Fri Oct 25 10:17:59 UTC 2024 I: starting to build obitools/unstable/amd64 on jenkins on '2024-10-25 10:17' Fri Oct 25 10:17:59 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_16/36943/console.log Fri Oct 25 10:17:59 UTC 2024 I: Downloading source for unstable/obitools=1.2.13+dfsg-9 --2024-10-25 10:17:59-- http://deb.debian.org/debian/pool/main/o/obitools/obitools_1.2.13%2bdfsg-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2126 (2.1K) [text/prs.lines.tag] Saving to: ‘obitools_1.2.13+dfsg-9.dsc’ 0K .. 100% 311M=0s 2024-10-25 10:17:59 (311 MB/s) - ‘obitools_1.2.13+dfsg-9.dsc’ saved [2126/2126] Fri Oct 25 10:17:59 UTC 2024 I: obitools_1.2.13+dfsg-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: obitools Binary: obitools Architecture: amd64 Version: 1.2.13+dfsg-9 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille Homepage: https://pypi.python.org/pypi/OBITools Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/obitools Vcs-Git: https://salsa.debian.org/med-team/obitools.git Build-Depends: debhelper-compat (= 13), dh-python, python3-dev, python3-sphinx, cython3-legacy, ipython3, python3-wheel, python3-virtualenv Package-List: obitools deb science optional arch=amd64 Checksums-Sha1: 9078d6d4eb9f1acb5c7a645eda2d5ad41ab82869 241428 obitools_1.2.13+dfsg.orig.tar.xz a34ccfc35c5bece785a3429c0bfd4b7612aa9789 64520 obitools_1.2.13+dfsg-9.debian.tar.xz Checksums-Sha256: 0cbe15fc8c9441e09a279d08c320fb3c35956939ba5497e8322538ea6beb05ae 241428 obitools_1.2.13+dfsg.orig.tar.xz cfa20afca8148eaf62f51cf856267517602e6298a1537da693d50ab4c44bb830 64520 obitools_1.2.13+dfsg-9.debian.tar.xz Files: 6a14bbe8c7a9adb45a3b109758a300da 241428 obitools_1.2.13+dfsg.orig.tar.xz 088205d00db0645901b1f48c45ac13a3 64520 obitools_1.2.13+dfsg-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmZ0RqsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtF4kA//VBXbfaBBP9VdRgprBQyIbuvVTta80SOK nsCwdxz98WQynKclnOXOF4xOR7PIXxZu7NAtj7IptgKXXhuBspYbWIgYbN6wu0Xe /eAlPGCn83FYPEp4cY97/Z69g+0lEEufy4NQZk8bmhC0uuIuJ0Xz+TpWm2VasAxB gKoqE8bNQDnGEFz5bhpQOE0w6soRvwWnjzNgK5pOPxZc0i9Djj5L77Ly3BhsrjU/ A+hjalOsKRPSQ4GJiB7G0+Umh8IX7CzdVa0md6RH30oKX4WZcSh8Pnx+16ZhySTh w4ccmu2mS0HPSp9Latk8Co9h8otRfeHD/AYN3YEIuk8rMnh5wixeOzMNYl1Eg9Ak FyLVyw8AGj3YMdHocImRinJ13VKvOkB6d+YFfkakXPrHK7EuOICD99StmuP0kKex ZVLqW3+xDudHHzi5SbQykJUm8whCWGzE98JqeWcJvY+bKCz5wctfzl3azhIxrBry W5joUWyE0WacJwqnqx6awf4w4VCtISVKipiZ/DrMr15mm7epwrQWBSPrcgu7n4KZ N+0zskDO3RezP/WpBBc6kR8aYxiilIbQuqRlRMtNPkrNwi/MN5nHNUCKIkw27MED 4kWw+D0TNxfFDTnVzgRqV4sW2lezP8SdtUVFFV+iUq7L7Ae1KVcW0JmuiPcayk0e Mkxnbzk5NEg= =EpMI -----END PGP SIGNATURE----- Fri Oct 25 10:17:59 UTC 2024 I: Checking whether the package is not for us Fri Oct 25 10:17:59 UTC 2024 I: Starting 1st build on remote node ionos15-amd64.debian.net. Fri Oct 25 10:17:59 UTC 2024 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Fri Oct 25 10:21:30 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Nov 27 04:41:01 -12 2025 I: pbuilder-time-stamp: 1764261661 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [obitools_1.2.13+dfsg-9.dsc] I: copying [./obitools_1.2.13+dfsg.orig.tar.xz] I: copying [./obitools_1.2.13+dfsg-9.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Jun 20 15:11:39 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./obitools_1.2.13+dfsg-9.dsc: no acceptable signature found dpkg-source: info: extracting obitools in obitools-1.2.13+dfsg dpkg-source: info: unpacking obitools_1.2.13+dfsg.orig.tar.xz dpkg-source: info: unpacking obitools_1.2.13+dfsg-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_libs dpkg-source: info: applying fix_path_interpreter dpkg-source: info: applying 2to3.patch dpkg-source: info: applying port_python3.patch dpkg-source: info: applying deocde-bytes-to-str.patch dpkg-source: info: applying no_cython_in_binary_package.patch dpkg-source: info: applying qsort.patch dpkg-source: info: applying use_pickle.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2858336/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='82b74559a1d74a82965f5d2621906792' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2858336' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vUQv4JyY/pbuilderrc_zSoE --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vUQv4JyY/b1 --logfile b1/build.log obitools_1.2.13+dfsg-9.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2858336/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-dev, python3-sphinx, cython3-legacy, ipython3, python3-wheel, python3-virtualenv dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19947 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on cython3-legacy; however: Package cython3-legacy is not installed. pbuilder-satisfydepends-dummy depends on ipython3; however: Package ipython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-wheel; however: Package python3-wheel is not installed. pbuilder-satisfydepends-dummy depends on python3-virtualenv; however: Package python3-virtualenv is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cython3-legacy{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} ipython3{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-asttokens{a} python3-autocommand{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-decorator{a} python3-defusedxml{a} python3-dev{a} python3-distlib{a} python3-docutils{a} python3-executing{a} python3-filelock{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-ipython{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jedi{a} python3-jinja2{a} python3-markupsafe{a} python3-matplotlib-inline{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-parso{a} python3-pexpect{a} python3-pip-whl{a} python3-pkg-resources{a} python3-platformdirs{a} python3-prompt-toolkit{a} python3-ptyprocess{a} python3-pure-eval{a} python3-pygments{a} python3-requests{a} python3-roman{a} python3-setuptools{a} python3-setuptools-whl{a} python3-snowballstemmer{a} python3-sphinx{a} python3-stack-data{a} python3-traitlets{a} python3-typeguard{a} python3-typeshed{a} python3-typing-extensions{a} python3-urllib3{a} python3-virtualenv{a} python3-wcwidth{a} python3-wheel{a} python3-wheel-whl{a} python3-zipp{a} python3-zombie-imp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tzdata{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common krb5-locales libarchive-cpio-perl libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-matplotlib python3-pil wget 0 packages upgraded, 125 newly installed, 0 to remove and 0 not upgraded. Need to get 57.0 MB of archives. After unpacking 242 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.7-1 [814 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.3-1 [105 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.7-1 [2162 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b2 [40.3 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.7-1 [1965 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.7-1 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31 [15.4 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.2-1 [1381 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-9 [97.2 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 python3-zombie-imp all 0.0.2-2 [11.7 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 cython3-legacy amd64 0.29.37-2+b1 [1967 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 49 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 63 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.20.2-1 [10.3 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.2.0-1 [731 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20241024 [109 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 python3-parso all 0.8.3-1 [67.4 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 python3-typeshed all 0.0~git20231111.6764465-3 [1258 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 python3-jedi all 0.19.1+ds1-1 [691 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 python3-matplotlib-inline all 0.1.6-2 [8652 B] Get: 77 http://deb.debian.org/debian unstable/main amd64 python3-ptyprocess all 0.7.0-5 [14.7 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 python3-pexpect all 4.9-3 [55.6 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 python3-prompt-toolkit all 3.0.48-1 [277 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 python3-asttokens all 2.4.1-2 [20.5 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 python3-executing all 2.1.0-0.1 [23.9 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 python3-pure-eval all 0.2.2-2 [11.0 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 python3-stack-data all 0.6.3-1 [21.6 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 python3-ipython all 8.20.0-1 [556 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 ipython3 all 8.20.0-1 [33.2 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.6.3-1 [157 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 7.4.7-3 [158 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libpython3.12t64 amd64 3.12.7-1 [2149 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libpython3.12-dev amd64 3.12.7-1 [5122 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.12.6-1 [9952 B] Get: 97 http://deb.debian.org/debian unstable/main amd64 python-babel-localedata all 2.14.0-1 [5701 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 python3-babel all 2.14.0-1 [111 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 101 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.0-1 [118 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-2 [43.3 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3.12-dev amd64 3.12.7-1 [505 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.12.6-1 [26.1 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-distlib all 0.3.9-1 [257 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-roman all 4.2-1 [10.4 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 python3-filelock all 3.16.1-1 [12.6 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.8-2 [41.6 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 112 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 2.1.5-1+b1 [13.6 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.1-1 [45.8 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 python3-pip-whl all 24.2+dfsg-1 [1494 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.0.7-2 [111 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 python3-setuptools-whl all 75.2.0-1 [1249 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 sphinx-common all 7.4.7-3 [731 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 python3-sphinx all 7.4.7-3 [588 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 python3-wheel-whl all 0.44.0-2 [70.1 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 python3-virtualenv all 20.27.0+ds-1 [71.1 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.44.0-2 [53.4 kB] Fetched 57.0 MB in 14s (3995 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19947 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-1_amd64.deb ... Unpacking python3.12-minimal (3.12.7-1) ... Setting up libpython3.12-minimal:amd64 (3.12.7-1) ... Setting up libexpat1:amd64 (2.6.3-1) ... Setting up python3.12-minimal (3.12.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20267 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_amd64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.1-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-1_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-1_amd64.deb ... Unpacking python3.12 (3.12.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21327 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_amd64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.3.2-1_amd64.deb ... Unpacking openssl (3.3.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../006-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../009-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.40.2-9_amd64.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../012-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... 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Preparing to unpack .../020-cython3-legacy_0.29.37-2+b1_amd64.deb ... Unpacking cython3-legacy (0.29.37-2+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../021-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../022-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../023-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../024-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../025-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../026-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../027-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../028-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../029-libicu72_72.1-5_amd64.deb ... Unpacking libicu72:amd64 (72.1-5) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../030-libxml2_2.12.7+dfsg+really2.9.14-0.1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../031-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../032-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../033-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../034-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../035-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../036-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../037-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../038-python3-typeguard_4.3.0-1_all.deb ... Unpacking python3-typeguard (4.3.0-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../039-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../040-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../041-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../042-python3-pkg-resources_75.2.0-1_all.deb ... Unpacking python3-pkg-resources (75.2.0-1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../043-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../044-python3-zipp_3.20.2-1_all.deb ... Unpacking python3-zipp (3.20.2-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../045-python3-setuptools_75.2.0-1_all.deb ... Unpacking python3-setuptools (75.2.0-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../046-dh-python_6.20241024_all.deb ... Unpacking dh-python (6.20241024) ... Selecting previously unselected package xml-core. Preparing to unpack .../047-xml-core_0.19_all.deb ... Unpacking xml-core (0.19) ... Selecting previously unselected package docutils-common. Preparing to unpack .../048-docutils-common_0.21.2+dfsg-2_all.deb ... Unpacking docutils-common (0.21.2+dfsg-2) ... Selecting previously unselected package python3-decorator. 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Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:amd64 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up python-babel-localedata (2.14.0-1) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Nov 27 16:42:25 UTC 2025. Universal Time is now: Thu Nov 27 16:42:25 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libexpat1-dev:amd64 (2.6.3-1) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... 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Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up xml-core (0.19) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Setting up python3-pip-whl (24.2+dfsg-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up sphinx-common (7.4.7-3) ... Setting up libnsl2:amd64 (1.3.0-3+b2) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-1) ... Setting up python3.12 (3.12.7-1) ... Setting up debhelper (13.20) ... Setting up libpython3.12t64:amd64 (3.12.7-1) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up libpython3.12-dev:amd64 (3.12.7-1) ... Setting up python3-distlib (0.3.9-1) ... Setting up python3-zipp (3.20.2-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-markupsafe (2.1.5-1+b1) ... Setting up python3-wheel (0.44.0-2) ... Setting up python3-platformdirs (4.3.6-1) ... Setting up python3-roman (4.2-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.1-1) ... Setting up python3-wcwidth (0.2.13+dfsg1-1) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-typeshed (0.0~git20231111.6764465-3) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up python3-idna (3.8-2) ... Setting up python3.12-dev (3.12.7-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-traitlets (5.14.3+really5.14.3-1) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-ptyprocess (0.7.0-5) ... Setting up python3-prompt-toolkit (3.0.48-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-pure-eval (0.2.2-2) ... Setting up python3-filelock (3.16.1-1) ... Setting up python3-zombie-imp (0.0.2-2) ... Setting up libpython3-dev:amd64 (3.12.6-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-parso (0.8.3-1) ... Setting up python3-defusedxml (0.7.1-2) ... Setting up python3-asttokens (2.4.1-2) ... Setting up python3-charset-normalizer (3.4.0-1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up python3-typeguard (4.3.0-1) ... Setting up python3-virtualenv (20.27.0+ds-1) ... Setting up python3-matplotlib-inline (0.1.6-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-executing (2.1.0-0.1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pexpect (4.9-3) ... Setting up python3-dev (3.12.6-1) ... Setting up cython3-legacy (0.29.37-2+b1) ... Setting up python3-stack-data (0.6.3-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-jedi (0.19.1+ds1-1) ... Setting up python3-babel (2.14.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-ipython (8.20.0-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up ipython3 (8.20.0-1) ... Setting up dh-python (6.20241024) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up python3-sphinx (7.4.7-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/obitools-1.2.13+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../obitools_1.2.13+dfsg-9_source.changes dpkg-buildpackage: info: source package obitools dpkg-buildpackage: info: source version 1.2.13+dfsg-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/obitools-1.2.13+dfsg' # skip it make[1]: Leaving directory '/build/reproducible-path/obitools-1.2.13+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/obitools-1.2.13+dfsg' dh_clean rm -rf build rm -f doc/sphinx/build_dir.txt rm -rf src/OBITools.egg-info make[1]: Leaving directory '/build/reproducible-path/obitools-1.2.13+dfsg' debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /build/reproducible-path/obitools-1.2.13+dfsg/distutils.ext/obidistutils/serenity/snake.py:7: SyntaxWarning: invalid escape sequence '\ ' snake =""" /build/reproducible-path/obitools-1.2.13+dfsg/distutils.ext/obidistutils/command/build_scripts.py:21: SyntaxWarning: invalid escape sequence '\#' """Copy each script listed in 'self.scripts'; if it's marked as a ['src/obitools/_obitools.pyx'] ['src/obitools/format/_format.pyx'] ['src/obitools/format/genericparser/_genericparser.pyx'] ['src/obitools/utils/_utils.pyx'] ['src/obitools/fastq/_fastq.pyx'] ['src/obitools/word/_binary.pyx'] @@@@> ['src/obitools/word/_readindex.h'] ['src/obitools/word/_readindex.pyx'] ['src/obitools/align/_assemble.pyx'] @@@@> ['src/obitools/align/_lcs.h'] ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.4.c'] ['src/obitools/align/_gprofilenws.pyx'] ['src/obitools/align/_qsassemble.pyx'] ['src/obitools/align/_nws.pyx'] ['src/obitools/align/_dynamic.pyx'] @@@@> ['src/obitools/align/_sse.h'] ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] ['src/obitools/align/_freeendgapfm.pyx'] ['src/obitools/align/_freeendgap.pyx'] ['src/obitools/align/_profilenws.pyx'] ['src/obitools/align/_qsrassemble.pyx'] ['src/obitools/align/_rassemble.pyx'] ['src/obitools/align/_codonnws.pyx'] ['src/obitools/align/_nwsdnabyprot.pyx'] ['src/obitools/tools/_solexapairend.pyx'] ['src/obitools/options/_options.pyx'] ['src/obitools/options/_bioseqfilter.pyx'] ['src/obitools/fasta/_fasta.pyx'] ['src/obitools/profile/_profile.pyx'] running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build ['src/obitools/_obitools.pyx'] ['src/obitools/format/_format.pyx'] ['src/obitools/format/genericparser/_genericparser.pyx'] ['src/obitools/utils/_utils.pyx'] ['src/obitools/fastq/_fastq.pyx'] ['src/obitools/word/_binary.pyx'] @@@@> ['src/obitools/word/_readindex.h'] ['src/obitools/word/_readindex.pyx'] ['src/obitools/align/_assemble.pyx'] @@@@> ['src/obitools/align/_lcs.h'] ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.4.c'] ['src/obitools/align/_gprofilenws.pyx'] ['src/obitools/align/_qsassemble.pyx'] ['src/obitools/align/_nws.pyx'] ['src/obitools/align/_dynamic.pyx'] @@@@> ['src/obitools/align/_sse.h'] ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] ['src/obitools/align/_freeendgapfm.pyx'] ['src/obitools/align/_freeendgap.pyx'] ['src/obitools/align/_profilenws.pyx'] ['src/obitools/align/_qsrassemble.pyx'] ['src/obitools/align/_rassemble.pyx'] ['src/obitools/align/_codonnws.pyx'] ['src/obitools/align/_nwsdnabyprot.pyx'] ['src/obitools/tools/_solexapairend.pyx'] ['src/obitools/options/_options.pyx'] ['src/obitools/options/_bioseqfilter.pyx'] ['src/obitools/fasta/_fasta.pyx'] ['src/obitools/profile/_profile.pyx'] running build Running obidistutils build process running littlebigman creating build/temp.linux-x86_64-cpython-312 building 'littlebigman' program creating build/temp.linux-x86_64-cpython-312/distutils.ext/src x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c distutils.ext/src/littlebigman.c -o build/temp.linux-x86_64-cpython-312/distutils.ext/src/littlebigman.o -msse2 distutils.ext/src/littlebigman.c: In function 'main': distutils.ext/src/littlebigman.c:20:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 20 | else | ^~~~ distutils.ext/src/littlebigman.c:23:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 23 | return 0; | ^~~~~~ x86_64-linux-gnu-gcc build/temp.linux-x86_64-cpython-312/distutils.ext/src/littlebigman.o -o build/temp.linux-x86_64-cpython-312/littlebigman Your CPU is in mode : b'-DLITTLE_END' running build_py creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools copying src/obitools/gzip.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools copying src/obitools/version.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools copying src/obitools/solexaPairEnd.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools copying src/obitools/decorator.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools copying src/obitools/SVGdraw.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools copying src/obitools/zipfile.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools copying src/obitools/sample.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools copying src/obitools/svg.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools copying src/obitools/fast.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools copying src/obitools/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools copying src/obitools/collections.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage copying src/obitools/barcodecoverage/calcBc.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage copying src/obitools/barcodecoverage/drawBcTree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage copying src/obitools/barcodecoverage/findErrors.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage copying src/obitools/barcodecoverage/writeBcTree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage copying src/obitools/barcodecoverage/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage copying src/obitools/barcodecoverage/readFiles.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/dnahash copying src/obitools/dnahash/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/dnahash creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree copying src/obitools/tree/layout.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree copying src/obitools/tree/svg.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree copying src/obitools/tree/unrooted.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree copying src/obitools/tree/dot.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree copying src/obitools/tree/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree copying src/obitools/tree/newick.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format copying src/obitools/format/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format copying src/obitools/format/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/fastq.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/fnaqual.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/fasta.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/embl.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/genbank.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/tagmatcher.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/ontology copying src/obitools/format/ontology/go_obo.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/ontology copying src/obitools/format/ontology/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/ontology creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/genericparser copying src/obitools/format/genericparser/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/genericparser creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils copying src/obitools/utils/bioseq.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils copying src/obitools/utils/crc64.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils copying src/obitools/utils/iterator.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils copying src/obitools/utils/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecotag copying src/obitools/ecotag/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecotag copying src/obitools/ecotag/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecotag creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/eutils copying src/obitools/eutils/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/eutils creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tagmatcher copying src/obitools/tagmatcher/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tagmatcher copying src/obitools/tagmatcher/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tagmatcher copying src/obitools/tagmatcher/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tagmatcher creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fastq copying src/obitools/fastq/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fastq creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/table copying src/obitools/table/csv.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/table copying src/obitools/table/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/table creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/unit copying src/obitools/unit/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/unit creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/unit/obitools copying src/obitools/unit/obitools/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/unit/obitools creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual copying src/obitools/fnaqual/quality.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual copying src/obitools/fnaqual/fasta.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual copying src/obitools/fnaqual/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo copying src/obitools/obo/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo copying src/obitools/obo/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/go copying src/obitools/obo/go/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/go copying src/obitools/obo/go/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/go creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word copying src/obitools/word/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word copying src/obitools/word/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word copying src/obitools/word/predicate.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align copying src/obitools/align/homopolymere.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align copying src/obitools/align/ssearch.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align copying src/obitools/align/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/statistics copying src/obitools/statistics/hypergeometric.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/statistics copying src/obitools/statistics/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/statistics copying src/obitools/statistics/noncentralhypergeo.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/statistics creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/solexa copying src/obitools/solexa/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/solexa creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/blast copying src/obitools/blast/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/blast creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location copying src/obitools/location/feature.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location copying src/obitools/location/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tools copying src/obitools/tools/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tools copying src/obitools/tools/solexapairend.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tools creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/sequenceencoder copying src/obitools/sequenceencoder/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/sequenceencoder creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/thermo copying src/obitools/thermo/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/thermo creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas copying src/obitools/obischemas/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas copying src/obitools/obischemas/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/kb copying src/obitools/obischemas/kb/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/kb copying src/obitools/obischemas/kb/extern.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/kb creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/interactive copying src/obitools/interactive/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/interactive creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb copying src/obitools/seqdb/dnaparser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb copying src/obitools/seqdb/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/embl copying src/obitools/seqdb/embl/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/embl copying src/obitools/seqdb/embl/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/embl creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/blastdb copying src/obitools/seqdb/blastdb/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/blastdb creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank copying src/obitools/seqdb/genbank/ncbi.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank copying src/obitools/seqdb/genbank/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank copying src/obitools/seqdb/genbank/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph copying src/obitools/graph/dag.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph copying src/obitools/graph/rootedtree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph copying src/obitools/graph/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph copying src/obitools/graph/tree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms copying src/obitools/graph/algorithms/clique.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms copying src/obitools/graph/algorithms/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms copying src/obitools/graph/algorithms/component.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms copying src/obitools/graph/algorithms/compact.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/layout copying src/obitools/graph/layout/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/layout copying src/obitools/graph/layout/radialtree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/layout creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/alignment copying src/obitools/alignment/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/alignment copying src/obitools/alignment/ace.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/alignment creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances copying src/obitools/distances/phylip.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances copying src/obitools/distances/observed.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances copying src/obitools/distances/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances copying src/obitools/distances/r.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr copying src/obitools/ecopcr/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr copying src/obitools/ecopcr/annotation.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr copying src/obitools/ecopcr/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr copying src/obitools/ecopcr/sequence.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr copying src/obitools/ecopcr/taxonomy.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/goa copying src/obitools/goa/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/goa copying src/obitools/goa/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/goa creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options copying src/obitools/options/bioseqedittag.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options copying src/obitools/options/bioseqcutter.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options copying src/obitools/options/taxonomyfilter.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options copying src/obitools/options/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options copying src/obitools/options/bioseqfilter.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fasta copying src/obitools/fasta/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fasta creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/profile copying src/obitools/profile/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/profile creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/carto copying src/obitools/carto/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/carto creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode copying src/obitools/ecobarcode/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode copying src/obitools/ecobarcode/ecotag.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode copying src/obitools/ecobarcode/databases.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode copying src/obitools/ecobarcode/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode copying src/obitools/ecobarcode/rawdata.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode copying src/obitools/ecobarcode/taxonomy.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/metabarcoding copying src/obitools/metabarcoding/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/metabarcoding copying src/obitools/metabarcoding/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/metabarcoding creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/phylogeny copying src/obitools/phylogeny/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/phylogeny copying src/obitools/phylogeny/newick.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/phylogeny creating /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/parallel copying src/obitools/parallel/jobqueue.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/parallel copying src/obitools/parallel/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/parallel running build_ext obitools._obitools src/obitools/_obitools.pyx ok obitools.format._format src/obitools/format/_format.pyx ok obitools.format.genericparser._genericparser src/obitools/format/genericparser/_genericparser.pyx ok obitools.utils._utils src/obitools/utils/_utils.pyx ok obitools.fastq._fastq src/obitools/fastq/_fastq.pyx ok obitools.word._binary src/obitools/word/_binary.pyx ok obitools.word._readindex src/obitools/word/_readindex.pyx ok obitools.align._assemble src/obitools/align/_assemble.pyx ok obitools.align._lcs src/obitools/align/_lcs.pyx ok obitools.align._lcs src/obitools/align/_lcs.ext.3.c ok obitools.align._lcs src/obitools/align/_lcs.ext.2.c ok obitools.align._lcs src/obitools/align/_lcs.ext.1.c ok obitools.align._lcs src/obitools/align/_lcs.ext.4.c ok obitools.align._gprofilenws src/obitools/align/_gprofilenws.pyx ok obitools.align._qsassemble src/obitools/align/_qsassemble.pyx ok obitools.align._nws src/obitools/align/_nws.pyx ok obitools.align._dynamic src/obitools/align/_dynamic.pyx ok obitools.align._upperbond src/obitools/align/_upperbond.pyx ok obitools.align._upperbond src/obitools/align/_upperbond.ext.1.c ok obitools.align._freeendgapfm src/obitools/align/_freeendgapfm.pyx ok obitools.align._freeendgap src/obitools/align/_freeendgap.pyx ok obitools.align._profilenws src/obitools/align/_profilenws.pyx ok obitools.align._qsrassemble src/obitools/align/_qsrassemble.pyx ok obitools.align._rassemble src/obitools/align/_rassemble.pyx ok obitools.align._codonnws src/obitools/align/_codonnws.pyx ok obitools.align._nwsdnabyprot src/obitools/align/_nwsdnabyprot.pyx ok obitools.tools._solexapairend src/obitools/tools/_solexapairend.pyx ok obitools.options._options src/obitools/options/_options.pyx ok obitools.options._bioseqfilter src/obitools/options/_bioseqfilter.pyx ok obitools.fasta._fasta src/obitools/fasta/_fasta.pyx ok obitools.profile._profile src/obitools/profile/_profile.pyx ok #####> ['src/obitools/_obitools.pyx'] cythoning src/obitools/_obitools.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/_obitools.c creating build/temp.linux-x86_64-cpython-312/pyrex/obitools building 'obitools._obitools' extension creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/_obitools.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/_obitools.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/_obitools.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/_obitools.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/format/_format.pyx'] cythoning src/obitools/format/_format.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/_format.c creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/format building 'obitools.format._format' extension creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/format x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/_format.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/_format.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/_format.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/_format.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/format/genericparser/_genericparser.pyx'] cythoning src/obitools/format/genericparser/_genericparser.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/genericparser/_genericparser.c creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/genericparser building 'obitools.format.genericparser._genericparser' extension creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/genericparser x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/genericparser/_genericparser.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/genericparser/_genericparser.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/genericparser/_genericparser.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/genericparser/_genericparser.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/utils/_utils.pyx'] cythoning src/obitools/utils/_utils.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.c creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils building 'obitools.utils._utils' extension creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.o build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.c: In function '__pyx_f_8obitools_5utils_6_utils_progressBar': build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.c:3864:57: warning: field precision specifier '.*' expects argument of type 'int', but argument 5 has type 'long long unsigned int' [-Wformat=] 3864 | ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %d days %02d:%02d:%02d"), ((char *)__pyx_t_13), (__pyx_v_percent * 100.0), __pyx_v_fraction, __pyx_v_diese, (__pyx_v_wheel[__pyx_v_arrow]), (50 - __pyx_v_fraction), __pyx_v_spaces, __pyx_v_days, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); | ~~^~ ~~~~~~~~~~~~~~~~ | | | | int long long unsigned int build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.c:3864:63: warning: field precision specifier '.*' expects argument of type 'int', but argument 8 has type 'long long unsigned int' [-Wformat=] 3864 | ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %d days %02d:%02d:%02d"), ((char *)__pyx_t_13), (__pyx_v_percent * 100.0), __pyx_v_fraction, __pyx_v_diese, (__pyx_v_wheel[__pyx_v_arrow]), (50 - __pyx_v_fraction), __pyx_v_spaces, __pyx_v_days, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); | ~~^~ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long long unsigned int build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.c:3905:57: warning: field precision specifier '.*' expects argument of type 'int', but argument 5 has type 'long long unsigned int' [-Wformat=] 3905 | ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %02d:%02d:%02d"), ((char *)__pyx_t_13), (__pyx_v_percent * 100.), __pyx_v_fraction, __pyx_v_diese, (__pyx_v_wheel[__pyx_v_arrow]), (50 - __pyx_v_fraction), __pyx_v_spaces, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); | ~~^~ ~~~~~~~~~~~~~~~~ | | | | int long long unsigned int build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.c:3905:63: warning: field precision specifier '.*' expects argument of type 'int', but argument 8 has type 'long long unsigned int' [-Wformat=] 3905 | ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %02d:%02d:%02d"), ((char *)__pyx_t_13), (__pyx_v_percent * 100.), __pyx_v_fraction, __pyx_v_diese, (__pyx_v_wheel[__pyx_v_arrow]), (50 - __pyx_v_fraction), __pyx_v_spaces, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); | ~~^~ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long long unsigned int x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/_utils.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/fastq/_fastq.pyx'] cythoning src/obitools/fastq/_fastq.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/fastq/_fastq.c creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/fastq building 'obitools.fastq._fastq' extension creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/fastq x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/fastq/_fastq.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/fastq/_fastq.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/fastq/_fastq.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fastq/_fastq.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/word/_binary.pyx'] cythoning src/obitools/word/_binary.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_binary.c creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/word building 'obitools.word._binary' extension creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/word x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_binary.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_binary.o build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_binary.c: In function '__pyx_f_8obitools_4word_7_binary_bin2str': build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_binary.c:1841:33: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] 1841 | for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) { | ^ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_binary.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word/_binary.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/word/_readindex.pyx'] cythoning src/obitools/word/_readindex.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c building 'obitools.word._readindex' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/word -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.o -msse2 build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c: In function '__pyx_gb_8obitools_4word_10_readindex_9ReadIndex_14generator': build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c:6589:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 6589 | for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) { | ^ build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c: In function '__pyx_gb_8obitools_4word_10_readindex_9ReadIndex_17generator1': build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c:6787:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 6787 | for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) { | ^ build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c: In function '__pyx_pf_8obitools_4word_10_readindex_9ReadIndex_8load': build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c:5495:10: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 5495 | (void)(fread((&__pyx_v_ltbuffer), (sizeof(size_t)), 1, __pyx_v_f)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c:5564:10: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 5564 | (void)(fread(__pyx_v_tcbuffer, 1, __pyx_v_ltbuffer, __pyx_v_f)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c:5749:10: warning: pointer '__pyx_v_f' may be used after 'fclose' [-Wuse-after-free] 5749 | (void)(fclose(__pyx_v_f)); | ~^~~~~~~~~~~~~~~~~~ build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c:5616:10: note: call to 'fclose' here 5616 | (void)(fclose(__pyx_v_f)); | ~^~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word/_readindex.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/align/_assemble.pyx'] cythoning src/obitools/align/_assemble.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_assemble.c creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/align building 'obitools.align._assemble' extension creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_assemble.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_assemble.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_assemble.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_assemble.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.4.c'] cythoning src/obitools/align/_lcs.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_lcs.c building 'obitools.align._lcs' extension creating build/temp.linux-x86_64-cpython-312/src/obitools/align x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_lcs.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_lcs.o -msse2 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.12 -c src/obitools/align/_lcs.ext.1.c -o build/temp.linux-x86_64-cpython-312/src/obitools/align/_lcs.ext.1.o -msse2 src/obitools/align/_lcs.ext.1.c: In function 'simpleLCS': src/obitools/align/_lcs.ext.1.c:166:16: warning: 'sl' may be used uninitialized [-Wmaybe-uninitialized] 166 | return lcs; | ^~~ src/obitools/align/_lcs.ext.1.c:102:17: note: 'sl' was declared here 102 | int32_t sl,su,sd; | ^~ src/obitools/align/_lcs.ext.1.c:159:25: warning: 'pl' may be used uninitialized [-Wmaybe-uninitialized] 159 | if(lpath) *lpath=pl; | ~~~~~~^~~ src/obitools/align/_lcs.ext.1.c:103:17: note: 'pl' was declared here 103 | int32_t pl,pu,pd; | ^~ x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.12 -c src/obitools/align/_lcs.ext.2.c -o build/temp.linux-x86_64-cpython-312/src/obitools/align/_lcs.ext.2.o -msse2 In file included from src/obitools/align/_lcs.ext.2.c:34: src/obitools/align/_lcs_fast.h:8:14: warning: 'printreg' defined but not used [-Wunused-function] 8 | static void printreg(VTYPE r) | ^~~~~~~~ In file included from /usr/lib/gcc/x86_64-linux-gnu/14/include/xmmintrin.h:1322, from src/obitools/align/_sse.h:5, from src/obitools/align/_lcs.h:1, from src/obitools/align/_lcs.ext.2.c:1: In function '_mm_extract_epi16', inlined from 'fastLCSScore16' at src/obitools/align/_lcs_fast.h:361:43: /usr/lib/gcc/x86_64-linux-gnu/14/include/emmintrin.h:1396:27: warning: 'scurrent' may be used uninitialized [-Wmaybe-uninitialized] 1396 | return (unsigned short) __builtin_ia32_vec_ext_v8hi ((__v8hi)__A, __N); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/obitools/align/_lcs_fast.h: In function 'fastLCSScore16': src/obitools/align/_lcs_fast.h:132:16: note: 'scurrent' was declared here 132 | VTYPE scurrent; | ^~~~~~~~ In function '_mm_and_si128', inlined from 'fastLCSScore16' at src/obitools/align/_lcs_fast.h:540:15: /usr/lib/gcc/x86_64-linux-gnu/14/include/emmintrin.h:1317:35: warning: 'sleft' may be used uninitialized [-Wmaybe-uninitialized] 1317 | return (__m128i) ((__v2du)__A & (__v2du)__B); | ^~~~~~~~~~~ src/obitools/align/_lcs_fast.h: In function 'fastLCSScore16': src/obitools/align/_lcs_fast.h:134:16: note: 'sleft' was declared here 134 | VTYPE sleft; | ^~~~~ x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.12 -c src/obitools/align/_lcs.ext.3.c -o build/temp.linux-x86_64-cpython-312/src/obitools/align/_lcs.ext.3.o -msse2 In file included from src/obitools/align/_lcs.ext.3.c:34: src/obitools/align/_lcs_fast.h:8:14: warning: 'printreg' defined but not used [-Wunused-function] 8 | static void printreg(VTYPE r) | ^~~~~~~~ In file included from /usr/lib/gcc/x86_64-linux-gnu/14/include/xmmintrin.h:1322, from src/obitools/align/_sse.h:5, from src/obitools/align/_lcs.h:1, from src/obitools/align/_lcs.ext.3.c:1: In function '_mm_extract_epi16', inlined from '_s2_extract_epi8' at src/obitools/align/_sse.h:77:12, inlined from 'fastLCSScore8' at src/obitools/align/_lcs_fast.h:516:45: /usr/lib/gcc/x86_64-linux-gnu/14/include/emmintrin.h:1396:27: warning: 'scurrent' may be used uninitialized [-Wmaybe-uninitialized] 1396 | return (unsigned short) __builtin_ia32_vec_ext_v8hi ((__v8hi)__A, __N); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/obitools/align/_lcs_fast.h: In function 'fastLCSScore8': src/obitools/align/_lcs_fast.h:132:16: note: 'scurrent' was declared here 132 | VTYPE scurrent; | ^~~~~~~~ x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.12 -c src/obitools/align/_lcs.ext.4.c -o build/temp.linux-x86_64-cpython-312/src/obitools/align/_lcs.ext.4.o -msse2 src/obitools/align/_lcs.ext.4.c: In function 'buildTable': src/obitools/align/_lcs.ext.4.c:96:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] 96 | if (zero.c[0]+zero.c[1]+zero.c[2]+zero.c[3]==0) | ^ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_lcs.o build/temp.linux-x86_64-cpython-312/src/obitools/align/_lcs.ext.1.o build/temp.linux-x86_64-cpython-312/src/obitools/align/_lcs.ext.2.o build/temp.linux-x86_64-cpython-312/src/obitools/align/_lcs.ext.3.o build/temp.linux-x86_64-cpython-312/src/obitools/align/_lcs.ext.4.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_lcs.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/align/_gprofilenws.pyx'] cythoning src/obitools/align/_gprofilenws.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_gprofilenws.c building 'obitools.align._gprofilenws' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_gprofilenws.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_gprofilenws.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_gprofilenws.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_gprofilenws.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/align/_qsassemble.pyx'] cythoning src/obitools/align/_qsassemble.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsassemble.c building 'obitools.align._qsassemble' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsassemble.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsassemble.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsassemble.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_qsassemble.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/align/_nws.pyx'] cythoning src/obitools/align/_nws.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nws.c building 'obitools.align._nws' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nws.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nws.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nws.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_nws.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/align/_dynamic.pyx'] cythoning src/obitools/align/_dynamic.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_dynamic.c building 'obitools.align._dynamic' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_dynamic.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_dynamic.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_dynamic.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_dynamic.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] cythoning src/obitools/align/_upperbond.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_upperbond.c building 'obitools.align._upperbond' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_upperbond.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_upperbond.o -msse2 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.12 -c src/obitools/align/_upperbond.ext.1.c -o build/temp.linux-x86_64-cpython-312/src/obitools/align/_upperbond.ext.1.o -msse2 src/obitools/align/_upperbond.ext.1.c: In function 'buildTable': src/obitools/align/_upperbond.ext.1.c:96:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] 96 | if (zero.c[0]+zero.c[1]+zero.c[2]+zero.c[3]==0) | ^ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_upperbond.o build/temp.linux-x86_64-cpython-312/src/obitools/align/_upperbond.ext.1.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_upperbond.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/align/_freeendgapfm.pyx'] cythoning src/obitools/align/_freeendgapfm.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_freeendgapfm.c building 'obitools.align._freeendgapfm' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_freeendgapfm.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_freeendgapfm.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_freeendgapfm.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_freeendgapfm.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/align/_freeendgap.pyx'] cythoning src/obitools/align/_freeendgap.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_freeendgap.c building 'obitools.align._freeendgap' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_freeendgap.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_freeendgap.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_freeendgap.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_freeendgap.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/align/_profilenws.pyx'] cythoning src/obitools/align/_profilenws.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_profilenws.c building 'obitools.align._profilenws' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_profilenws.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_profilenws.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_profilenws.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_profilenws.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/align/_qsrassemble.pyx'] cythoning src/obitools/align/_qsrassemble.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsrassemble.c building 'obitools.align._qsrassemble' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsrassemble.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsrassemble.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsrassemble.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_qsrassemble.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/align/_rassemble.pyx'] cythoning src/obitools/align/_rassemble.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_rassemble.c building 'obitools.align._rassemble' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_rassemble.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_rassemble.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_rassemble.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_rassemble.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/align/_codonnws.pyx'] cythoning src/obitools/align/_codonnws.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_codonnws.c building 'obitools.align._codonnws' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_codonnws.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_codonnws.o build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_codonnws.c: In function '__pyx_f_8obitools_5align_9_codonnws_8CodonNWS_backtrack': build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_codonnws.c:26582:104: warning: '__pyx_v_p' may be used uninitialized [-Wmaybe-uninitialized] 26582 | (__pyx_v_self->__pyx_base.__pyx_base.path->path[__pyx_v_self->__pyx_base.__pyx_base.path->length]) = __pyx_v_p; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_codonnws.c:26192:7: note: '__pyx_v_p' was declared here 26192 | int __pyx_v_p; | ^~~~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_codonnws.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_codonnws.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/align/_nwsdnabyprot.pyx'] cythoning src/obitools/align/_nwsdnabyprot.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nwsdnabyprot.c building 'obitools.align._nwsdnabyprot' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nwsdnabyprot.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nwsdnabyprot.o build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nwsdnabyprot.c: In function '__pyx_f_8obitools_5align_13_nwsdnabyprot_12NWSDNAByProt_doAlignment': build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nwsdnabyprot.c:4997:29: warning: '__pyx_v_smatrix' may be used uninitialized [-Wmaybe-uninitialized] 4997 | __pyx_r = (__pyx_v_smatrix[__pyx_v_idx]).score; | ^ build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nwsdnabyprot.c:4016:67: note: '__pyx_v_smatrix' was declared here 4016 | struct __pyx_t_8obitools_5align_13_nwsdnabyprot_CodonAlignCell *__pyx_v_smatrix; | ^~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nwsdnabyprot.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_nwsdnabyprot.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/tools/_solexapairend.pyx'] cythoning src/obitools/tools/_solexapairend.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/tools/_solexapairend.c creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/tools building 'obitools.tools._solexapairend' extension creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/tools x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/tools/_solexapairend.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/tools/_solexapairend.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/tools/_solexapairend.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tools/_solexapairend.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/options/_options.pyx'] cythoning src/obitools/options/_options.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/options/_options.c creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/options building 'obitools.options._options' extension creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/options x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/options/_options.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/options/_options.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/options/_options.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options/_options.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/options/_bioseqfilter.pyx'] cythoning src/obitools/options/_bioseqfilter.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/options/_bioseqfilter.c building 'obitools.options._bioseqfilter' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/options/_bioseqfilter.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/options/_bioseqfilter.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/options/_bioseqfilter.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options/_bioseqfilter.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/fasta/_fasta.pyx'] cythoning src/obitools/fasta/_fasta.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/fasta/_fasta.c creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/fasta building 'obitools.fasta._fasta' extension creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/fasta x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/fasta/_fasta.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/fasta/_fasta.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/fasta/_fasta.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fasta/_fasta.cpython-312-x86_64-linux-gnu.so #####> ['src/obitools/profile/_profile.pyx'] cythoning src/obitools/profile/_profile.pyx to build/temp.linux-x86_64-cpython-312/pyrex/obitools/profile/_profile.c creating build/temp.linux-x86_64-cpython-312/pyrex/obitools/profile building 'obitools.profile._profile' extension creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/profile x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/pyrex/obitools/profile/_profile.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/profile/_profile.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/pyrex/obitools/profile/_profile.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/profile/_profile.cpython-312-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.12 creating build/raw_scripts Store the raw script src/ecotaxstat.py -> build/raw_scripts/ecotaxstat.py copying src/ecotaxstat.py -> build/raw_scripts copying and adjusting src/ecotaxstat.py -> build/scripts-3.12 Store the raw script src/illuminapairedend.py -> build/raw_scripts/illuminapairedend.py copying src/illuminapairedend.py -> build/raw_scripts copying and adjusting src/illuminapairedend.py -> build/scripts-3.12 Store the raw script src/obicut.py -> build/raw_scripts/obicut.py copying src/obicut.py -> build/raw_scripts copying and adjusting src/obicut.py -> build/scripts-3.12 Store the raw script src/obicount.py -> build/raw_scripts/obicount.py copying src/obicount.py -> build/raw_scripts copying and adjusting src/obicount.py -> build/scripts-3.12 Store the raw script src/obisample.py -> build/raw_scripts/obisample.py copying src/obisample.py -> build/raw_scripts copying and adjusting src/obisample.py -> build/scripts-3.12 Store the raw script src/obisilva.py -> build/raw_scripts/obisilva.py copying src/obisilva.py -> build/raw_scripts copying and adjusting src/obisilva.py -> build/scripts-3.12 Store the raw script src/obiextract.py -> build/raw_scripts/obiextract.py copying src/obiextract.py -> build/raw_scripts copying and adjusting src/obiextract.py -> build/scripts-3.12 Store the raw script src/ecotag.py -> build/raw_scripts/ecotag.py copying src/ecotag.py -> build/raw_scripts copying and adjusting src/ecotag.py -> build/scripts-3.12 Store the raw script src/ngsfilter.py -> build/raw_scripts/ngsfilter.py copying src/ngsfilter.py -> build/raw_scripts copying and adjusting src/ngsfilter.py -> build/scripts-3.12 Store the raw script src/obiselect.py -> build/raw_scripts/obiselect.py copying src/obiselect.py -> build/raw_scripts copying and adjusting src/obiselect.py -> build/scripts-3.12 Store the raw script src/obipr2.py -> build/raw_scripts/obipr2.py copying src/obipr2.py -> build/raw_scripts copying and adjusting src/obipr2.py -> build/scripts-3.12 Store the raw script src/obiaddtaxids.py -> build/raw_scripts/obiaddtaxids.py copying src/obiaddtaxids.py -> build/raw_scripts copying and adjusting src/obiaddtaxids.py -> build/scripts-3.12 Store the raw script src/obitail.py -> build/raw_scripts/obitail.py copying src/obitail.py -> build/raw_scripts copying and adjusting src/obitail.py -> build/scripts-3.12 Store the raw script src/ali2consensus.py -> build/raw_scripts/ali2consensus.py copying src/ali2consensus.py -> build/raw_scripts copying and adjusting src/ali2consensus.py -> build/scripts-3.12 Store the raw script src/obitab.py -> build/raw_scripts/obitab.py copying src/obitab.py -> build/raw_scripts copying and adjusting src/obitab.py -> build/scripts-3.12 Store the raw script src/obiuniq.py -> build/raw_scripts/obiuniq.py copying src/obiuniq.py -> build/raw_scripts copying and adjusting src/obiuniq.py -> build/scripts-3.12 Store the raw script src/obiannotate.py -> build/raw_scripts/obiannotate.py copying src/obiannotate.py -> build/raw_scripts copying and adjusting src/obiannotate.py -> build/scripts-3.12 Store the raw script src/obistat.py -> build/raw_scripts/obistat.py copying src/obistat.py -> build/raw_scripts copying and adjusting src/obistat.py -> build/scripts-3.12 Store the raw script src/obigrep.py -> build/raw_scripts/obigrep.py copying src/obigrep.py -> build/raw_scripts copying and adjusting src/obigrep.py -> build/scripts-3.12 Store the raw script src/ecotaxspecificity.py -> build/raw_scripts/ecotaxspecificity.py copying src/ecotaxspecificity.py -> build/raw_scripts copying and adjusting src/ecotaxspecificity.py -> build/scripts-3.12 Store the raw script src/obisplit.py -> build/raw_scripts/obisplit.py copying src/obisplit.py -> build/raw_scripts copying and adjusting src/obisplit.py -> build/scripts-3.12 Store the raw script src/obisubset.py -> build/raw_scripts/obisubset.py copying src/obisubset.py -> build/raw_scripts copying and adjusting src/obisubset.py -> build/scripts-3.12 Store the raw script src/obihead.py -> build/raw_scripts/obihead.py copying src/obihead.py -> build/raw_scripts copying and adjusting src/obihead.py -> build/scripts-3.12 Store the raw script src/obisort.py -> build/raw_scripts/obisort.py copying src/obisort.py -> build/raw_scripts copying and adjusting src/obisort.py -> build/scripts-3.12 Store the raw script src/extractreads2.py -> build/raw_scripts/extractreads2.py copying src/extractreads2.py -> build/raw_scripts copying and adjusting src/extractreads2.py -> build/scripts-3.12 Store the raw script src/obijoinpairedend.py -> build/raw_scripts/obijoinpairedend.py copying src/obijoinpairedend.py -> build/raw_scripts copying and adjusting src/obijoinpairedend.py -> build/scripts-3.12 Store the raw script src/obiconvert.py -> build/raw_scripts/obiconvert.py copying src/obiconvert.py -> build/raw_scripts copying and adjusting src/obiconvert.py -> build/scripts-3.12 Store the raw script src/obidistribute.py -> build/raw_scripts/obidistribute.py copying src/obidistribute.py -> build/raw_scripts copying and adjusting src/obidistribute.py -> build/scripts-3.12 Store the raw script src/obitaxonomy.py -> build/raw_scripts/obitaxonomy.py copying src/obitaxonomy.py -> build/raw_scripts copying and adjusting src/obitaxonomy.py -> build/scripts-3.12 Store the raw script src/ecodbtaxstat.py -> build/raw_scripts/ecodbtaxstat.py copying src/ecodbtaxstat.py -> build/raw_scripts copying and adjusting src/ecodbtaxstat.py -> build/scripts-3.12 Store the raw script src/obiclean.py -> build/raw_scripts/obiclean.py copying src/obiclean.py -> build/raw_scripts copying and adjusting src/obiclean.py -> build/scripts-3.12 Store the raw script src/obicomplement.py -> build/raw_scripts/obicomplement.py copying src/obicomplement.py -> build/raw_scripts copying and adjusting src/obicomplement.py -> build/scripts-3.12 Store the raw script src/extractreads.py -> build/raw_scripts/extractreads.py copying src/extractreads.py -> build/raw_scripts copying and adjusting src/extractreads.py -> build/scripts-3.12 Store the raw script src/oligotag.py -> build/raw_scripts/oligotag.py copying src/oligotag.py -> build/raw_scripts copying and adjusting src/oligotag.py -> build/scripts-3.12 changing mode of build/scripts-3.12/ecotaxstat from 644 to 755 changing mode of build/scripts-3.12/illuminapairedend from 644 to 755 changing mode of build/scripts-3.12/obicut from 644 to 755 changing mode of build/scripts-3.12/obicount from 644 to 755 changing mode of build/scripts-3.12/obisample from 644 to 755 changing mode of build/scripts-3.12/obisilva from 644 to 755 changing mode of build/scripts-3.12/obiextract from 644 to 755 changing mode of build/scripts-3.12/ecotag from 644 to 755 changing mode of build/scripts-3.12/ngsfilter from 644 to 755 changing mode of build/scripts-3.12/obiselect from 644 to 755 changing mode of build/scripts-3.12/obipr2 from 644 to 755 changing mode of build/scripts-3.12/obiaddtaxids from 644 to 755 changing mode of build/scripts-3.12/obitail from 644 to 755 changing mode of build/scripts-3.12/ali2consensus from 644 to 755 changing mode of build/scripts-3.12/obitab from 644 to 755 changing mode of build/scripts-3.12/obiuniq from 644 to 755 changing mode of build/scripts-3.12/obiannotate from 644 to 755 changing mode of build/scripts-3.12/obistat from 644 to 755 changing mode of build/scripts-3.12/obigrep from 644 to 755 changing mode of build/scripts-3.12/ecotaxspecificity from 644 to 755 changing mode of build/scripts-3.12/obisplit from 644 to 755 changing mode of build/scripts-3.12/obisubset from 644 to 755 changing mode of build/scripts-3.12/obihead from 644 to 755 changing mode of build/scripts-3.12/obisort from 644 to 755 changing mode of build/scripts-3.12/extractreads2 from 644 to 755 changing mode of build/scripts-3.12/obijoinpairedend from 644 to 755 changing mode of build/scripts-3.12/obiconvert from 644 to 755 changing mode of build/scripts-3.12/obidistribute from 644 to 755 changing mode of build/scripts-3.12/obitaxonomy from 644 to 755 changing mode of build/scripts-3.12/ecodbtaxstat from 644 to 755 changing mode of build/scripts-3.12/obiclean from 644 to 755 changing mode of build/scripts-3.12/obicomplement from 644 to 755 changing mode of build/scripts-3.12/extractreads from 644 to 755 changing mode of build/scripts-3.12/oligotag from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build; python3.12 -m unittest discover -v /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/__init__.py:192: SyntaxWarning: invalid escape sequence '\w' extraformat='([a-zA-Z]\w*) *= *([^;]+);'): /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location/__init__.py:479: SyntaxWarning: invalid escape sequence '\.' __simplelocparser = re.compile('(?P[0-9]+)(\.\.(?P>?)(?P[0-9]+))?') /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location/__init__.py:523: SyntaxWarning: invalid escape sequence '\.' _matchExternalRef = re.compile('[A-Za-z0-9_|]+(\.[0-9]+)?(?=:)') /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual/__init__.py:2: SyntaxWarning: invalid escape sequence '\s' fnaTag=' %s *= *([^\s]+)' /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location/feature.py:67: SyntaxWarning: invalid escape sequence '\S' _ftmatcher = re.compile('(?<=^ {5})\S+') /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location/feature.py:69: SyntaxWarning: invalid escape sequence '\s' _cleanloc = re.compile('[\s\n]+') testCreateSequenceQualifier (obitools.unit.obitools.AABioseqTest.testCreateSequenceQualifier) ... ok testDefinitionAttribute (obitools.unit.obitools.AABioseqTest.testDefinitionAttribute) test if definition attribute exists ... ok testIdAttribute (obitools.unit.obitools.AABioseqTest.testIdAttribute) test if id attribute exists ... ok testIdValue (obitools.unit.obitools.AABioseqTest.testIdValue) test if id attribute value is 'id1' ... ok testSequenceIsLowerCase (obitools.unit.obitools.AABioseqTest.testSequenceIsLowerCase) test if sequence is stored as lower case letter ... ok testSequenceQualifier (obitools.unit.obitools.AABioseqTest.testSequenceQualifier) test if the extra qualifier is present and its value is three. ... ok testCreateSequenceQualifier (obitools.unit.obitools.BioseqTest.testCreateSequenceQualifier) ... ok testDefinitionAttribute (obitools.unit.obitools.BioseqTest.testDefinitionAttribute) test if definition attribute exists ... ok testIdAttribute (obitools.unit.obitools.BioseqTest.testIdAttribute) test if id attribute exists ... ok testIdValue (obitools.unit.obitools.BioseqTest.testIdValue) test if id attribute value is 'id1' ... ok testSequenceIsLowerCase (obitools.unit.obitools.BioseqTest.testSequenceIsLowerCase) test if sequence is stored as lower case letter ... ok testSequenceQualifier (obitools.unit.obitools.BioseqTest.testSequenceQualifier) test if the extra qualifier is present and its value is three. ... ok testCreateSequenceQualifier (obitools.unit.obitools.NucBioseqTest.testCreateSequenceQualifier) ... ok testDefinitionAttribute (obitools.unit.obitools.NucBioseqTest.testDefinitionAttribute) test if definition attribute exists ... ok testIdAttribute (obitools.unit.obitools.NucBioseqTest.testIdAttribute) test if id attribute exists ... ok testIdValue (obitools.unit.obitools.NucBioseqTest.testIdValue) test if id attribute value is 'id1' ... ok testSequenceIsLowerCase (obitools.unit.obitools.NucBioseqTest.testSequenceIsLowerCase) test if sequence is stored as lower case letter ... ok testSequenceQualifier (obitools.unit.obitools.NucBioseqTest.testSequenceQualifier) test if the extra qualifier is present and its value is three. ... ok ---------------------------------------------------------------------- Ran 18 tests in 0.003s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/obitools-1.2.13+dfsg' Traceback (most recent call last): File "/usr/bin/pybuild", line 604, in main(cfg) File "/usr/bin/pybuild", line 375, in main iversions = build_sorted(versions, impl=ipreter.impl) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/share/dh-python/dhpython/version.py", line 449, in build_sorted default_ver = default(impl) ^^^^^^^^^^^^^ File "/usr/share/dh-python/dhpython/version.py", line 380, in default raise ValueError("interpreter implementation not supported: %r" % impl) ValueError: interpreter implementation not supported: '' PYTHONPATH= \ http_proxy='127.0.0.1:9' \ dh_auto_install I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools ['src/obitools/_obitools.pyx'] ['src/obitools/format/_format.pyx'] ['src/obitools/format/genericparser/_genericparser.pyx'] ['src/obitools/utils/_utils.pyx'] ['src/obitools/fastq/_fastq.pyx'] ['src/obitools/word/_binary.pyx'] @@@@> ['src/obitools/word/_readindex.h'] ['src/obitools/word/_readindex.pyx'] ['src/obitools/align/_assemble.pyx'] @@@@> ['src/obitools/align/_lcs.h'] ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.4.c'] ['src/obitools/align/_gprofilenws.pyx'] ['src/obitools/align/_qsassemble.pyx'] ['src/obitools/align/_nws.pyx'] ['src/obitools/align/_dynamic.pyx'] @@@@> ['src/obitools/align/_sse.h'] ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] ['src/obitools/align/_freeendgapfm.pyx'] ['src/obitools/align/_freeendgap.pyx'] ['src/obitools/align/_profilenws.pyx'] ['src/obitools/align/_qsrassemble.pyx'] ['src/obitools/align/_rassemble.pyx'] ['src/obitools/align/_codonnws.pyx'] ['src/obitools/align/_nwsdnabyprot.pyx'] ['src/obitools/tools/_solexapairend.pyx'] ['src/obitools/options/_options.pyx'] ['src/obitools/options/_bioseqfilter.pyx'] ['src/obitools/fasta/_fasta.pyx'] ['src/obitools/profile/_profile.pyx'] running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() Running obidistutils install process running build Running obidistutils build process running littlebigman building 'littlebigman' program x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-1.2.13+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c distutils.ext/src/littlebigman.c -o build/temp.linux-x86_64-cpython-312/distutils.ext/src/littlebigman.o -msse2 distutils.ext/src/littlebigman.c: In function 'main': distutils.ext/src/littlebigman.c:20:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 20 | else | ^~~~ distutils.ext/src/littlebigman.c:23:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 23 | return 0; | ^~~~~~ x86_64-linux-gnu-gcc build/temp.linux-x86_64-cpython-312/distutils.ext/src/littlebigman.o -o build/temp.linux-x86_64-cpython-312/littlebigman Your CPU is in mode : b'-DLITTLE_END' running build_py running build_ext obitools._obitools src/obitools/_obitools.pyx ok obitools.format._format src/obitools/format/_format.pyx ok obitools.format.genericparser._genericparser src/obitools/format/genericparser/_genericparser.pyx ok obitools.utils._utils src/obitools/utils/_utils.pyx ok obitools.fastq._fastq src/obitools/fastq/_fastq.pyx ok obitools.word._binary src/obitools/word/_binary.pyx ok obitools.word._readindex src/obitools/word/_readindex.pyx ok obitools.align._assemble src/obitools/align/_assemble.pyx ok obitools.align._lcs src/obitools/align/_lcs.pyx ok obitools.align._lcs src/obitools/align/_lcs.ext.3.c ok obitools.align._lcs src/obitools/align/_lcs.ext.2.c ok obitools.align._lcs src/obitools/align/_lcs.ext.1.c ok obitools.align._lcs src/obitools/align/_lcs.ext.4.c ok obitools.align._gprofilenws src/obitools/align/_gprofilenws.pyx ok obitools.align._qsassemble src/obitools/align/_qsassemble.pyx ok obitools.align._nws src/obitools/align/_nws.pyx ok obitools.align._dynamic src/obitools/align/_dynamic.pyx ok obitools.align._upperbond src/obitools/align/_upperbond.pyx ok obitools.align._upperbond src/obitools/align/_upperbond.ext.1.c ok obitools.align._freeendgapfm src/obitools/align/_freeendgapfm.pyx ok obitools.align._freeendgap src/obitools/align/_freeendgap.pyx ok obitools.align._profilenws src/obitools/align/_profilenws.pyx ok obitools.align._qsrassemble src/obitools/align/_qsrassemble.pyx ok obitools.align._rassemble src/obitools/align/_rassemble.pyx ok obitools.align._codonnws src/obitools/align/_codonnws.pyx ok obitools.align._nwsdnabyprot src/obitools/align/_nwsdnabyprot.pyx ok obitools.tools._solexapairend src/obitools/tools/_solexapairend.pyx ok obitools.options._options src/obitools/options/_options.pyx ok obitools.options._bioseqfilter src/obitools/options/_bioseqfilter.pyx ok obitools.fasta._fasta src/obitools/fasta/_fasta.pyx ok obitools.profile._profile src/obitools/profile/_profile.pyx ok #####> ['src/obitools/_obitools.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/_obitools.c' Cython extension (up-to-date) #####> ['src/obitools/format/_format.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/_format.c' Cython extension (up-to-date) #####> ['src/obitools/format/genericparser/_genericparser.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/format/genericparser/_genericparser.c' Cython extension (up-to-date) #####> ['src/obitools/utils/_utils.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/utils/_utils.c' Cython extension (up-to-date) #####> ['src/obitools/fastq/_fastq.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/fastq/_fastq.c' Cython extension (up-to-date) #####> ['src/obitools/word/_binary.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_binary.c' Cython extension (up-to-date) #####> ['src/obitools/word/_readindex.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/word/_readindex.c' Cython extension (up-to-date) #####> ['src/obitools/align/_assemble.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_assemble.c' Cython extension (up-to-date) #####> ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.4.c'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_lcs.c' Cython extension (up-to-date) #####> ['src/obitools/align/_gprofilenws.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_gprofilenws.c' Cython extension (up-to-date) #####> ['src/obitools/align/_qsassemble.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsassemble.c' Cython extension (up-to-date) #####> ['src/obitools/align/_nws.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nws.c' Cython extension (up-to-date) #####> ['src/obitools/align/_dynamic.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_dynamic.c' Cython extension (up-to-date) #####> ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_upperbond.c' Cython extension (up-to-date) #####> ['src/obitools/align/_freeendgapfm.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_freeendgapfm.c' Cython extension (up-to-date) #####> ['src/obitools/align/_freeendgap.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_freeendgap.c' Cython extension (up-to-date) #####> ['src/obitools/align/_profilenws.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_profilenws.c' Cython extension (up-to-date) #####> ['src/obitools/align/_qsrassemble.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_qsrassemble.c' Cython extension (up-to-date) #####> ['src/obitools/align/_rassemble.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_rassemble.c' Cython extension (up-to-date) #####> ['src/obitools/align/_codonnws.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_codonnws.c' Cython extension (up-to-date) #####> ['src/obitools/align/_nwsdnabyprot.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/align/_nwsdnabyprot.c' Cython extension (up-to-date) #####> ['src/obitools/tools/_solexapairend.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/tools/_solexapairend.c' Cython extension (up-to-date) #####> ['src/obitools/options/_options.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/options/_options.c' Cython extension (up-to-date) #####> ['src/obitools/options/_bioseqfilter.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/options/_bioseqfilter.c' Cython extension (up-to-date) #####> ['src/obitools/fasta/_fasta.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/fasta/_fasta.c' Cython extension (up-to-date) #####> ['src/obitools/profile/_profile.pyx'] skipping 'build/temp.linux-x86_64-cpython-312/pyrex/obitools/profile/_profile.c' Cython extension (up-to-date) running build_scripts running install_lib creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage/calcBc.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage/drawBcTree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage/findErrors.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage/writeBcTree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/barcodecoverage/readFiles.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/dnahash creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/dnahash/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/dnahash/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/dnahash/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/dnahash/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/dnahash copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/gzip.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/version.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/solexaPairEnd.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree/layout.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree/svg.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree/unrooted.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree/dot.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tree/newick.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/__pycache__/options.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/__pycache__ creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/fastq.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/fnaqual.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/__pycache__/fnaqual.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/__pycache__/embl.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/__pycache__/fasta.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/__pycache__/fastq.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/__pycache__/genbank.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/fasta.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/embl.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/genbank.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/sequence/tagmatcher.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/ontology copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/ontology/go_obo.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/ontology creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/ontology/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/ontology/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/ontology/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/ontology/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/ontology copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/_format.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/genericparser copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/genericparser/_genericparser.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/genericparser creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/genericparser/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/genericparser/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/genericparser/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/genericparser/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/genericparser copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/format/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/__pycache__/bioseq.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/__pycache__/iterator.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/bioseq.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/crc64.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/iterator.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/utils/_utils.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecotag creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecotag/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecotag/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecotag/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecotag/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecotag copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecotag/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecotag creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/__pycache__/gzip.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/__pycache__/zipfile.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/__pycache__/SVGdraw.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/__pycache__ creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/eutils creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/eutils/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/eutils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/eutils/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/eutils/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/eutils creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tagmatcher copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tagmatcher/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tagmatcher creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tagmatcher/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tagmatcher/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tagmatcher/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tagmatcher/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tagmatcher copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tagmatcher/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tagmatcher creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fastq creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fastq/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fastq/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fastq/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fastq/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fastq copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fastq/_fastq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fastq creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/table creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/table/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/table/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/table/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/table/csv.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/table copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/table/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/table copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/decorator.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/unit/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit/__pycache__ creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit/obitools creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit/obitools/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/unit/obitools/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit/obitools/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/unit/obitools/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit/obitools copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/unit/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/SVGdraw.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual/__pycache__/fasta.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual/__pycache__/quality.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual/quality.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual/fasta.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fnaqual/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/zipfile.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/sample.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/__pycache__ creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/go creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/go/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/go/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/go/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/go/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/go copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/go/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/go copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obo/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word/predicate.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word/_binary.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/word/_readindex.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_nwsdnabyprot.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_dynamic.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_rassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_nws.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_lcs.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/homopolymere.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_codonnws.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_gprofilenws.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_qsrassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_freeendgapfm.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/ssearch.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_assemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_qsassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_upperbond.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_freeendgap.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/align/_profilenws.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/svg.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/statistics creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/statistics/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/statistics/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/statistics/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/statistics/hypergeometric.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/statistics copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/statistics/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/statistics copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/statistics/noncentralhypergeo.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/statistics creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/solexa creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/solexa/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/solexa/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/solexa/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/solexa/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/solexa creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/blast creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/blast/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/blast/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/blast/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/blast/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/blast copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fast.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/location copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location/feature.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/location creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/location/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/location/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location/__pycache__/feature.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/location/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/location/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/location creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tools creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tools/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tools/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tools/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tools/_solexapairend.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tools copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tools/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tools copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/tools/solexapairend.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tools creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/sequenceencoder creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/sequenceencoder/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/sequenceencoder/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/sequenceencoder/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/sequenceencoder/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/sequenceencoder creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/thermo creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/thermo/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/thermo/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/thermo/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/thermo/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/thermo creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/kb creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/kb/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/kb/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/kb/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/kb/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/kb copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/kb/extern.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/kb copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/obischemas/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/collections.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/interactive creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/interactive/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/interactive/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/interactive/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/interactive/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/interactive creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/dnaparser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/embl creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/embl/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/embl/__pycache__/parser.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/embl/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/embl/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/embl/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/embl/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/embl copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/embl/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/embl creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/blastdb creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/blastdb/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/blastdb/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/blastdb/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/blastdb/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/blastdb creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank/__pycache__/parser.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank/ncbi.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/seqdb/genbank/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/__pycache__/rootedtree.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/__pycache__/dag.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/__pycache__/tree.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/dag.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/rootedtree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms/clique.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms/__pycache__/component.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms/component.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/algorithms/compact.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/tree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/layout creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/layout/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/layout/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/layout/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/layout/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/layout copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/graph/layout/radialtree.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/layout creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/alignment creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/alignment/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/alignment/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/alignment/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/alignment/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/alignment copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/alignment/ace.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/alignment creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances/phylip.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances/observed.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/distances/r.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/__pycache__/annotation.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/__pycache__/taxonomy.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/__pycache__/sequence.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/__pycache__/options.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/annotation.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/sequence.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecopcr/taxonomy.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/goa creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/goa/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/goa/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/goa/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/goa/parser.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/goa copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/goa/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/goa creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options/bioseqedittag.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options/bioseqcutter.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options/_bioseqfilter.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options/taxonomyfilter.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options/_options.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/options/bioseqfilter.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fasta creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fasta/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fasta/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fasta/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fasta/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fasta copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/fasta/_fasta.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fasta creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/profile creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/profile/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/profile/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/profile/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/profile/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/profile copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/profile/_profile.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/profile creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/carto creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/carto/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/carto/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/carto/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/carto/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/carto copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/_obitools.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode/ecotag.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode/databases.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode/rawdata.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/ecobarcode/taxonomy.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/metabarcoding copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/metabarcoding/options.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/metabarcoding creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/metabarcoding/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/metabarcoding/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/metabarcoding/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/metabarcoding/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/metabarcoding creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/phylogeny creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/phylogeny/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/phylogeny/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/phylogeny/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/phylogeny/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/phylogeny copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/phylogeny/newick.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/phylogeny creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/parallel creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/parallel/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/parallel/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/parallel/__pycache__ copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/parallel/jobqueue.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/parallel copying /build/reproducible-path/obitools-1.2.13+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools/parallel/__init__.py -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/parallel byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage/calcBc.py to calcBc.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage/drawBcTree.py to drawBcTree.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage/findErrors.py to findErrors.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage/writeBcTree.py to writeBcTree.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/barcodecoverage/readFiles.py to readFiles.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/dnahash/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/gzip.py to gzip.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/version.py to version.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/solexaPairEnd.py to solexaPairEnd.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree/layout.py to layout.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree/svg.py to svg.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree/unrooted.py to unrooted.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree/dot.py to dot.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tree/newick.py to newick.cpython-312.pyc /usr/lib/python3.12/dist-packages/obitools/tree/newick.py:25: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/obitools/tree/newick.py:47: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/obitools/tree/newick.py:67: SyntaxWarning: invalid escape sequence '\[' byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/options.py to options.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/fastq.py to fastq.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/fnaqual.py to fnaqual.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/fasta.py to fasta.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/embl.py to embl.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/genbank.py to genbank.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/sequence/tagmatcher.py to tagmatcher.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/ontology/go_obo.py to go_obo.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/ontology/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/genericparser/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/format/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils/bioseq.py to bioseq.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils/crc64.py to crc64.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils/iterator.py to iterator.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/utils/__init__.py to __init__.cpython-312.pyc /usr/lib/python3.12/dist-packages/obitools/utils/__init__.py:192: SyntaxWarning: invalid escape sequence '\w' byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecotag/parser.py to parser.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecotag/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/eutils/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tagmatcher/options.py to options.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tagmatcher/parser.py to parser.cpython-312.pyc /usr/lib/python3.12/dist-packages/obitools/tagmatcher/parser.py:11: SyntaxWarning: invalid escape sequence '\(' byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tagmatcher/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fastq/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/table/csv.py to csv.cpython-312.pyc /usr/lib/python3.12/dist-packages/obitools/table/csv.py:25: SyntaxWarning: invalid escape sequence '\s' byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/table/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/decorator.py to decorator.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit/obitools/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/unit/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/SVGdraw.py to SVGdraw.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual/quality.py to quality.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual/fasta.py to fasta.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fnaqual/__init__.py to __init__.cpython-312.pyc /usr/lib/python3.12/dist-packages/obitools/fnaqual/__init__.py:2: SyntaxWarning: invalid escape sequence '\s' byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/zipfile.py to zipfile.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/sample.py to sample.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/go/parser.py to parser.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/go/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/parser.py to parser.cpython-312.pyc /usr/lib/python3.12/dist-packages/obitools/obo/parser.py:54: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.12/dist-packages/obitools/obo/parser.py:102: SyntaxWarning: invalid escape sequence '\[' /usr/lib/python3.12/dist-packages/obitools/obo/parser.py:230: SyntaxWarning: invalid escape sequence '\[' /usr/lib/python3.12/dist-packages/obitools/obo/parser.py:520: SyntaxWarning: invalid escape sequence '\[' byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obo/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word/options.py to options.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/word/predicate.py to predicate.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align/homopolymere.py to homopolymere.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align/ssearch.py to ssearch.cpython-312.pyc /usr/lib/python3.12/dist-packages/obitools/align/ssearch.py:9: SyntaxWarning: invalid escape sequence '\d' byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/align/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/svg.py to svg.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/statistics/hypergeometric.py to hypergeometric.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/statistics/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/statistics/noncentralhypergeo.py to noncentralhypergeo.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/solexa/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/blast/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fast.py to fast.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/location/feature.py to feature.cpython-312.pyc /usr/lib/python3.12/dist-packages/obitools/location/feature.py:67: SyntaxWarning: invalid escape sequence '\S' /usr/lib/python3.12/dist-packages/obitools/location/feature.py:69: SyntaxWarning: invalid escape sequence '\s' byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/location/__init__.py to __init__.cpython-312.pyc /usr/lib/python3.12/dist-packages/obitools/location/__init__.py:479: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.12/dist-packages/obitools/location/__init__.py:523: SyntaxWarning: invalid escape sequence '\.' byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tools/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/tools/solexapairend.py to solexapairend.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/sequenceencoder/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/thermo/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/kb/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/kb/extern.py to extern.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/options.py to options.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/obischemas/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/collections.py to collections.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/interactive/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/dnaparser.py to dnaparser.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/embl/parser.py to parser.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/embl/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/blastdb/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank/ncbi.py to ncbi.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank/parser.py to parser.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/seqdb/genbank/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/dag.py to dag.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/rootedtree.py to rootedtree.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms/clique.py to clique.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms/component.py to component.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/algorithms/compact.py to compact.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/tree.py to tree.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/layout/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/graph/layout/radialtree.py to radialtree.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/alignment/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/alignment/ace.py to ace.cpython-312.pyc /usr/lib/python3.12/dist-packages/obitools/alignment/ace.py:11: SyntaxWarning: invalid escape sequence '\S' /usr/lib/python3.12/dist-packages/obitools/alignment/ace.py:12: SyntaxWarning: invalid escape sequence '\S' /usr/lib/python3.12/dist-packages/obitools/alignment/ace.py:14: SyntaxWarning: invalid escape sequence '\S' byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances/phylip.py to phylip.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances/observed.py to observed.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/distances/r.py to r.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/options.py to options.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/annotation.py to annotation.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/sequence.py to sequence.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecopcr/taxonomy.py to taxonomy.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/goa/parser.py to parser.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/goa/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options/bioseqedittag.py to bioseqedittag.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options/bioseqcutter.py to bioseqcutter.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options/taxonomyfilter.py to taxonomyfilter.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/options/bioseqfilter.py to bioseqfilter.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/fasta/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/profile/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/carto/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode/options.py to options.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode/ecotag.py to ecotag.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode/databases.py to databases.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode/rawdata.py to rawdata.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/ecobarcode/taxonomy.py to taxonomy.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/metabarcoding/options.py to options.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/metabarcoding/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/phylogeny/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/phylogeny/newick.py to newick.cpython-312.pyc /usr/lib/python3.12/dist-packages/obitools/phylogeny/newick.py:25: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/obitools/phylogeny/newick.py:47: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/obitools/phylogeny/newick.py:73: SyntaxWarning: invalid escape sequence '\[' byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/parallel/jobqueue.py to jobqueue.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools/parallel/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating src/OBITools.egg-info writing src/OBITools.egg-info/PKG-INFO writing dependency_links to src/OBITools.egg-info/dependency_links.txt writing requirements to src/OBITools.egg-info/requires.txt writing top-level names to src/OBITools.egg-info/top_level.txt writing manifest file 'src/OBITools.egg-info/SOURCES.txt' reading manifest file 'src/OBITools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.pem' under directory 'distutils.ext' writing manifest file 'src/OBITools.egg-info/SOURCES.txt' Copying src/OBITools.egg-info to /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/OBITools-1.2.13.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obicount -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obitaxonomy -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/ecotag -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obisubset -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/ecotaxstat -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obitab -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/illuminapairedend -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obiannotate -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/extractreads -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obiaddtaxids -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obisort -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obisilva -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/ali2consensus -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obicut -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/oligotag -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obijoinpairedend -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/ngsfilter -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obiclean -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obidistribute -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obicomplement -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obiextract -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obiuniq -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/extractreads2 -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obisample -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/ecodbtaxstat -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obiselect -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obihead -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obipr2 -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/ecotaxspecificity -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obistat -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obisplit -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obigrep -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obiconvert -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obitail -> /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obicount to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obitaxonomy to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ecotag to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obisubset to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ecotaxstat to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obitab to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/illuminapairedend to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiannotate to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/extractreads to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiaddtaxids to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obisort to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obisilva to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ali2consensus to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obicut to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/oligotag to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obijoinpairedend to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ngsfilter to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiclean to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obidistribute to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obicomplement to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiextract to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiuniq to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/extractreads2 to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obisample to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ecodbtaxstat to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiselect to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obihead to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obipr2 to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ecotaxspecificity to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obistat to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obisplit to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obigrep to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiconvert to 755 changing mode of /build/reproducible-path/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obitail to 755 make[1]: Leaving directory '/build/reproducible-path/obitools-1.2.13+dfsg' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/obitools-1.2.13+dfsg' dh_installman find debian -name "ecoPCR.1*" -delete find debian -name "ecofind.1*" -delete make[1]: Leaving directory '/build/reproducible-path/obitools-1.2.13+dfsg' dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz: debian/obitools/usr/lib/python3/dist-packages/obitools/_obitools.cpython-312-x86_64-linux-gnu.so: DWARF compression not beneficial - old size 843324 new size 845817 dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package obitools: substitution variable ${sphinxdoc:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package obitools: substitution variable ${sphinxdoc:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'obitools' in '../obitools_1.2.13+dfsg-9_amd64.deb'. dpkg-deb: building package 'obitools-dbgsym' in '../obitools-dbgsym_1.2.13+dfsg-9_amd64.deb'. dpkg-genbuildinfo --build=binary -O../obitools_1.2.13+dfsg-9_amd64.buildinfo dpkg-genchanges --build=binary -O../obitools_1.2.13+dfsg-9_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2858336 and its subdirectories I: Current time: Thu Nov 27 04:44:29 -12 2025 I: pbuilder-time-stamp: 1764261869 Fri Oct 25 10:21:30 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Fri Oct 25 10:21:30 UTC 2024 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Fri Oct 25 10:31:22 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Fri Oct 25 10:31:23 UTC 2024 I: obitools_1.2.13+dfsg-9_amd64.changes: Format: 1.8 Date: Thu, 20 Jun 2024 09:39:45 +0200 Source: obitools Binary: obitools obitools-dbgsym Architecture: amd64 Version: 1.2.13+dfsg-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: obitools - programs to analyze NGS data in a DNA metabarcoding context Closes: 1073586 Changes: obitools (1.2.13+dfsg-9) unstable; urgency=medium . [ Sudip Mukherjee ] * Use pickle to fix error with extractreads. (Closes: #1073586) Checksums-Sha1: e162fab075f42e3a821a817823b73e6148fc3524 3861424 obitools-dbgsym_1.2.13+dfsg-9_amd64.deb 100d4bf45dc2da6a693b850c313424d4602838d6 8105 obitools_1.2.13+dfsg-9_amd64.buildinfo 49c7e027750595887a42a1e1e02ff54699326bcd 700104 obitools_1.2.13+dfsg-9_amd64.deb Checksums-Sha256: 23691af1522be7353d7cd8bdae318d8bfe3fb6d13d12fcab51eb0905842ba342 3861424 obitools-dbgsym_1.2.13+dfsg-9_amd64.deb e57d3218aa01962370bb099f17a1c00cd38031cb7a1c5da89b2f1a929c29f55b 8105 obitools_1.2.13+dfsg-9_amd64.buildinfo 80dad25677cf9816be69955a98b547c11032e94fe233072267535e3b789d9786 700104 obitools_1.2.13+dfsg-9_amd64.deb Files: c68a9c156ff8002ee647e27f12188275 3861424 debug optional obitools-dbgsym_1.2.13+dfsg-9_amd64.deb 4909dfe4d48e12ec9a60f4e673094993 8105 science optional obitools_1.2.13+dfsg-9_amd64.buildinfo 0e7aecd65d3851079b722495d51283b3 700104 science optional obitools_1.2.13+dfsg-9_amd64.deb Fri Oct 25 10:31:24 UTC 2024 I: diffoscope 281 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_16-36943.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.vUQv4JyY/obitools_1.2.13+dfsg-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.vUQv4JyY/obitools_1.2.13+dfsg-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.vUQv4JyY/obitools_1.2.13+dfsg-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.vUQv4JyY/b1/obitools_1.2.13+dfsg-9_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.vUQv4JyY/b2/obitools_1.2.13+dfsg-9_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.455s) 0.455s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.066s) 0.066s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 805ms CPU time consumed: 803ms Fri Oct 25 10:31:25 UTC 2024 I: diffoscope 281 found no differences in the changes files, and a .buildinfo file also exists. Fri Oct 25 10:31:25 UTC 2024 I: obitools from unstable built successfully and reproducibly on amd64. Fri Oct 25 10:31:26 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Oct 25 10:31:26 UTC 2024 I: Submitting 12K b1/obitools_1.2.13+dfsg-9_amd64.buildinfo.asc Fri Oct 25 10:31:27 UTC 2024 I: Submitting 12K b2/obitools_1.2.13+dfsg-9_amd64.buildinfo.asc Fri Oct 25 10:31:29 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Oct 25 10:31:29 UTC 2024 I: Done submitting .buildinfo files. Fri Oct 25 10:31:29 UTC 2024 I: Removing signed obitools_1.2.13+dfsg-9_amd64.buildinfo.asc files: removed './b1/obitools_1.2.13+dfsg-9_amd64.buildinfo.asc' removed './b2/obitools_1.2.13+dfsg-9_amd64.buildinfo.asc'