Wed Dec 4 21:17:29 UTC 2024 I: starting to build nim-hts/unstable/amd64 on jenkins on '2024-12-04 21:17' Wed Dec 4 21:17:29 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_10/24169/console.log Wed Dec 4 21:17:29 UTC 2024 I: Downloading source for unstable/nim-hts=0.3.25+ds-2 --2024-12-04 21:17:29-- http://deb.debian.org/debian/pool/main/n/nim-hts/nim-hts_0.3.25%2bds-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2226 (2.2K) [text/prs.lines.tag] Saving to: ‘nim-hts_0.3.25+ds-2.dsc’ 0K .. 100% 285M=0s 2024-12-04 21:17:29 (285 MB/s) - ‘nim-hts_0.3.25+ds-2.dsc’ saved [2226/2226] Wed Dec 4 21:17:29 UTC 2024 I: nim-hts_0.3.25+ds-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: nim-hts Binary: nim-hts-dev, nim-hts-examples Architecture: all Version: 0.3.25+ds-2 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Nilesh Patra , Debian Nim Team Homepage: https://github.com/brentp/hts-nim Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/nim-hts Vcs-Git: https://salsa.debian.org/med-team/nim-hts.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, libhts-dev Build-Depends: debhelper-compat (= 13), nim, libhts-dev, samtools, tabix, bcftools Package-List: nim-hts-dev deb libs optional arch=all nim-hts-examples deb libs optional arch=all Checksums-Sha1: d9eaec99c030759b9cbe77c14520a880a2d1ae93 527888 nim-hts_0.3.25+ds.orig.tar.xz ae54a52ac9817794accffab12ca1756ea85223d5 341344 nim-hts_0.3.25+ds-2.debian.tar.xz Checksums-Sha256: b588277375a83d45fc96a3c08be69da0783a805ecaf0945083e8390936ee0f63 527888 nim-hts_0.3.25+ds.orig.tar.xz 91ef6f42d48f8cc84596081eb641dd815349d26aab575f731be8a80b0fc83b52 341344 nim-hts_0.3.25+ds-2.debian.tar.xz Files: 5a5ff42d622f2c3e997812fce01d6030 527888 nim-hts_0.3.25+ds.orig.tar.xz eb1ead192ef4d6a25162dbbc3db7b591 341344 nim-hts_0.3.25+ds-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmdO5UkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGCmBAAmwHKO+w4jCnMG8Yj2M2Xd8BPJ+XrRadv ZKeXYiYDzybnvad7f+11/t+HZ9/Qqdt5xTzsHiropgNxLl70bFgymX14Q5TsEtCY wD2nx7xwRa0kzLbEiWZY9hO/MPeMagAnnJKfmNlD94IBGuPVHeiEo3elVA35Xsbu SuyGQnFz7BNCR3MMvLpEOSPHbKlcRXYPAmxnVuPCLnfr4f+MhYd9jhTmhO7If4bJ 2weaBFB5AmcRKbdlS23Ca2T7Q4lnVzD7tTfzWTvpfVFg97lo0lL1DRzsFQPKHjxp CYI/QQ2JSHyPY2JTjndpPbTXKTXCIPrVhFyCNtcU0Nc+Wb0r/lfSZA2+0byY5JVj VfCzCpz/4Kg5214/a/tMLBmFaQe0ItuC9uhl1PsAdHjwl5H+dgOjyqZ1ajl1rCp8 5z9x7hPqTa1juNg5d1pP1PpWR1B8allvURtjrx2iQvpIvLTy0i/JnvjFSNgzPYn1 IamGiljN1LLWe9ekfh3E7uANI8A+SV3E/C7T7mlHR102QKdzkaRD2PDsl6ujlKT9 fAiEln1P0wwqc7xZBEXz71lE2EdRCEWlsee+K3yN3+b2cUVq1JeKacEPh00zjvtU /aZvv5z1log31NCVj8KgLniahJSQIS430lCZxuv7edtPkflyjzoQ1GPyvdiOxxR8 0MUmkEyCPvQ= =F6D+ -----END PGP SIGNATURE----- Wed Dec 4 21:17:29 UTC 2024 I: Checking whether the package is not for us Wed Dec 4 21:17:29 UTC 2024 I: Starting 1st build on remote node ionos5-amd64.debian.net. Wed Dec 4 21:17:29 UTC 2024 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Wed Dec 4 21:19:27 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jan 6 15:40:31 -12 2026 I: pbuilder-time-stamp: 1767757231 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [nim-hts_0.3.25+ds-2.dsc] I: copying [./nim-hts_0.3.25+ds.orig.tar.xz] I: copying [./nim-hts_0.3.25+ds-2.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Dec 3 11:02:33 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./nim-hts_0.3.25+ds-2.dsc: no acceptable signature found dpkg-source: info: extracting nim-hts in nim-hts-0.3.25+ds dpkg-source: info: unpacking nim-hts_0.3.25+ds.orig.tar.xz dpkg-source: info: unpacking nim-hts_0.3.25+ds-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying dontDoNestedTests.patch dpkg-source: info: applying disable-test-with-sourceless-file.patch dpkg-source: info: applying fix-version-comparision.patch dpkg-source: info: applying no-incompatible-pointer-types.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2413180/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='e3d3a7e51e8e4c57b8f665e72954d3b0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2413180' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.AIcfSYnF/pbuilderrc_kRLt --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.AIcfSYnF/b1 --logfile b1/build.log nim-hts_0.3.25+ds-2.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2413180/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), nim, libhts-dev, samtools, tabix, bcftools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19968 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on nim; however: Package nim is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on tabix; however: Package tabix is not installed. pbuilder-satisfydepends-dummy depends on bcftools; however: Package bcftools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bcftools{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libpcre3{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} nim{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} samtools{a} sensible-utils{a} tabix{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl git krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix python3-gffutils python3-matplotlib wget 0 packages upgraded, 94 newly installed, 0 to remove and 0 not upgraded. Need to get 43.5 MB of archives. After unpacking 158 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2~rc1-2 [23.8 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 21 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.11.0-1 [359 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libhtscodecs2 amd64 1.6.1-1 [95.6 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libhts3t64 amd64 1.20+ds-2 [455 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 bcftools amd64 1.20-2 [760 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.2~rc1-2 [55.4 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 45 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.21.3-3 [59.5 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.21.3-3 [41.7 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.21.3-3 [42.0 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.21.3-3 [53.5 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.21.3-3 [126 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b6 [316 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.22.0-1 [598 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.8-2 [449 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.8-2 [449 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.7-2+b1 [123 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-2+b1 [208 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.19.0-3+b3 [98.9 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10-1+b1 [1317 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.8-2 [1391 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.21.3-3 [15.7 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.5.18+dfsg-3+b1 [303 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libnghttp3-dev amd64 1.6.0-2 [88.5 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.9.1-1 [23.1 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libngtcp2-dev amd64 1.9.1-1 [167 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.3.2-2 [2742 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.6+dfsg-1+b1 [365 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libcurl4-gnutls-dev amd64 8.11.0-1 [472 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.22-1 [55.8 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.6.3-1+b1 [316 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libhts-dev amd64 1.20+ds-2 [1701 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.5-2+b1 [105 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libpcre3 amd64 2:8.39-15.1 [346 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 nim amd64 1.6.14-3 [4164 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 samtools amd64 1.20-3 [653 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 tabix amd64 1.20+ds-2 [486 kB] Fetched 43.5 MB in 1s (53.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19968 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. 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Unpacking liblzma-dev:amd64 (5.6.3-1+b1) ... Selecting previously unselected package libhts-dev:amd64. Preparing to unpack .../88-libhts-dev_1.20+ds-2_amd64.deb ... Unpacking libhts-dev:amd64 (1.20+ds-2) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../89-libncurses6_6.5-2+b1_amd64.deb ... Unpacking libncurses6:amd64 (6.5-2+b1) ... Selecting previously unselected package libpcre3:amd64. Preparing to unpack .../90-libpcre3_2%3a8.39-15.1_amd64.deb ... Unpacking libpcre3:amd64 (2:8.39-15.1) ... Selecting previously unselected package nim. Preparing to unpack .../91-nim_1.6.14-3_amd64.deb ... Unpacking nim (1.6.14-3) ... Selecting previously unselected package samtools. Preparing to unpack .../92-samtools_1.20-3_amd64.deb ... Unpacking samtools (1.20-3) ... Selecting previously unselected package tabix. Preparing to unpack .../93-tabix_1.20+ds-2_amd64.deb ... Unpacking tabix (1.20+ds-2) ... Setting up libhtscodecs2:amd64 (1.6.1-1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/nim-hts-0.3.25+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../nim-hts_0.3.25+ds-2_source.changes dpkg-buildpackage: info: source package nim-hts dpkg-buildpackage: info: source version 0.3.25+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/nim-hts-0.3.25+ds' dh_auto_clean # remnants from testing rm -f ____t.vcf t.gz ti.txt.gz ti.txt.gz.csi rm -f tests/run tests/HG02002.bam.csi tests/auxtest tests/newsample.vcf tests/outmissing.vcf tests/outv.vcf tests/outz.vcf tests/sample.fa.fai tests/all tests/htstest tests/bgzftest tests/bamtest rm -rf tests/nimcache make[1]: Leaving directory '/build/reproducible-path/nim-hts-0.3.25+ds' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/nim-hts-dev.substvars debian/nim-hts-examples.substvars debian/files rm -fr -- debian/nim-hts-dev/ debian/tmp/ debian/nim-hts-examples/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/nim-hts-0.3.25+ds' dh_auto_build # Regenerate repacked files cat tests/sa.sam | samtools view -Sb - > tests/sa.bam samtools index tests/sa.bam tests/sa.bam.bai cat debian/missing-sources/HG02002.sam | samtools view -Sb - > tests/HG02002.bam samtools index tests/HG02002.bam tests/HG02002.bam.bai tabix tests/test.vcf.gz bcftools index tests/test.bcf make[1]: Leaving directory '/build/reproducible-path/nim-hts-0.3.25+ds' rm -f debian/nim-hts-dev.debhelper.log debian/nim-hts-examples.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/nim-hts-0.3.25+ds' nim c --nimcache:/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache tests/all.nim Hint: used config file '/etc/nim/nim.cfg' [Conf] Hint: used config file '/etc/nim/config.nims' [Conf] Hint: used config file '/build/reproducible-path/nim-hts-0.3.25+ds/tests/nim.cfg' [Conf] ............................................................................................................. /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/flag.nim(1, 18) Hint: duplicate import of 'hts_concat'; previous import here: /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam.nim(1, 17) [DuplicateModuleImport] . /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/cigar.nim(1, 18) Hint: duplicate import of 'hts_concat'; previous import here: /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/flag.nim(1, 18) [DuplicateModuleImport] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/cigar.nim(2, 8) Hint: duplicate import of 'strutils'; previous import here: /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam.nim(4, 8) [DuplicateModuleImport] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/cigar.nim(57, 34) Warning: target type is larger than source type [CastSizes] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam.nim(248, 34) template/generic instantiation of `bam_get_cigar` from here /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/cigar.nim(52, 46) Warning: target type is larger than source type [CastSizes] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam.nim(262, 52) Warning: implicit conversion to 'cstring' from a non-const location: region; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam.nim(373, 28) Warning: implicit conversion to 'cstring' from a non-const location: mode; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam.nim(409, 35) Warning: implicit conversion to 'cstring' from a non-const location: spl[0]; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam.nim(409, 43) Warning: implicit conversion to 'cstring' from a non-const location: spl[1]; this will become a compile time error in the future [CStringConv] .. /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/auxtags.nim(3, 1) Hint: duplicate import of 'strformat'; previous import here: /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam.nim(3, 8) [DuplicateModuleImport] .... /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(118, 18) Warning: conversion to enum with holes is unsafe: Status(ret) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(119, 16) Warning: conversion to enum with holes is unsafe: Status(bcf_hdr_sync(h.hdr)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(181, 16) Warning: conversion to enum with holes is unsafe: Status(bcf_hdr_sync(h.hdr)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(190, 16) Warning: conversion to enum with holes is unsafe: Status(bcf_hdr_sync(h.hdr)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(288, 18) Warning: conversion to enum with holes is unsafe: Status(int(bcf_update_format(f.v.vcf.header.hdr, f.v.c, cstring(key), nil, 0, cint(htype)))) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(297, 20) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(309, 22) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(320, 22) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(352, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(359, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(366, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(376, 20) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(391, 20) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(405, 20) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(432, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(436, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(441, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(461, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(467, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(527, 23) Warning: conversion to enum with holes is unsafe: BCF_TYPE(fmt.type) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(542, 23) Warning: conversion to enum with holes is unsafe: BCF_TYPE(fld.type) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(601, 27) Warning: implicit conversion to 'cstring' from a non-const location: v.fname; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(603, 31) Warning: implicit conversion to 'cstring' from a non-const location: v.fname; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(645, 30) Warning: implicit conversion to 'cstring' from a non-const location: v.fname; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(664, 36) Warning: implicit conversion to 'cstring' from a non-const location: `[]`(region) do: 0 .. pred(cidx, 1); this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(700, 32) Warning: implicit conversion to 'cstring' from a non-const location: v.fname; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(947, 71) Warning: target type is larger than source type [CastSizes] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(947, 71) Warning: target type is larger than source type [CastSizes] . /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/fai.nim(38, 24) Warning: See corresponding Defect; IndexError is deprecated [Deprecated] ... /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/csi.nim(17, 51) Warning: implicit conversion to 'cstring' from a non-const location: base_path & ".csi"; this will become a compile time error in the future [CStringConv] ... /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(4, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(10, 18) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/auxtags.nim(53, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(4, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(13, 19) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/auxtags.nim(71, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(4, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(13, 19) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/auxtags.nim(74, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(4, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(17, 19) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/auxtags.nim(63, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(4, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(17, 19) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/auxtags.nim(66, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(4, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(17, 19) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/auxtags.nim(74, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(25, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(40, 18) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/auxtags.nim(58, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] . /build/reproducible-path/nim-hts-0.3.25+ds/tests/vcftest.nim(23, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/vcftest.nim(46, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/vcftest.nim(63, 13) template/generic instantiation of `check` from here /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(448, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/tests/vcftest.nim(404, 7) Hint: 'current_line' is declared but not used [XDeclaredButNotUsed] /build/reproducible-path/nim-hts-0.3.25+ds/tests/vcftest.nim(406, 7) Hint: 'currentBlock' is declared but not used [XDeclaredButNotUsed] /build/reproducible-path/nim-hts-0.3.25+ds/tests/vcftest.nim(411, 7) Hint: 'block_pos_i' is declared but not used [XDeclaredButNotUsed] ..... CC: ../../../../usr/lib/nim/lib/std/private/digitsutils.nim CC: ../../../../usr/lib/nim/lib/system/assertions.nim CC: ../../../../usr/lib/nim/lib/system/formatfloat.nim CC: ../../../../usr/lib/nim/lib/system/dollars.nim CC: ../../../../usr/lib/nim/lib/system/io.nim CC: ../../../../usr/lib/nim/lib/system.nim CC: ../../../../usr/lib/nim/lib/std/exitprocs.nim CC: ../../../../usr/lib/nim/lib/pure/parseutils.nim CC: ../../../../usr/lib/nim/lib/pure/math.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem@sassertions.nim.c: In function 'sysFatal__systemZassertions_34': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem@sassertions.nim.c:330:1: warning: 'noreturn' function does return 330 | } | ^ CC: ../../../../usr/lib/nim/lib/pure/algorithm.nim CC: ../../../../usr/lib/nim/lib/pure/unicode.nim CC: ../../../../usr/lib/nim/lib/pure/strutils.nim CC: ../../../../usr/lib/nim/lib/pure/streams.nim CC: ../../../../usr/lib/nim/lib/pure/times.nim CC: ../../../../usr/lib/nim/lib/pure/hashes.nim CC: ../../../../usr/lib/nim/lib/pure/collections/sets.nim CC: ../../../../usr/lib/nim/lib/pure/os.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem@sio.nim.c: In function 'raiseEIO__systemZio_96': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem@sio.nim.c:426:1: warning: 'noreturn' function does return 426 | } | ^ CC: ../../../../usr/lib/nim/lib/pure/strformat.nim CC: ../../../../usr/lib/nim/lib/pure/terminal.nim CC: ../../../../usr/lib/nim/lib/pure/unittest.nim CC: ../src/hts/private/hts_concat.nim CC: ../src/hts/bam/flag.nim CC: flagtest.nim CC: ../src/hts/bam.nim CC: cigartest.nim CC: htstest.nim CC: ../src/hts/vcf.nim CC: ../src/hts/fai.nim CC: ../src/hts/bgzf.nim CC: ../src/hts/csi.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@spure@sunittest.nim.c: In function 'testEnded__pureZunittest_469': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@spure@sunittest.nim.c:1016:66: warning: passing argument 2 of 'writeLine__pureZstreams_205' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1016 | writeLine__pureZstreams_205((*formatter).stream, TM__Um3CQPZ9bILAIolZOsxNIaw_29, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@spure@sunittest.nim.c:276:123: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 276 | N_LIB_PRIVATE N_NIMCALL(void, writeLine__pureZstreams_205)(tyObject_StreamObj__GEE8eLXRbeO6QCtMQowoMg* s, NimStringDesc** args, NI argsLen_0); | ~~~~~~~~~~~~~~~~^~~~ CC: ../src/hts/bgzf/bgzi.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@spure@sunittest.nim.c:1179:58: warning: passing argument 2 of 'writeLine__pureZstreams_205' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1179 | writeLine__pureZstreams_205((*formatter).stream, TM__Um3CQPZ9bILAIolZOsxNIaw_39, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@spure@sunittest.nim.c:276:123: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 276 | N_LIB_PRIVATE N_NIMCALL(void, writeLine__pureZstreams_205)(tyObject_StreamObj__GEE8eLXRbeO6QCtMQowoMg* s, NimStringDesc** args, NI argsLen_0); | ~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@spure@sunittest.nim.c: In function 'suiteEnded__pureZunittest_518': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@spure@sunittest.nim.c:1185:58: warning: passing argument 2 of 'writeLine__pureZstreams_205' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1185 | writeLine__pureZstreams_205((*formatter).stream, TM__Um3CQPZ9bILAIolZOsxNIaw_41, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@spure@sunittest.nim.c:276:123: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 276 | N_LIB_PRIVATE N_NIMCALL(void, writeLine__pureZstreams_205)(tyObject_StreamObj__GEE8eLXRbeO6QCtMQowoMg* s, NimStringDesc** args, NI argsLen_0); | ~~~~~~~~~~~~~~~~^~~~ CC: ../src/hts/stats.nim CC: ../src/hts.nim CC: bgzftest.nim CC: faitest.nim CC: auxtest.nim CC: vcftest.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@sbam.nim.c: In function 'set_fields__OOZsrcZhtsZbam_1045': CC: bamtest.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mhtstest.nim.c: In function 'atmhtstestdotnim_Init000': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@sbam.nim.c:1587:55: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1587 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__fmsjfOMDZ7knDvhlaoEJsw_34, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@sbam.nim.c:789:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 789 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { | ~~~~~~~~~~~~~~~~^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@sbam.nim.c: In function 'set_option__OOZsrcZhtsZbam_1086': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@sbam.nim.c:1614:55: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1614 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__fmsjfOMDZ7knDvhlaoEJsw_34, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@sbam.nim.c:789:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 789 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { | ~~~~~~~~~~~~~~~~^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mhtstest.nim.c:2270:104: warning: passing argument 2 of 'set_fields__OOZsrcZhtsZbam_1045' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 2270 | colonc1___htstest_215 = set_fields__OOZsrcZhtsZbam_1045(b__htstest_21, TM__jvcRnrtV7JVGTy2WY4Ac9bQ_61, 2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mhtstest.nim.c:395:161: note: expected 'tyEnum_SamField__1wcmbbtoXMGE4gx7JxtKjw *' {aka 'int *'} but argument is of type 'const tyEnum_SamField__1wcmbbtoXMGE4gx7JxtKjw *' {aka 'const int *'} 395 | N_LIB_PRIVATE N_NIMCALL(NI, set_fields__OOZsrcZhtsZbam_1045)(tyObject_BamcolonObjectType___10nvBEE8jyF9b8WnXewcLvg* b, tyEnum_SamField__1wcmbbtoXMGE4gx7JxtKjw* fields, NI fieldsLen_0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c: In function 'destroy_vcf__OOZsrcZhtsZvcf_312': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c:901:71: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 901 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__YpitUkA2u56canbHw5ilBQ_8, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c:817:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 817 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { | ~~~~~~~~~~~~~~~~^ CC: statstests.nim CC: vcfiso.nim CC: ../src/hts/files.nim CC: test_files.nim CC: all.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@scsi.nim.c: In function 'new_csi__OOZsrcZhtsZcsi_87': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@scsi.nim.c:608:55: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 608 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__tWGoZmdVu2LPIrNJYnsx1g_7, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@scsi.nim.c:562:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 562 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { | ~~~~~~~~~~~~~~~~^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@sbgzf@sbgzi.nim.c: In function 'close__OOZsrcZhtsZbgzfZbgzi_160': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@sbgzf@sbgzi.nim.c:634:55: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 634 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__qoWmRqjZwkhRpTDfcqFa9bQ_10, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@sbgzf@sbgzi.nim.c:586:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 586 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { | ~~~~~~~~~~~~~~~~^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@sbgzf@sbgzi.nim.c:646:55: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 646 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__qoWmRqjZwkhRpTDfcqFa9bQ_12, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@sbgzf@sbgzi.nim.c:586:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 586 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { | ~~~~~~~~~~~~~~~~^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c: In function 'close__OOZsrcZhtsZvcf_786': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c:1663:51: warning: passing argument 1 of 'contains__stdZenumutils_44' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1663 | T16_ = contains__stdZenumutils_44(TM__YpitUkA2u56canbHw5ilBQ_39, 2, (*v).fname); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@ssrc@shts@svcf.nim.c:1614:71: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 1614 | static N_INLINE(NIM_BOOL, contains__stdZenumutils_44)(NimStringDesc** a, NI aLen_0, NimStringDesc* item) { | ~~~~~~~~~~~~~~~~^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mbgzftest.nim.c: In function 'write_interval__OOZsrcZhtsZbgzfZbgzi_131': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mbgzftest.nim.c:1645:55: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1645 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__9aWI9cEsc4bKIGHzHjCQ7r4w_127, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mbgzftest.nim.c:1533:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 1533 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { | ~~~~~~~~~~~~~~~~^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3152': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:4305:1: warning: 'noreturn' function does return 4305 | } | ^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3072': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:4390:1: warning: 'noreturn' function does return 4390 | } | ^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_2934': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:4597:1: warning: 'noreturn' function does return 4597 | } | ^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3403': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:4818:1: warning: 'noreturn' function does return 4818 | } | ^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3426': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:6274:1: warning: 'noreturn' function does return 6274 | } | ^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcfiso.nim.c: In function 'atmvcfisodotnim_Init000': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcfiso.nim.c:1836:99: warning: passing argument 1 of 'contains__stdZenumutils_44' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1836 | T57_ = contains__stdZenumutils_44(TM__sA80JslFRt9aI2gci0rbANg_22, 2, ((NimStringDesc*) &TM__sA80JslFRt9aI2gci0rbANg_25)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcfiso.nim.c:909:71: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 909 | static N_INLINE(NIM_BOOL, contains__stdZenumutils_44)(NimStringDesc** a, NI aLen_0, NimStringDesc* item) { | ~~~~~~~~~~~~~~~~^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3318': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:6724:1: warning: 'noreturn' function does return 6724 | } | ^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcfiso.nim.c:2351:149: warning: passing argument 2 of 'nsuSplitCharSet' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 2351 | T210_ = nsuSplitCharSet(((NimStringDesc*) &TM__sA80JslFRt9aI2gci0rbANg_25), TM__sA80JslFRt9aI2gci0rbANg_59, ((NI) 1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcfiso.nim.c:499:135: note: expected 'NU8 *' {aka 'unsigned char *'} but argument is of type 'const NU8 *' {aka 'const unsigned char *'} 499 | N_LIB_PRIVATE N_NIMCALL(tySequence__sM4lkSb7zS6F7OVMvW9cffQ*, nsuSplitCharSet)(NimStringDesc* s, tySet_tyChar__nmiMWKVIe46vacnhAFrQvw seps, NI maxsplit); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcfiso.nim.c:2387:135: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 2387 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__sA80JslFRt9aI2gci0rbANg_60, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcfiso.nim.c:1443:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 1443 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { | ~~~~~~~~~~~~~~~~^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcfiso.nim.c:2524:119: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 2524 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__sA80JslFRt9aI2gci0rbANg_63, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcfiso.nim.c:1443:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 1443 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { | ~~~~~~~~~~~~~~~~^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3254': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:7759:1: warning: 'noreturn' function does return 7759 | } | ^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c: In function 'sysFatal__system_3193': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c:7789:1: warning: 'noreturn' function does return 7789 | } | ^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c: In function 'write_linked_blocks__vcftest_4811': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c:6155:59: warning: passing argument 1 of 'contains__stdZenumutils_44' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 6155 | T14_ = contains__stdZenumutils_44(TM__9b1mIhyjPa0b9anS9ar5V6sPA_848, 2, ((NimStringDesc*) &TM__9b1mIhyjPa0b9anS9ar5V6sPA_850)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c:6051:71: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 6051 | static N_INLINE(NIM_BOOL, contains__stdZenumutils_44)(NimStringDesc** a, NI aLen_0, NimStringDesc* item) { | ~~~~~~~~~~~~~~~~^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c:6514:112: warning: passing argument 2 of 'nsuSplitCharSet' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 6514 | T115_ = nsuSplitCharSet(((NimStringDesc*) &TM__9b1mIhyjPa0b9anS9ar5V6sPA_850), TM__9b1mIhyjPa0b9anS9ar5V6sPA_860, ((NI) 1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c:941:135: note: expected 'NU8 *' {aka 'unsigned char *'} but argument is of type 'const NU8 *' {aka 'const unsigned char *'} 941 | N_LIB_PRIVATE N_NIMCALL(tySequence__sM4lkSb7zS6F7OVMvW9cffQ*, nsuSplitCharSet)(NimStringDesc* s, tySet_tyChar__nmiMWKVIe46vacnhAFrQvw seps, NI maxsplit); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c:6550:95: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 6550 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__9b1mIhyjPa0b9anS9ar5V6sPA_861, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c:3487:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 3487 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { | ~~~~~~~~~~~~~~~~^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c:6608:79: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 6608 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__9b1mIhyjPa0b9anS9ar5V6sPA_863, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c:3487:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 3487 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { | ~~~~~~~~~~~~~~~~^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c: In function 'checkIndexWorks__vcftest_5211': /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c:6737:58: warning: passing argument 1 of 'contains__stdZenumutils_44' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 6737 | T9_ = contains__stdZenumutils_44(TM__9b1mIhyjPa0b9anS9ar5V6sPA_848, 2, ((NimStringDesc*) &TM__9b1mIhyjPa0b9anS9ar5V6sPA_919)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c:6051:71: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 6051 | static N_INLINE(NIM_BOOL, contains__stdZenumutils_44)(NimStringDesc** a, NI aLen_0, NimStringDesc* item) { | ~~~~~~~~~~~~~~~~^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c:7034:111: warning: passing argument 2 of 'nsuSplitCharSet' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 7034 | T86_ = nsuSplitCharSet(((NimStringDesc*) &TM__9b1mIhyjPa0b9anS9ar5V6sPA_919), TM__9b1mIhyjPa0b9anS9ar5V6sPA_860, ((NI) 1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c:941:135: note: expected 'NU8 *' {aka 'unsigned char *'} but argument is of type 'const NU8 *' {aka 'const unsigned char *'} 941 | N_LIB_PRIVATE N_NIMCALL(tySequence__sM4lkSb7zS6F7OVMvW9cffQ*, nsuSplitCharSet)(NimStringDesc* s, tySet_tyChar__nmiMWKVIe46vacnhAFrQvw seps, NI maxsplit); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c:7071:95: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 7071 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__9b1mIhyjPa0b9anS9ar5V6sPA_861, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c:3487:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 3487 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { | ~~~~~~~~~~~~~~~~^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c:7098:79: warning: passing argument 2 of 'writeLine__OOZsrcZhtsZbam_782' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 7098 | writeLine__OOZsrcZhtsZbam_782(stderr, TM__9b1mIhyjPa0b9anS9ar5V6sPA_863, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcftest.nim.c:3487:79: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 3487 | static N_INLINE(void, writeLine__OOZsrcZhtsZbam_782)(FILE* f, NimStringDesc** x, NI xLen_0) { | ~~~~~~~~~~~~~~~~^ Hint: [Link] Hint: gc: refc; opt: none (DEBUG BUILD, `-d:release` generates faster code) 84531 lines; 11.016s; 145.695MiB peakmem; proj: /build/reproducible-path/nim-hts-0.3.25+ds/tests/all.nim; out: /build/reproducible-path/nim-hts-0.3.25+ds/tests/all [SuccessX] tests/all [Suite] flag test-suite [OK] test flags [Suite] flag cigar-suite [OK] test op [OK] new cigar [Suite] flag hts-suite [OK] test hts [Suite] bgzf-suite [OK] test-write [OK] test-read [OK] bgzf-iterator [E::bgzf_read_block] Failed to read BGZF block data at offset 0 expected 24944 bytes; hread returned 982 [OK] bgzf-iterator-err [OK] write-with-index [OK] read-new-index [OK] csi-iterator [Suite] fai-suite [OK] fai-read [OK] fai chrom_len [OK] fai indexing [OK] issue26 [OK] close [Suite] aux-test [OK] test aux [OK] tag [OK] drop tag [Suite] vcf suite [E::bcf_hdr_read] Input is not detected as bcf or vcf format [OK] empty file rasies [OK] filter [OK] test writer [OK] vcf write missing format values [OK] iterating over info fields [OK] that adding a new sample and setting values works. [OK] format fields [OK] test empty format [OK] test format setting [OK] add string to header [OK] add info to header [OK] add and set Flag [OK] remove info from header [OK] add format to header [OK] remove format from header [OK] set qual [OK] set id [OK] new from string [Suite] genotypes suite [OK] test alts [OK] unknown alts [OK] contig names [Suite] header record [OK] info test [OK] format test [Suite] vcf alleles [OK] update alleles with low-level setters works [OK] update alleles with high-level setters works [Suite] bug suite [OK] csq reader [OK] re-use same header issue 77 [Suite] speed tests 312078 in .. 9.435998106000001 seconds [OK] standard format getter [Suite] vcf indexing suite [OK] index vcf.gz [E::bcf_index_build3] TBI indices for BCF files are not supported [OK] index bcf [Suite] bam-suite [OK] xam_index [OK] test sa sam [OK] test sa bam [OK] cram writing [OK] set aux [OK] set qname [OK] test from string [Suite] stats suite [OK] test fisher 0.09873714670538818 0.002221433773229274 0.002221433773229274 [OK] binomial [Suite] bugs [OK] vcf/bcf subset alts [Suite] test files [OK] that iteration works [OK] file types [E::hts_open_format] Failed to open file "tests/sadfasdfasdfasdf" : No such file or directory [OK] that bad path gives reasonable error message [OK] readLine make[1]: Leaving directory '/build/reproducible-path/nim-hts-0.3.25+ds' create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/nim-hts-dev.substvars debian/nim-hts-examples.substvars rm -fr -- debian/.debhelper/generated/nim-hts-dev/ debian/nim-hts-dev/ debian/tmp/ debian/.debhelper/generated/nim-hts-examples/ debian/nim-hts-examples/ dh_install install -m0755 -d debian/nim-hts-dev/usr/share/nimble/hts/ cp --reflink=auto -a ./src/hts ./src/hts.nim debian/nim-hts-dev/usr/share/nimble/hts// install -m0755 -d debian/nim-hts-examples/usr/share/doc/nim-hts-examples cp --reflink=auto -a ./debian/missing-sources/HG02002.sam ./debian/tests/run-unit-test ./debian/tests/test1.nim ./debian/tests/test2.nim ./tests/HG02002.bam ./tests/HG02002.bam.bai ./tests/HG02002.bam.csi ./tests/aa.fa ./tests/aa.fa.fai ./tests/all.nim ./tests/auxtest.nim ./tests/bamtest.nim ./tests/bgzftest.nim ./tests/cigartest.nim ./tests/decomposed.vcf ./tests/faitest.nim ./tests/flagtest.nim ./tests/htstest.nim ./tests/newsample.vcf ./tests/outmissing.vcf ./tests/outz.vcf ./tests/run.nim ./tests/sa.bam ./tests/sa.bam.bai ./tests/sa.sam ./tests/sample.fa ./tests/sample.fa.fai ./tests/statstests.nim ./tests/test.bcf ./tests/test.bcf.csi ./tests/test_files ./tests/test_files.nim ./tests/test_readme.nim ./tests/unknown-alts.vcf ./tests/vcfiso.nim ./tests/vcftest.nim debian/nim-hts-examples/usr/share/doc/nim-hts-examples/ dh_installdocs install -m0755 -d debian/nim-hts-dev/usr/share/doc/nim-hts-dev install -p -m0644 debian/copyright debian/nim-hts-dev/usr/share/doc/nim-hts-dev/copyright install -p -m0644 debian/copyright debian/nim-hts-examples/usr/share/doc/nim-hts-examples/copyright dh_installchangelogs install -m0755 -d debian/nim-hts-examples/usr/share/doc/nim-hts-examples install -p -m0644 debian/.debhelper/generated/nim-hts-examples/dh_installchangelogs.dch.trimmed debian/nim-hts-examples/usr/share/doc/nim-hts-examples/changelog.Debian install -p -m0644 ./CHANGES.md debian/nim-hts-examples/usr/share/doc/nim-hts-examples/changelog install -m0755 -d debian/nim-hts-dev/usr/share/doc/nim-hts-dev install -p -m0644 debian/.debhelper/generated/nim-hts-dev/dh_installchangelogs.dch.trimmed debian/nim-hts-dev/usr/share/doc/nim-hts-dev/changelog.Debian install -p -m0644 ./CHANGES.md debian/nim-hts-dev/usr/share/doc/nim-hts-dev/changelog dh_perl dh_link dh_strip_nondeterminism dh_compress cd debian/nim-hts-examples cd debian/nim-hts-dev chmod a-x usr/share/doc/nim-hts-dev/changelog usr/share/doc/nim-hts-dev/changelog.Debian chmod a-x usr/share/doc/nim-hts-examples/HG02002.bam usr/share/doc/nim-hts-examples/HG02002.bam.bai usr/share/doc/nim-hts-examples/HG02002.sam usr/share/doc/nim-hts-examples/changelog usr/share/doc/nim-hts-examples/changelog.Debian usr/share/doc/nim-hts-examples/newsample.vcf usr/share/doc/nim-hts-examples/outmissing.vcf usr/share/doc/nim-hts-examples/outz.vcf usr/share/doc/nim-hts-examples/sa.bam usr/share/doc/nim-hts-examples/sa.bam.bai usr/share/doc/nim-hts-examples/sa.sam usr/share/doc/nim-hts-examples/test.bcf usr/share/doc/nim-hts-examples/unknown-alts.vcf usr/share/doc/nim-hts-examples/vcftest.nim gzip -9nf usr/share/doc/nim-hts-examples/HG02002.bam usr/share/doc/nim-hts-examples/HG02002.bam.bai usr/share/doc/nim-hts-examples/HG02002.sam usr/share/doc/nim-hts-examples/changelog usr/share/doc/nim-hts-examples/changelog.Debian usr/share/doc/nim-hts-examples/newsample.vcf usr/share/doc/nim-hts-examples/outmissing.vcf usr/share/doc/nim-hts-examples/outz.vcf usr/share/doc/nim-hts-examples/sa.bam usr/share/doc/nim-hts-examples/sa.bam.bai usr/share/doc/nim-hts-examples/sa.sam usr/share/doc/nim-hts-examples/test.bcf usr/share/doc/nim-hts-examples/unknown-alts.vcf usr/share/doc/nim-hts-examples/vcftest.nim gzip -9nf usr/share/doc/nim-hts-dev/changelog usr/share/doc/nim-hts-dev/changelog.Debian cd '/build/reproducible-path/nim-hts-0.3.25+ds' cd '/build/reproducible-path/nim-hts-0.3.25+ds' dh_fixperms find debian/nim-hts-examples ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/nim-hts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/nim-hts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/nim-hts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/nim-hts-examples/usr/share/doc -type f -a -true -a ! -regex 'debian/nim-hts-examples/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/nim-hts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/nim-hts-examples/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/nim-hts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/nim-hts-examples -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing dh_installdeb install -m0755 -d debian/nim-hts-dev/DEBIAN install -m0755 -d debian/nim-hts-examples/DEBIAN dh_gencontrol install -m0755 -d debian/nim-hts-dev/DEBIAN echo misc:Depends= >> debian/nim-hts-dev.substvars echo misc:Pre-Depends= >> debian/nim-hts-dev.substvars dpkg-gencontrol -pnim-hts-dev -ldebian/changelog -Tdebian/nim-hts-dev.substvars -cdebian/control -Pdebian/nim-hts-dev install -m0755 -d debian/nim-hts-examples/DEBIAN echo misc:Depends= >> debian/nim-hts-examples.substvars echo misc:Pre-Depends= >> debian/nim-hts-examples.substvars dpkg-gencontrol -pnim-hts-examples -ldebian/changelog -Tdebian/nim-hts-examples.substvars -cdebian/control -Pdebian/nim-hts-examples chmod 0644 -- debian/nim-hts-dev/DEBIAN/control chmod 0644 -- debian/nim-hts-examples/DEBIAN/control dh_md5sums install -m0755 -d debian/nim-hts-dev/DEBIAN install -m0755 -d debian/nim-hts-examples/DEBIAN cd debian/nim-hts-examples >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/nim-hts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/nim-hts-examples/DEBIAN/md5sums chmod 0644 -- debian/nim-hts-dev/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/nim-hts-dev .. dpkg-deb --root-owner-group --build debian/nim-hts-examples .. dpkg-deb: building package 'nim-hts-examples' in '../nim-hts-examples_0.3.25+ds-2_all.deb'. dpkg-deb: building package 'nim-hts-dev' in '../nim-hts-dev_0.3.25+ds-2_all.deb'. dpkg-genbuildinfo --build=binary -O../nim-hts_0.3.25+ds-2_amd64.buildinfo dpkg-genchanges --build=binary -O../nim-hts_0.3.25+ds-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2413180 and its subdirectories I: Current time: Tue Jan 6 15:42:26 -12 2026 I: pbuilder-time-stamp: 1767757346 Wed Dec 4 21:19:28 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Wed Dec 4 21:19:28 UTC 2024 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Wed Dec 4 21:22:43 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Wed Dec 4 21:22:44 UTC 2024 I: nim-hts_0.3.25+ds-2_amd64.changes: Format: 1.8 Date: Tue, 03 Dec 2024 11:28:14 +0100 Source: nim-hts Binary: nim-hts-dev nim-hts-examples Architecture: all Version: 0.3.25+ds-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: nim-hts-dev - wrapper for hts C library nim-hts-examples - examples for nim-hts: wrapper for hts C library Changes: nim-hts (0.3.25+ds-2) unstable; urgency=medium . * Team upload. * Drop libhts3 from Test-Depends Checksums-Sha1: ca3b277ab265237d9c79eab86b0b396bef7e4368 36388 nim-hts-dev_0.3.25+ds-2_all.deb a771ecd48fb8d19761374f0a71c3dc32fa8cbc9b 1167848 nim-hts-examples_0.3.25+ds-2_all.deb 3c4f652153925b8a5429110ccc1be4f116327d65 7256 nim-hts_0.3.25+ds-2_amd64.buildinfo Checksums-Sha256: c71e6c19cca10b3355d0c95f6120312423bf9dc72a3429445a351a222d14965b 36388 nim-hts-dev_0.3.25+ds-2_all.deb b6fcaee2cbc9335c2f7958e8aeb93eed68cc18d446245a54031fbce9fcccd08a 1167848 nim-hts-examples_0.3.25+ds-2_all.deb bafff7b7e2276a58647405c6a48b082855c1c623dac16aa804af9d891ba47bff 7256 nim-hts_0.3.25+ds-2_amd64.buildinfo Files: 2a94546349260e871a39196a08251dd6 36388 libs optional nim-hts-dev_0.3.25+ds-2_all.deb ff9a0a0c4c70a5ab3773bf39dea8decb 1167848 libs optional nim-hts-examples_0.3.25+ds-2_all.deb 71bef486e8902e89d0222244b49735fe 7256 libs optional nim-hts_0.3.25+ds-2_amd64.buildinfo Wed Dec 4 21:22:45 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_10-24169.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.AIcfSYnF/nim-hts_0.3.25+ds-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.AIcfSYnF/nim-hts_0.3.25+ds-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.AIcfSYnF/nim-hts_0.3.25+ds-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.AIcfSYnF/b1/nim-hts_0.3.25+ds-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.AIcfSYnF/b2/nim-hts_0.3.25+ds-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.361s) 0.360s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.027s) 0.027s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 673ms CPU time consumed: 673ms Wed Dec 4 21:22:46 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Wed Dec 4 21:22:46 UTC 2024 I: nim-hts from unstable built successfully and reproducibly on amd64. Wed Dec 4 21:22:47 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Dec 4 21:22:47 UTC 2024 I: Submitting 8.0K b1/nim-hts_0.3.25+ds-2_amd64.buildinfo.asc Wed Dec 4 21:22:48 UTC 2024 I: Submitting 8.0K b2/nim-hts_0.3.25+ds-2_amd64.buildinfo.asc Wed Dec 4 21:22:49 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Dec 4 21:22:49 UTC 2024 I: Done submitting .buildinfo files. Wed Dec 4 21:22:49 UTC 2024 I: Removing signed nim-hts_0.3.25+ds-2_amd64.buildinfo.asc files: removed './b1/nim-hts_0.3.25+ds-2_amd64.buildinfo.asc' removed './b2/nim-hts_0.3.25+ds-2_amd64.buildinfo.asc'