Tue Oct 21 20:02:23 UTC 2025 I: starting to build mapdamage/unstable/amd64 on jenkins on '2025-10-21 20:02' Tue Oct 21 20:02:23 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_3/72147/console.log Tue Oct 21 20:02:23 UTC 2025 I: Downloading source for unstable/mapdamage=2.2.3+dfsg-1 --2025-10-21 20:02:24-- http://deb.debian.org/debian/pool/main/m/mapdamage/mapdamage_2.2.3%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2467 (2.4K) [text/prs.lines.tag] Saving to: ‘mapdamage_2.2.3+dfsg-1.dsc’ 0K .. 100% 141M=0s 2025-10-21 20:02:24 (141 MB/s) - ‘mapdamage_2.2.3+dfsg-1.dsc’ saved [2467/2467] Tue Oct 21 20:02:24 UTC 2025 I: mapdamage_2.2.3+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mapdamage Binary: mapdamage Architecture: any Version: 2.2.3+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://ginolhac.github.io/mapDamage/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/mapdamage Vcs-Git: https://salsa.debian.org/med-team/mapdamage.git Testsuite: autopkgtest Testsuite-Triggers: gfortran, r-cran-runit Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev:native, libpython3-all-dev, pybuild-plugin-pyproject, python3-setuptools, python3-pysam , seqtk , r-base-core , r-cran-gam , r-cran-ggplot2 , r-cran-inline Package-List: mapdamage deb science optional arch=any Checksums-Sha1: 9617e2f30e0114a5755dbe02487b16037d0bb7b1 38744 mapdamage_2.2.3+dfsg.orig.tar.xz 4d474eaf005250a57269d57a685a70f28b82bd8c 7116 mapdamage_2.2.3+dfsg-1.debian.tar.xz Checksums-Sha256: 7f4cdd6779a8c22855fd5da51b9aef67011257acaeade33961fe1b73d0141951 38744 mapdamage_2.2.3+dfsg.orig.tar.xz 18ff904c2b511acb6db5c9e34ba3e8764c184d9318fdb9b426f7c0cc940b25b5 7116 mapdamage_2.2.3+dfsg-1.debian.tar.xz Files: 5a790f24f0bef9d34e6b38988500bcb6 38744 mapdamage_2.2.3+dfsg.orig.tar.xz bca51535200371f4f2aa9d3604899dfc 7116 mapdamage_2.2.3+dfsg-1.debian.tar.xz Dgit: 19659459a69a70345c282f04ebaff3d90e61bc9d debian archive/debian/2.2.3+dfsg-1 https://git.dgit.debian.org/mapdamage -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmj2rG0UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpf4g/+JePW/KmG2xnmGMEJDMe/6/aFuCxG 4jw5u+sRK4RV3UJg5FAUPvgyNP/bB+QMqqbYq2Y2l8MyW6kS8FDno7MAL0bLlq3L 9TsZ7B9o4fETdWW6XQuzEgqBvn9yTVW0eTCg0VY66459rHZatbAtxY//2lPCUk9B T1fmH4154QlQzIKnOoCKJxB62XlamC+ieOmCcsf6wGI4Ke3uwGFUoimG4o6Uutfp np9v3IQ+kTmAoHSsEGjqE2EKJOQdQoPFAINo4hCSfZPYHwhBqF9n2vbF/StdMT7J EwrvCyEId9KT/Nx6K/CklEB4SSxj/1FyWcm7JeN5Wnz1zojkZfalTndgN94GnUM4 G1wZ+huTYUl99si+f1DZ/Q6iFpZVuD3cn4Vy8JAI+c9X+0Ofv4NnQCLdjxbqZJPS W51uJEWA298N++xVjvobpXaclvPYP5gSCG/RqEl21AMGp/o1ErBjAcbkX+IFLh8e xWzTp7ZO+7lTDxHoBdG4lKgneDj4qT/9MIKwiwodFSBTkCNz4soP9FSgKCRWKonn zBmGcU1KUtIN2POrVBxTcDfWFcaWot1YvB6VWO6bgkmjJxzByXqnTyIVLb+MOWHj u9rUTePCUFbrX/cUcB3VFtVtdsBu+BxL+4Qo5jMRSHg5h2AzsHKtX4GWFJkvpADh DiWrGRD8CmnBSYw= =zqcR -----END PGP SIGNATURE----- Tue Oct 21 20:02:24 UTC 2025 I: Checking whether the package is not for us Tue Oct 21 20:02:24 UTC 2025 I: Starting 1st build on remote node ionos1-amd64.debian.net. Tue Oct 21 20:02:24 UTC 2025 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Tue Oct 21 20:07:12 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Oct 21 08:02:24 -12 2025 I: pbuilder-time-stamp: 1761076944 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mapdamage_2.2.3+dfsg-1.dsc] I: copying [./mapdamage_2.2.3+dfsg.orig.tar.xz] I: copying [./mapdamage_2.2.3+dfsg-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./mapdamage_2.2.3+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting mapdamage in mapdamage-2.2.3+dfsg dpkg-source: info: unpacking mapdamage_2.2.3+dfsg.orig.tar.xz dpkg-source: info: unpacking mapdamage_2.2.3+dfsg-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2939473/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='6c9c8a9c704f4fc4aa0e25d28ec941d0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2939473' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IF4MOk2v/pbuilderrc_794g --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IF4MOk2v/b1 --logfile b1/build.log mapdamage_2.2.3+dfsg-1.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2939473/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev:native, libpython3-all-dev, pybuild-plugin-pyproject, python3-setuptools, python3-pysam, seqtk, r-base-core, r-cran-gam, r-cran-ggplot2, r-cran-inline dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19858 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev:native. pbuilder-satisfydepends-dummy depends on libpython3-all-dev; however: Package libpython3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on seqtk; however: Package seqtk is not installed. pbuilder-satisfydepends-dummy depends on r-base-core; however: Package r-base-core is not installed. pbuilder-satisfydepends-dummy depends on r-cran-gam; however: Package r-cran-gam is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-inline; however: Package r-cran-inline is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libice6{a} libicu76{a} libidn2-0{a} libjbig0{a} libjpeg62-turbo{a} libjs-sphinxdoc{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libtasn1-6{a} libtcl8.6{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2-16{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} procps{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-build{a} python3-dev{a} python3-inflect{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pyproject-hooks{a} python3-pysam{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} r-base-core{a} r-cran-cli{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-fansi{a} r-cran-farver{a} r-cran-foreach{a} r-cran-gam{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gtable{a} r-cran-inline{a} r-cran-isoband{a} r-cran-iterators{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-mgcv{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-r6{a} r-cran-rcolorbrewer{a} r-cran-rlang{a} r-cran-scales{a} r-cran-tibble{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridislite{a} r-cran-withr{a} readline-common{a} sensible-utils{a} seqtk{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-base-dev r-cran-bench r-cran-bit64 r-cran-blob r-cran-brio r-cran-callr r-cran-covr r-cran-crayon r-cran-dbi r-cran-diagrammer r-cran-dichromat r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-formattable r-cran-fs r-cran-generics r-cran-here r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-interp r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-knitr r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-mapproj r-cran-maps r-cran-multcomp r-cran-mvtnorm r-cran-nanotime r-cran-palmerpenguins r-cran-pkgbuild r-cran-pkgdown r-cran-pkgload r-cran-png r-cran-processx r-cran-profvis r-cran-ps r-cran-purrr r-cran-quantreg r-cran-ragg r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-sf r-cran-shiny r-cran-shinyjs r-cran-stringi r-cran-survival r-cran-svglite r-cran-testthat r-cran-tidyr r-cran-tidyverse r-cran-unitizer r-cran-units r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-viridis r-cran-waldo r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 195 newly installed, 0 to remove and 0 not upgraded. Need to get 127 MB of archives. After unpacking 354 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.4-1 [1496 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get: 30 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 31 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0052 [43.3 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 43 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-2.4 [464 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.46.4-1 [259 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.10-2 [1484 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 82 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.16.0-1 [25.2 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.17.0~rc2-1 [400 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.17.0~rc2-1 [408 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-4 [38.0 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.7.3-1 [165 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-3 [26.6 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 15.2.0-4 [862 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.86.0-5 [1544 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-11 [76.7 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 12.1.0-1 [530 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libhts3t64 amd64 1.22.1+ds2-1 [499 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+26 [217 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.2.3-8 [27.6 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.56.3-2 [239 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.56.3-2 [62.0 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.56.3-2 [38.1 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.9-1 [2184 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.9-1 [5311 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.7-1 [10.5 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.13.7-1 [1068 B] Get: 125 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1041 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.1-1 [361 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.6+ds-1 [11.0 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.6+ds-1 [83.3 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.17-1 [794 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [208 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.46.1-2 [21.7 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 python3-build all 1.2.2-4 [36.2 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 pybuild-plugin-pyproject all 6.20250414 [11.8 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.7-1 [1048 B] Get: 143 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.9-1 [504 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.7-1 [26.1 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.13.7-1 [1068 B] Get: 146 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 157 http://deb.debian.org/debian unstable/main amd64 python3-pysam amd64 0.23.0+ds-1+b1 [3665 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 zip amd64 3.0-15 [235 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 unzip amd64 6.0-29 [173 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 r-base-core amd64 4.5.1-1 [28.7 MB] Get: 162 http://deb.debian.org/debian unstable/main amd64 r-cran-cli amd64 3.6.4-1 [1370 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1716 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 r-cran-fansi amd64 1.0.6-2 [629 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 r-cran-farver amd64 2.1.2-1 [1411 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 r-cran-iterators all 1.0.14-1 [337 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 r-cran-foreach all 1.5.2-1 [122 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 r-cran-gam amd64 1.22-5-1 [395 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 r-cran-glue amd64 1.8.0-1 [165 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 r-cran-rlang amd64 1.1.5-3 [1709 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 r-cran-gtable all 0.3.6+dfsg-1 [228 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 r-cran-isoband amd64 0.2.7-1 [1614 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 r-cran-mass amd64 7.3-65-1 [1113 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 r-cran-lattice amd64 0.22-7-1 [1418 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 r-cran-nlme amd64 3.1.168-1 [2329 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 r-cran-matrix amd64 1.7-4-1 [4144 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 r-cran-mgcv amd64 1.9-3-1 [3378 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 r-cran-labeling all 0.4.3-1 [62.4 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 r-cran-munsell all 0.5.1-1 [237 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 r-cran-r6 all 2.6.1-1 [106 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 r-cran-viridislite all 0.4.2-2 [1299 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 r-cran-scales all 1.3.0-1 [677 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 r-cran-utf8 amd64 1.2.4-1 [133 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [425 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 r-cran-withr all 3.0.2+dfsg-1 [226 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3933 kB] Get: 194 http://deb.debian.org/debian unstable/main amd64 r-cran-inline all 0.3.21-1 [132 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 seqtk amd64 1.4-2 [34.6 kB] Fetched 127 MB in 37s (3390 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19858 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.9-1_amd64.deb ... Unpacking python3.13-minimal (3.13.9-1) ... Setting up libpython3.13-minimal:amd64 (3.13.9-1) ... Setting up libexpat1:amd64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20192 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_amd64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.3-3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_amd64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.6+ds-1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../118-libxft2_2.3.6-1+b4_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b4) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../119-libxss1_1%3a1.2.3-1+b3_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b3) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../120-libtk8.6_8.6.17-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.17-1) ... Selecting previously unselected package libxt6t64:amd64. Preparing to unpack .../121-libxt6t64_1%3a1.2.1-1.3_amd64.deb ... Unpacking libxt6t64:amd64 (1:1.2.1-1.3) ... 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Setting up libglib2.0-0t64:amd64 (2.86.0-5) ... No schema files found: doing nothing. Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libp11-kit0:amd64 (0.25.9-2) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up ucf (3.0052) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libharfbuzz0b:amd64 (12.1.0-1) ... Setting up libxss1:amd64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up libsm6:amd64 (2:1.2.6-1) ... Setting up libpython3.13-stdlib:amd64 (3.13.9-1) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up libpython3.13:amd64 (3.13.9-1) ... Setting up libgnutls30t64:amd64 (3.8.10-2) ... Setting up fontconfig (2.15.0-2.4) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b4) ... Setting up libtirpc3t64:amd64 (1.3.6+ds-1) ... Setting up python3.13 (3.13.9-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:amd64 (8.6.17-1) ... Setting up libpango-1.0-0:amd64 (1.56.3-2) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up python3-packaging (25.0-1) ... Setting up python3-pyproject-hooks (1.2.0-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libpython3.13-dev:amd64 (3.13.9-1) ... Setting up libxt6t64:amd64 (1:1.2.1-1.3) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up libpangoft2-1.0-0:amd64 (1.56.3-2) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.16.0-1) ... Setting up libpangocairo-1.0-0:amd64 (1.56.3-2) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up libpython3-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up libcurl4t64:amd64 (8.17.0~rc2-1) ... Setting up python3.13-dev (3.13.9-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up libcurl3t64-gnutls:amd64 (8.17.0~rc2-1) ... Setting up python3-all (3.13.7-1) ... Setting up debhelper (13.28) ... Setting up python3-wheel (0.46.1-2) ... Setting up python3-inflect (7.5.0-1) ... Setting up libpython3-all-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.7-1) ... Setting up r-base-core (4.5.1-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-labeling (0.4.3-1) ... Setting up r-cran-lattice (0.22-7-1) ... Setting up r-cran-nlme (3.1.168-1) ... Setting up r-cran-farver (2.1.2-1) ... Setting up r-cran-viridislite (0.4.2-2) ... 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Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/mapdamage-2.2.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mapdamage_2.2.3+dfsg-1_source.changes dpkg-buildpackage: info: source package mapdamage dpkg-buildpackage: info: source version 2.2.3+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/mapdamage-2.2.3+dfsg' rm -f mapdamage/_version.py rm -f mapdamage/tests/results/Fragmisincorporation_plot.pdf rm -f mapdamage/tests/results/Length_plot.pdf rm -f mapdamage/tests/fake1.fasta.fai rm -f mapdamage/tests/results/3pGtoA_freq.txt rm -f mapdamage/tests/results/5pCtoT_freq.txt rm -f mapdamage/tests/results/Runtime_log.txt rm -f mapdamage/tests/results/dnacomp.txt rm -f mapdamage/tests/results/lgdistribution.txt rm -f mapdamage/tests/results/misincorporation.txt rm -f mapdamage/tests/test.rescaled.sam make[1]: Leaving directory '/build/reproducible-path/mapdamage-2.2.3+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/mapdamage-2.2.3+dfsg/.pybuild/cpython3_3.13 * Building wheel... No `packages` or `py_modules` configuration, performing automatic discovery. `flat-layout` detected -- analysing . discovered packages -- ['mapdamage', 'mapdamage.seqtk', 'mapdamage.Rscripts', 'mapdamage.tests', 'mapdamage.Rscripts.stats', 'mapdamage.tests.probs'] /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) running bdist_wheel running build running build_py creating build/lib.linux-x86_64-cpython-313/mapdamage copying mapdamage/parseoptions.py -> build/lib.linux-x86_64-cpython-313/mapdamage copying mapdamage/align.py -> build/lib.linux-x86_64-cpython-313/mapdamage copying mapdamage/composition.py -> build/lib.linux-x86_64-cpython-313/mapdamage copying mapdamage/version.py -> build/lib.linux-x86_64-cpython-313/mapdamage copying mapdamage/mp_test.py -> build/lib.linux-x86_64-cpython-313/mapdamage copying mapdamage/__init__.py -> build/lib.linux-x86_64-cpython-313/mapdamage copying mapdamage/tables.py -> build/lib.linux-x86_64-cpython-313/mapdamage copying mapdamage/rscript.py -> build/lib.linux-x86_64-cpython-313/mapdamage copying mapdamage/rescale.py -> build/lib.linux-x86_64-cpython-313/mapdamage copying mapdamage/main.py -> build/lib.linux-x86_64-cpython-313/mapdamage copying mapdamage/__main__.py -> build/lib.linux-x86_64-cpython-313/mapdamage copying mapdamage/seq.py -> build/lib.linux-x86_64-cpython-313/mapdamage running egg_info creating mapdamage.egg-info writing mapdamage.egg-info/PKG-INFO writing dependency_links to mapdamage.egg-info/dependency_links.txt writing entry points to mapdamage.egg-info/entry_points.txt writing requirements to mapdamage.egg-info/requires.txt writing top-level names to mapdamage.egg-info/top_level.txt writing manifest file 'mapdamage.egg-info/SOURCES.txt' reading manifest file 'mapdamage.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'mapdamage.egg-info/SOURCES.txt' creating build/lib.linux-x86_64-cpython-313/mapdamage/Rscripts copying mapdamage/Rscripts/lengths.R -> build/lib.linux-x86_64-cpython-313/mapdamage/Rscripts copying mapdamage/Rscripts/mapDamage.R -> build/lib.linux-x86_64-cpython-313/mapdamage/Rscripts creating build/lib.linux-x86_64-cpython-313/mapdamage/Rscripts/stats copying mapdamage/Rscripts/stats/data.R -> build/lib.linux-x86_64-cpython-313/mapdamage/Rscripts/stats copying mapdamage/Rscripts/stats/priorPropose.R -> build/lib.linux-x86_64-cpython-313/mapdamage/Rscripts/stats copying mapdamage/Rscripts/stats/checkLibraries.R -> build/lib.linux-x86_64-cpython-313/mapdamage/Rscripts/stats copying mapdamage/Rscripts/stats/main.R -> build/lib.linux-x86_64-cpython-313/mapdamage/Rscripts/stats copying mapdamage/Rscripts/stats/start.R -> build/lib.linux-x86_64-cpython-313/mapdamage/Rscripts/stats copying mapdamage/Rscripts/stats/runGeneral.R -> build/lib.linux-x86_64-cpython-313/mapdamage/Rscripts/stats copying mapdamage/Rscripts/stats/postConditonal.R -> build/lib.linux-x86_64-cpython-313/mapdamage/Rscripts/stats copying mapdamage/Rscripts/stats/function.R -> build/lib.linux-x86_64-cpython-313/mapdamage/Rscripts/stats creating build/lib.linux-x86_64-cpython-313/mapdamage/tests copying mapdamage/tests/test.rescaled.correct.sam -> build/lib.linux-x86_64-cpython-313/mapdamage/tests copying mapdamage/tests/dnacomp.txt -> build/lib.linux-x86_64-cpython-313/mapdamage/tests copying mapdamage/tests/fake1.fasta -> build/lib.linux-x86_64-cpython-313/mapdamage/tests copying mapdamage/tests/test.bam -> build/lib.linux-x86_64-cpython-313/mapdamage/tests creating build/lib.linux-x86_64-cpython-313/mapdamage/tests/probs copying mapdamage/tests/probs/Stats_out_MCMC_correct_prob.csv -> build/lib.linux-x86_64-cpython-313/mapdamage/tests/probs creating build/lib.linux-x86_64-cpython-313/mapdamage/seqtk copying mapdamage/seqtk/README.md -> build/lib.linux-x86_64-cpython-313/mapdamage/seqtk copying mapdamage/seqtk/kseq.h -> build/lib.linux-x86_64-cpython-313/mapdamage/seqtk copying mapdamage/seqtk/seqtk.c -> build/lib.linux-x86_64-cpython-313/mapdamage/seqtk running build_ext building 'mapdamage.seqtk' extension creating build/temp.linux-x86_64-cpython-313/mapdamage/seqtk x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapdamage-2.2.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c mapdamage/seqtk/seqtk.c -o build/temp.linux-x86_64-cpython-313/mapdamage/seqtk/seqtk.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapdamage-2.2.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/mapdamage/seqtk/seqtk.o -L/usr/lib/x86_64-linux-gnu -lz -o build/lib.linux-x86_64-cpython-313/mapdamage/seqtk.cpython-313-x86_64-linux-gnu.so installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/mapdamage creating build/bdist.linux-x86_64/wheel/mapdamage/seqtk copying build/lib.linux-x86_64-cpython-313/mapdamage/seqtk/kseq.h -> build/bdist.linux-x86_64/wheel/./mapdamage/seqtk copying build/lib.linux-x86_64-cpython-313/mapdamage/seqtk/seqtk.c -> build/bdist.linux-x86_64/wheel/./mapdamage/seqtk copying build/lib.linux-x86_64-cpython-313/mapdamage/seqtk/README.md -> build/bdist.linux-x86_64/wheel/./mapdamage/seqtk copying build/lib.linux-x86_64-cpython-313/mapdamage/parseoptions.py -> build/bdist.linux-x86_64/wheel/./mapdamage copying build/lib.linux-x86_64-cpython-313/mapdamage/align.py -> build/bdist.linux-x86_64/wheel/./mapdamage copying build/lib.linux-x86_64-cpython-313/mapdamage/composition.py -> build/bdist.linux-x86_64/wheel/./mapdamage copying build/lib.linux-x86_64-cpython-313/mapdamage/version.py -> build/bdist.linux-x86_64/wheel/./mapdamage copying build/lib.linux-x86_64-cpython-313/mapdamage/mp_test.py -> build/bdist.linux-x86_64/wheel/./mapdamage creating build/bdist.linux-x86_64/wheel/mapdamage/Rscripts copying build/lib.linux-x86_64-cpython-313/mapdamage/Rscripts/lengths.R -> build/bdist.linux-x86_64/wheel/./mapdamage/Rscripts creating build/bdist.linux-x86_64/wheel/mapdamage/Rscripts/stats copying build/lib.linux-x86_64-cpython-313/mapdamage/Rscripts/stats/data.R -> build/bdist.linux-x86_64/wheel/./mapdamage/Rscripts/stats copying build/lib.linux-x86_64-cpython-313/mapdamage/Rscripts/stats/priorPropose.R -> build/bdist.linux-x86_64/wheel/./mapdamage/Rscripts/stats copying build/lib.linux-x86_64-cpython-313/mapdamage/Rscripts/stats/checkLibraries.R -> build/bdist.linux-x86_64/wheel/./mapdamage/Rscripts/stats copying build/lib.linux-x86_64-cpython-313/mapdamage/Rscripts/stats/main.R -> build/bdist.linux-x86_64/wheel/./mapdamage/Rscripts/stats copying build/lib.linux-x86_64-cpython-313/mapdamage/Rscripts/stats/start.R -> build/bdist.linux-x86_64/wheel/./mapdamage/Rscripts/stats copying build/lib.linux-x86_64-cpython-313/mapdamage/Rscripts/stats/runGeneral.R -> build/bdist.linux-x86_64/wheel/./mapdamage/Rscripts/stats copying build/lib.linux-x86_64-cpython-313/mapdamage/Rscripts/stats/postConditonal.R -> build/bdist.linux-x86_64/wheel/./mapdamage/Rscripts/stats copying build/lib.linux-x86_64-cpython-313/mapdamage/Rscripts/stats/function.R -> build/bdist.linux-x86_64/wheel/./mapdamage/Rscripts/stats copying build/lib.linux-x86_64-cpython-313/mapdamage/Rscripts/mapDamage.R -> build/bdist.linux-x86_64/wheel/./mapdamage/Rscripts copying build/lib.linux-x86_64-cpython-313/mapdamage/__init__.py -> build/bdist.linux-x86_64/wheel/./mapdamage creating build/bdist.linux-x86_64/wheel/mapdamage/tests copying build/lib.linux-x86_64-cpython-313/mapdamage/tests/test.rescaled.correct.sam -> build/bdist.linux-x86_64/wheel/./mapdamage/tests copying build/lib.linux-x86_64-cpython-313/mapdamage/tests/dnacomp.txt -> build/bdist.linux-x86_64/wheel/./mapdamage/tests copying build/lib.linux-x86_64-cpython-313/mapdamage/tests/fake1.fasta -> build/bdist.linux-x86_64/wheel/./mapdamage/tests copying build/lib.linux-x86_64-cpython-313/mapdamage/tests/test.bam -> build/bdist.linux-x86_64/wheel/./mapdamage/tests creating build/bdist.linux-x86_64/wheel/mapdamage/tests/probs copying build/lib.linux-x86_64-cpython-313/mapdamage/tests/probs/Stats_out_MCMC_correct_prob.csv -> build/bdist.linux-x86_64/wheel/./mapdamage/tests/probs copying build/lib.linux-x86_64-cpython-313/mapdamage/tables.py -> build/bdist.linux-x86_64/wheel/./mapdamage copying build/lib.linux-x86_64-cpython-313/mapdamage/rscript.py -> build/bdist.linux-x86_64/wheel/./mapdamage copying build/lib.linux-x86_64-cpython-313/mapdamage/rescale.py -> build/bdist.linux-x86_64/wheel/./mapdamage copying build/lib.linux-x86_64-cpython-313/mapdamage/main.py -> build/bdist.linux-x86_64/wheel/./mapdamage copying build/lib.linux-x86_64-cpython-313/mapdamage/seqtk.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./mapdamage copying build/lib.linux-x86_64-cpython-313/mapdamage/__main__.py -> build/bdist.linux-x86_64/wheel/./mapdamage copying build/lib.linux-x86_64-cpython-313/mapdamage/seq.py -> build/bdist.linux-x86_64/wheel/./mapdamage running install_egg_info Copying mapdamage.egg-info to build/bdist.linux-x86_64/wheel/./mapdamage-2.2.3.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/mapdamage-2.2.3.dist-info/WHEEL creating '/build/reproducible-path/mapdamage-2.2.3+dfsg/.pybuild/cpython3_3.13/.tmp-n13__tx5/mapdamage-2.2.3-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'mapdamage/__init__.py' adding 'mapdamage/__main__.py' adding 'mapdamage/align.py' adding 'mapdamage/composition.py' adding 'mapdamage/main.py' adding 'mapdamage/mp_test.py' adding 'mapdamage/parseoptions.py' adding 'mapdamage/rescale.py' adding 'mapdamage/rscript.py' adding 'mapdamage/seq.py' adding 'mapdamage/seqtk.cpython-313-x86_64-linux-gnu.so' adding 'mapdamage/tables.py' adding 'mapdamage/version.py' adding 'mapdamage/Rscripts/lengths.R' adding 'mapdamage/Rscripts/mapDamage.R' adding 'mapdamage/Rscripts/stats/checkLibraries.R' adding 'mapdamage/Rscripts/stats/data.R' adding 'mapdamage/Rscripts/stats/function.R' adding 'mapdamage/Rscripts/stats/main.R' adding 'mapdamage/Rscripts/stats/postConditonal.R' adding 'mapdamage/Rscripts/stats/priorPropose.R' adding 'mapdamage/Rscripts/stats/runGeneral.R' adding 'mapdamage/Rscripts/stats/start.R' adding 'mapdamage/seqtk/README.md' adding 'mapdamage/seqtk/kseq.h' adding 'mapdamage/seqtk/seqtk.c' adding 'mapdamage/tests/dnacomp.txt' adding 'mapdamage/tests/fake1.fasta' adding 'mapdamage/tests/test.bam' adding 'mapdamage/tests/test.rescaled.correct.sam' adding 'mapdamage/tests/probs/Stats_out_MCMC_correct_prob.csv' adding 'mapdamage-2.2.3.dist-info/licenses/LICENSE.txt' adding 'mapdamage-2.2.3.dist-info/METADATA' adding 'mapdamage-2.2.3.dist-info/WHEEL' adding 'mapdamage-2.2.3.dist-info/entry_points.txt' adding 'mapdamage-2.2.3.dist-info/top_level.txt' adding 'mapdamage-2.2.3.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built mapdamage-2.2.3-cp313-cp313-linux_x86_64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/mapdamage-2.2.3+dfsg' set -e \ ; for py3 in 3.13 \ ; do cd mapdamage \ ; PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/build/reproducible-path/mapdamage-2.2.3+dfsg/.pybuild/cpython3_${py3}/scripts \ PYTHONPATH=/build/reproducible-path/mapdamage-2.2.3+dfsg/.pybuild/cpython3_3.13/build \ python3 mp_test.py \ ; done Started with the command: /build/reproducible-path/mapdamage-2.2.3+dfsg/.pybuild/cpython3_3.13/scripts/mapDamage -i tests/test.bam -r tests/fake1.fasta -d tests/results --no-stats additional tests/results/Length_plot.pdf generated Successful run Missing the following R libraries 'Rcpp' and 'RcppGSL' The Bayesian estimation has been disabled Reading from 'tests/test.bam' Writing results to 'tests/results/' pdf tests/results/Fragmisincorporation_plot.pdf generated .. ---------------------------------------------------------------------- Ran 2 tests in 5.234s OK make[1]: Leaving directory '/build/reproducible-path/mapdamage-2.2.3+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/mapdamage/ -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/mapdamage-2.2.3+dfsg' dh_python3 --no-ext-rename I: dh_python3 tools:114: replacing shebang in debian/mapdamage/usr/bin/mapDamage make[1]: Leaving directory '/build/reproducible-path/mapdamage-2.2.3+dfsg' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild debian/rules execute_after_dh_fixperms make[1]: Entering directory '/build/reproducible-path/mapdamage-2.2.3+dfsg' find debian -name checkLibraries.R -exec chmod +x \{\} \; find debian -name runGeneral.R -exec chmod +x \{\} \; make[1]: Leaving directory '/build/reproducible-path/mapdamage-2.2.3+dfsg' dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'mapdamage-dbgsym' in '../mapdamage-dbgsym_2.2.3+dfsg-1_amd64.deb'. dpkg-deb: building package 'mapdamage' in '../mapdamage_2.2.3+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../mapdamage_2.2.3+dfsg-1_amd64.buildinfo dpkg-genchanges --build=binary -O../mapdamage_2.2.3+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2939473 and its subdirectories I: Current time: Tue Oct 21 08:07:11 -12 2025 I: pbuilder-time-stamp: 1761077231 Tue Oct 21 20:07:12 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Tue Oct 21 20:07:12 UTC 2025 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Tue Oct 21 20:09:51 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Tue Oct 21 20:09:51 UTC 2025 I: mapdamage_2.2.3+dfsg-1_amd64.changes: Format: 1.8 Date: Mon, 20 Oct 2025 23:33:28 +0200 Source: mapdamage Binary: mapdamage mapdamage-dbgsym Architecture: amd64 Version: 2.2.3+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: mapdamage - tracking and quantifying damage patterns in ancient DNA sequences Changes: mapdamage (2.2.3+dfsg-1) unstable; urgency=medium . * New upstream version 2.2.3+dfsg * d/copyright: restore seqtk. Newer upstream version converted seqtk to a python module, which the native seqtk Debian package does not provide. * use_debian_packaged_seqtk.patch: delete patch. The newer upstream release cannot use the Debian package seqtk anymore. * d/watch: convert to v5 Github template. * d/control: drop redundant Rules-Requires-Root: no. * d/control: declare compliance to standards version 4.7.2. * d/rules: readability improvements. * d/{control,rules}: move to dh-sequence-python3. * d/control: update build-dependencies. Changes notably account for the move to pyproject. * d/rules: adjust dh_auto_test to new mapDamage location. * d/control: mapdamage is now architecture specific. * d/rules: activate binaries hardening. Checksums-Sha1: bb38f0ebaaad597a4b1a7cf2496ad8a6586bdf27 12768 mapdamage-dbgsym_2.2.3+dfsg-1_amd64.deb 5035c03266d85310a99d75e8a8a5ada0e293b26d 9854 mapdamage_2.2.3+dfsg-1_amd64.buildinfo 5505b3ac43664768178fa4a18f565a4b0f779b45 49544 mapdamage_2.2.3+dfsg-1_amd64.deb Checksums-Sha256: 753c41d39d041a5ba80980e05e9e6834db6394c83e5779a24fb1c0fe3cb9c013 12768 mapdamage-dbgsym_2.2.3+dfsg-1_amd64.deb fa55ea1d13dd320092321b2a4045617d36623823161f06358ce8c8950df69fca 9854 mapdamage_2.2.3+dfsg-1_amd64.buildinfo a99ac77bd3f6f74e89b8edaf395072eb4cf1e4747871497d95791f3b171e8be4 49544 mapdamage_2.2.3+dfsg-1_amd64.deb Files: 2916740a3341850d843afdf54b9ddf40 12768 debug optional mapdamage-dbgsym_2.2.3+dfsg-1_amd64.deb 73fdd3ce1f3f84e42756c04a1b39a85a 9854 science optional mapdamage_2.2.3+dfsg-1_amd64.buildinfo daa0e8bc2492dcfbc9b61d22f1cd6a19 49544 science optional mapdamage_2.2.3+dfsg-1_amd64.deb Tue Oct 21 20:09:52 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_3-72147.service; invocation ID: 9310ca17cc984e2483f76a28950866a3 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.IF4MOk2v/mapdamage_2.2.3+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.IF4MOk2v/mapdamage_2.2.3+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.IF4MOk2v/mapdamage_2.2.3+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.IF4MOk2v/b1/mapdamage_2.2.3+dfsg-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.IF4MOk2v/b2/mapdamage_2.2.3+dfsg-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 211ms CPU time consumed: 183ms Memory peak: 17.3M (swap: 0B) Tue Oct 21 20:09:52 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Tue Oct 21 20:09:52 UTC 2025 I: mapdamage from unstable built successfully and reproducibly on amd64. Tue Oct 21 20:09:53 UTC 2025 I: Removing signed mapdamage_2.2.3+dfsg-1_amd64.buildinfo.asc files: removed './b1/mapdamage_2.2.3+dfsg-1_amd64.buildinfo.asc' removed './b2/mapdamage_2.2.3+dfsg-1_amd64.buildinfo.asc'