Sat Nov 22 16:56:28 UTC 2025 I: starting to build obitools/unstable/amd64 on jenkins on '2025-11-22 16:56' Sat Nov 22 16:56:28 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_34/92289/console.log Sat Nov 22 16:56:28 UTC 2025 I: Downloading source for unstable/obitools=3.0.1~b26+dfsg-5 --2025-11-22 16:56:28-- http://deb.debian.org/debian/pool/main/o/obitools/obitools_3.0.1%7eb26%2bdfsg-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2338 (2.3K) [text/prs.lines.tag] Saving to: ‘obitools_3.0.1~b26+dfsg-5.dsc’ 0K .. 100% 263M=0s 2025-11-22 16:56:28 (263 MB/s) - ‘obitools_3.0.1~b26+dfsg-5.dsc’ saved [2338/2338] Sat Nov 22 16:56:28 UTC 2025 I: obitools_3.0.1~b26+dfsg-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: obitools Binary: obitools Architecture: any Version: 3.0.1~b26+dfsg-5 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille Homepage: https://metabarcoding.org/obitools3 Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/obitools Vcs-Git: https://salsa.debian.org/med-team/obitools.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: less Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-dev:native, libpython3-dev, python3-setuptools, cython3, cmake Package-List: obitools deb science optional arch=any Checksums-Sha1: 79040b3e48957ae1669e2b094fb3fc56a8d0db7b 255092 obitools_3.0.1~b26+dfsg.orig.tar.xz ffd30d3464fc011b1beed5c1e35a304504fd26c6 3556872 obitools_3.0.1~b26+dfsg-5.debian.tar.xz Checksums-Sha256: 6f067e22b76e4489288f7a3d13027391ecba5719de324c2ca58ec4542bc60e91 255092 obitools_3.0.1~b26+dfsg.orig.tar.xz 6c2586e55d1238b06add627bd9019589d332e22aa25bf78985c2c45fb058fd62 3556872 obitools_3.0.1~b26+dfsg-5.debian.tar.xz Files: 974e65eaa6d1a2f51a7f5594b6987349 255092 obitools_3.0.1~b26+dfsg.orig.tar.xz d56d5260d442fab59951dc2232ced855 3556872 obitools_3.0.1~b26+dfsg-5.debian.tar.xz Dgit: 0cf71937a31c6707e102f76085ca680420116ddf debian archive/debian/3.0.1_b26+dfsg-5 https://git.dgit.debian.org/obitools -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmkKfpAUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpP0xAAwH4I2vHp/Zy082DgHMPFMv1ZH20u 9tPAc/LzW1r0y3DiFw4nxgWgOELsPIYvxvPj23GaIKclbnjhLdqfD5zsM+Sz/w8E yJRC/zSWq5xKEuBn+vm4+9PUhjyiB5+0ISfVcizpfkLAb4H7VGNih4kXl7hd00Iu 65pdlSCR8wmqdypfmnBwQDmVo0a66mlaRVgzZZGh2nVDSo/whHCcjgRDPfgTVIPC 45kmJrdBjzbWCrLX4lKVbL7USzLsGOAaGu5bKnWAXoUhQ6BtyCqI9BErCWM4fpMI aRYtnD3ZkQ4Xm6uOewvv8Kk9P1mLXhEgbY9uwgoyT+LlFrmiH1sAt6xA1pOlgG+z KB6Tx3FGEClxWwYVoxOrn4OMqrSHINdmgdvkRSsdpQRQlqtiktgPFSwabYnAeYAY DFaZ10agoy5tMu3igjxEuUQNE9FBh5rOj1oWC0nSvyGTkvi2iaQkbIbKQiSsd7Pw oWr89IPWIUpAYdSDblebixkw7oGaDPsgBTKXeLpj8Rnw+nTQ9FZfJIyG95oGlbsX IKRxq3oNtJa0tsZ4mlK3kg0T38mADwwKM2++EnAwWvJAoZfLvaOFSnjRsMFz1jeJ wiuoMX8R0NSkViEFwpU9FBal7SQ9sMqTQiOoOHX6+QGXKANmhuWKpJwlX5zEhsWs qfiICgSzsxQMk1I= =XFBX -----END PGP SIGNATURE----- Sat Nov 22 16:56:28 UTC 2025 I: Checking whether the package is not for us Sat Nov 22 16:56:28 UTC 2025 I: Starting 1st build on remote node infom02-amd64.debian.net. Sat Nov 22 16:56:28 UTC 2025 I: Preparing to do remote build '1' on infom02-amd64.debian.net. Sat Nov 22 17:04:56 UTC 2025 I: Deleting $TMPDIR on infom02-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 25 11:19:30 -12 2026 I: pbuilder-time-stamp: 1798240770 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [obitools_3.0.1~b26+dfsg-5.dsc] I: copying [./obitools_3.0.1~b26+dfsg.orig.tar.xz] I: copying [./obitools_3.0.1~b26+dfsg-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./obitools_3.0.1~b26+dfsg-5.dsc: no acceptable signature found dpkg-source: info: extracting obitools in obitools-3.0.1~b26+dfsg dpkg-source: info: unpacking obitools_3.0.1~b26+dfsg.orig.tar.xz dpkg-source: info: unpacking obitools_3.0.1~b26+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying cmake_debian_options dpkg-source: info: applying no_cython_in_binary_package.patch dpkg-source: info: applying any_arch dpkg-source: info: applying no-rpath dpkg-source: info: applying python3.12 dpkg-source: info: applying python3.13 dpkg-source: info: applying cython3.patch dpkg-source: info: applying cflags.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/327011/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f093236e58a9407eadf3109c606b0924' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='327011' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.t8zM5IvO/pbuilderrc_kwZs --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.t8zM5IvO/b1 --logfile b1/build.log obitools_3.0.1~b26+dfsg-5.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom02-amd64 6.12.57+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.57-1 (2025-11-05) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/327011/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-dev:native, libpython3-dev, python3-setuptools, cython3, cmake dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19866 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-dev:native. pbuilder-satisfydepends-dummy depends on libpython3-dev; however: Package libpython3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjs-sphinxdoc{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 94 newly installed, 0 to remove and 0 not upgraded. Need to get 51.2 MB of archives. After unpacking 195 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.2-1 [245 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-3 [878 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.2-1 [772 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.4 [640 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.22.1-2 [33.1 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.22.1-2 [81.1 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 42 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.22.1-2 [337 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.22.1-2 [139 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.10-1 [444 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.10-3 [1493 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.17.0-2 [409 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-5 [82.6 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.6-1.1 [135 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 cmake amd64 4.1.1+really3.31.6-2 [12.2 MB] Get: 62 http://deb.debian.org/debian unstable/main amd64 cython3 amd64 3.1.6+dfsg-2 [2349 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 69 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.2-1 [1687 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.7.3-1 [165 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.2.3-9 [27.7 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.9-1 [2184 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.9-1 [5311 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.7-1 [10.5 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.9-1 [504 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.7-1 [26.1 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 51.2 MB in 6s (8146 kB/s) Preconfiguring packages ... 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Setting up libpython3.13-dev:amd64 (3.13.9-1) ... Setting up cython3 (3.1.6+dfsg-2) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up libpython3-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up libcurl4t64:amd64 (8.17.0-2) ... Setting up python3.13-dev (3.13.9-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up debhelper (13.28) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.7-1) ... Setting up cmake (4.1.1+really3.31.6-2) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/obitools-3.0.1~b26+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../obitools_3.0.1~b26+dfsg-5_source.changes dpkg-buildpackage: info: source package obitools dpkg-buildpackage: info: source version 3.0.1~b26+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean Compiling python/obitools3/utils.pyx because it changed. Compiling python/obitools3/libalign/_qsassemble.pyx because it changed. Compiling python/obitools3/libalign/_freeendgapfm.pyx because it changed. 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******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: Other/Proprietary License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_clean rm -rf build rm -f doc/sphinx/build_dir.txt rm -rf src/OBITools.egg-info make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config Compiling python/obitools3/utils.pyx because it changed. 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******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: Other/Proprietary License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: Other/Proprietary License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! 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"/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles/cobitools3.dir/DependInfo.cmake" "--color=" make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/build make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' [ 1%] Building C object CMakeFiles/cobitools3.dir/obisig.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obisig.c.o -MF CMakeFiles/cobitools3.dir/obisig.c.o.d -o 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"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_blob.c" [ 28%] Building C object CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o -MF CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o.d -o CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/dna_seq_indexer.c" [ 30%] Building C object CMakeFiles/cobitools3.dir/obi_ecotag.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_ecotag.c.o -MF CMakeFiles/cobitools3.dir/obi_ecotag.c.o.d -o CMakeFiles/cobitools3.dir/obi_ecotag.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_ecotag.c" [ 32%] Building C object CMakeFiles/cobitools3.dir/encode.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/encode.c.o -MF CMakeFiles/cobitools3.dir/encode.c.o.d -o CMakeFiles/cobitools3.dir/encode.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/encode.c" [ 34%] Building C object CMakeFiles/cobitools3.dir/obiavl.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiavl.c.o -MF CMakeFiles/cobitools3.dir/obiavl.c.o.d -o CMakeFiles/cobitools3.dir/obiavl.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiavl.c" [ 36%] Building C object CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o -MF CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o.d -o CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/sse_banded_LCS_alignment.c" [ 38%] Building C object CMakeFiles/cobitools3.dir/kmer_similarity.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/kmer_similarity.c.o -MF CMakeFiles/cobitools3.dir/kmer_similarity.c.o.d -o CMakeFiles/cobitools3.dir/kmer_similarity.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/kmer_similarity.c" [ 40%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_qual.c" [ 42%] Building C object CMakeFiles/cobitools3.dir/obi_clean.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_clean.c.o -MF CMakeFiles/cobitools3.dir/obi_clean.c.o.d -o CMakeFiles/cobitools3.dir/obi_clean.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_clean.c" [ 44%] Building C object CMakeFiles/cobitools3.dir/utils.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/utils.c.o -MF CMakeFiles/cobitools3.dir/utils.c.o.d -o CMakeFiles/cobitools3.dir/utils.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/utils.c" [ 46%] Building C object CMakeFiles/cobitools3.dir/uint8_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/uint8_indexer.c.o -MF CMakeFiles/cobitools3.dir/uint8_indexer.c.o.d -o CMakeFiles/cobitools3.dir/uint8_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/uint8_indexer.c" [ 48%] Building C object CMakeFiles/cobitools3.dir/murmurhash2.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/murmurhash2.c.o -MF CMakeFiles/cobitools3.dir/murmurhash2.c.o.d -o CMakeFiles/cobitools3.dir/murmurhash2.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/murmurhash2.c" [ 50%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_char.c" [ 51%] Building C object CMakeFiles/cobitools3.dir/obiview.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiview.c.o -MF CMakeFiles/cobitools3.dir/obiview.c.o.d -o CMakeFiles/cobitools3.dir/obiview.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiview.c" [ 53%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_int.c" [ 55%] Building C object CMakeFiles/cobitools3.dir/linked_list.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/linked_list.c.o -MF CMakeFiles/cobitools3.dir/linked_list.c.o.d -o CMakeFiles/cobitools3.dir/linked_list.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/linked_list.c" [ 57%] Building C object CMakeFiles/cobitools3.dir/obiblob.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiblob.c.o -MF CMakeFiles/cobitools3.dir/obiblob.c.o.d -o CMakeFiles/cobitools3.dir/obiblob.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiblob.c" [ 59%] Building C object CMakeFiles/cobitools3.dir/hashtable.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/hashtable.c.o -MF CMakeFiles/cobitools3.dir/hashtable.c.o.d -o CMakeFiles/cobitools3.dir/hashtable.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/hashtable.c" [ 61%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn.c" [ 63%] Building C object CMakeFiles/cobitools3.dir/char_str_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/char_str_indexer.c.o -MF CMakeFiles/cobitools3.dir/char_str_indexer.c.o.d -o CMakeFiles/cobitools3.dir/char_str_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/char_str_indexer.c" [ 65%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_float.c" [ 67%] Building C object CMakeFiles/cobitools3.dir/upperband.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/upperband.c.o -MF CMakeFiles/cobitools3.dir/upperband.c.o.d -o CMakeFiles/cobitools3.dir/upperband.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/upperband.c" [ 69%] Building C object CMakeFiles/cobitools3.dir/crc64.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/crc64.c.o -MF CMakeFiles/cobitools3.dir/crc64.c.o.d -o CMakeFiles/cobitools3.dir/crc64.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/crc64.c" [ 71%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_seq.c" [ 73%] Building C object CMakeFiles/cobitools3.dir/obilittlebigman.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumndir.c" [ 76%] Building C object CMakeFiles/cobitools3.dir/obidms.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidms.c.o -MF CMakeFiles/cobitools3.dir/obidms.c.o.d -o CMakeFiles/cobitools3.dir/obidms.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidms.c" [ 78%] Building C object CMakeFiles/cobitools3.dir/obi_ecopcr.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_ecopcr.c.o -MF CMakeFiles/cobitools3.dir/obi_ecopcr.c.o.d -o CMakeFiles/cobitools3.dir/obi_ecopcr.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_ecopcr.c" [ 80%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libthermo/nnparams.c" [ 82%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecoapat.c" [ 84%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/libstki.c" [ 86%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/apat_search.c" [ 88%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/apat_parse.c" [ 90%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecodna.c" [ 92%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecoMalloc.c" [ 94%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I 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CMakeFiles/cobitools3.dir/array_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/array_indexer.c.o -MF CMakeFiles/cobitools3.dir/array_indexer.c.o.d -o CMakeFiles/cobitools3.dir/array_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/array_indexer.c" [100%] Linking C shared library libcobitools3.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cobitools3.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o CMakeFiles/cobitools3.dir/kmer_similarity.c.o CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o CMakeFiles/cobitools3.dir/obi_clean.c.o CMakeFiles/cobitools3.dir/utils.c.o CMakeFiles/cobitools3.dir/uint8_indexer.c.o CMakeFiles/cobitools3.dir/murmurhash2.c.o CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o CMakeFiles/cobitools3.dir/obiview.c.o CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o CMakeFiles/cobitools3.dir/linked_list.c.o CMakeFiles/cobitools3.dir/obiblob.c.o CMakeFiles/cobitools3.dir/hashtable.c.o CMakeFiles/cobitools3.dir/obidmscolumn.c.o CMakeFiles/cobitools3.dir/char_str_indexer.c.o CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o CMakeFiles/cobitools3.dir/upperband.c.o CMakeFiles/cobitools3.dir/crc64.c.o CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o CMakeFiles/cobitools3.dir/obilittlebigman.c.o CMakeFiles/cobitools3.dir/obidmscolumndir.c.o CMakeFiles/cobitools3.dir/obidms.c.o CMakeFiles/cobitools3.dir/obi_ecopcr.c.o CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o CMakeFiles/cobitools3.dir/obitypes.c.o CMakeFiles/cobitools3.dir/array_indexer.c.o /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' [100%] Built target cobitools3 make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory 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python/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign copying python/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format copying python/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/uri copying python/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/uri creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands copying python/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms copying python/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo copying python/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/capi copying python/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/capi creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view copying python/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view copying python/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column copying python/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column copying python/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers copying python/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers copying python/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps copying python/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/optiongroups copying python/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/optiongroups creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files copying python/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files running build_ext building 'obitools3.utils' extension creating build/temp.linux-x86_64-cpython-313/build/python/obitools3 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/utils.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/utils.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/utils.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/utils.cpython-313-x86_64-linux-gnu.so building 'obitools3.libalign._qsassemble' extension creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_qsassemble.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_qsassemble.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_qsassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_qsassemble.cpython-313-x86_64-linux-gnu.so building 'obitools3.libalign._freeendgapfm' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_freeendgapfm.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_freeendgapfm.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_freeendgapfm.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_freeendgapfm.cpython-313-x86_64-linux-gnu.so building 'obitools3.libalign._freeendgap' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_freeendgap.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_freeendgap.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_freeendgap.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_freeendgap.cpython-313-x86_64-linux-gnu.so building 'obitools3.libalign._qsrassemble' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_qsrassemble.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_qsrassemble.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_qsrassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_qsrassemble.cpython-313-x86_64-linux-gnu.so building 'obitools3.libalign._nws' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_nws.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_nws.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_nws.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_nws.cpython-313-x86_64-linux-gnu.so building 'obitools3.libalign.shifted_ali' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/shifted_ali.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/shifted_ali.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/shifted_ali.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/shifted_ali.cpython-313-x86_64-linux-gnu.so building 'obitools3.libalign._assemble' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_assemble.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_assemble.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_assemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_assemble.cpython-313-x86_64-linux-gnu.so building 'obitools3.libalign.apat_pattern' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/apat_pattern.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/apat_pattern.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/apat_pattern.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/apat_pattern.cpython-313-x86_64-linux-gnu.so building 'obitools3.libalign._solexapairend' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_solexapairend.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_solexapairend.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_solexapairend.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_solexapairend.cpython-313-x86_64-linux-gnu.so building 'obitools3.libalign._rassemble' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_rassemble.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_rassemble.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_rassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_rassemble.cpython-313-x86_64-linux-gnu.so building 'obitools3.libalign._dynamic' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_dynamic.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_dynamic.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_dynamic.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_dynamic.cpython-313-x86_64-linux-gnu.so building 'obitools3.format.fasta' extension creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/format x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/format/fasta.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/format/fasta.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/format/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/fasta.cpython-313-x86_64-linux-gnu.so building 'obitools3.format.header' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/format/header.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/format/header.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/format/header.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/header.cpython-313-x86_64-linux-gnu.so building 'obitools3.format.fastq' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/format/fastq.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/format/fastq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/format/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/fastq.cpython-313-x86_64-linux-gnu.so building 'obitools3.format.tab' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/format/tab.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/format/tab.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/format/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/tab.cpython-313-x86_64-linux-gnu.so building 'obitools3.uri.decode' extension creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/uri x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/uri/decode.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/uri/decode.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/uri/decode.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/uri/decode.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.sort' extension creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/sort.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/sort.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/sort.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/sort.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.split' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/split.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/split.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/split.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/split.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.uniq' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/uniq.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/uniq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/uniq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/uniq.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.tail' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/tail.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/tail.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/tail.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/tail.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.clean' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/clean.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/clean.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/clean.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/clean.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.ecopcr' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/ecopcr.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ecopcr.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ecopcr.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ecopcr.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.import' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/import.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/import.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/import.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/import.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.head' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/head.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/head.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/head.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/head.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.rm' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/rm.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/rm.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/rm.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/rm.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.ls' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/ls.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ls.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ls.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ls.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.export' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/export.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/export.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/export.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/export.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.less' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/less.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/less.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/less.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/less.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.cat' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/cat.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/cat.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/cat.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/cat.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.test' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/test.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/test.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/test.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/test.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.alignpairedend' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/alignpairedend.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/alignpairedend.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/alignpairedend.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/alignpairedend.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.ecotag' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/ecotag.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ecotag.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ecotag.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ecotag.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.annotate' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/annotate.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/annotate.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/annotate.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/annotate.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.ngsfilter' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/ngsfilter.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ngsfilter.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ngsfilter.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ngsfilter.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.clean_dms' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/clean_dms.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/clean_dms.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/clean_dms.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/clean_dms.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.taxonomy' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/taxonomy.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/taxonomy.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/taxonomy.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/taxonomy.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.build_ref_db' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/build_ref_db.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/build_ref_db.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/build_ref_db.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/build_ref_db.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.grep' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/grep.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/grep.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/grep.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/grep.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.count' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/count.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/count.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/count.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/count.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.history' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/history.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/history.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/history.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/history.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.stats' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/stats.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/stats.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/stats.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/stats.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.align' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/align.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/align.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/align.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/align.cpython-313-x86_64-linux-gnu.so building 'obitools3.commands.addtaxids' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/addtaxids.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/addtaxids.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/addtaxids.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/addtaxids.cpython-313-x86_64-linux-gnu.so building 'obitools3.dms.obiseq' extension creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/obiseq.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/obiseq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/obiseq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/obiseq.cpython-313-x86_64-linux-gnu.so building 'obitools3.dms.dms' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/dms.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/dms.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/dms.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/dms.cpython-313-x86_64-linux-gnu.so building 'obitools3.dms.object' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/object.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/object.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/object.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/object.cpython-313-x86_64-linux-gnu.so building 'obitools3.dms.taxo.taxo' extension creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/taxo x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/taxo/taxo.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/taxo/taxo.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/taxo/taxo.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo/taxo.cpython-313-x86_64-linux-gnu.so building 'obitools3.dms.view.view' extension creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/view x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/view/view.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/view/view.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/view/view.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/view.cpython-313-x86_64-linux-gnu.so building 'obitools3.dms.view.typed_view.view_NUC_SEQS' extension creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/view/typed_view x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-313-x86_64-linux-gnu.so building 'obitools3.dms.column.column' extension creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/column.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/column.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/column.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/column.cpython-313-x86_64-linux-gnu.so building 'obitools3.dms.column.column_idx' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/column_idx.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/column_idx.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/column_idx.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/column_idx.cpython-313-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.qual' extension creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/qual.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/qual.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/qual.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/qual.cpython-313-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.char' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/char.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/char.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/char.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/char.cpython-313-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.int' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/int.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/int.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/int.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/int.cpython-313-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.seq' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/seq.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/seq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/seq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/seq.cpython-313-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.bool' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/bool.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/bool.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/bool.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/bool.cpython-313-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.str' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/str.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/str.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/str.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/str.cpython-313-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.float' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/float.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/float.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/float.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/float.cpython-313-x86_64-linux-gnu.so building 'obitools3.parsers.embl_genbank_features' extension creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/embl_genbank_features.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/embl_genbank_features.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/embl_genbank_features.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/embl_genbank_features.cpython-313-x86_64-linux-gnu.so building 'obitools3.parsers.genbank' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/genbank.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/genbank.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/genbank.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/genbank.cpython-313-x86_64-linux-gnu.so building 'obitools3.parsers.embl' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/embl.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/embl.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/embl.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/embl.cpython-313-x86_64-linux-gnu.so building 'obitools3.parsers.fasta' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/fasta.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/fasta.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/fasta.cpython-313-x86_64-linux-gnu.so building 'obitools3.parsers.universal' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/universal.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/universal.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/universal.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/universal.cpython-313-x86_64-linux-gnu.so building 'obitools3.parsers.ngsfilter' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/ngsfilter.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/ngsfilter.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/ngsfilter.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/ngsfilter.cpython-313-x86_64-linux-gnu.so building 'obitools3.parsers.header' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/header.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/header.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/header.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/header.cpython-313-x86_64-linux-gnu.so building 'obitools3.parsers.fastq' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/fastq.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/fastq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/fastq.cpython-313-x86_64-linux-gnu.so building 'obitools3.parsers.tab' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/tab.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/tab.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/tab.cpython-313-x86_64-linux-gnu.so building 'obitools3.writers.fasta' extension creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/writers x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/writers/fasta.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/writers/fasta.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/writers/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/fasta.cpython-313-x86_64-linux-gnu.so building 'obitools3.writers.fastq' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/writers/fastq.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/writers/fastq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/writers/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/fastq.cpython-313-x86_64-linux-gnu.so building 'obitools3.writers.tab' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/writers/tab.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/writers/tab.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/writers/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/tab.cpython-313-x86_64-linux-gnu.so building 'obitools3.apps.arguments' extension creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/apps/arguments.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps/arguments.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps/arguments.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/arguments.cpython-313-x86_64-linux-gnu.so building 'obitools3.apps.config' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/apps/config.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps/config.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps/config.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/config.cpython-313-x86_64-linux-gnu.so building 'obitools3.apps.progress' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/apps/progress.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps/progress.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps/progress.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/progress.cpython-313-x86_64-linux-gnu.so building 'obitools3.apps.command' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/apps/command.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps/command.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps/command.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/command.cpython-313-x86_64-linux-gnu.so building 'obitools3.apps.logging' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/apps/logging.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps/logging.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps/logging.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/logging.cpython-313-x86_64-linux-gnu.so building 'obitools3.apps.temp' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/apps/temp.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps/temp.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps/temp.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/temp.cpython-313-x86_64-linux-gnu.so building 'obitools3.files.uncompress' extension creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/files x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/files/uncompress.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/files/uncompress.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/files/uncompress.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/uncompress.cpython-313-x86_64-linux-gnu.so building 'obitools3.files.linebuffer' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/files/linebuffer.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/files/linebuffer.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/files/linebuffer.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/linebuffer.cpython-313-x86_64-linux-gnu.so building 'obitools3.files.universalopener' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/files/universalopener.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/files/universalopener.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/files/universalopener.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/universalopener.cpython-313-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.13 copying and adjusting scripts/obi -> build/scripts-3.13 changing mode of build/scripts-3.13/obi from 644 to 755 dh_auto_test -O--buildsystem=pybuild create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' PYTHONPATH=/build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build \ http_proxy='127.0.0.1:9' \ dh_auto_install I: pybuild base:311: /usr/bin/python3 setup.py install --root '/build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools' /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: Other/Proprietary License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_clib Build the build/cobject directory Run CMake CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Configuring done (0.0s) -- Generating done (0.0s) -- Build files have been written to: /build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject Compile the shared C library make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -S"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -B"/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/depend make[4]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' cd "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles/cobitools3.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/build make[4]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make[4]: Nothing to be done for 'CMakeFiles/cobitools3.dir/build'. make[4]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' [100%] Built target cobitools3 make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /build/reproducible-path/obitools-3.0.1~b26+dfsg/libcobitools3.so make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' running build_py running build_ext running build_scripts running install_lib creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/shifted_ali.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_dynamic.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_rassemble.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_freeendgapfm.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/apat_pattern.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_qsassemble.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_freeendgap.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_nws.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_assemble.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_qsrassemble.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_solexapairend.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/tab.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/fastq.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/fasta.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/header.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/uri copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/uri/decode.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/uri copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/uri creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/grep.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/import.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/build_ref_db.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/tail.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/align.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/addtaxids.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/less.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/export.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/taxonomy.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/count.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ecotag.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ngsfilter.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/clean.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/stats.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/rm.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ls.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/history.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/sort.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/uniq.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/alignpairedend.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/cat.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/split.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/clean_dms.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/test.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/annotate.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ecopcr.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/head.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/taxo copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo/taxo.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/taxo copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/taxo copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/dms.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/capi copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/capi copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/obiseq.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/view.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/column_idx.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/column.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/str.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/float.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/qual.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/char.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/seq.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/int.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/bool.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/object.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/tab.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/fastq.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/embl_genbank_features.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/fasta.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/header.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/ngsfilter.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/genbank.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/universal.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/embl.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/utils.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/tab.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/fastq.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/fasta.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/progress.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/config.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/logging.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps/optiongroups copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps/optiongroups copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/command.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/arguments.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/temp.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/linebuffer.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/uncompress.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/universalopener.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign/solexapairend.py to solexapairend.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/uri/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/taxo/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/capi/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/typed_view/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps/optiongroups/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files/__init__.py to __init__.cpython-313.pyc running install_egg_info running egg_info creating python/OBITools3.egg-info writing python/OBITools3.egg-info/PKG-INFO writing dependency_links to python/OBITools3.egg-info/dependency_links.txt writing top-level names to python/OBITools3.egg-info/top_level.txt writing manifest file 'python/OBITools3.egg-info/SOURCES.txt' reading manifest file 'python/OBITools3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'python' warning: no files found matching '*.h' under directory 'python' warning: no files found matching '*.txt' under directory 'doc/sphinx/source' warning: no files found matching '*.rst' under directory 'doc/sphinx/source' warning: no files found matching '*.py' under directory 'doc/sphinx/source' warning: no files found matching '*.py' under directory 'doc/sphinx/sphinxext' warning: no files found matching 'doc/sphinx/Makefile' warning: no files found matching 'doc/sphinx/Doxyfile' adding license file 'LICENSE' writing manifest file 'python/OBITools3.egg-info/SOURCES.txt' Copying python/OBITools3.egg-info to /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/OBITools3-3.0.1b26.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin copying build/scripts-3.13/obi -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin changing mode of /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin/obi to 755 make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_installman find debian -name "ecoPCR.1*" -delete find debian -name "ecofind.1*" -delete make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/obitools/usr/bin/obi dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz: debian/obitools/usr/lib/x86_64-linux-gnu/libcobitools3.so: DWARF compression not beneficial - old size 346380 new size 348741 dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: can't extract name and version from library name 'libcobitools3.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcobitools3.so' dpkg-shlibdeps: warning: symbol floor used by debian/obitools/usr/lib/x86_64-linux-gnu/libcobitools3.so found in none of the libraries dpkg-shlibdeps: warning: symbol log10 used by debian/obitools/usr/lib/x86_64-linux-gnu/libcobitools3.so found in none of the libraries dpkg-shlibdeps: warning: symbol ceil used by debian/obitools/usr/lib/x86_64-linux-gnu/libcobitools3.so found in none of the libraries dpkg-shlibdeps: warning: symbol log used by debian/obitools/usr/lib/x86_64-linux-gnu/libcobitools3.so found in none of the libraries dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'obitools' in '../obitools_3.0.1~b26+dfsg-5_amd64.deb'. dpkg-deb: building package 'obitools-dbgsym' in '../obitools-dbgsym_3.0.1~b26+dfsg-5_amd64.deb'. dpkg-genbuildinfo --build=binary -O../obitools_3.0.1~b26+dfsg-5_amd64.buildinfo dpkg-genchanges --build=binary -O../obitools_3.0.1~b26+dfsg-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/327011 and its subdirectories I: Current time: Fri Dec 25 11:27:56 -12 2026 I: pbuilder-time-stamp: 1798241276 Sat Nov 22 17:04:57 UTC 2025 I: 1st build successful. Starting 2nd build on remote node infom01-amd64.debian.net. Sat Nov 22 17:04:57 UTC 2025 I: Preparing to do remote build '2' on infom01-amd64.debian.net. Sat Nov 22 17:15:19 UTC 2025 I: Deleting $TMPDIR on infom01-amd64.debian.net. Sat Nov 22 17:15:19 UTC 2025 I: obitools_3.0.1~b26+dfsg-5_amd64.changes: Format: 1.8 Date: Tue, 04 Nov 2025 23:20:25 +0100 Source: obitools Binary: obitools obitools-dbgsym Architecture: amd64 Version: 3.0.1~b26+dfsg-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: obitools - programs to analyze NGS data in a DNA metabarcoding context Closes: 1047870 1119509 1119752 Changes: obitools (3.0.1~b26+dfsg-5) unstable; urgency=medium . * Team upload. * cython3.patch: fix build failure with cython3. (Closes: #1119752) * cflags.patch: new: propagate missing CFLAGS. (Closes: #1119509) * d/{clean,rules}: repair the "clean" target. (Closes: #1047870) * d/triggers: new: ensure ldconfig execution after install. * no_cython_in_binary_package.patch: dep3 header. * d/watch: convert to v5 PyPI project scanner. * d/control: drop redundant Rules-Requires-Root: no. * d/control: declare compliance to standards version 4.7.2. Checksums-Sha1: e60d9d42a3752270df982ee951254519a5a79554 16777708 obitools-dbgsym_3.0.1~b26+dfsg-5_amd64.deb 47f985d7a8d586a4cf375302b1272265f07ab32a 6997 obitools_3.0.1~b26+dfsg-5_amd64.buildinfo f9ec1c2bcc8fb36ec9213820e06ff19645a22c99 5702016 obitools_3.0.1~b26+dfsg-5_amd64.deb Checksums-Sha256: b7ddf86c4b78fd5eb02087e340a5b74e4eaf9b256b33db8fbc6ab1e25347adff 16777708 obitools-dbgsym_3.0.1~b26+dfsg-5_amd64.deb 04bd07a02f2172ac980549bb3ff8604629970aa2f64b4ee69bad9303a9bd5dd1 6997 obitools_3.0.1~b26+dfsg-5_amd64.buildinfo 3c98e0677fa57617f1c9c7516c9a1bd67e0dbbedc5d56e86dbed368885300a03 5702016 obitools_3.0.1~b26+dfsg-5_amd64.deb Files: bf2d10058277ecf7dda8aeab75d31f84 16777708 debug optional obitools-dbgsym_3.0.1~b26+dfsg-5_amd64.deb 26c485130dfd73ec47b8bbd15919562a 6997 science optional obitools_3.0.1~b26+dfsg-5_amd64.buildinfo 4bde8fc581664c3e251412919bb877f1 5702016 science optional obitools_3.0.1~b26+dfsg-5_amd64.deb Sat Nov 22 17:15:20 UTC 2025 I: diffoscope 309 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_34-92289.service; invocation ID: 4e0b74be84b04c1ab2e79841beaa0828 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.t8zM5IvO/obitools_3.0.1~b26+dfsg-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.t8zM5IvO/obitools_3.0.1~b26+dfsg-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.t8zM5IvO/obitools_3.0.1~b26+dfsg-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.t8zM5IvO/b1/obitools_3.0.1~b26+dfsg-5_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.t8zM5IvO/b2/obitools_3.0.1~b26+dfsg-5_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 205ms CPU time consumed: 172ms Memory peak: 17.3M (swap: 0B) Sat Nov 22 17:15:22 UTC 2025 I: diffoscope 309 found no differences in the changes files, and a .buildinfo file also exists. Sat Nov 22 17:15:22 UTC 2025 I: obitools from unstable built successfully and reproducibly on amd64. Sat Nov 22 17:15:22 UTC 2025 I: Removing signed obitools_3.0.1~b26+dfsg-5_amd64.buildinfo.asc files: removed './b1/obitools_3.0.1~b26+dfsg-5_amd64.buildinfo.asc' removed './b2/obitools_3.0.1~b26+dfsg-5_amd64.buildinfo.asc'