.2+b2) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libtasn1-6-dev:amd64 (4.19.0-3+b3) ... Setting up libdeflate-dev:amd64 (1.22-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b6) ... Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up libpbcopper2.3.0:amd64 (2.3.0+dfsg-2+b1) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-3) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-3) ... Setting up nettle-dev:amd64 (3.10-1+b1) ... Setting up libtool (2.4.7-8) ... Setting up libaec-dev:amd64 (1.1.3-1+b1) ... Setting up libjpeg-dev:amd64 (1:2.1.5-3+b1) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up libngtcp2-dev:amd64 (1.9.1-1) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libpbcopper-dev:amd64 (2.3.0+dfsg-2+b1) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libidn2-dev:amd64 (2.3.7-2+b1) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-7) ... Setting up libp11-kit-dev:amd64 (0.25.5-3) ... Setting up libgnutls30t64:amd64 (3.8.8-2) ... Setting up libgnutls-openssl27t64:amd64 (3.8.8-2) ... Setting up libnghttp2-dev:amd64 (1.64.0-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libpbdata-dev:amd64 (5.3.5+dfsg-9+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libldap-2.5-0:amd64 (2.5.19+dfsg-1) ... Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up libgnutls-dane0t64:amd64 (3.8.8-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libgssrpc4t64:amd64 (1.21.3-3) ... Setting up libldap-dev:amd64 (2.5.19+dfsg-1) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-3) ... Setting up libgnutls28-dev:amd64 (3.8.8-2) ... Setting up libpython3.12-stdlib:amd64 (3.12.8-3) ... Setting up libcurl4t64:amd64 (8.11.1-1) ... Setting up libkdb5-10t64:amd64 (1.21.3-3) ... Setting up python3.12 (3.12.8-3) ... Setting up libcurl3t64-gnutls:amd64 (8.11.1-1) ... Setting up debhelper (13.23) ... Setting up libngtcp2-crypto-gnutls-dev:amd64 (1.9.1-1) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libhdf5-310:amd64 (1.14.5+repack-2) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-3) ... Setting up libhts3t64:amd64 (1.20+ds-2) ... Setting up libhdf5-fortran-310:amd64 (1.14.5+repack-2) ... Setting up libpython3-stdlib:amd64 (3.12.8-1) ... Setting up krb5-multidev:amd64 (1.21.3-3) ... Setting up libhdf5-cpp-310:amd64 (1.14.5+repack-2) ... Setting up libhdf5-hl-310:amd64 (1.14.5+repack-2) ... Setting up libpbbam2.4.0:amd64 (2.4.0+dfsg-1+b4) ... Setting up python3 (3.12.8-1) ... Setting up libblasr5.3.5:amd64 (5.3.5+dfsg-9+b1) ... Setting up libkrb5-dev:amd64 (1.21.3-3) ... Setting up libhdf5-hl-cpp-310:amd64 (1.14.5+repack-2) ... Setting up libhdf5-hl-fortran-310:amd64 (1.14.5+repack-2) ... Setting up libcurl4-gnutls-dev:amd64 (8.11.1-1) ... Setting up libhdf5-dev (1.14.5+repack-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libpbihdf-dev:amd64 (5.3.5+dfsg-9+b1) ... Setting up libhts-dev:amd64 (1.20+ds-2) ... Setting up libpbbam-dev:amd64 (2.4.0+dfsg-1+b4) ... Setting up libblasr-dev:amd64 (5.3.5+dfsg-9+b1) ... Setting up libpbseq-dev:amd64 (5.3.5+dfsg-9+b1) ... Processing triggers for libc-bin (2.40-5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pbdagcon_0.3+git20180411.c14c422+dfsg-9_source.changes dpkg-buildpackage: info: source package pbdagcon dpkg-buildpackage: info: source version 0.3+git20180411.c14c422+dfsg-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j20 clean make[1]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' make -C src/cpp clean make[2]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' rm -f *.d rm -f *.o rm -f pbdagcon rm -f dazcon make[2]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' make -C test/cpp clean make[2]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/test/cpp' rm -f .//*.o rm -f *.o rm -f test_* make[2]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/test/cpp' make[1]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' ./configure.py --shared uname -s uname='Linux' writing to '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/defines.mk' """ DALIGNER_INCLUDE ?= ${DALIGNER_SRC} DALIGNER_SRC ?= /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include DAZZ_DB_INCLUDE ?= ${DAZZ_DB_SRC} DAZZ_DB_SRC ?= /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include GTEST_INCLUDE ?= /usr/src/googletest/googletest/include GTEST_SRC ?= /usr/src/googletest/googletest/src HDF5_LIB ?= /usr/lib/x86_64-linux-gnu/hdf5/serial HDF5_LIBFLAGS ?= -lhdf5_cpp -lhdf5 HTSLIB_LIBS ?= -lhts LIBBLASR_INCLUDE ?= /usr/include/pbseq/alignment LIBBLASR_LIBFLAGS ?= -lblasr LIBPBDATA_INCLUDE ?= /usr/include/pbseq/pbdata LIBPBIHDF_INCLUDE ?= /usr/include/pbseq/hdf PBBAM_INCLUDE ?= /usr/include/pbseq PBBAM_LIBFLAGS ?= -lpbbam PTHREAD_LIBFLAGS ?= -lpthread ZLIB_LIBFLAGS ?= -lz LDLIBS+=-lrt """ make[1]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' dh_auto_build make -j20 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' make -C src/cpp make[2]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o Alignment.o Alignment.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o AlnGraphBoost.o AlnGraphBoost.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o BlasrM5AlnProvider.o BlasrM5AlnProvider.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o main.o main.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o SimpleAligner.o SimpleAligner.cpp cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o DB.o /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o QV.o /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/QV.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o align.o /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include/align.c g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o DazAlnProvider.o DazAlnProvider.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o dazcon.o dazcon.cpp /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c: In function 'Open_QVs': /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c:2415:16: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 2415 | (void) fscanf(istub,DB_NFILE,&nfiles); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c:2419:20: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 2419 | { (void) fscanf(istub,DB_FDATA,&last,fname,prolog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c:2424:20: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 2424 | { (void) fscanf(istub,DB_FDATA,&last,fname,prolog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o dazcon Alignment.o AlnGraphBoost.o DB.o QV.o align.o DazAlnProvider.o dazcon.o -Wl,-z,relro -L /usr/lib/x86_64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread g++ -o pbdagcon Alignment.o AlnGraphBoost.o BlasrM5AlnProvider.o main.o SimpleAligner.o -Wl,-z,relro -L /usr/lib/x86_64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread make[2]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' make[1]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' dh_auto_test make -j20 check make[1]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' make -C src/cpp make[2]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' make -C test/cpp make[2]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/test/cpp' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -g -Wall -Wextra -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -isystem /usr/src/googletest/googletest/include -isystem /usr/src/googletest/googletest/src/.. -c -o gtest-all.o /usr/src/googletest/googletest/src/gtest-all.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -g -Wall -Wextra -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -isystem /usr/src/googletest/googletest/include -isystem /usr/src/googletest/googletest/src/.. -c -o gtest_main.o /usr/src/googletest/googletest/src/gtest_main.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o AlnGraphBoost.o .//../../src/cpp/AlnGraphBoost.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o Alignment.o .//../../src/cpp/Alignment.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o SimpleAligner.o .//../../src/cpp/SimpleAligner.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o AlnGraphBoostTest.o AlnGraphBoostTest.cpp mkdir xml g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o AlignmentTest.o AlignmentTest.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o SimpleAlignerTest.o SimpleAlignerTest.cpp cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o DB.o /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o QV.o /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/QV.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o align.o /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include/align.c g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o DazAlnProvider.o .//../../src/cpp/DazAlnProvider.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o TargetHitTest.o TargetHitTest.cpp /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c: In function 'Open_QVs': /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c:2415:16: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 2415 | (void) fscanf(istub,DB_NFILE,&nfiles); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c:2419:20: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 2419 | { (void) fscanf(istub,DB_FDATA,&last,fname,prolog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c:2424:20: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 2424 | { (void) fscanf(istub,DB_FDATA,&last,fname,prolog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o test-alngraph gtest-all.o gtest_main.o AlnGraphBoost.o Alignment.o SimpleAligner.o AlnGraphBoostTest.o -Wl,-z,relro -L /usr/lib/x86_64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread g++ -o test-alignment gtest-all.o gtest_main.o AlnGraphBoost.o Alignment.o SimpleAligner.o AlignmentTest.o -Wl,-z,relro -L /usr/lib/x86_64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread g++ -o test-simple_aligner gtest-all.o gtest_main.o AlnGraphBoost.o Alignment.o SimpleAligner.o SimpleAlignerTest.o -Wl,-z,relro -L /usr/lib/x86_64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread g++ -o test-target_hit gtest-all.o gtest_main.o DB.o QV.o align.o Alignment.o DazAlnProvider.o TargetHitTest.o -Wl,-z,relro -L /usr/lib/x86_64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread LD_LIBRARY_PATH=::::/usr/lib/x86_64-linux-gnu/hdf5/serial::: PBDAGCON_TEST_DATA_DIR=./ ./test-target_hit --gtest_output=xml:xml/test-target_hit.xml Running main() from /usr/src/googletest/googletest/src/gtest_main.cc [==========] Running 3 tests from 1 test suite. [----------] Global test environment set-up. [----------] 3 tests from TargetHitTest [ RUN ] TargetHitTest.single_overlap_perfect [ OK ] TargetHitTest.single_overlap_perfect (0 ms) [ RUN ] TargetHitTest.single_overlap_inaccurate [ OK ] TargetHitTest.single_overlap_inaccurate (0 ms) [ RUN ] TargetHitTest.multi_overlap_inaccurate [ OK ] TargetHitTest.multi_overlap_inaccurate (0 ms) [----------] 3 tests from TargetHitTest (0 ms total) [----------] Global test environment tear-down [==========] 3 tests from 1 test suite ran. (0 ms total) [ PASSED ] 3 tests. LD_LIBRARY_PATH=::::/usr/lib/x86_64-linux-gnu/hdf5/serial::: PBDAGCON_TEST_DATA_DIR=./ ./test-alignment --gtest_output=xml:xml/test-alignment.xml LD_LIBRARY_PATH=::::/usr/lib/x86_64-linux-gnu/hdf5/serial::: PBDAGCON_TEST_DATA_DIR=./ ./test-alngraph --gtest_output=xml:xml/test-alngraph.xml Running main() from /usr/src/googletest/googletest/src/gtest_main.cc [==========] Running 4 tests from 1 test suite. [----------] Global test environment set-up. [----------] 4 tests from Alignment [ RUN ] Alignment.Normalize [ OK ] Alignment.Normalize (0 ms) [ RUN ] Alignment.ParseBasic [ OK ] Alignment.ParseBasic (0 ms) [ RUN ] Alignment.ParseQuery [ OK ] Alignment.ParseQuery (0 ms) [ RUN ] Alignment.Trim [ OK ] Alignment.Trim (0 ms) [----------] 4 tests from Alignment (0 ms total) [----------] Global test environment tear-down [==========] 4 tests from 1 test suite ran. (0 ms total) [ PASSED ] 4 tests. Running main() from /usr/src/googletest/googletest/src/gtest_main.cc [==========] Running 2 tests from 1 test suite. [----------] Global test environment set-up. [----------] 2 tests from AlnGraphBoostTest [ RUN ] AlnGraphBoostTest.RawConsensus [ OK ] AlnGraphBoostTest.RawConsensus (0 ms) [ RUN ] AlnGraphBoostTest.DanglingNodes [ OK ] AlnGraphBoostTest.DanglingNodes (0 ms) [----------] 2 tests from AlnGraphBoostTest (0 ms total) [----------] Global test environment tear-down [==========] 2 tests from 1 test suite ran. (0 ms total) [ PASSED ] 2 tests. LD_LIBRARY_PATH=::::/usr/lib/x86_64-linux-gnu/hdf5/serial::: PBDAGCON_TEST_DATA_DIR=./ ./test-simple_aligner --gtest_output=xml:xml/test-simple_aligner.xml Running main() from /usr/src/googletest/googletest/src/gtest_main.cc [==========] Running 1 test from 1 test suite. [----------] Global test environment set-up. [----------] 1 test from SimpleAligner [ RUN ] SimpleAligner.align [ OK ] SimpleAligner.align (0 ms) [----------] 1 test from SimpleAligner (0 ms total) [----------] Global test environment tear-down [==========] 1 test from 1 test suite ran. (0 ms total) [ PASSED ] 1 test. make[2]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/test/cpp' make[1]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/pbdagcon/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'pbdagcon' in '../pbdagcon_0.3+git20180411.c14c422+dfsg-9_amd64.deb'. dpkg-deb: building package 'pbdagcon-dbgsym' in '../pbdagcon-dbgsym_0.3+git20180411.c14c422+dfsg-9_amd64.deb'. dpkg-genbuildinfo --build=binary -O../pbdagcon_0.3+git20180411.c14c422+dfsg-9_amd64.buildinfo dpkg-genchanges --build=binary -O../pbdagcon_0.3+git20180411.c14c422+dfsg-9_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/199336 and its subdirectories I: Current time: Sun Jan 5 08:55:05 -12 2025 I: pbuilder-time-stamp: 1736110505 Sun Jan 5 20:55:06 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Sun Jan 5 20:55:06 UTC 2025 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Sun Jan 5 20:56:52 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Sun Jan 5 20:56:52 UTC 2025 I: pbdagcon_0.3+git20180411.c14c422+dfsg-9_amd64.changes: Format: 1.8 Date: Mon, 23 Sep 2024 21:36:37 +0200 Source: pbdagcon Binary: pbdagcon pbdagcon-dbgsym Architecture: amd64 Version: 0.3+git20180411.c14c422+dfsg-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: pbdagcon - sequence consensus using directed acyclic graphs Closes: 1082216 Changes: pbdagcon (0.3+git20180411.c14c422+dfsg-9) unstable; urgency=medium . * Team upload. . [ Paul Mars ] * Adapt target.dam checksum following dazzcon update (Closes: #1082216) . [ Étienne Mollier ] * d/control: declare compliance to standards version 4.7.0. Checksums-Sha1: 29c116704052a36980a3981c8bac835a48fea056 5629684 pbdagcon-dbgsym_0.3+git20180411.c14c422+dfsg-9_amd64.deb 3ebfc5b8685324763bf545c57d71a64c50b4be34 8684 pbdagcon_0.3+git20180411.c14c422+dfsg-9_amd64.buildinfo 34f4c52f40feaa9a0dd5fc5dc52b5ca0dc20f8f8 364528 pbdagcon_0.3+git20180411.c14c422+dfsg-9_amd64.deb Checksums-Sha256: 1759cb6c81bcd529526678471d98dda55a908a2f1cf70802fb6a8f5ae13010f0 5629684 pbdagcon-dbgsym_0.3+git20180411.c14c422+dfsg-9_amd64.deb 1d7ee67495897034b27c77bd721a82e59c24529aab3cfc35060b623406f2653e 8684 pbdagcon_0.3+git20180411.c14c422+dfsg-9_amd64.buildinfo 3775060e907bf20d4ddd019f0af89f244e91110603c1bf217056a1b2d40b3266 364528 pbdagcon_0.3+git20180411.c14c422+dfsg-9_amd64.deb Files: 974f4bb7ebbc422fa22ebcde7e4fe10f 5629684 debug optional pbdagcon-dbgsym_0.3+git20180411.c14c422+dfsg-9_amd64.deb ee42139bcb6a5b9ae37d95b3dce83066 8684 science optional pbdagcon_0.3+git20180411.c14c422+dfsg-9_amd64.buildinfo 6e7016cc3b96461e2d970ec1089bee05 364528 science optional pbdagcon_0.3+git20180411.c14c422+dfsg-9_amd64.deb Sun Jan 5 20:56:53 UTC 2025 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_1-26898.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.i8FNkiYY/pbdagcon_0.3+git20180411.c14c422+dfsg-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.i8FNkiYY/pbdagcon_0.3+git20180411.c14c422+dfsg-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.i8FNkiYY/pbdagcon_0.3+git20180411.c14c422+dfsg-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.i8FNkiYY/b1/pbdagcon_0.3+git20180411.c14c422+dfsg-9_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.i8FNkiYY/b2/pbdagcon_0.3+git20180411.c14c422+dfsg-9_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.437s) 0.437s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.085s) 0.085s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 777ms CPU time consumed: 778ms Sun Jan 5 21:07:31 UTC 2025 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Sun Jan 5 21:07:31 UTC 2025 I: pbdagcon from unstable built successfully and reproducibly on amd64. Sun Jan 5 21:07:35 UTC 2025 I: Submitting .buildinfo files to external archives: Sun Jan 5 21:07:35 UTC 2025 I: Submitting 12K b1/pbdagcon_0.3+git20180411.c14c422+dfsg-9_amd64.buildinfo.asc Sun Jan 5 21:07:50 UTC 2025 I: Submitting 12K b2/pbdagcon_0.3+git20180411.c14c422+dfsg-9_amd64.buildinfo.asc Sun Jan 5 21:08:10 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Jan 5 21:08:10 UTC 2025 I: Done submitting .buildinfo files. Sun Jan 5 21:08:10 UTC 2025 I: Removing signed pbdagcon_0.3+git20180411.c14c422+dfsg-9_amd64.buildinfo.asc files: removed './b1/pbdagcon_0.3+git20180411.c14c422+dfsg-9_amd64.buildinfo.asc' removed './b2/pbdagcon_0.3+git20180411.c14c422+dfsg-9_amd64.buildinfo.asc'