Wed Oct 23 00:01:09 UTC 2024 I: starting to build optimir/unstable/amd64 on jenkins on '2024-10-23 00:00' Wed Oct 23 00:01:09 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_5/22327/console.log Wed Oct 23 00:01:09 UTC 2024 I: Downloading source for unstable/optimir=1.2-2 --2024-10-23 00:01:10-- http://deb.debian.org/debian/pool/main/o/optimir/optimir_1.2-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1994 (1.9K) [text/prs.lines.tag] Saving to: ‘optimir_1.2-2.dsc’ 0K . 100% 275M=0s 2024-10-23 00:01:10 (275 MB/s) - ‘optimir_1.2-2.dsc’ saved [1994/1994] Wed Oct 23 00:01:10 UTC 2024 I: optimir_1.2-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: optimir Binary: optimir Architecture: all Version: 1.2-2 Maintainer: Debian Med Packaging Team Uploaders: Dylan Aïssi Homepage: https://github.com/FlorianThibord/OptimiR Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/optimir Vcs-Git: https://salsa.debian.org/med-team/optimir.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools Package-List: optimir deb science optional arch=all Checksums-Sha1: f5b0b31d4572ef7ae13df5720e4717251a7f7f16 1748155 optimir_1.2.orig.tar.gz 0ca869808e1c4fc01d75456be949ddf410782569 3748 optimir_1.2-2.debian.tar.xz Checksums-Sha256: de67c81c03ed3cb9faaba93388867faa8de57dfcada06544e6e762785545cb9b 1748155 optimir_1.2.orig.tar.gz 1475bcbeee84319fb621ad06ca18dee9dc51f35265dcd240c175bc0be368d499 3748 optimir_1.2-2.debian.tar.xz Files: 617473e1a1e467b85451c57c1875a86a 1748155 optimir_1.2.orig.tar.gz c4cca2c92f098a01d48fa36a5c93e9e5 3748 optimir_1.2-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmcXpkIRHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBq/WxAAjn+8wkRmK62tMuCpr7AqeLS3exTzSEBW hWzjMUHzCF7FC52aVw/rvuykvUA4WbWIEdyXBJecThQwjWSu5A97X0ODngbweHUT UcywIOGCEW7PIA6490YFdeCCcuRwbXvlPFwo6Hl+zqr3yM872uEyatIo8JYkY7Y1 G7tcQCBw+1PuB8tPY5+jy5MPN/BDLSEUer/4AiLzQEK+r7nJNZudtv9LLV/1t6zG P5duhwHro9lehoLakd38SfFPxON7fzDDqfettGwwPETufvkkt6CJU43sAYZwCtuf /YKiVL3FGczv0IiIwSPZWFLLVJPToZN2afnHHnEVa4i9xVUHNQ9PDweNrIIskKEN s0Nz9Qz+cXWUrXvBX9O0CMpePTYc9hArL9rELa+yhDa9VcdfDMItLCtpgth4ztCo qnt/8oZzJyhh11WLxSVjN6BX2MTjfzf+VBYD2HrVGeeg72w3pLoPFb9+cGAc06Qc C9Lb8A0eeaYNRNR95v+UG5lwFLbRTFbNjCaiOttWTvJ+BPMU4xAXIbJ5mIDotxuJ WEk9LGQEksFlNkC2jg0/NuYk1lBotwJbbR5AaveEL3yBt2yw7moyKNUunfjB8PZG HDLXZo3t0di+Bu3AThBohPWh9p1fWcmb2+nwqolXFKFKwyw21e0F3YYHLJON2y4e eK+47XGG94c= =iV8k -----END PGP SIGNATURE----- Wed Oct 23 00:01:10 UTC 2024 I: Checking whether the package is not for us Wed Oct 23 00:01:10 UTC 2024 I: Starting 1st build on remote node ionos11-amd64.debian.net. Wed Oct 23 00:01:10 UTC 2024 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Wed Oct 23 00:02:39 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Oct 22 12:01:12 -12 2024 I: pbuilder-time-stamp: 1729641672 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [optimir_1.2-2.dsc] I: copying [./optimir_1.2.orig.tar.gz] I: copying [./optimir_1.2-2.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Oct 22 13:18:58 2024 gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A gpgv: issuer "tchet@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./optimir_1.2-2.dsc: no acceptable signature found dpkg-source: info: extracting optimir in optimir-1.2 dpkg-source: info: unpacking optimir_1.2.orig.tar.gz dpkg-source: info: unpacking optimir_1.2-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying SyntaxWarning.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2855931/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='e10020a7204b478f81f98e4fe743b51f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2855931' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.jwb8wAkE/pbuilderrc_dInk --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.jwb8wAkE/b1 --logfile b1/build.log optimir_1.2-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2855931/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19946 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 28.2 MB of archives. After unpacking 110 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.7-1 [814 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.3-1 [105 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.7-1 [2162 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3.1 [9004 B] Get: 12 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b2 [40.3 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.7-1 [1965 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.7-1 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-9 [97.2 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 44 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.20.2-1 [10.3 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 74.1.2-2 [736 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20240824 [109 kB] Fetched 28.2 MB in 0s (66.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19946 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-1_amd64.deb ... Unpacking python3.12-minimal (3.12.7-1) ... Setting up libpython3.12-minimal:amd64 (3.12.7-1) ... Setting up libexpat1:amd64 (2.6.3-1) ... Setting up python3.12-minimal (3.12.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20266 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_amd64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.1-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-3.1_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-3.1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-1_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-1_amd64.deb ... Unpacking python3.12 (3.12.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:amd64 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Oct 23 00:02:05 UTC 2024. Universal Time is now: Wed Oct 23 00:02:05 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up readline-common (8.2-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:amd64 (1.3.0-3+b2) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-1) ... Setting up python3.12 (3.12.7-1) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-zipp (3.20.2-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.3.0-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-setuptools (74.1.2-2) ... Setting up dh-python (6.20240824) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/optimir-1.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../optimir_1.2-2_source.changes dpkg-buildpackage: info: source package optimir dpkg-buildpackage: info: source version 1.2-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir copying optimir/__init__.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir copying optimir/command_line.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir creating /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/__init__.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/mapping.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/library_preparation.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/post_process.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/scoring.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/read_collapser.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/essentials.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/get_counts.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/filter_reads.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/annotate.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/consistency.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/process.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/summarize.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/pre_process.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs running egg_info creating OptimiR.egg-info writing OptimiR.egg-info/PKG-INFO writing dependency_links to OptimiR.egg-info/dependency_links.txt writing entry points to OptimiR.egg-info/entry_points.txt writing requirements to OptimiR.egg-info/requires.txt writing top-level names to OptimiR.egg-info/top_level.txt writing manifest file 'OptimiR.egg-info/SOURCES.txt' reading manifest file 'OptimiR.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'OptimiR.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'optimir.resources.coordinates' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'optimir.resources.coordinates' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'optimir.resources.coordinates' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'optimir.resources.coordinates' to be distributed and are already explicitly excluding 'optimir.resources.coordinates' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'optimir.resources.fasta' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'optimir.resources.fasta' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'optimir.resources.fasta' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'optimir.resources.fasta' to be distributed and are already explicitly excluding 'optimir.resources.fasta' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources creating /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates copying optimir/resources/coordinates/hsa_miRBase_v21.gff3 -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates copying optimir/resources/coordinates/hsa_miRBase_v22.gff3 -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates copying optimir/resources/coordinates/hsa_miRCarta_v1.1.gff3 -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates copying optimir/resources/coordinates/hsa_miRgeneDB_v2.gff3 -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates creating /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_hairpins_miRBase_v21.fa -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_hairpins_miRBase_v22.fa -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_hairpins_miRCarta_v1.1.fa -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_hairpins_miRgeneDB_v2.fa -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_matures_miRBase_v21.fa -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_matures_miRBase_v22.fa -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_matures_miRCarta_v1.1.fa -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_matures_miRgeneDB_v2.fa -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build; python3.12 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/optimir/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/optimir-1.2/debian/optimir running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing OptimiR.egg-info/PKG-INFO writing dependency_links to OptimiR.egg-info/dependency_links.txt writing entry points to OptimiR.egg-info/entry_points.txt writing requirements to OptimiR.egg-info/requires.txt writing top-level names to OptimiR.egg-info/top_level.txt reading manifest file 'OptimiR.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'OptimiR.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'optimir.resources.coordinates' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'optimir.resources.coordinates' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'optimir.resources.coordinates' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'optimir.resources.coordinates' to be distributed and are already explicitly excluding 'optimir.resources.coordinates' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'optimir.resources.fasta' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'optimir.resources.fasta' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'optimir.resources.fasta' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'optimir.resources.fasta' to be distributed and are already explicitly excluding 'optimir.resources.fasta' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running install_lib creating /build/reproducible-path/optimir-1.2/debian/optimir/usr creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12 creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/__init__.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/coordinates copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates/hsa_miRCarta_v1.1.gff3 -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/coordinates copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates/hsa_miRgeneDB_v2.gff3 -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/coordinates copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates/hsa_miRBase_v21.gff3 -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/coordinates copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates/hsa_miRBase_v22.gff3 -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/coordinates creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_hairpins_miRBase_v22.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_hairpins_miRBase_v21.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_matures_miRBase_v22.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_matures_miRBase_v21.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_matures_miRgeneDB_v2.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_hairpins_miRCarta_v1.1.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_matures_miRCarta_v1.1.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_hairpins_miRgeneDB_v2.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/command_line.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/__pycache__ copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/__pycache__ creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/__init__.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/mapping.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/library_preparation.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/post_process.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/scoring.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/read_collapser.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/essentials.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/get_counts.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/filter_reads.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/__pycache__ copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/__pycache__ copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/annotate.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/consistency.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/process.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/summarize.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/pre_process.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/command_line.py to command_line.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/mapping.py to mapping.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/library_preparation.py to library_preparation.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/post_process.py to post_process.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/scoring.py to scoring.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/read_collapser.py to read_collapser.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/essentials.py to essentials.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/get_counts.py to get_counts.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/filter_reads.py to filter_reads.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/annotate.py to annotate.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/consistency.py to consistency.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/process.py to process.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/summarize.py to summarize.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/pre_process.py to pre_process.cpython-312.pyc running install_egg_info Copying OptimiR.egg-info to /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/OptimiR-1.0.egg-info Skipping SOURCES.txt running install_scripts Installing optimir script to /build/reproducible-path/optimir-1.2/debian/optimir/usr/bin dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/optimir-1.2' dh_installman debian/optimir.1 make[1]: Leaving directory '/build/reproducible-path/optimir-1.2' dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package optimir: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'optimir' in '../optimir_1.2-2_all.deb'. dpkg-genbuildinfo --build=binary -O../optimir_1.2-2_amd64.buildinfo dpkg-genchanges --build=binary -O../optimir_1.2-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2855931 and its subdirectories I: Current time: Tue Oct 22 12:02:38 -12 2024 I: pbuilder-time-stamp: 1729641758 Wed Oct 23 00:02:39 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Wed Oct 23 00:02:39 UTC 2024 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Wed Oct 23 00:04:27 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Wed Oct 23 00:04:27 UTC 2024 I: optimir_1.2-2_amd64.changes: Format: 1.8 Date: Tue, 22 Oct 2024 15:16:30 +0200 Source: optimir Binary: optimir Architecture: all Version: 1.2-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alexandre Detiste Description: optimir - Integrating genetic variations in miRNA alignment Closes: 1085756 Changes: optimir (1.2-2) unstable; urgency=medium . * Team upload. * Fix SyntaxWarning (Closes: #1085756) Checksums-Sha1: 4bdbb5ab3f3d38f87a469025c37ad8b41d893c21 1026452 optimir_1.2-2_all.deb 76552e51ad3e0425208071b3b1ce4de1906aa3fa 5661 optimir_1.2-2_amd64.buildinfo Checksums-Sha256: d469eaf249bf000c43a43baef65f67064ff7dea54425370ab5f6f087efd903e9 1026452 optimir_1.2-2_all.deb 39027ea56f109541023c49b39b7635066f669037d67333152c3a7db46dbd31be 5661 optimir_1.2-2_amd64.buildinfo Files: 1c579a6e7b2b7536984649e00d733a3e 1026452 science optional optimir_1.2-2_all.deb 6bd00e5529021a08a19fbe4098b33e83 5661 science optional optimir_1.2-2_amd64.buildinfo Wed Oct 23 00:04:29 UTC 2024 I: diffoscope 281 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_5-22327.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.jwb8wAkE/optimir_1.2-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.jwb8wAkE/optimir_1.2-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.jwb8wAkE/optimir_1.2-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.jwb8wAkE/b1/optimir_1.2-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.jwb8wAkE/b2/optimir_1.2-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.397s) 0.397s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.028s) 0.028s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 743ms CPU time consumed: 743ms Wed Oct 23 00:04:30 UTC 2024 I: diffoscope 281 found no differences in the changes files, and a .buildinfo file also exists. Wed Oct 23 00:04:30 UTC 2024 I: optimir from unstable built successfully and reproducibly on amd64. Wed Oct 23 00:04:31 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Oct 23 00:04:31 UTC 2024 I: Submitting 8.0K b1/optimir_1.2-2_amd64.buildinfo.asc Wed Oct 23 00:04:32 UTC 2024 I: Submitting 8.0K b2/optimir_1.2-2_amd64.buildinfo.asc Wed Oct 23 00:04:32 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Oct 23 00:04:32 UTC 2024 I: Done submitting .buildinfo files. Wed Oct 23 00:04:32 UTC 2024 I: Removing signed optimir_1.2-2_amd64.buildinfo.asc files: removed './b1/optimir_1.2-2_amd64.buildinfo.asc' removed './b2/optimir_1.2-2_amd64.buildinfo.asc'