Tue Jan 28 09:30:40 UTC 2025 I: starting to build libncl/unstable/amd64 on jenkins on '2025-01-28 09:30' Tue Jan 28 09:30:40 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_20/43930/console.log Tue Jan 28 09:30:40 UTC 2025 I: Downloading source for unstable/libncl=2.1.21+git20210811.b1213a7-6 --2025-01-28 09:30:41-- http://deb.debian.org/debian/pool/main/libn/libncl/libncl_2.1.21%2bgit20210811.b1213a7-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2422 (2.4K) [text/prs.lines.tag] Saving to: ‘libncl_2.1.21+git20210811.b1213a7-6.dsc’ 0K .. 100% 334M=0s 2025-01-28 09:30:41 (334 MB/s) - ‘libncl_2.1.21+git20210811.b1213a7-6.dsc’ saved [2422/2422] Tue Jan 28 09:30:41 UTC 2025 I: libncl_2.1.21+git20210811.b1213a7-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libncl Binary: ncl-tools, libncl2, libncl-dev Architecture: any Version: 2.1.21+git20210811.b1213a7-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/mtholder/ncl Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/libncl Vcs-Git: https://salsa.debian.org/med-team/libncl.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), d-shlibs, python3 Package-List: libncl-dev deb libdevel optional arch=any libncl2 deb libs optional arch=any ncl-tools deb science optional arch=any Checksums-Sha1: 2cf4fdf16c8ea4fd7f252aaf1c28d0b1458cb287 544032 libncl_2.1.21+git20210811.b1213a7.orig.tar.xz 2a3b3d70a9f3e915a800ec62f93c27861d882dc8 20292 libncl_2.1.21+git20210811.b1213a7-6.debian.tar.xz Checksums-Sha256: 921db455387828e1e135febd177f7f1c69f4c204d5cadc0d0f47502f6fa608ed 544032 libncl_2.1.21+git20210811.b1213a7.orig.tar.xz 7be3f38ea803136f6776b180235681864d28775710e19b2cec89860bdaea0595 20292 libncl_2.1.21+git20210811.b1213a7-6.debian.tar.xz Files: a3af41d99fe04586c1f61bc942c5614b 544032 libncl_2.1.21+git20210811.b1213a7.orig.tar.xz c17d9c09d67787b7821f7ae519aebab4 20292 libncl_2.1.21+git20210811.b1213a7-6.debian.tar.xz Dgit: 9623cd3f49fcc435d9b3803296d8fbc9fd7dff1c debian archive/debian/2.1.21+git20210811.b1213a7-6 https://git.dgit.debian.org/libncl -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmbLBQkUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpZ3g//eZ0pQ15HbJqS1sYfN/B9Lq045i9e wWMVQBu13LWFO7S0znLq/9s4EAKXocIUWURBDiddvJ5RQ5Kbc8cE0krPjyPpXiX4 ysiG9TPTxc1ZWwBnk2hnrB+xjQ+5UjZhOuMEYlgVMNnF0hxATYzN1XYIchZmGCo1 8nabDimP+gQf/jUMOK8odBn8QRwyNAHg75Kl9lq3D2LiPzg9Gk6AbctCMTuzDfgX bNb1aYk0Sk35iAIv+mH79auk+Ph4E4lTfVQXTHVWpJeuWmRruAp2Fy+EZirU/bRj XGoq6PLwTQIWv3cwnxeczPTV1g0x5VkEWJivJy1rAEX5RNChhzw/nS8TtJpiSRrp jGRxrtVwfzuKkUQk/3FMu+rLTmr5fPT8eLByvMrsGpAP6RMsnDNTEnMKPejanQ/x s2+LS1FdQlhyZM9JafhkuFIPnlLx2hH6FS+8zDUbVazI30HCnR4PJaCzrZLriL8i pvKt28oFWpyHGnEgNcokLSSpoA3dY3ZAQBSa5Jxkh0ts/xWJlRfa8OcE8yfq26BV bL9Se4mo4AQYsRCjbXxKp5e8NoucZFDcSY52qpOwBYdbqiX0r9J5nKkSVw0FoT6z BDrftRzdhM+2emwRgGbFg1IYJ9GI0Eb+y5ahN0jevKJOs2iE8Kha9Zn3aR+naIJh YHnlrc2XcUr0MFg= =15HM -----END PGP SIGNATURE----- Tue Jan 28 09:30:41 UTC 2025 I: Checking whether the package is not for us Tue Jan 28 09:30:41 UTC 2025 I: Starting 1st build on remote node ionos15-amd64.debian.net. Tue Jan 28 09:30:41 UTC 2025 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Tue Jan 28 09:35:20 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Mar 2 03:53:42 -12 2026 I: pbuilder-time-stamp: 1772466822 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libncl_2.1.21+git20210811.b1213a7-6.dsc] I: copying [./libncl_2.1.21+git20210811.b1213a7.orig.tar.xz] I: copying [./libncl_2.1.21+git20210811.b1213a7-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libncl_2.1.21+git20210811.b1213a7-6.dsc: unsupported subcommand dpkg-source: info: extracting libncl in libncl-2.1.21+git20210811.b1213a7 dpkg-source: info: unpacking libncl_2.1.21+git20210811.b1213a7.orig.tar.xz dpkg-source: info: unpacking libncl_2.1.21+git20210811.b1213a7-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_rpath_issue.patch dpkg-source: info: applying set_soname_version.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying python3.11.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/99184/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='3f1faf81fa104896ba45b00db4df1eff' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='99184' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Bl1VUZRZ/pbuilderrc_Jg6X --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Bl1VUZRZ/b1 --logfile b1/build.log libncl_2.1.21+git20210811.b1213a7-6.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/99184/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, python3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19843 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 27.1 MB of archives. After unpacking 103 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.1-3 [858 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.1-3 [2202 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025a-1 [259 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.1-3 [1973 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.1-3 [740 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.1-2 [28.0 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-1 [92.2 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-2 [861 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-2 [539 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 37 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Fetched 27.1 MB in 1s (30.2 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19843 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.1-3_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.1-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.1-3_amd64.deb ... Unpacking python3.13-minimal (3.13.1-3) ... Setting up libpython3.13-minimal:amd64 (3.13.1-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.1-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20177 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.1-2_amd64.deb ... Unpacking python3-minimal (3.13.1-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025a-1_all.deb ... Unpacking tzdata (2025a-1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.4.6-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.6-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.1-3_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.1-3) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.1-3_amd64.deb ... Unpacking python3.13 (3.13.1-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.1-2_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.1-2) ... Setting up python3-minimal (3.13.1-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21187 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.1-2_amd64.deb ... Unpacking python3 (3.13.1-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. 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Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libncl_2.1.21+git20210811.b1213a7-6_source.changes dpkg-buildpackage: info: source package libncl dpkg-buildpackage: info: source version 2.1.21+git20210811.b1213a7-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7' dh_clean find . -name ".roundTripNCL*" -delete make[1]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' configure.ac:28: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:28: You should run autoupdate. config/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:28: the top level configure.ac:42: warning: The macro 'AC_HELP_STRING' is obsolete. configure.ac:42: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... config/ax_cxx_flags.m4:5: AX_CXXFLAGS is expanded from... configure.ac:42: the top level configure.ac:124: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.ac:124: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.ac:124: the top level configure.ac:155: warning: The macro 'AC_HELP_STRING' is obsolete. configure.ac:155: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:155: the top level configure.ac:167: warning: The macro 'AC_HELP_STRING' is obsolete. configure.ac:167: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:167: the top level configure.ac:28: installing 'config/compile' configure.ac:21: installing 'config/missing' example/basiccmdline/Makefile.am: installing 'config/depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7' dh_auto_configure -- --with-constfuncs=yes ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-constfuncs=yes checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking whether UID '1111' is supported by ustar format... yes checking whether GID '1111' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether ln -s works... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ranlib... ranlib checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether C++ compiler works... yes checking for egrep... (cached) /usr/bin/grep -E checking for float.h... yes checking for stdlib.h... (cached) yes checking for _Bool... no checking for stdbool.h that conforms to C99 or later... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking whether struct tm is in sys/time.h or time.h... time.h checking for sys/time.h... yes checking for alarm... yes checking for working mktime... yes checking for working strtod... yes checking for memmove... yes checking for strchr... yes checking for strtol... yes checking for python3... /usr/bin/python3 checking python3 module: subprocess... yes checking whether make sets $(MAKE)... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating example/Makefile config.status: creating example/basiccmdline/Makefile config.status: creating example/check-taxo-nodes/Makefile config.status: creating example/compressor/Makefile config.status: creating example/find-unsupported-edges/Makefile config.status: creating example/gapcode/Makefile config.status: creating example/ot-subtree/Makefile config.status: creating example/ot-tree-inspect/Makefile config.status: creating example/nclsimplest/Makefile config.status: creating example/ncltest/Makefile config.status: creating example/normalizer/Makefile config.status: creating example/patristic/Makefile config.status: creating example/phylobaseinterface/Makefile config.status: creating example/polytomy-count/Makefile config.status: creating example/outdeg1count/Makefile config.status: creating example/splitsinfile/Makefile config.status: creating example/subsetter/Makefile config.status: creating example/translate/Makefile config.status: creating ncl/Makefile config.status: creating test/Makefile config.status: creating nclv2.1.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make[1]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7' dh_auto_build make -j42 make[1]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7' make all-recursive make[2]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7' Making all in ncl make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/ncl' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o nxstoken.lo nxstoken.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o nxstreesblock.lo nxstreesblock.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o nxsunalignedblock.lo nxsunalignedblock.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsdatablock.cpp -fPIC -DPIC -o .libs/nxsdatablock.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsblock.cpp -fPIC -DPIC -o .libs/nxsblock.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsdistancesblock.cpp -fPIC -DPIC -o .libs/nxsdistancesblock.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxscharactersblock.cpp -fPIC -DPIC -o .libs/nxscharactersblock.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxscxxdiscretematrix.cpp -fPIC -DPIC -o .libs/nxscxxdiscretematrix.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxstoken.cpp -fPIC -DPIC -o .libs/nxstoken.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsstring.cpp -fPIC -DPIC -o .libs/nxsstring.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsassumptionsblock.cpp -fPIC -DPIC -o .libs/nxsassumptionsblock.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsmultiformat.cpp -fPIC -DPIC -o .libs/nxsmultiformat.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsexception.cpp -fPIC -DPIC -o .libs/nxsexception.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxstaxablock.cpp -fPIC -DPIC -o .libs/nxstaxablock.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxspublicblocks.cpp -fPIC -DPIC -o .libs/nxspublicblocks.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxssetreader.cpp -fPIC -DPIC -o .libs/nxssetreader.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsunalignedblock.cpp -fPIC -DPIC -o .libs/nxsunalignedblock.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxstaxaassociationblock.cpp -fPIC -DPIC -o .libs/nxstaxaassociationblock.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxstreesblock.cpp -fPIC -DPIC -o .libs/nxstreesblock.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsreader.cpp -fPIC -DPIC -o .libs/nxsreader.o In file included from ../ncl/nxsexception.h:23, from ../ncl/nxsblock.h:24, from nxsblock.cpp:21: ../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from ../ncl/nxsdefs.h:22, from nxsblock.cpp:20: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../ncl/nxsexception.h:23, from nxsexception.cpp:20: ../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/functional:49, from ../ncl/nxsstring.h:26: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../ncl/nxsexception.h:23, from ../ncl/nxsblock.h:24, from ../ncl/nxstaxablock.h:23, from ../ncl/nxsunalignedblock.h:24, from nxsunalignedblock.cpp:21: ../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from ../ncl/nxsdefs.h:22, from ../ncl/nxsunalignedblock.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../ncl/nxsexception.h:23, from ../ncl/nxstoken.h:23, from ../ncl/nxssetreader.h:23, from nxssetreader.cpp:20: ../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from ../ncl/nxssetreader.h:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../ncl/nxsexception.h:23, from ../ncl/nxsblock.h:24, from ../ncl/nxstaxablock.h:23, from ../ncl/nxscharactersblock.h:29, from ../ncl/nxsdatablock.h:23, from nxsdatablock.cpp:20: ../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from ../ncl/nxscharactersblock.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../ncl/nxsexception.h:23, from ../ncl/nxsblock.h:24, from ../ncl/nxstaxablock.h:23, from ../ncl/nxscharactersblock.h:29, from ../ncl/nxscxxdiscretematrix.h:28, from nxscxxdiscretematrix.cpp:20: ../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/streambuf:43, from /usr/include/c++/14/bits/streambuf_iterator.h:35, from /usr/include/c++/14/iterator:66, from nxscxxdiscretematrix.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../ncl/nxsexception.h:23, from ../ncl/nxstoken.h:23, from nxstoken.cpp:22: ../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from nxstoken.cpp:21: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../ncl/nxsexception.h:23, from ../ncl/nxsblock.h:24, from ../ncl/nxstaxablock.h:23, from ../ncl/nxstreesblock.h:25, from nxstreesblock.cpp:23: ../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from nxstreesblock.cpp:20: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../ncl/nxsexception.h:23, from ../ncl/nxsblock.h:24, from ../ncl/nxstaxablock.h:23, from ../ncl/nxsdistancesblock.h:24, from nxsdistancesblock.cpp:23: ../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/iomanip:42, from nxsdistancesblock.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../ncl/nxsexception.h:23, from ../ncl/nxsblock.h:24, from ../ncl/nxspublicblocks.h:24, from nxspublicblocks.cpp:24: ../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from nxspublicblocks.cpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../ncl/nxsexception.h:23, from ../ncl/nxsblock.h:24, from ../ncl/nxstaxablock.h:23, from nxstaxablock.cpp:20: ../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from ../ncl/nxsdefs.h:22, from ../ncl/nxstaxablock.h:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../ncl/nxsexception.h:23, from ../ncl/nxsblock.h:24, from ../ncl/nxsassumptionsblock.h:26, from nxsassumptionsblock.cpp:22: ../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/iomanip:42, from nxsassumptionsblock.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../ncl/nxsexception.h:23, from ../ncl/nxsblock.h:24, from ../ncl/nxstaxablock.h:23, from ../ncl/nxstaxaassociationblock.h:23, from nxstaxaassociationblock.cpp:25: ../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/iomanip:42, from nxstaxaassociationblock.cpp:20: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../ncl/nxsexception.h:23, from ../ncl/nxsblock.h:24, from ../ncl/nxspublicblocks.h:24, from ../ncl/nxsmultiformat.h:25, from nxsmultiformat.cpp:50: ../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from nxsmultiformat.cpp:48: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../ncl/nxsexception.h:23, from ../ncl/nxsblock.h:24, from ../ncl/nxstaxablock.h:23, from ../ncl/nxscharactersblock.h:29, from nxscharactersblock.cpp:26: ../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/iomanip:42, from nxscharactersblock.cpp:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from nxsstring.cpp:25: ../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from ../ncl/nxsdefs.h:22, from nxsstring.cpp:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../ncl/nxsreader.h:24, from nxsreader.cpp:26: ../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/set:62, from nxsreader.cpp:21: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsexception.cpp -o nxsexception.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsstring.cpp -o nxsstring.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxssetreader.cpp -o nxssetreader.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsblock.cpp -o nxsblock.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsdistancesblock.cpp -o nxsdistancesblock.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxstaxaassociationblock.cpp -o nxstaxaassociationblock.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsdatablock.cpp -o nxsdatablock.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxstoken.cpp -o nxstoken.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxstaxablock.cpp -o nxstaxablock.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxscxxdiscretematrix.cpp -o nxscxxdiscretematrix.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsunalignedblock.cpp -o nxsunalignedblock.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsreader.cpp -o nxsreader.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsmultiformat.cpp -o nxsmultiformat.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxspublicblocks.cpp -o nxspublicblocks.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxstreesblock.cpp -o nxstreesblock.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsassumptionsblock.cpp -o nxsassumptionsblock.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxscharactersblock.cpp -o nxscharactersblock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -version-info 2:0:0 -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o libncl.la -rpath /usr/lib/x86_64-linux-gnu nxsassumptionsblock.lo nxsblock.lo nxscharactersblock.lo nxscxxdiscretematrix.lo nxsdatablock.lo nxsdistancesblock.lo nxsexception.lo nxsmultiformat.lo nxspublicblocks.lo nxsreader.lo nxssetreader.lo nxsstring.lo nxstaxablock.lo nxstaxaassociationblock.lo nxstoken.lo nxstreesblock.lo nxsunalignedblock.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o .libs/nxsassumptionsblock.o .libs/nxsblock.o .libs/nxscharactersblock.o .libs/nxscxxdiscretematrix.o .libs/nxsdatablock.o .libs/nxsdistancesblock.o .libs/nxsexception.o .libs/nxsmultiformat.o .libs/nxspublicblocks.o .libs/nxsreader.o .libs/nxssetreader.o .libs/nxsstring.o .libs/nxstaxablock.o .libs/nxstaxaassociationblock.o .libs/nxstoken.o .libs/nxstreesblock.o .libs/nxsunalignedblock.o -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -fstack-protector-strong -Werror=format-security -O3 -flto=auto -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libncl.so.2 -o .libs/libncl.so.2.0.0 libtool: link: (cd ".libs" && rm -f "libncl.so.2" && ln -s "libncl.so.2.0.0" "libncl.so.2") libtool: link: (cd ".libs" && rm -f "libncl.so" && ln -s "libncl.so.2.0.0" "libncl.so") libtool: link: ar cr .libs/libncl.a nxsassumptionsblock.o nxsblock.o nxscharactersblock.o nxscxxdiscretematrix.o nxsdatablock.o nxsdistancesblock.o nxsexception.o nxsmultiformat.o nxspublicblocks.o nxsreader.o nxssetreader.o nxsstring.o nxstaxablock.o nxstaxaassociationblock.o nxstoken.o nxstreesblock.o nxsunalignedblock.o libtool: link: ranlib .libs/libncl.a libtool: link: ( cd ".libs" && rm -f "libncl.la" && ln -s "../libncl.la" "libncl.la" ) make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/ncl' Making all in example make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example' Making all in basiccmdline make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/basiccmdline' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o basiccmdline.o basiccmdline.cpp In file included from ../../ncl/ncl.h:79, from basiccmdline.cpp:20: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o basiccmdline basiccmdline.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/basiccmdline basiccmdline.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/basiccmdline' Making all in check-taxo-nodes make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/check-taxo-nodes' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o checktaxonnodes-checktaxonnodes.o `test -f 'checktaxonnodes.cpp' || echo './'`checktaxonnodes.cpp In file included from ../../ncl/ncl.h:79, from checktaxonnodes.cpp:20: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o checktaxonnodes checktaxonnodes-checktaxonnodes.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/checktaxonnodes checktaxonnodes-checktaxonnodes.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/check-taxo-nodes' Making all in compressor make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/compressor' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NEXUSCharacterCompressor-compressor.o `test -f 'compressor.cpp' || echo './'`compressor.cpp In file included from ../../ncl/nxsexception.h:23, from ../../ncl/nxsblock.h:24, from ../../ncl/nxstaxablock.h:23, from ../../ncl/nxscharactersblock.h:29, from ../../ncl/nxscxxdiscretematrix.h:28, from compressor.cpp:4: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from compressor.cpp:1: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUSCharacterCompressor NEXUSCharacterCompressor-compressor.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSCharacterCompressor NEXUSCharacterCompressor-compressor.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/compressor' Making all in find-unsupported-edges make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/find-unsupported-edges' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o findunsupportededges-findunsupportededges.o `test -f 'findunsupportededges.cpp' || echo './'`findunsupportededges.cpp In file included from ../../ncl/ncl.h:79, from findunsupportededges.cpp:20: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o findunsupportededges findunsupportededges-findunsupportededges.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/findunsupportededges findunsupportededges-findunsupportededges.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/find-unsupported-edges' Making all in gapcode make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/gapcode' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NEXUSgapcode-gapcode.o `test -f 'gapcode.cpp' || echo './'`gapcode.cpp In file included from ../../ncl/ncl.h:79, from gapcode.cpp:46: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUSgapcode NEXUSgapcode-gapcode.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSgapcode NEXUSgapcode-gapcode.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/gapcode' Making all in nclsimplest make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/nclsimplest' g++ -DHAVE_CONFIG_H -I. -I../.. -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o nclsimplest.o nclsimplest.cpp In file included from ../../ncl/ncl.h:79, from nclsimplest.cpp:1: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o nclsimplest nclsimplest.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/nclsimplest nclsimplest.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/nclsimplest' Making all in ncltest make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o ncltest.o ncltest.cpp In file included from ../../ncl/ncl.h:79, from ncltest.cpp:20: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o ncltest ncltest.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncltest ncltest.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest' Making all in normalizer make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o normalizer.o normalizer.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DJUST_VALIDATE_NEXUS -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NEXUSvalidator-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONVERTER_APP -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NCLconverter-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONVERTER_APP -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NCLconverter-us2ml.o `test -f 'us2ml.cpp' || echo './'`us2ml.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONVERTER_APP -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NCLconverter-converter.o `test -f 'converter.cpp' || echo './'`converter.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DJUST_REPORT_NEXUS -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NEXUSinspector-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DTO_NEXML_CONVERTER -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NEX_us2ml-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DTO_NEXML_CONVERTER -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NEX_us2ml-us2ml.o `test -f 'us2ml.cpp' || echo './'`us2ml.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DMULTIFILE_NEXUS_READER -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NEXUSunion-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp In file included from ../../ncl/ncl.h:79, from us2ml.cpp:22: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../ncl/ncl.h:79, from normalizer.cpp:46: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../ncl/ncl.h:79, from converter.cpp:48: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../ncl/ncl.h:79, from normalizer.cpp:46: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../ncl/ncl.h:79, from normalizer.cpp:46: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../ncl/ncl.h:79, from normalizer.cpp:46: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../ncl/ncl.h:79, from normalizer.cpp:46: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../ncl/ncl.h:79, from normalizer.cpp:46: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../ncl/ncl.h:79, from us2ml.cpp:22: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUSnormalizer normalizer.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSnormalizer normalizer.o ../../ncl/.libs/libncl.so /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUSvalidator NEXUSvalidator-normalizer.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSvalidator NEXUSvalidator-normalizer.o ../../ncl/.libs/libncl.so /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUSinspector NEXUSinspector-normalizer.o ../../ncl/libncl.la /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUSunion NEXUSunion-normalizer.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSinspector NEXUSinspector-normalizer.o ../../ncl/.libs/libncl.so libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSunion NEXUSunion-normalizer.o ../../ncl/.libs/libncl.so /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEX_us2ml NEX_us2ml-normalizer.o NEX_us2ml-us2ml.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEX_us2ml NEX_us2ml-normalizer.o NEX_us2ml-us2ml.o ../../ncl/.libs/libncl.so /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NCLconverter NCLconverter-normalizer.o NCLconverter-us2ml.o NCLconverter-converter.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NCLconverter NCLconverter-normalizer.o NCLconverter-us2ml.o NCLconverter-converter.o ../../ncl/.libs/libncl.so normalizer.cpp:102:14: warning: 'substituteSafeTaxaLabels' violates the C++ One Definition Rule [-Wodr] 102 | void substituteSafeTaxaLabels(PublicNexusReader & reader, std::string filepath, bool evenTrivial); | ^ converter.cpp:140:6: note: return value type mismatch 140 | bool substituteSafeTaxaLabels(PublicNexusReader &nexusReader, std::string filepath, bool evenTrivial) | ^ converter.cpp:140:6: note: type 'bool' should match type 'void' converter.cpp:140:6: note: 'substituteSafeTaxaLabels' was previously declared here make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer' Making all in ot-subtree make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-subtree' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o otsubtree-otsubtree.o `test -f 'otsubtree.cpp' || echo './'`otsubtree.cpp In file included from ../../ncl/ncl.h:79, from otsubtree.cpp:20: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o otsubtree otsubtree-otsubtree.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/otsubtree otsubtree-otsubtree.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-subtree' Making all in ot-tree-inspect make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-tree-inspect' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o otTreeInspect-ot_tree_inspect.o `test -f 'ot_tree_inspect.cpp' || echo './'`ot_tree_inspect.cpp In file included from ../../ncl/ncl.h:79, from ot_tree_inspect.cpp:46: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o otTreeInspect otTreeInspect-ot_tree_inspect.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/otTreeInspect otTreeInspect-ot_tree_inspect.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-tree-inspect' Making all in outdeg1count make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/outdeg1count' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o outdeg1count-outdeg1count.o `test -f 'outdeg1count.cpp' || echo './'`outdeg1count.cpp In file included from ../../ncl/ncl.h:79, from outdeg1count.cpp:46: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o outdeg1count outdeg1count-outdeg1count.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/outdeg1count outdeg1count-outdeg1count.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/outdeg1count' Making all in patristic make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/patristic' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o patristic.o patristic.cpp In file included from ../../ncl/ncl.h:79, from patristic.cpp:33: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o patristicmat patristic.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/patristicmat patristic.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/patristic' Making all in phylobaseinterface make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/phylobaseinterface' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NCLInterface.o NCLInterface.cpp In file included from ../../ncl/ncl.h:79, from NCLInterface.cpp:24: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o PhylobaseNCLInterfaceExample NCLInterface.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/PhylobaseNCLInterfaceExample NCLInterface.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/phylobaseinterface' Making all in polytomy-count make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/polytomy-count' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o polytomycount-polytomy_count.o `test -f 'polytomy_count.cpp' || echo './'`polytomy_count.cpp In file included from ../../ncl/ncl.h:79, from polytomy_count.cpp:46: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o polytomycount polytomycount-polytomy_count.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/polytomycount polytomycount-polytomy_count.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/polytomy-count' Making all in splitsinfile make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/splitsinfile' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NEXUStosplits-splitsinfile.o `test -f 'splitsinfile.cpp' || echo './'`splitsinfile.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NEXUStosplits-splitsstructs.o `test -f 'splitsstructs.cpp' || echo './'`splitsstructs.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o splitsinfile.o splitsinfile.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o splitsstructs.o splitsstructs.cpp In file included from ../../ncl/nxsexception.h:23, from ../../ncl/nxsblock.h:24, from ../../ncl/nxstaxablock.h:23, from ../../ncl/nxstreesblock.h:25, from splitsstructs.h:9, from splitsstructs.cpp:1: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from splitsstructs.h:3: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../ncl/nxsexception.h:23, from ../../ncl/nxsblock.h:24, from ../../ncl/nxstaxablock.h:23, from ../../ncl/nxstreesblock.h:25, from splitsstructs.h:9, from splitsstructs.cpp:1: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from splitsstructs.h:3: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../ncl/ncl.h:79, from splitsinfile.cpp:46: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../ncl/ncl.h:79, from splitsinfile.cpp:46: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o majrule splitsinfile.o splitsstructs.o ../../ncl/libncl.la /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUStosplits NEXUStosplits-splitsinfile.o NEXUStosplits-splitsstructs.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/majrule splitsinfile.o splitsstructs.o ../../ncl/.libs/libncl.so libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUStosplits NEXUStosplits-splitsinfile.o NEXUStosplits-splitsstructs.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/splitsinfile' Making all in subsetter make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/subsetter' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NEXUSsubsetter-subsetter.o `test -f 'subsetter.cpp' || echo './'`subsetter.cpp In file included from ../../ncl/nxsexception.h:23, from ../../ncl/nxsblock.h:24, from ../../ncl/nxspublicblocks.h:24, from ../../ncl/nxsmultiformat.h:25, from subsetter.cpp:4: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from subsetter.cpp:1: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUSsubsetter NEXUSsubsetter-subsetter.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSsubsetter NEXUSsubsetter-subsetter.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/subsetter' Making all in translate make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NEXUStranslate-translateNuc.o `test -f 'translateNuc.cpp' || echo './'`translateNuc.cpp In file included from ../../ncl/ncl.h:79, from translateNuc.cpp:46: ../../ncl/nxsstring.h:266:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUStranslate NEXUStranslate-translateNuc.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUStranslate NEXUStranslate-translateNuc.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate' make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example' Making all in test make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test' make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7' make[2]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7' make[1]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7' dh_auto_test make -j42 check "TESTSUITEFLAGS=-j42 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7' Making check in ncl make[2]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/ncl' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/ncl' Making check in example make[2]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example' Making check in basiccmdline make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/basiccmdline' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/basiccmdline' Making check in check-taxo-nodes make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/check-taxo-nodes' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/check-taxo-nodes' Making check in compressor make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/compressor' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/compressor' Making check in find-unsupported-edges make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/find-unsupported-edges' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/find-unsupported-edges' Making check in gapcode make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/gapcode' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/gapcode' Making check in nclsimplest make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/nclsimplest' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/nclsimplest' Making check in ncltest make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest' make check-local make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest' /usr/bin/python3 ../../test/roundTripNCLTest.py ../../example/ncltest/ncltest ../../test/OldValidIn ../../test/OldValidOut "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest/ncltest" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/OldValidIn/m.nex" [Reading -s2 ] [Reading -s2 ] storing read block: TAXA storing read block: CHARACTERS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest/ncltest succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/OldValidIn/m.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest/ncltest" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/OldValidOut/m.nex" [Reading -s2 ] [Reading -s2 ] storing read block: TAXA storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest/ncltest succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/OldValidOut/m.nex make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest' Making check in normalizer make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer' make check-local make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer' /usr/bin/python3 ../../test/roundTripNCLTest.py ../../example/normalizer/NEXUSnormalizer ../../data/characters.nex ../../test/data "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/data/characters.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/data/characters.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/data/characters.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/data/characters.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/data/characters.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/data/characters.nex /usr/bin/python3 ../../test/roundTripNCLTest.py ../../example/normalizer/NEXUSnormalizer ../../data/sample.tre ../../test/data "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/data/sample.tre" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/data/sample.tre ] Executing storing read block: PAUP storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/data/sample.tre "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/data/sample.tre" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/data/sample.tre ] Executing storing read block: PAUP storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/data/sample.tre /usr/bin/python3 ../../test/roundTripNCLTest.py ../../example/normalizer//NEXUSnormalizer ../../test/NTSValidIn ../../test/NTSValidOut "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/replicase.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/replicase.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/replicase.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/replicase.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/replicase.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/replicase.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-bush-unix.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-bush-unix.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-bush-unix.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-bush-unix.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-bush-unix.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-bush-unix.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-bush-mixed-line-endings.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-bush-mixed-line-endings.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-bush-mixed-line-endings.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-bush-mixed-line-endings.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-bush-mixed-line-endings.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-bush-mixed-line-endings.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/primates.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/primates.nex ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/primates.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/primates.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/primates.nex ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/primates.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/dzmissing_bug.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/dzmissing_bug.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: ASSUMPTIONS storing read block: MACCLADE ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/dzmissing_bug.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/dzmissing_bug.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/dzmissing_bug.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: ASSUMPTIONS storing read block: MACCLADE ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/dzmissing_bug.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-bush-mac.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-bush-mac.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-bush-mac.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-bush-mac.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-bush-mac.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-bush-mac.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/mdata.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/mdata.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/mdata.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/mdata.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/mdata.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: SETS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/mdata.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/t.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/t.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/t.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/t.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/t.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/t.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/cynmix.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/cynmix.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/cynmix.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/cynmix.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/cynmix.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/cynmix.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/m.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/m.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/m.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/m.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/m.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: SETS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/m.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/kim.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/kim.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/kim.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/kim.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/kim.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/kim.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/linktest.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/linktest.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 189) storing read block: TAXA Warning: Skipping command: blockid at line 27, column (approximately) 11 (file position 388) storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS Warning: Skipping unknown LINK subcommand: characters at line 61, column (approximately) 38 (file position 1551) storing read block: TREES Warning: Skipping unknown LINK subcommand: characters at line 71, column (approximately) 38 (file position 1745) storing read block: TREES storing implied block: ASSUMPTIONS storing implied block: ASSUMPTIONS storing read block: ASSUMPTIONS Warning: A TaxSet with the name o has already been encountered. The later definition will preempt the earlier definition(s). at line 90, column (approximately) 42 (file position 2360) storing read block: ASSUMPTIONS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/linktest.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/linktest.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/linktest.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 168) storing read block: TAXA Warning: Skipping command: blockid at line 12, column (approximately) 13 (file position 341) storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: TREES storing read block: TREES storing read block: SETS storing read block: SETS storing read block: SETS Warning: A TaxSet with the name o has already been encountered. The later definition will preempt the earlier definition(s). at line 84, column (approximately) 20 (file position 2384) storing read block: SETS storing read block: SETS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/linktest.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/paup_characters.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/paup_characters.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 176) storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/paup_characters.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/paup_characters.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/paup_characters.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 188) storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/paup_characters.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/bglobin.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/bglobin.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/bglobin.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/bglobin.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/bglobin.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/bglobin.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/partitions.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/partitions.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 176) storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: SETS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/partitions.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/partitions.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/partitions.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 183) storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: SETS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/partitions.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/unaligned.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/unaligned.nex ] Executing storing read block: TAXA storing read block: UNALIGNED ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/unaligned.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/unaligned.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/unaligned.nex ] Executing storing read block: TAXA storing read block: UNALIGNED ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/unaligned.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/notaxablock-quotes.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/notaxablock-quotes.nex ] Executing Warning: A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block. at line 3, column (approximately) 7 (file position 26) storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/notaxablock-quotes.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/notaxablock-quotes.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/notaxablock-quotes.nex ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/notaxablock-quotes.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/anolis.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/anolis.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/anolis.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/anolis.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/anolis.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/anolis.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/characters.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/characters.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 176) storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/characters.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/characters.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/characters.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 183) storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/characters.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/avian_ovomucoids.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/avian_ovomucoids.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/avian_ovomucoids.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/avian_ovomucoids.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/avian_ovomucoids.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/avian_ovomucoids.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/nhxtree.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/nhxtree.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: CODONS Warning: An * is ignored in a CHARSET command at line 67, column (approximately) 46 (file position 1014) Warning: An * is ignored in a CHARSET command at line 68, column (approximately) 42 (file position 1053) storing read block: ASSUMPTIONS storing read block: ASSUMPTIONS storing read block: MESQUITECHARMODELS storing read block: MESQUITE ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/nhxtree.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/nhxtree.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/nhxtree.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: CODONS storing read block: SETS storing read block: ASSUMPTIONS storing read block: MESQUITECHARMODELS storing read block: MESQUITE ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/nhxtree.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/distances.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/distances.nex ] Executing storing read block: TAXA storing read block: DISTANCES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/distances.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/distances.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/distances.nex ] Executing storing read block: TAXA storing read block: DISTANCES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/distances.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/adh.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/adh.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/adh.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/adh.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/adh.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/adh.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/protein.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/protein.nex ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/protein.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/protein.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/protein.nex ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/protein.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/notaxablock.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/notaxablock.nex ] Executing Warning: A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block. at line 3, column (approximately) 13 (file position 32) storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/notaxablock.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/notaxablock.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/notaxablock.nex ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/notaxablock.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-bush-dos.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-bush-dos.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-bush-dos.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-bush-dos.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-bush-dos.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-bush-dos.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/charsets.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/charsets.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 176) storing read block: TAXA storing read block: CHARACTERS storing read block: SETS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/charsets.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/charsets.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/charsets.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 183) storing read block: TAXA storing read block: CHARACTERS storing read block: SETS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/charsets.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/treeswithouttaxa.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/treeswithouttaxa.nex ] Executing Warning: A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block. at line 3, column (approximately) 10 (file position 26) storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/treeswithouttaxa.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/treeswithouttaxa.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/treeswithouttaxa.nex ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/treeswithouttaxa.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-rake.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-rake.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: CODONS Warning: An * is ignored in a CHARSET command at line 67, column (approximately) 46 (file position 929) Warning: An * is ignored in a CHARSET command at line 68, column (approximately) 42 (file position 968) storing read block: ASSUMPTIONS storing read block: ASSUMPTIONS storing read block: MESQUITECHARMODELS storing read block: MESQUITE ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-rake.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-rake.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-rake.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: CODONS storing read block: SETS storing read block: ASSUMPTIONS storing read block: MESQUITECHARMODELS storing read block: MESQUITE ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-rake.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/associates.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/associates.nex ] Executing storing read block: TAXA storing read block: TAXA storing read block: TAXAASSOCIATION ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/associates.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/associates.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/associates.nex ] Executing storing read block: TAXA storing read block: TAXA storing read block: TAXAASSOCIATION ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/associates.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/parens_intree.tre" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/parens_intree.tre ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/parens_intree.tre "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/parens_intree.tre" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/parens_intree.tre ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/parens_intree.tre /usr/bin/python3 ../../test/roundTripNCLTest.py -x ../../example/normalizer/NEXUSnormalizer ../../test/funkyValidIn ../../test/funkyValidOut "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-x" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/funkyValidIn/choke.tre" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/funkyValidIn/choke.tre ] Executing Warning: A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block. at line 5, column (approximately) 6 (file position 74) storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/funkyValidIn/choke.tre "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-x" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/funkyValidOut/choke.tre" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/funkyValidOut/choke.tre ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/funkyValidOut/choke.tre /usr/bin/python3 ../../test/roundTripNCLTest.py -e ../../example/normalizer/NEXUSnormalizer ../../test/ExternalValidIn ../../test/ExternalValidOut "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-fphyliptree" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/phyliptree_simple.phy" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/phyliptree_simple.phy ] Executing storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/phyliptree_simple.phy "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/phyliptree_simple.phy" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/phyliptree_simple.phy ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/phyliptree_simple.phy "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-faarelaxedphylip" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aarelaxedphylip_rana.phy" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aarelaxedphylip_rana.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aarelaxedphylip_rana.phy "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aarelaxedphylip_rana.phy" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aarelaxedphylip_rana.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aarelaxedphylip_rana.phy "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-fdnarelaxedphylip" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/dnarelaxedphylip_brana.phy" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/dnarelaxedphylip_brana.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/dnarelaxedphylip_brana.phy "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/dnarelaxedphylip_brana.phy" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/dnarelaxedphylip_brana.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/dnarelaxedphylip_brana.phy "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-faaphylip" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aaphylip_emboss.phy" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aaphylip_emboss.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aaphylip_emboss.phy "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aaphylip_emboss.phy" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aaphylip_emboss.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aaphylip_emboss.phy "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-fdnarelaxedphylip" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/dnarelaxedphylip_rana.phy" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/dnarelaxedphylip_rana.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/dnarelaxedphylip_rana.phy "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/dnarelaxedphylip_rana.phy" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/dnarelaxedphylip_rana.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/dnarelaxedphylip_rana.phy "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-frelaxedphyliptree" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/relaxedphyliptree_q.phy" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/relaxedphyliptree_q.phy ] Executing storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/relaxedphyliptree_q.phy "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/relaxedphyliptree_q.phy" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/relaxedphyliptree_q.phy ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/relaxedphyliptree_q.phy "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-faaphylipinterleaved" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aaphylipinterleaved_emboss.phy" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aaphylipinterleaved_emboss.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aaphylipinterleaved_emboss.phy "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aaphylipinterleaved_emboss.phy" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aaphylipinterleaved_emboss.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aaphylipinterleaved_emboss.phy "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-faafasta" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aafasta_twoprot.fas" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aafasta_twoprot.fas ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aafasta_twoprot.fas "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aafasta_twoprot.fas" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aafasta_twoprot.fas ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aafasta_twoprot.fas "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-faaaln" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aaaln_twoprot_undec.aln" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aaaln_twoprot_undec.aln ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aaaln_twoprot_undec.aln "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aaaln_twoprot_undec.aln" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aaaln_twoprot_undec.aln ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aaaln_twoprot_undec.aln "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-faaaln" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aaaln_twoprot.aln" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aaaln_twoprot.aln ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aaaln_twoprot.aln "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aaaln_twoprot.aln" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aaaln_twoprot.aln ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aaaln_twoprot.aln /usr/bin/python3 ../../test/roundTripNCLTest.py -i -e ../../example/normalizer/NEXUSnormalizer ../../test/ExternalInvalidIn "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-faarelaxedphylip" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalInvalidIn/aarelaxedphylip_rana.phy" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalInvalidIn/aarelaxedphylip_rana.phy ] Executing Error: Sequence longer than 1976 found for taxon temporariaDMH84R1. The character "o" was found, and will be ignored. If the file position of this error corresponds to sequences for the next taxon in the matrix, then that is an indication that the sequences for taxon temporariaDMH84R1 are too short. at line 3, column (approximately) 2 (and file position 2011) "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-fdnarelaxedphylip" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalInvalidIn/dnarelaxedphylip_rana.phy" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalInvalidIn/dnarelaxedphylip_rana.phy ] Executing Error: Illegal state code "q" found when reading site 2 for taxon grylioMVZ175945 at line 12, column (approximately) 28 (and file position 20065) /usr/bin/python3 ../../test/roundTripNCLTest.py -a ../../example/normalizer/NEXUSnormalizer /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/.debhelper/generated/_source/home/.ncl_round_triprc does not exist. Test stepped skipped. make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer' Making check in ot-subtree make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-subtree' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-subtree' Making check in ot-tree-inspect make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-tree-inspect' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-tree-inspect' Making check in outdeg1count make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/outdeg1count' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/outdeg1count' Making check in patristic make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/patristic' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/patristic' Making check in phylobaseinterface make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/phylobaseinterface' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/phylobaseinterface' Making check in polytomy-count make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/polytomy-count' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/polytomy-count' Making check in splitsinfile make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/splitsinfile' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/splitsinfile' Making check in subsetter make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/subsetter' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/subsetter' Making check in translate make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate' make check-local make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate' /usr/bin/python3 ../../test/roundTripNCLTest.py -o ../../example/translate/NEXUStranslate ../../test/TranslateIn ../../test/TranslateOut "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate/NEXUStranslate" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/TranslateIn/bglobin.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/TranslateIn/bglobin.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate/NEXUStranslate succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/TranslateIn/bglobin.nex "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate/NEXUStranslate" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/TranslateIn/bglobinoof.nex" [Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/TranslateIn/bglobinoof.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: CODONS ../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate/NEXUStranslate succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/TranslateIn/bglobinoof.nex make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate' make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example' make[2]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example' Making check in test make[2]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test' make[2]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7' make[2]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7' make[1]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/libncl-2.1.21\+git20210811.b1213a7/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7' Making install in ncl make[2]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/ncl' make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/ncl' /usr/bin/mkdir -p '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libncl.la '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libncl.so.2.0.0 /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.so.2.0.0 libtool: install: (cd /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libncl.so.2.0.0 libncl.so.2 || { rm -f libncl.so.2 && ln -s libncl.so.2.0.0 libncl.so.2; }; }) libtool: install: (cd /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libncl.so.2.0.0 libncl.so || { rm -f libncl.so && ln -s libncl.so.2.0.0 libncl.so; }; }) libtool: install: /usr/bin/install -c .libs/libncl.lai /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.la libtool: install: /usr/bin/install -c .libs/libncl.a /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.a libtool: install: chmod 644 /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.a libtool: install: ranlib /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/include/ncl' /usr/bin/install -c -m 644 ncl.h nxsallocatematrix.h nxsassumptionsblock.h nxsblock.cpp nxsblock.h nxscharactersblock.h nxscdiscretematrix.h nxscxxdiscretematrix.h nxsdatablock.h nxsdefs.h nxsdiscretedatum.h nxsdistancedatum.h nxsdistancesblock.h nxsexception.h nxsmultiformat.h nxspublicblocks.h nxsreader.h nxssetreader.h nxsstring.h nxstaxablock.h nxstaxaassociationblock.h nxstoken.h nxstreesblock.h nxsunalignedblock.h nxsutilcopy.h '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/include/ncl' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/ncl' make[2]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/ncl' Making install in example make[2]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example' Making install in basiccmdline make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/basiccmdline' make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/basiccmdline' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/basiccmdline' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/basiccmdline' Making install in check-taxo-nodes make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/check-taxo-nodes' make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/check-taxo-nodes' /usr/bin/mkdir -p '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c checktaxonnodes '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/checktaxonnodes /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin/checktaxonnodes make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/check-taxo-nodes' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/check-taxo-nodes' Making install in compressor make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/compressor' make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/compressor' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/compressor' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/compressor' Making install in find-unsupported-edges make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/find-unsupported-edges' make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/find-unsupported-edges' /usr/bin/mkdir -p '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c findunsupportededges '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/findunsupportededges /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin/findunsupportededges make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/find-unsupported-edges' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/find-unsupported-edges' Making install in gapcode make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/gapcode' make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/gapcode' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/gapcode' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/gapcode' Making install in nclsimplest make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/nclsimplest' make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/nclsimplest' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/nclsimplest' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/nclsimplest' Making install in ncltest make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest' make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest' Making install in normalizer make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer' make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer' /usr/bin/mkdir -p '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c NEXUSnormalizer NEXUSvalidator NCLconverter '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/NEXUSnormalizer /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin/NEXUSnormalizer libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/NEXUSvalidator /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin/NEXUSvalidator libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/NCLconverter /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin/NCLconverter make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer' Making install in ot-subtree make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-subtree' make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-subtree' /usr/bin/mkdir -p '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c otsubtree '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/otsubtree /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin/otsubtree make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-subtree' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-subtree' Making install in ot-tree-inspect make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-tree-inspect' make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-tree-inspect' /usr/bin/mkdir -p '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c otTreeInspect '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/otTreeInspect /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin/otTreeInspect make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-tree-inspect' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-tree-inspect' Making install in outdeg1count make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/outdeg1count' make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/outdeg1count' /usr/bin/mkdir -p '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c outdeg1count '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/outdeg1count /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin/outdeg1count make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/outdeg1count' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/outdeg1count' Making install in patristic make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/patristic' make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/patristic' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/patristic' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/patristic' Making install in phylobaseinterface make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/phylobaseinterface' make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/phylobaseinterface' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/phylobaseinterface' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/phylobaseinterface' Making install in polytomy-count make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/polytomy-count' make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/polytomy-count' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/polytomy-count' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/polytomy-count' Making install in splitsinfile make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/splitsinfile' make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/splitsinfile' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/splitsinfile' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/splitsinfile' Making install in subsetter make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/subsetter' make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/subsetter' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/subsetter' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/subsetter' Making install in translate make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate' make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate' make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example' make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example' make[2]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example' Making install in test make[2]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test' make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test' make[2]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test' make[2]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7' make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 nclv2.1.pc '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7' make[2]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7' make[1]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --movedev "debian/tmp/usr/include/ncl/*.h" usr/include/ncl \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/libncl.so Library package automatic movement utility set -e install -d -m 755 debian/libncl-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libncl2/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libncl.a debian/libncl-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libncl.la debian/libncl-dev/usr/lib/x86_64-linux-gnu || true mv debian/tmp/usr/lib/x86_64-linux-gnu/libncl.so debian/libncl-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.so.2 debian/libncl2/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.so.2.0.0 debian/libncl2/usr/lib/x86_64-linux-gnu PKGDEV=libncl-dev PKGSHL=libncl2 install -d -m 755 debian/libncl-dev/usr/include/ncl mv debian/tmp/usr/include/ncl/*.h debian/libncl-dev/usr/include/ncl install -d -m 755 debian/libncl-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libncl-dev/usr/lib/x86_64-linux-gnu/pkgconfig rm -f debian/tmp/usr/include/ncl/nxsblock.cpp make[1]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: warning: debian/libncl2/DEBIAN/symbols doesn't match completely debian/libncl2.symbols.amd64 --- debian/libncl2.symbols.amd64 (libncl2_2.1.21+git20210811.b1213a7-6_amd64) +++ dpkg-gensymbolsVbVa4V 2026-03-02 03:58:13.205443177 -1200 @@ -1,7 +1,7 @@ libncl.so.2 libncl2 #MINVER# * Build-Depends-Package: libncl-dev _Z10fileExistsRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 - (optional)_Z15DeleteTwoDArrayIaEvRPPT_@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_Z15DeleteTwoDArrayIaEvRPPT_@Base 2.1.18 _Z15parseNHXCommentNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3mapIS4_S4_St4lessIS4_ESaISt4pairIKS4_S4_EEE@Base 2.1.18 _Z16disambiguateNameRKSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjSt4lessIS5_ESaISt4pairIKS5_jEEERKSt3setIjS6_IjESaIjEER9NxsStringPKcb@Base 2.1.21+git20171002.4becff7 _Z18NxsWriteSetCommandPKcRKSt3mapI9NxsStringSt3setIjSt4lessIjESaIjEES4_IS2_ESaISt4pairIKS2_S7_EEERSoS0_@Base 2.1.18 @@ -29,9 +29,9 @@ _ZN12NxsDataBlock5ResetEv@Base 2.1.18 _ZN12NxsDataBlockC1EP15NxsTaxaBlockAPIP22NxsAssumptionsBlockAPI@Base 2.1.18 _ZN12NxsDataBlockC2EP15NxsTaxaBlockAPIP22NxsAssumptionsBlockAPI@Base 2.1.18 - (optional)_ZN12NxsDataBlockD0Ev@Base 2.1.18 - (optional)_ZN12NxsDataBlockD1Ev@Base 2.1.18 - (optional)_ZN12NxsDataBlockD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsDataBlockD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsDataBlockD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsDataBlockD2Ev@Base 2.1.18 _ZN12NxsException15addPositionInfoERK15NxsTokenPosInfo@Base 2.1.18 _ZN12NxsException15addPositionInfoERK17ProcessedNxsToken@Base 2.1.18 _ZN12NxsException15addPositionInfoERK8NxsToken@Base 2.1.18 @@ -40,15 +40,15 @@ _ZN12NxsExceptionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK17ProcessedNxsToken@Base 2.1.18 _ZN12NxsExceptionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK8NxsToken@Base 2.1.18 _ZN12NxsExceptionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4fposI11__mbstate_tEll@Base 2.1.18 - (optional)_ZN12NxsExceptionC1ERKS_@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsExceptionC1ERKS_@Base 2.1.18 _ZN12NxsExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK15NxsTokenPosInfo@Base 2.1.18 _ZN12NxsExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK17ProcessedNxsToken@Base 2.1.18 _ZN12NxsExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK8NxsToken@Base 2.1.18 _ZN12NxsExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4fposI11__mbstate_tEll@Base 2.1.18 - (optional)_ZN12NxsExceptionC2ERKS_@Base 2.1.18 - (optional)_ZN12NxsExceptionD0Ev@Base 2.1.18 - (optional)_ZN12NxsExceptionD1Ev@Base 2.1.18 - (optional)_ZN12NxsExceptionD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsExceptionC2ERKS_@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsExceptionD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsExceptionD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsExceptionD2Ev@Base 2.1.18 _ZN12NxsSetReader13AddRangeToSetEjjjPSt3setIjSt4lessIjESaIjEEPKS4_R8NxsToken@Base 2.1.18 _ZN12NxsSetReader13GetTokenValueEv@Base 2.1.18 _ZN12NxsSetReader14GetSetAsVectorERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 @@ -60,15 +60,15 @@ _ZN12NxsSetReaderC1ER8NxsTokenjRSt3setIjSt4lessIjESaIjEER8NxsBlockj@Base 2.1.18 _ZN12NxsSetReaderC2ER8NxsTokenjRSt3setIjSt4lessIjESaIjEER8NxsBlockj@Base 2.1.18 _ZN12NxsTaxaBlock11NeedsQuotesEj@Base 2.1.18 - (optional)_ZN12NxsTaxaBlock12ActivateTaxaERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 - (optional)_ZN12NxsTaxaBlock13ActivateTaxonEj@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsTaxaBlock12ActivateTaxaERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsTaxaBlock13ActivateTaxonEj@Base 2.1.18 _ZN12NxsTaxaBlock13AddTaxonLabelERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN12NxsTaxaBlock14AddNewIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 - (optional)_ZN12NxsTaxaBlock14AppendNewLabelERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 - (optional)_ZN12NxsTaxaBlock14InactivateTaxaERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsTaxaBlock14AppendNewLabelERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsTaxaBlock14InactivateTaxaERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 _ZN12NxsTaxaBlock15AddNewPartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEE@Base 2.1.18 _ZN12NxsTaxaBlock15HandleTaxLabelsER8NxsToken@Base 2.1.18 - (optional)_ZN12NxsTaxaBlock15InactivateTaxonEj@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsTaxaBlock15InactivateTaxonEj@Base 2.1.18 _ZN12NxsTaxaBlock16ChangeTaxonLabelEj9NxsString@Base 2.1.18 _ZN12NxsTaxaBlock16IsAlreadyDefinedERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN12NxsTaxaBlock16RemoveTaxonLabelEj@Base 2.1.18 @@ -84,54 +84,54 @@ _ZN13NxsSimpleEdge21DealWithNexusCommentsERKSt6vectorI10NxsCommentSaIS1_EEb@Base 2.1.18 _ZN13NxsSimpleNode14FindTaxonIndexEj@Base 2.1.18 _ZN13NxsSimpleTree10InitializeERK22NxsFullTreeDescriptionb@Base 2.1.21+git20171002.4becff7 - (optional)_ZN13NxsSimpleTree12AllocNewNodeEP13NxsSimpleNode@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN13NxsSimpleTree12AllocNewNodeEP13NxsSimpleNode@Base 2.1.18 _ZN13NxsSimpleTree12RerootAtNodeEP13NxsSimpleNode@Base 2.1.18 _ZN13NxsSimpleTree20FlipRootsChildToRootEP13NxsSimpleNode@Base 2.1.18 _ZN13NxsSimpleTree8RerootAtEj@Base 2.1.18 - (optional)_ZN13NxsSimpleTreeD1Ev@Base 2.1.18 - (optional)_ZN13NxsSimpleTreeD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN13NxsSimpleTreeD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN13NxsSimpleTreeD2Ev@Base 2.1.18 _ZN13NxsTreesBlock11GetNumTreesEv@Base 2.1.18 _ZN13NxsTreesBlock11GetTreeNameEj@Base 2.1.18 _ZN13NxsTreesBlock12IsRootedTreeEj@Base 2.1.18 _ZN13NxsTreesBlock13IsDefaultTreeEj@Base 2.1.18 _ZN13NxsTreesBlock14AddNewIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 _ZN13NxsTreesBlock15AddNewPartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEE@Base 2.1.18 - (optional)_ZN13NxsTreesBlock16GetImpliedBlocksEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN13NxsTreesBlock16GetImpliedBlocksEv@Base 2.1.18 _ZN13NxsTreesBlock17GetNumDefaultTreeEv@Base 2.1.18 - (optional)_ZN13NxsTreesBlock17HandleLinkCommandER8NxsToken@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN13NxsTreesBlock17HandleLinkCommandER8NxsToken@Base 2.1.18 _ZN13NxsTreesBlock17HandleTreeCommandER8NxsTokenb@Base 2.1.18 _ZN13NxsTreesBlock18GetTreeDescriptionEj@Base 2.1.18 _ZN13NxsTreesBlock18ReadPhylipTreeFileER8NxsToken@Base 2.1.18 _ZN13NxsTreesBlock19ReplaceTaxaBlockPtrEP15NxsTaxaBlockAPI@Base 2.1.18 - (optional)_ZN13NxsTreesBlock22CopyTreesBlockContentsERKS_@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN13NxsTreesBlock22CopyTreesBlockContentsERKS_@Base 2.1.18 _ZN13NxsTreesBlock22HandleTranslateCommandER8NxsToken@Base 2.1.18 _ZN13NxsTreesBlock23ProcessTokenVecIntoTreeERKSt6vectorI17ProcessedNxsTokenSaIS1_EER22NxsFullTreeDescriptionP23NxsLabelToIndicesMapperRSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjSt4lessISG_ESaISt4pairIKSG_jEEEbP9NxsReaderbbbbb@Base 2.1.21+git20171002.4becff7 - (optional)_ZN13NxsTreesBlock23SwapEquivalentTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN13NxsTreesBlock23SwapEquivalentTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18 _ZN13NxsTreesBlock26ProcessTokenStreamIntoTreeER8NxsTokenR22NxsFullTreeDescriptionP23NxsLabelToIndicesMapperRSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjSt4lessISC_ESaISt4pairIKSC_jEEEbP9NxsReaderbbbbbb@Base 2.1.21+git20171002.4becff7 _ZN13NxsTreesBlock27ReadTreeFromOpenParensTokenER22NxsFullTreeDescriptionR8NxsToken@Base 2.1.18 _ZN13NxsTreesBlock28GetTranslatedTreeDescriptionEj@Base 2.1.18 _ZN13NxsTreesBlock30ConstructDefaultTranslateTableER8NxsTokenPKc@Base 2.1.18 _ZN13NxsTreesBlock4ReadER8NxsToken@Base 2.1.18 _ZN13NxsTreesBlock5ResetEv@Base 2.1.18 - (optional)_ZN13NxsTreesBlock8SetNexusEP9NxsReader@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN13NxsTreesBlock8SetNexusEP9NxsReader@Base 2.1.18 _ZN13NxsTreesBlockC1EP15NxsTaxaBlockAPI@Base 2.1.18 _ZN13NxsTreesBlockC2EP15NxsTaxaBlockAPI@Base 2.1.18 _ZN13NxsTreesBlockD0Ev@Base 2.1.18 _ZN13NxsTreesBlockD1Ev@Base 2.1.18 _ZN13NxsTreesBlockD2Ev@Base 2.1.18 - (optional)_ZN15NxsBlockFactory10BlockErrorEP8NxsBlock@Base 2.1.18 - (optional)_ZN15NxsBlockFactory12BlockSkippedEP8NxsBlock@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN15NxsBlockFactory10BlockErrorEP8NxsBlock@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN15NxsBlockFactory12BlockSkippedEP8NxsBlock@Base 2.1.18 _ZN15NxsCodonTripletC1EPKc@Base 2.1.18 _ZN15NxsCodonTripletC2EPKc@Base 2.1.18 - (optional)_ZN16BogusToIndMapper14AddNewIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 - (optional)_ZN16BogusToIndMapper14AppendNewLabelERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 - (optional)_ZN16BogusToIndMapper15AddNewPartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEE@Base 2.1.18 - (optional)_ZN16BogusToIndMapperD0Ev@Base 2.1.18 - (optional)_ZN16BogusToIndMapperD1Ev@Base 2.1.18 - (optional)_ZN16BogusToIndMapperD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN16BogusToIndMapper14AddNewIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN16BogusToIndMapper14AppendNewLabelERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN16BogusToIndMapper15AddNewPartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEE@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN16BogusToIndMapperD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN16BogusToIndMapperD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN16BogusToIndMapperD2Ev@Base 2.1.18 _ZN16FileToCharBuffer12refillBufferEm@Base 2.1.21+git20171002.4becff7 _ZN16FileToCharBuffer25skip_to_beginning_of_lineERc@Base 2.1.18 - (optional)_ZN16FileToCharBuffer7advanceEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN16FileToCharBuffer7advanceEv@Base 2.1.18 _ZN16FileToCharBufferC1ERSi@Base 2.1.18 _ZN16FileToCharBufferC2ERSi@Base 2.1.18 _ZN17MultiFormatReader10ReadStreamERSiNS_14DataFormatTypeEPKc@Base 2.1.18 @@ -159,17 +159,17 @@ _ZN17NxsDistancesBlock10SetMissingEjj@Base 2.1.18 _ZN17NxsDistancesBlock11SetDistanceEjjd@Base 2.1.18 _ZN17NxsDistancesBlock14HandleNextPassER8NxsTokenRjRSt6vectorIjSaIjEERSt3setIjSt4lessIjES4_E@Base 2.1.18 - (optional)_ZN17NxsDistancesBlock16GetImpliedBlocksEv@Base 2.1.18 - (optional)_ZN17NxsDistancesBlock17HandleLinkCommandER8NxsToken@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN17NxsDistancesBlock16GetImpliedBlocksEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN17NxsDistancesBlock17HandleLinkCommandER8NxsToken@Base 2.1.18 _ZN17NxsDistancesBlock19HandleFormatCommandER8NxsToken@Base 2.1.18 _ZN17NxsDistancesBlock19HandleMatrixCommandER8NxsToken@Base 2.1.18 _ZN17NxsDistancesBlock21CopyDistancesContentsERKS_@Base 2.1.18 _ZN17NxsDistancesBlock23HandleDimensionsCommandER8NxsToken@Base 2.1.18 - (optional)_ZN17NxsDistancesBlock23SwapEquivalentTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN17NxsDistancesBlock23SwapEquivalentTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18 _ZN17NxsDistancesBlock4ReadER8NxsToken@Base 2.1.18 _ZN17NxsDistancesBlock5ResetEv@Base 2.1.18 _ZN17NxsDistancesBlock8SetNcharEj@Base 2.1.18 - (optional)_ZN17NxsDistancesBlock8SetNexusEP9NxsReader@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN17NxsDistancesBlock8SetNexusEP9NxsReader@Base 2.1.18 _ZN17NxsDistancesBlockC1EP15NxsTaxaBlockAPI@Base 2.1.18 _ZN17NxsDistancesBlockC2EP15NxsTaxaBlockAPI@Base 2.1.18 _ZN17NxsDistancesBlockD0Ev@Base 2.1.18 @@ -184,17 +184,17 @@ _ZN17NxsUnalignedBlock14HandleEndblockER8NxsToken@Base 2.1.18 _ZN17NxsUnalignedBlock14IsMissingStateEjj@Base 2.1.18 _ZN17NxsUnalignedBlock15HandleNextStateER8NxsTokenjjRSt6vectorIiSaIiEERK9NxsString@Base 2.1.18 - (optional)_ZN17NxsUnalignedBlock16GetImpliedBlocksEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN17NxsUnalignedBlock16GetImpliedBlocksEv@Base 2.1.18 _ZN17NxsUnalignedBlock16HandleDimensionsER8NxsToken@Base 2.1.18 _ZN17NxsUnalignedBlock16NumCharsForTaxonEj@Base 2.1.18 - (optional)_ZN17NxsUnalignedBlock17HandleLinkCommandER8NxsToken@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN17NxsUnalignedBlock17HandleLinkCommandER8NxsToken@Base 2.1.18 _ZN17NxsUnalignedBlock19ResetDatatypeMapperEv@Base 2.1.18 - (optional)_ZN17NxsUnalignedBlock23SwapEquivalentTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN17NxsUnalignedBlock23SwapEquivalentTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18 _ZN17NxsUnalignedBlock25GetInternalRepresentationEjj@Base 2.1.18 - (optional)_ZN17NxsUnalignedBlock26CopyUnalignedBlockContentsERKS_@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN17NxsUnalignedBlock26CopyUnalignedBlockContentsERKS_@Base 2.1.18 _ZN17NxsUnalignedBlock4ReadER8NxsToken@Base 2.1.18 _ZN17NxsUnalignedBlock5ResetEv@Base 2.1.18 - (optional)_ZN17NxsUnalignedBlock8SetNexusEP9NxsReader@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN17NxsUnalignedBlock8SetNexusEP9NxsReader@Base 2.1.18 _ZN17NxsUnalignedBlockC1EP15NxsTaxaBlockAPI@Base 2.1.18 _ZN17NxsUnalignedBlockC2EP15NxsTaxaBlockAPI@Base 2.1.18 _ZN17NxsUnalignedBlockD0Ev@Base 2.1.18 @@ -203,12 +203,12 @@ _ZN17ProcessedNxsToken14ParseSimpleCmdERKSt6vectorIS_SaIS_EEb@Base 2.1.18 _ZN17ProcessedNxsToken16IncrementNotLastERN9__gnu_cxx17__normal_iteratorIPKS_St6vectorIS_SaIS_EEEERKS7_PKc@Base 2.1.18 _ZN17PublicNexusReader10AddFactoryEP15NxsBlockFactory@Base 2.1.18 - (optional)_ZN17PublicNexusReader12ClearContentEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN17PublicNexusReader12ClearContentEv@Base 2.1.18 _ZN17PublicNexusReader12RegisterTaxaERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS6_EE@Base 2.1.18 _ZN17PublicNexusReader15PostExecuteHookEv@Base 2.1.18 _ZN17PublicNexusReader16parseFileOrThrowB5cxx11EPKcN9NxsReader19WarningHandlingModeEbb@Base 2.1.18 _ZN17PublicNexusReader18ClearUsedBlockListEv@Base 2.1.18 - (optional)_ZN17PublicNexusReader25DeleteBlocksFromFactoriesEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN17PublicNexusReader25DeleteBlocksFromFactoriesEv@Base 2.1.18 _ZN17PublicNexusReader7ExecuteER8NxsTokenb@Base 2.1.18 _ZN17PublicNexusReaderC1EiN9NxsReader19WarningHandlingModeE@Base 2.1.18 _ZN17PublicNexusReaderC2EiN9NxsReader19WarningHandlingModeE@Base 2.1.18 @@ -226,7 +226,7 @@ _ZN18NxsCharactersBlock15HandleEliminateER8NxsToken@Base 2.1.18 _ZN18NxsCharactersBlock15HandleStdMatrixER8NxsToken@Base 2.1.18 _ZN18NxsCharactersBlock16ExcludeCharacterEj@Base 2.1.18 - (optional)_ZN18NxsCharactersBlock16GetImpliedBlocksEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsCharactersBlock16GetImpliedBlocksEv@Base 2.1.18 _ZN18NxsCharactersBlock16HandleCharlabelsER8NxsToken@Base 2.1.18 _ZN18NxsCharactersBlock16HandleDimensionsER8NxsToken9NxsStringS2_S2_@Base 2.1.18 _ZN18NxsCharactersBlock16HandleTokenStateER8NxsTokenjjR25NxsDiscreteDatatypeMapperPKSt6vectorIiSaIiEERK9NxsString@Base 2.1.18 @@ -234,9 +234,9 @@ _ZN18NxsCharactersBlock16RemoveStopCodonsE19NxsGeneticCodesEnum@Base 2.1.18 _ZN18NxsCharactersBlock17GetDefaultEquatesENS_13DataTypesEnumE@Base 2.1.18 _ZN18NxsCharactersBlock17GetNameOfDatatypeENS_13DataTypesEnumE@Base 2.1.18 - (optional)_ZN18NxsCharactersBlock17HandleLinkCommandER8NxsToken@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsCharactersBlock17HandleLinkCommandER8NxsToken@Base 2.1.18 _ZN18NxsCharactersBlock17HandleStatelabelsER8NxsToken@Base 2.1.18 - (optional)_ZN18NxsCharactersBlock17SetGapModeSettingEN21NxsCharactersBlockAPI11GapModeEnumE@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsCharactersBlock17SetGapModeSettingEN21NxsCharactersBlockAPI11GapModeEnumE@Base 2.1.18 _ZN18NxsCharactersBlock20HandleNextTokenStateER8NxsTokenjjRSt6vectorIiSaIiEER25NxsDiscreteDatatypeMapperPKS4_RK9NxsString@Base 2.1.18 _ZN18NxsCharactersBlock21HandleCharstatelabelsER8NxsToken@Base 2.1.18 _ZN18NxsCharactersBlock22CopyCharactersContentsERKS_@Base 2.1.18 @@ -244,7 +244,7 @@ _ZN18NxsCharactersBlock23AddNewCodonPosPartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEEb@Base 2.1.18 _ZN18NxsCharactersBlock23AugmentedSymbolsToMixedEv@Base 2.1.18 _ZN18NxsCharactersBlock23HandleNextDiscreteStateER8NxsTokenjjRSt6vectorIiSaIiEER25NxsDiscreteDatatypeMapperPKS4_RK9NxsString@Base 2.1.18 - (optional)_ZN18NxsCharactersBlock23SwapEquivalentTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsCharactersBlock23SwapEquivalentTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18 _ZN18NxsCharactersBlock24GetDefaultSymbolsForTypeB5cxx11ENS_13DataTypesEnumE@Base 2.1.18 _ZN18NxsCharactersBlock24NewCodonsCharactersBlockEPKS_bbbPKNSt7__cxx114listIiSaIiEEEPPS_@Base 2.1.18 _ZN18NxsCharactersBlock25HandleNextContinuousStateER8NxsTokenjjRSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES2_IdSaIdEESt4lessIS9_ESaISt4pairIKS9_SB_EEESaISI_EERK9NxsString@Base 2.1.18 @@ -252,27 +252,27 @@ _ZN18NxsCharactersBlock25NewProteinCharactersBlockEPKS_bbRKSt6vectorIiSaIiEE@Base 2.1.18 _ZN18NxsCharactersBlock26CodonPosPartitionToPosListERKNSt7__cxx114listISt4pairINS0_12basic_stringIcSt11char_traitsIcESaIcEEESt3setIjSt4lessIjESaIjEEESaISD_EEEPNS1_IiSaIiEEE@Base 2.1.18 _ZN18NxsCharactersBlock27CreateDatatypeMapperObjectsERKNSt7__cxx114listISt4pairINS0_12basic_stringIcSt11char_traitsIcESaIcEEESt3setIjSt4lessIjESaIjEEESaISD_EEERKSt6vectorINS_13DataTypesEnumESaISJ_EE@Base 2.1.18 - (optional)_ZN18NxsCharactersBlock30GetNxsTransformationManagerRefEv@Base 2.1.18 - (optional)_ZN18NxsCharactersBlock31GetMutableDatatypeMapperForCharEj@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsCharactersBlock30GetNxsTransformationManagerRefEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsCharactersBlock31GetMutableDatatypeMapperForCharEj@Base 2.1.18 _ZN18NxsCharactersBlock4ReadER8NxsToken@Base 2.1.18 _ZN18NxsCharactersBlock5ResetEv@Base 2.1.18 _ZN18NxsCharactersBlock7ConsumeERS_@Base 2.1.18 - (optional)_ZN18NxsCharactersBlock8SetNexusEP9NxsReader@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsCharactersBlock8SetNexusEP9NxsReader@Base 2.1.18 _ZN18NxsCharactersBlockC1EP15NxsTaxaBlockAPIP22NxsAssumptionsBlockAPI@Base 2.1.18 _ZN18NxsCharactersBlockC2EP15NxsTaxaBlockAPIP22NxsAssumptionsBlockAPI@Base 2.1.18 - (optional)_ZN18NxsCharactersBlockD0Ev@Base 2.1.18 - (optional)_ZN18NxsCharactersBlockD1Ev@Base 2.1.18 - (optional)_ZN18NxsCharactersBlockD2Ev@Base 2.1.18 - (optional)_ZN18NxsNCLAPIExceptionD0Ev@Base 2.1.18 - (optional)_ZN18NxsNCLAPIExceptionD1Ev@Base 2.1.18 - (optional)_ZN18NxsNCLAPIExceptionD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsCharactersBlockD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsCharactersBlockD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsCharactersBlockD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsNCLAPIExceptionD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsNCLAPIExceptionD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsNCLAPIExceptionD2Ev@Base 2.1.18 _ZN18NxsX_UnexpectedEOFC1ER8NxsToken@Base 2.1.18 _ZN18NxsX_UnexpectedEOFC2ER8NxsToken@Base 2.1.18 - (optional)_ZN18NxsX_UnexpectedEOFD0Ev@Base 2.1.18 - (optional)_ZN18NxsX_UnexpectedEOFD1Ev@Base 2.1.18 - (optional)_ZN18NxsX_UnexpectedEOFD2Ev@Base 2.1.18 - (optional)_ZN19CodonRecodingStructD1Ev@Base 2.1.18 - (optional)_ZN19CodonRecodingStructD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsX_UnexpectedEOFD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsX_UnexpectedEOFD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsX_UnexpectedEOFD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19CodonRecodingStructD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19CodonRecodingStructD2Ev@Base 2.1.18 _ZN19NxsAssumptionsBlock10AddCodeSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEEb@Base 2.1.18 _ZN19NxsAssumptionsBlock10ApplyExsetE9NxsString@Base 2.1.18 _ZN19NxsAssumptionsBlock11HandleExSetER8NxsToken@Base 2.1.18 @@ -303,29 +303,29 @@ _ZN19NxsAssumptionsBlock16AddCharPartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEE@Base 2.1.18 _ZN19NxsAssumptionsBlock16AddTreePartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEE@Base 2.1.18 _ZN19NxsAssumptionsBlock16CanReadBlockTypeERK8NxsToken@Base 2.1.18 - (optional)_ZN19NxsAssumptionsBlock16GetImpliedBlocksEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsAssumptionsBlock16GetImpliedBlocksEv@Base 2.1.18 _ZN19NxsAssumptionsBlock16GetTreesBlockPtrEPi@Base 2.1.18 _ZN19NxsAssumptionsBlock16SetTreesBlockPtrEP16NxsTreesBlockAPIN8NxsBlock18NxsBlockLinkStatusE@Base 2.1.18 _ZN19NxsAssumptionsBlock17HandleCodonPosSetER8NxsToken@Base 2.1.18 _ZN19NxsAssumptionsBlock17HandleLinkCommandER8NxsToken@Base 2.1.18 _ZN19NxsAssumptionsBlock17SetCharLinkStatusEN8NxsBlock18NxsBlockLinkStatusE@Base 2.1.18 - (optional)_ZN19NxsAssumptionsBlock17SetGapsAsNewstateEb@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsAssumptionsBlock17SetGapsAsNewstateEb@Base 2.1.18 _ZN19NxsAssumptionsBlock17SetTaxaLinkStatusEN8NxsBlock18NxsBlockLinkStatusE@Base 2.1.18 _ZN19NxsAssumptionsBlock18HandleTaxPartitionER8NxsToken@Base 2.1.18 _ZN19NxsAssumptionsBlock18SetTreesLinkStatusEN8NxsBlock18NxsBlockLinkStatusE@Base 2.1.18 - (optional)_ZN19NxsAssumptionsBlock19FlagCharBlockAsUsedEv@Base 2.1.18 - (optional)_ZN19NxsAssumptionsBlock19FlagTaxaBlockAsUsedEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsAssumptionsBlock19FlagCharBlockAsUsedEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsAssumptionsBlock19FlagTaxaBlockAsUsedEv@Base 2.1.18 _ZN19NxsAssumptionsBlock19HandleCharPartitionER8NxsToken@Base 2.1.18 _ZN19NxsAssumptionsBlock19HandleTreePartitionER8NxsToken@Base 2.1.18 _ZN19NxsAssumptionsBlock19ReplaceTaxaBlockPtrEP15NxsTaxaBlockAPI@Base 2.1.18 - (optional)_ZN19NxsAssumptionsBlock20FlagTreesBlockAsUsedEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsAssumptionsBlock20FlagTreesBlockAsUsedEv@Base 2.1.18 _ZN19NxsAssumptionsBlock20GetCreatedTaxaBlocksEv@Base 2.1.18 _ZN19NxsAssumptionsBlock20GetNumCharPartitionsEv@Base 2.1.18 _ZN19NxsAssumptionsBlock21GetCharPartitionNamesERSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS6_EE@Base 2.1.18 - (optional)_ZN19NxsAssumptionsBlock23CopyAssumptionsContentsERKS_@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsAssumptionsBlock23CopyAssumptionsContentsERKS_@Base 2.1.18 _ZN19NxsAssumptionsBlock25CreateNewAssumptionsBlockER8NxsToken@Base 2.1.18 - (optional)_ZN19NxsAssumptionsBlock28GetNxsGeneticCodesManagerRefEv@Base 2.1.18 - (optional)_ZN19NxsAssumptionsBlock30GetNxsTransformationManagerRefEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsAssumptionsBlock28GetNxsGeneticCodesManagerRefEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsAssumptionsBlock30GetNxsTransformationManagerRefEv@Base 2.1.18 _ZN19NxsAssumptionsBlock31GetAssumptionsBlockForCharBlockEP21NxsCharactersBlockAPIN8NxsBlock18NxsBlockLinkStatusER8NxsToken@Base 2.1.18 _ZN19NxsAssumptionsBlock31GetAssumptionsBlockForCharTitleEPKcR8NxsTokenS1_@Base 2.1.18 _ZN19NxsAssumptionsBlock31GetAssumptionsBlockForTaxaBlockEP15NxsTaxaBlockAPIN8NxsBlock18NxsBlockLinkStatusER8NxsToken@Base 2.1.18 @@ -343,63 +343,63 @@ _ZN19NxsAssumptionsBlockD1Ev@Base 2.1.18 _ZN19NxsAssumptionsBlockD2Ev@Base 2.1.18 _ZN19NxsDataBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 - (optional)_ZN19NxsDataBlockFactoryD0Ev@Base 2.1.18 - (optional)_ZN19NxsDataBlockFactoryD1Ev@Base 2.1.18 - (optional)_ZN19NxsDataBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsDataBlockFactoryD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsDataBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsDataBlockFactoryD2Ev@Base 2.1.18 _ZN19NxsTaxaBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 - (optional)_ZN19NxsTaxaBlockFactoryD0Ev@Base 2.1.18 - (optional)_ZN19NxsTaxaBlockFactoryD1Ev@Base 2.1.18 - (optional)_ZN19NxsTaxaBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsTaxaBlockFactoryD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsTaxaBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsTaxaBlockFactoryD2Ev@Base 2.1.18 _ZN20NxsCXXDiscreteMatrix10InitializeEPK18NxsCharactersBlockbPKSt3setIjSt4lessIjESaIjEEb@Base 2.1.18 _ZN20NxsCXXDiscreteMatrixC1ERK18NxsCharactersBlockbPKSt3setIjSt4lessIjESaIjEEb@Base 2.1.18 _ZN20NxsCXXDiscreteMatrixC1ERK24NxsCDiscreteMatrixStruct@Base 2.1.18 _ZN20NxsCXXDiscreteMatrixC2ERK18NxsCharactersBlockbPKSt3setIjSt4lessIjESaIjEEb@Base 2.1.18 _ZN20NxsCXXDiscreteMatrixC2ERK24NxsCDiscreteMatrixStruct@Base 2.1.18 - (optional)_ZN20NxsCloneBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 - (optional)_ZN20NxsCloneBlockFactoryD0Ev@Base 2.1.18 - (optional)_ZN20NxsCloneBlockFactoryD1Ev@Base 2.1.18 - (optional)_ZN20NxsCloneBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN20NxsCloneBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN20NxsCloneBlockFactoryD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN20NxsCloneBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN20NxsCloneBlockFactoryD2Ev@Base 2.1.18 _ZN20NxsTreesBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 - (optional)_ZN20NxsTreesBlockFactoryD0Ev@Base 2.1.18 - (optional)_ZN20NxsTreesBlockFactoryD1Ev@Base 2.1.18 - (optional)_ZN20NxsTreesBlockFactoryD2Ev@Base 2.1.18 - (optional)_ZN21NxsTaxaBlockSurrogate12ActivateTaxaERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 - (optional)_ZN21NxsTaxaBlockSurrogate13ActivateTaxonEj@Base 2.1.18 - (optional)_ZN21NxsTaxaBlockSurrogate14InactivateTaxaERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN20NxsTreesBlockFactoryD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN20NxsTreesBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN20NxsTreesBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN21NxsTaxaBlockSurrogate12ActivateTaxaERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN21NxsTaxaBlockSurrogate13ActivateTaxonEj@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN21NxsTaxaBlockSurrogate14InactivateTaxaERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 _ZN21NxsTaxaBlockSurrogate14ResetSurrogateEv@Base 2.1.18 _ZN21NxsTaxaBlockSurrogate15AssureTaxaBlockEbR8NxsTokenPKc@Base 2.1.18 _ZN21NxsTaxaBlockSurrogate15HandleTaxLabelsER8NxsToken@Base 2.1.18 - (optional)_ZN21NxsTaxaBlockSurrogate15InactivateTaxonEj@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN21NxsTaxaBlockSurrogate15InactivateTaxonEj@Base 2.1.18 _ZN21NxsTaxaBlockSurrogate15SetTaxaBlockPtrEP15NxsTaxaBlockAPIN8NxsBlock18NxsBlockLinkStatusE@Base 2.1.18 _ZN21NxsTaxaBlockSurrogate17SetTaxaLinkStatusEN8NxsBlock18NxsBlockLinkStatusE@Base 2.1.18 _ZN21NxsTaxaBlockSurrogate20GetCreatedTaxaBlocksEv@Base 2.1.18 _ZN21NxsTaxaBlockSurrogate21HandleLinkTaxaCommandER8NxsToken@Base 2.1.18 - (optional)_ZN21NxsTaxaBlockSurrogate30CopyTaxaBlockSurrogateContentsERKS_@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN21NxsTaxaBlockSurrogate30CopyTaxaBlockSurrogateContentsERKS_@Base 2.1.18 _ZN21NxsTaxaBlockSurrogate32SurrogateSwapEquivalentTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18 _ZN22NxsGeneticCodesManagerC1Ev@Base 2.1.18 _ZN22NxsGeneticCodesManagerC2Ev@Base 2.1.18 - (optional)_ZN23NxsLabelToIndicesMapper14AppendNewLabelERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN23NxsLabelToIndicesMapper14AppendNewLabelERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN23NxsLabelToIndicesMapper18GetIndicesFromSetsERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEERKSt3mapI9NxsStringSC_S9_ISF_ESaISt4pairIKSF_SC_EEE@Base 2.1.18 _ZN23NxsLabelToIndicesMapper25allowNumberAsIndexPlusOneE@Base 2.1.18 _ZN23NxsLabelToIndicesMapper27GetIndicesFromSetOrAsNumberERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEERKSt3mapI9NxsStringSC_S9_ISF_ESaISt4pairIKSF_SC_EEEjPKc@Base 2.1.18 - (optional)_ZN23NxsSimpleCommandStringsD1Ev@Base 2.1.18 - (optional)_ZN23NxsSimpleCommandStringsD2Ev@Base 2.1.18 - (optional)_ZN23NxsTaxaAssociationBlock14AddAssociationEjRKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN23NxsSimpleCommandStringsD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN23NxsSimpleCommandStringsD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN23NxsTaxaAssociationBlock14AddAssociationEjRKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 _ZN23NxsTaxaAssociationBlock17HandleTaxaCommandER8NxsToken@Base 2.1.18 - (optional)_ZN23NxsTaxaAssociationBlock17SetFirstTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18 - (optional)_ZN23NxsTaxaAssociationBlock18SetSecondTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN23NxsTaxaAssociationBlock17SetFirstTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN23NxsTaxaAssociationBlock18SetSecondTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18 _ZN23NxsTaxaAssociationBlock23HandleAssociatesCommandER8NxsToken@Base 2.1.18 _ZN23NxsTaxaAssociationBlock4ReadER8NxsToken@Base 2.1.18 _ZN23NxsTaxaAssociationBlock5ResetEv@Base 2.1.18 _ZN23NxsTaxaAssociationBlockC1Ev@Base 2.1.18 _ZN23NxsTaxaAssociationBlockC2Ev@Base 2.1.18 - (optional)_ZN23NxsTaxaAssociationBlockD0Ev@Base 2.1.18 - (optional)_ZN23NxsTaxaAssociationBlockD1Ev@Base 2.1.18 - (optional)_ZN23NxsTaxaAssociationBlockD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN23NxsTaxaAssociationBlockD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN23NxsTaxaAssociationBlockD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN23NxsTaxaAssociationBlockD2Ev@Base 2.1.18 _ZN24NxsDistancesBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 - (optional)_ZN24NxsDistancesBlockFactoryD0Ev@Base 2.1.18 - (optional)_ZN24NxsDistancesBlockFactoryD1Ev@Base 2.1.18 - (optional)_ZN24NxsDistancesBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN24NxsDistancesBlockFactoryD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN24NxsDistancesBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN24NxsDistancesBlockFactoryD2Ev@Base 2.1.18 _ZN24NxsTransformationManager10AddIntTypeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK16NxsIntStepMatrix@Base 2.1.18 _ZN24NxsTransformationManager10AddTypeSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEEb@Base 2.1.18 _ZN24NxsTransformationManager11AddRealTypeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK17NxsRealStepMatrix@Base 2.1.18 @@ -411,28 +411,28 @@ _ZN24NxsTransformationManager17GetWeightForIndexERKNSt7__cxx114listISt4pairIiSt3setIjSt4lessIjESaIjEEESaIS8_EEEj@Base 2.1.18 _ZN24NxsTransformationManager18SetDefaultTypeNameERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN24NxsTransformationManager5ResetEv@Base 2.1.18 - (optional)_ZN24NxsTransformationManagerD1Ev@Base 2.1.18 - (optional)_ZN24NxsTransformationManagerD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN24NxsTransformationManagerD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN24NxsTransformationManagerD2Ev@Base 2.1.18 _ZN24NxsUnalignedBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 - (optional)_ZN24NxsUnalignedBlockFactoryD0Ev@Base 2.1.18 - (optional)_ZN24NxsUnalignedBlockFactoryD1Ev@Base 2.1.18 - (optional)_ZN24NxsUnalignedBlockFactoryD2Ev@Base 2.1.18 - (optional)_ZN24WtSetVectorItemValidator7convertB5cxx11ER8NxsToken@Base 2.1.18 - (optional)_ZN24WtSetVectorItemValidatorD0Ev@Base 2.1.18 - (optional)_ZN24WtSetVectorItemValidatorD1Ev@Base 2.1.18 - (optional)_ZN24WtSetVectorItemValidatorD2Ev@Base 2.1.18 - (optional)_ZN25ExceptionRaisingNxsReader10NexusErrorE9NxsStringSt4fposI11__mbstate_tEll@Base 2.1.18 - (optional)_ZN25ExceptionRaisingNxsReader12ClearContentEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN24NxsUnalignedBlockFactoryD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN24NxsUnalignedBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN24NxsUnalignedBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN24WtSetVectorItemValidator7convertB5cxx11ER8NxsToken@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN24WtSetVectorItemValidatorD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN24WtSetVectorItemValidatorD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN24WtSetVectorItemValidatorD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25ExceptionRaisingNxsReader10NexusErrorE9NxsStringSt4fposI11__mbstate_tEll@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25ExceptionRaisingNxsReader12ClearContentEv@Base 2.1.18 _ZN25ExceptionRaisingNxsReader13SkippingBlockE9NxsString@Base 2.1.18 _ZN25ExceptionRaisingNxsReader21SkippingDisabledBlockE9NxsString@Base 2.1.18 _ZN25ExceptionRaisingNxsReader9NexusWarnERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN9NxsReader12NxsWarnLevelESt4fposI11__mbstate_tEll@Base 2.1.18 - (optional)_ZN25ExceptionRaisingNxsReaderD0Ev@Base 2.1.18 - (optional)_ZN25ExceptionRaisingNxsReaderD1Ev@Base 2.1.18 - (optional)_ZN25ExceptionRaisingNxsReaderD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25ExceptionRaisingNxsReaderD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25ExceptionRaisingNxsReaderD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25ExceptionRaisingNxsReaderD2Ev@Base 2.1.18 _ZN25NxsCharactersBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 - (optional)_ZN25NxsCharactersBlockFactoryD0Ev@Base 2.1.18 - (optional)_ZN25NxsCharactersBlockFactoryD1Ev@Base 2.1.18 - (optional)_ZN25NxsCharactersBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsCharactersBlockFactoryD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsCharactersBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsCharactersBlockFactoryD2Ev@Base 2.1.18 _ZN25NxsConversionOutputRecord20writeNameTranslationESt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES7_ESaIS8_EEPK15NxsTaxaBlockAPI@Base 2.1.18 _ZN25NxsConversionOutputRecord31writeTaxonNameTranslationStreamERSoRKSt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ESaIS9_EEPK15NxsTaxaBlockAPI@Base 2.1.18 _ZN25NxsConversionOutputRecord32getUniqueFilenameWithLowestIndexB5cxx11EPKc@Base 2.1.18 @@ -446,60 +446,60 @@ _ZN25NxsDiscreteDatatypeMapper38StateCodeForNexusPossibleMultiStateSetEcRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEER8NxsTokenjjPKSt6vectorIiSaIiEERK9NxsString@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperC1EN18NxsCharactersBlock13DataTypesEnumERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcccbRKSt3mapIc9NxsStringSt4lessIcESaISt4pairIKcSB_EEE@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperC1EN18NxsCharactersBlock13DataTypesEnumEb@Base 2.1.18 - (optional)_ZN25NxsDiscreteDatatypeMapperC1ERKS_@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsDiscreteDatatypeMapperC1ERKS_@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperC1Ev@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperC2EN18NxsCharactersBlock13DataTypesEnumERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcccbRKSt3mapIc9NxsStringSt4lessIcESaISt4pairIKcSB_EEE@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperC2EN18NxsCharactersBlock13DataTypesEnumEb@Base 2.1.18 - (optional)_ZN25NxsDiscreteDatatypeMapperC2ERKS_@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsDiscreteDatatypeMapperC2ERKS_@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperC2Ev@Base 2.1.18 - (optional)_ZN25NxsDiscreteDatatypeMapperD1Ev@Base 2.1.18 - (optional)_ZN25NxsDiscreteDatatypeMapperD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsDiscreteDatatypeMapperD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsDiscreteDatatypeMapperD2Ev@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperaSERKS_@Base 2.1.18 _ZN25NxsStoreTokensBlockReader11ReadCommandER8NxsToken@Base 2.1.18 - (optional)_ZN25NxsStoreTokensBlockReader16CanReadBlockTypeERK8NxsToken@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsStoreTokensBlockReader16CanReadBlockTypeERK8NxsToken@Base 2.1.18 _ZN25NxsStoreTokensBlockReader4ReadER8NxsToken@Base 2.1.18 _ZN25NxsStoreTokensBlockReader5ResetEv@Base 2.1.18 - (optional)_ZN25NxsStoreTokensBlockReaderD0Ev@Base 2.1.18 - (optional)_ZN25NxsStoreTokensBlockReaderD1Ev@Base 2.1.18 - (optional)_ZN25NxsStoreTokensBlockReaderD2Ev@Base 2.1.18 - (optional)_ZN25NxsUnimplementedExceptionC1E9NxsString@Base 2.1.18 - (optional)_ZN25NxsUnimplementedExceptionC2E9NxsString@Base 2.1.18 - (optional)_ZN25NxsUnimplementedExceptionD0Ev@Base 2.1.18 - (optional)_ZN25NxsUnimplementedExceptionD1Ev@Base 2.1.18 - (optional)_ZN25NxsUnimplementedExceptionD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsStoreTokensBlockReaderD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsStoreTokensBlockReaderD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsStoreTokensBlockReaderD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsUnimplementedExceptionC1E9NxsString@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsUnimplementedExceptionC2E9NxsString@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsUnimplementedExceptionD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsUnimplementedExceptionD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsUnimplementedExceptionD2Ev@Base 2.1.18 _ZN26NxsAssumptionsBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 - (optional)_ZN26NxsAssumptionsBlockFactoryD0Ev@Base 2.1.18 - (optional)_ZN26NxsAssumptionsBlockFactoryD1Ev@Base 2.1.18 - (optional)_ZN26NxsAssumptionsBlockFactoryD2Ev@Base 2.1.18 - (optional)_ZN27DefaultErrorReportNxsReader10NexusErrorE9NxsStringSt4fposI11__mbstate_tEll@Base 2.1.18 - (optional)_ZN27DefaultErrorReportNxsReader13EnteringBlockE9NxsString@Base 2.1.18 - (optional)_ZN27DefaultErrorReportNxsReader13SkippingBlockE9NxsString@Base 2.1.18 - (optional)_ZN27DefaultErrorReportNxsReader21SkippingDisabledBlockE9NxsString@Base 2.1.18 - (optional)_ZN27DefaultErrorReportNxsReader9NexusWarnERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN9NxsReader12NxsWarnLevelESt4fposI11__mbstate_tEll@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN26NxsAssumptionsBlockFactoryD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN26NxsAssumptionsBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN26NxsAssumptionsBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN27DefaultErrorReportNxsReader10NexusErrorE9NxsStringSt4fposI11__mbstate_tEll@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN27DefaultErrorReportNxsReader13EnteringBlockE9NxsString@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN27DefaultErrorReportNxsReader13SkippingBlockE9NxsString@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN27DefaultErrorReportNxsReader21SkippingDisabledBlockE9NxsString@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN27DefaultErrorReportNxsReader9NexusWarnERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN9NxsReader12NxsWarnLevelESt4fposI11__mbstate_tEll@Base 2.1.18 _ZN27DefaultErrorReportNxsReader9parseFileB5cxx11EPKcPSoS2_bb@Base 2.1.18 - (optional)_ZN27DefaultErrorReportNxsReaderD0Ev@Base 2.1.18 - (optional)_ZN27DefaultErrorReportNxsReaderD1Ev@Base 2.1.18 - (optional)_ZN27DefaultErrorReportNxsReaderD2Ev@Base 2.1.18 - (optional)_ZN27DuplicatedLabelNxsExceptionD0Ev@Base 2.1.18 - (optional)_ZN27DuplicatedLabelNxsExceptionD1Ev@Base 2.1.18 - (optional)_ZN27DuplicatedLabelNxsExceptionD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN27DefaultErrorReportNxsReaderD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN27DefaultErrorReportNxsReaderD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN27DefaultErrorReportNxsReaderD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN27DuplicatedLabelNxsExceptionD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN27DuplicatedLabelNxsExceptionD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN27DuplicatedLabelNxsExceptionD2Ev@Base 2.1.18 _ZN28NxsDefaultPublicBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 - (optional)_ZN28NxsDefaultPublicBlockFactoryD0Ev@Base 2.1.18 - (optional)_ZN28NxsDefaultPublicBlockFactoryD1Ev@Base 2.1.18 - (optional)_ZN28NxsDefaultPublicBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN28NxsDefaultPublicBlockFactoryD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN28NxsDefaultPublicBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN28NxsDefaultPublicBlockFactoryD2Ev@Base 2.1.18 _ZN30NxsTaxaAssociationBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 - (optional)_ZN30NxsTaxaAssociationBlockFactoryD0Ev@Base 2.1.18 - (optional)_ZN30NxsTaxaAssociationBlockFactoryD1Ev@Base 2.1.18 - (optional)_ZN30NxsTaxaAssociationBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN30NxsTaxaAssociationBlockFactoryD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN30NxsTaxaAssociationBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN30NxsTaxaAssociationBlockFactoryD2Ev@Base 2.1.18 _ZN31NxsSignalCanceledParseExceptionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN31NxsSignalCanceledParseExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 - (optional)_ZN31NxsSignalCanceledParseExceptionD0Ev@Base 2.1.18 - (optional)_ZN31NxsSignalCanceledParseExceptionD1Ev@Base 2.1.18 - (optional)_ZN31NxsSignalCanceledParseExceptionD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN31NxsSignalCanceledParseExceptionD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN31NxsSignalCanceledParseExceptionD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN31NxsSignalCanceledParseExceptionD2Ev@Base 2.1.18 _ZN8NxsBlock11SkipCommandER8NxsToken@Base 2.1.18 _ZN8NxsBlock14HandleEndblockER8NxsToken@Base 2.1.18 _ZN8NxsBlock15SkippingCommandE9NxsString@Base 2.1.18 - (optional)_ZN8NxsBlock16CanReadBlockTypeERK8NxsToken@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN8NxsBlock16CanReadBlockTypeERK8NxsToken@Base 2.1.18 _ZN8NxsBlock16GetImpliedBlocksEv@Base 2.1.18 _ZN8NxsBlock16ReadPartitionDefERNSt7__cxx114listISt4pairINS0_12basic_stringIcSt11char_traitsIcESaIcEEESt3setIjSt4lessIjESaIjEEESaISD_EEER23NxsLabelToIndicesMapperRKS7_PKcSM_R8NxsTokenbbb@Base 2.1.18 _ZN8NxsBlock17HandleLinkCommandER8NxsToken@Base 2.1.18 @@ -508,15 +508,15 @@ _ZN8NxsBlock20SetImplementsLinkAPIEb@Base 2.1.18 _ZN8NxsBlock20WarnDangerousContentERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK17ProcessedNxsToken@Base 2.1.18 _ZN8NxsBlock20WarnDangerousContentERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK8NxsToken@Base 2.1.18 - (optional)_ZN8NxsBlock21CopyBaseBlockContentsERKS_@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN8NxsBlock21CopyBaseBlockContentsERKS_@Base 2.1.18 _ZN8NxsBlock22ReadVectorPartitionDefERNSt7__cxx114listISt4pairINS0_12basic_stringIcSt11char_traitsIcESaIcEEESt3setIjSt4lessIjESaIjEEESaISD_EEER23NxsLabelToIndicesMapperRKS7_PKcSM_R8NxsTokenbbR25NxsSetVectorItemValidator@Base 2.1.18 - (optional)_ZN8NxsBlock23SwapEquivalentTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN8NxsBlock23SwapEquivalentTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18 _ZN8NxsBlock24HandleBasicBlockCommandsER8NxsToken@Base 2.1.18 _ZN8NxsBlock4ReadER8NxsToken@Base 2.1.18 _ZN8NxsBlock5ResetEv@Base 2.1.18 _ZN8NxsBlock6EnableEv@Base 2.1.18 _ZN8NxsBlock7DisableEv@Base 2.1.18 - (optional)_ZN8NxsBlock8SetNexusEP9NxsReader@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN8NxsBlock8SetNexusEP9NxsReader@Base 2.1.18 _ZN8NxsBlockC1Ev@Base 2.1.18 _ZN8NxsBlockC2Ev@Base 2.1.18 _ZN8NxsBlockD0Ev@Base 2.1.18 @@ -526,8 +526,8 @@ _ZN8NxsToken11NeedsQuotesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN8NxsToken12AbbreviationE9NxsString@Base 2.1.18 _ZN8NxsToken12GetNextTokenEv@Base 2.1.18 - (optional)_ZN8NxsToken13IsPunctuationEc@Base 2.1.21+git20210811.b1213a7 - (optional)_ZN8NxsToken13OutputCommentERK9NxsString@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN8NxsToken13IsPunctuationEc@Base 2.1.21+git20210811.b1213a7 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN8NxsToken13OutputCommentERK9NxsString@Base 2.1.18 _ZN8NxsToken15StripWhitespaceEv@Base 2.1.18 _ZN8NxsToken16ProcessAsCommandEPSt6vectorI17ProcessedNxsTokenSaIS1_EE@Base 2.1.18 _ZN8NxsToken17DemandPositiveIntERS_R9NxsStringPKc@Base 2.1.18 @@ -550,7 +550,7 @@ _ZN8NxsTokenD2Ev@Base 2.1.18 _ZN9NxsReader10AddFactoryEP15NxsBlockFactory@Base 2.1.18 _ZN9NxsReader10NexusErrorE9NxsStringSt4fposI11__mbstate_tEll@Base 2.1.18 - (optional)_ZN9NxsReader12AddReadBlockERK9NxsStringP8NxsBlock@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN9NxsReader12AddReadBlockERK9NxsStringP8NxsBlock@Base 2.1.18 _ZN9NxsReader12ClearContentEv@Base 2.1.18 _ZN9NxsReader12DemoteBlocksEi@Base 2.1.18 _ZN9NxsReader12ExecuteBlockER8NxsTokenRK9NxsStringP8NxsBlockP15NxsBlockFactory@Base 2.1.18 @@ -563,7 +563,7 @@ _ZN9NxsReader13SkippingBlockE9NxsString@Base 2.1.18 _ZN9NxsReader14BlockListEmptyEv@Base 2.1.18 _ZN9NxsReader14NCLHomePageURLEv@Base 2.1.18 - (optional)_ZN9NxsReader14NexusWarnTokenERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEENS_12NxsWarnLevelERK8NxsToken@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN9NxsReader14NexusWarnTokenERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEENS_12NxsWarnLevelERK8NxsToken@Base 2.1.18 _ZN9NxsReader14ReadFilestreamERSi@Base 2.1.18 _ZN9NxsReader15ExecuteStartingEv@Base 2.1.18 _ZN9NxsReader15ExecuteStoppingEv@Base 2.1.18 @@ -613,13 +613,13 @@ _ZN9NxsReader6DetachEP8NxsBlock@Base 2.1.18 _ZN9NxsReader7ExecuteER8NxsTokenb@Base 2.1.18 _ZN9NxsReader8ReassignEP8NxsBlockS1_@Base 2.1.18 - (optional)_ZN9NxsReader9NexusWarnERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEENS_12NxsWarnLevelESt4fposI11__mbstate_tEll@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN9NxsReader9NexusWarnERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEENS_12NxsWarnLevelESt4fposI11__mbstate_tEll@Base 2.1.18 _ZN9NxsReaderC1Ev@Base 2.1.18 _ZN9NxsReaderC2Ev@Base 2.1.18 _ZN9NxsReaderD0Ev@Base 2.1.18 _ZN9NxsReaderD1Ev@Base 2.1.18 _ZN9NxsReaderD2Ev@Base 2.1.18 - (optional)_ZN9NxsString10GetEscapedERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN9NxsString10GetEscapedERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN9NxsString14add_nxs_quotesERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN9NxsString14index_in_arrayERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPPKcj@Base 2.1.18 _ZN9NxsString15RightJustifyDblEdjjb@Base 2.1.18 @@ -646,34 +646,34 @@ _ZN9NxsString8to_upperERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN9NxsString9ShortenToEj@Base 2.1.18 _ZN9NxsString9to_doubleEPKcPd@Base 2.1.18 - (optional)_ZN9NxsStringC1EPKc@Base 2.1.18 - (optional)_ZN9NxsStringC1ERKS_@Base 2.1.18 - (optional)_ZN9NxsStringC2EPKc@Base 2.1.18 - (optional)_ZN9NxsStringC2ERKS_@Base 2.1.18 - (optional)_ZN9NxsStringpLEPKc@Base 2.1.18 - (optional)_ZN9NxsStringpLEc@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN9NxsStringC1EPKc@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN9NxsStringC1ERKS_@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN9NxsStringC2EPKc@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN9NxsStringC2ERKS_@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN9NxsStringpLEPKc@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN9NxsStringpLEc@Base 2.1.18 _ZN9NxsStringpLEd@Base 2.1.18 - (optional)_ZN9NxsStringpLEi@Base 2.1.18 - (optional)_ZN9NxsStringpLEl@Base 2.1.18 - (optional)_ZNK12NxsDataBlock5CloneEv@Base 2.1.18 - (optional)_ZNK12NxsException4whatEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN9NxsStringpLEi@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN9NxsStringpLEl@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK12NxsDataBlock5CloneEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK12NxsException4whatEv@Base 2.1.18 _ZNK12NxsException8nxs_whatEv@Base 2.1.18 - (optional)_ZNK12NxsTaxaBlock11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK12NxsTaxaBlock11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18 _ZNK12NxsTaxaBlock11GetMaxIndexEv@Base 2.1.18 - (optional)_ZNK12NxsTaxaBlock12GetNTaxTotalEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK12NxsTaxaBlock12GetNTaxTotalEv@Base 2.1.18 _ZNK12NxsTaxaBlock12WriteAsNexusERSo@Base 2.1.18 _ZNK12NxsTaxaBlock13GetTaxonLabelEj@Base 2.1.18 - (optional)_ZNK12NxsTaxaBlock13IsActiveTaxonEj@Base 2.1.18 - (optional)_ZNK12NxsTaxaBlock16GetNumActiveTaxaEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK12NxsTaxaBlock13IsActiveTaxonEj@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK12NxsTaxaBlock16GetNumActiveTaxaEv@Base 2.1.18 _ZNK12NxsTaxaBlock16TaxLabelToNumberERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZNK12NxsTaxaBlock17GetNumTaxonLabelsEv@Base 2.1.18 _ZNK12NxsTaxaBlock18GetIndicesForLabelERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18 _ZNK12NxsTaxaBlock21WriteTaxLabelsCommandERSo@Base 2.1.18 _ZNK12NxsTaxaBlock26CheckCapitalizedTaxonLabelERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZNK12NxsTaxaBlock27GetNumLabelsCurrentlyStoredEv@Base 2.1.18 - (optional)_ZNK12NxsTaxaBlock5CloneEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK12NxsTaxaBlock5CloneEv@Base 2.1.18 _ZNK12NxsTaxaBlock6ReportERSo@Base 2.1.18 - (optional)_ZNK12NxsTaxaBlock7GetNTaxEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK12NxsTaxaBlock7GetNTaxEv@Base 2.1.18 _ZNK12NxsTaxaBlock9FindTaxonERK9NxsString@Base 2.1.18 _ZNK13NxsSimpleEdge13WriteAsNewickERSob@Base 2.1.18 _ZNK13NxsSimpleNode13WriteAsNewickERSobbbPK15NxsTaxaBlockAPIb@Base 2.1.21+git20171002.4becff7 @@ -682,55 +682,55 @@ _ZNK13NxsSimpleTree19GetIntPathDistancesEb@Base 2.1.18 _ZNK13NxsSimpleTree20GetPreorderTraversalEv@Base 2.1.18 _ZNK13NxsTreesBlock11BriefReportER9NxsString@Base 2.1.18 - (optional)_ZNK13NxsTreesBlock11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK13NxsTreesBlock11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18 _ZNK13NxsTreesBlock11GetMaxIndexEv@Base 2.1.18 _ZNK13NxsTreesBlock11GetNumTreesEv@Base 2.1.18 _ZNK13NxsTreesBlock11ProcessTreeER22NxsFullTreeDescription@Base 2.1.18 - (optional)_ZNK13NxsTreesBlock12GetBlockNameB5cxx11Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK13NxsTreesBlock12GetBlockNameB5cxx11Ev@Base 2.1.18 _ZNK13NxsTreesBlock12WriteAsNexusERSo@Base 2.1.18 - (optional)_ZNK13NxsTreesBlock16WriteLinkCommandERSo@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK13NxsTreesBlock16WriteLinkCommandERSo@Base 2.1.18 _ZNK13NxsTreesBlock17TreeLabelToNumberERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZNK13NxsTreesBlock17WriteTreesCommandERSo@Base 2.1.18 _ZNK13NxsTreesBlock18GetIndicesForLabelERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18 _ZNK13NxsTreesBlock21WriteTranslateCommandERSo@Base 2.1.18 _ZNK13NxsTreesBlock22GetFullTreeDescriptionEj@Base 2.1.18 - (optional)_ZNK13NxsTreesBlock5CloneEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK13NxsTreesBlock5CloneEv@Base 2.1.18 _ZNK13NxsTreesBlock6ReportERSo@Base 2.1.18 _ZNK15NxsCodonTriplet12getSingleMutERKS_@Base 2.1.18 _ZNK15NxsTaxaBlockAPI12GetAllLabelsB5cxx11Ev@Base 2.1.18 - (optional)_ZNK16BogusToIndMapper11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18 - (optional)_ZNK16BogusToIndMapper11GetMaxIndexEv@Base 2.1.18 - (optional)_ZNK16BogusToIndMapper18GetIndicesForLabelERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK16BogusToIndMapper11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK16BogusToIndMapper11GetMaxIndexEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK16BogusToIndMapper18GetIndicesForLabelERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18 _ZNK17NxsDistancesBlock10IsDiagonalEv@Base 2.1.18 _ZNK17NxsDistancesBlock11GetDistanceEjj@Base 2.1.18 _ZNK17NxsDistancesBlock11GetTriangleEv@Base 2.1.18 - (optional)_ZNK17NxsDistancesBlock12GetBlockNameB5cxx11Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK17NxsDistancesBlock12GetBlockNameB5cxx11Ev@Base 2.1.18 _ZNK17NxsDistancesBlock12IsInterleaveEv@Base 2.1.18 _ZNK17NxsDistancesBlock12WriteAsNexusERSo@Base 2.1.18 _ZNK17NxsDistancesBlock13IsRectangularEv@Base 2.1.18 _ZNK17NxsDistancesBlock16GetMissingSymbolEv@Base 2.1.18 - (optional)_ZNK17NxsDistancesBlock16WriteLinkCommandERSo@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK17NxsDistancesBlock16WriteLinkCommandERSo@Base 2.1.18 _ZNK17NxsDistancesBlock17IsLowerTriangularEv@Base 2.1.18 _ZNK17NxsDistancesBlock17IsUpperTriangularEv@Base 2.1.18 _ZNK17NxsDistancesBlock18WriteFormatCommandERSo@Base 2.1.18 _ZNK17NxsDistancesBlock18WriteMatrixCommandERSo@Base 2.1.18 - (optional)_ZNK17NxsDistancesBlock5CloneEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK17NxsDistancesBlock5CloneEv@Base 2.1.18 _ZNK17NxsDistancesBlock6ReportERSo@Base 2.1.18 _ZNK17NxsDistancesBlock8GetNcharEv@Base 2.1.18 _ZNK17NxsDistancesBlock8IsLabelsEv@Base 2.1.18 _ZNK17NxsDistancesBlock9IsMissingEjj@Base 2.1.18 _ZNK17NxsUnalignedBlock11FormatStateB5cxx11E16NxsDiscreteDatum@Base 2.1.18 - (optional)_ZNK17NxsUnalignedBlock12GetBlockNameB5cxx11Ev@Base 2.1.18 - (optional)_ZNK17NxsUnalignedBlock12GetNTaxTotalEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK17NxsUnalignedBlock12GetBlockNameB5cxx11Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK17NxsUnalignedBlock12GetNTaxTotalEv@Base 2.1.18 _ZNK17NxsUnalignedBlock12WriteAsNexusERSo@Base 2.1.18 _ZNK17NxsUnalignedBlock15DebugShowMatrixERSoPKc@Base 2.1.18 _ZNK17NxsUnalignedBlock15TaxonIndHasDataEj@Base 2.1.18 - (optional)_ZNK17NxsUnalignedBlock16WriteLinkCommandERSo@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK17NxsUnalignedBlock16WriteLinkCommandERSo@Base 2.1.18 _ZNK17NxsUnalignedBlock17GetMatrixRowAsStrB5cxx11Ej@Base 2.1.18 _ZNK17NxsUnalignedBlock18WriteFormatCommandERSo@Base 2.1.18 _ZNK17NxsUnalignedBlock18WriteMatrixCommandERSo@Base 2.1.18 _ZNK17NxsUnalignedBlock23WriteStatesForMatrixRowERSoj@Base 2.1.18 - (optional)_ZNK17NxsUnalignedBlock5CloneEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK17NxsUnalignedBlock5CloneEv@Base 2.1.18 _ZNK17NxsUnalignedBlock6ReportERSo@Base 2.1.18 _ZNK17PublicNexusReader12GetTaxaBlockEj@Base 2.1.18 _ZNK17PublicNexusReader13GetTreesBlockEPK12NxsTaxaBlockj@Base 2.1.18 @@ -754,38 +754,38 @@ _ZNK17PublicNexusReader27GetNumTaxaAssociationBlocksEPK12NxsTaxaBlock@Base 2.1.18 _ZNK18NxsCharactersBlock10IsGapStateEjj@Base 2.1.18 _ZNK18NxsCharactersBlock10ShowStatesERSojj@Base 2.1.18 - (optional)_ZNK18NxsCharactersBlock11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18 _ZNK18NxsCharactersBlock11GetMaxIndexEv@Base 2.1.18 _ZNK18NxsCharactersBlock11IsInSymbolsEc@Base 2.1.18 _ZNK18NxsCharactersBlock11WriteStatesER16NxsDiscreteDatumPcj@Base 2.1.18 - (optional)_ZNK18NxsCharactersBlock12GetBlockNameB5cxx11Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock12GetBlockNameB5cxx11Ev@Base 2.1.18 _ZNK18NxsCharactersBlock12GetNumStatesEjj@Base 2.1.18 _ZNK18NxsCharactersBlock12WriteAsNexusERSo@Base 2.1.18 - (optional)_ZNK18NxsCharactersBlock13GetNCharTotalEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock13GetNCharTotalEv@Base 2.1.18 _ZNK18NxsCharactersBlock13IsPolymorphicEjj@Base 2.1.18 - (optional)_ZNK18NxsCharactersBlock13IsRespectCaseEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock13IsRespectCaseEv@Base 2.1.18 _ZNK18NxsCharactersBlock14IsMissingStateEjj@Base 2.1.18 _ZNK18NxsCharactersBlock15DebugShowMatrixERSobPKc@Base 2.1.18 - (optional)_ZNK18NxsCharactersBlock15GetNumObsStatesEjb@Base 2.1.18 - (optional)_ZNK18NxsCharactersBlock15GetObsNumStatesEjb@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock15GetNumObsStatesEjb@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock15GetObsNumStatesEjb@Base 2.1.18 _ZNK18NxsCharactersBlock15GetPairwiseDistEjjPKSt3setIjSt4lessIjESaIjEEbb@Base 2.1.18 _ZNK18NxsCharactersBlock15NumAmbigInTaxonEjPKSt3setIjSt4lessIjESaIjEEbb@Base 2.1.18 _ZNK18NxsCharactersBlock15ShowStateLabelsERSojjj@Base 2.1.18 _ZNK18NxsCharactersBlock16GetNumActiveCharEv@Base 2.1.18 - (optional)_ZNK18NxsCharactersBlock16WriteLinkCommandERSo@Base 2.1.18 - (optional)_ZNK18NxsCharactersBlock17CharLabelToNumberE9NxsString@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock16WriteLinkCommandERSo@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock17CharLabelToNumberE9NxsString@Base 2.1.18 _ZNK18NxsCharactersBlock17CharLabelToNumberERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 - (optional)_ZNK18NxsCharactersBlock17GetGapModeSettingEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock17GetGapModeSettingEv@Base 2.1.18 _ZNK18NxsCharactersBlock17GetMatrixRowAsStrB5cxx11Ej@Base 2.1.18 _ZNK18NxsCharactersBlock17GetStateLabelImplEjj@Base 2.1.18 _ZNK18NxsCharactersBlock18GetIndicesForLabelERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18 _ZNK18NxsCharactersBlock18GetMaxObsNumStatesEbb@Base 2.1.18 - (optional)_ZNK18NxsCharactersBlock18TaxonLabelToNumberE9NxsString@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock18TaxonLabelToNumberE9NxsString@Base 2.1.18 _ZNK18NxsCharactersBlock18WriteFormatCommandERSo@Base 2.1.18 _ZNK18NxsCharactersBlock18WriteMatrixCommandERSo@Base 2.1.18 _ZNK18NxsCharactersBlock20FindGappedCharactersERSt3setIjSt4lessIjESaIjEE@Base 2.1.18 - (optional)_ZNK18NxsCharactersBlock20GetCodonPosPartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 - (optional)_ZNK18NxsCharactersBlock21GetAllDatatypeMappersEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock20GetCodonPosPartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock21GetAllDatatypeMappersEv@Base 2.1.18 _ZNK18NxsCharactersBlock21WriteEliminateCommandERSo@Base 2.1.18 _ZNK18NxsCharactersBlock22FindConstantCharactersERSt3setIjSt4lessIjESaIjEE@Base 2.1.18 _ZNK18NxsCharactersBlock22WriteCharLabelsCommandERSo@Base 2.1.18 @@ -794,10 +794,10 @@ _ZNK18NxsCharactersBlock26GetMaximalStateSetOfColumnEj@Base 2.1.18 _ZNK18NxsCharactersBlock26WriteStatesForTaxonAsNexusERSojjj@Base 2.1.18 _ZNK18NxsCharactersBlock27WriteCharStateLabelsCommandERSo@Base 2.1.18 - (optional)_ZNK18NxsCharactersBlock30GetNxsTransformationManagerRefEv@Base 2.1.18 - (optional)_ZNK18NxsCharactersBlock31GetDefaultCodonPosPartitionNameB5cxx11Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock30GetNxsTransformationManagerRefEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock31GetDefaultCodonPosPartitionNameB5cxx11Ev@Base 2.1.18 _ZNK18NxsCharactersBlock33FirstTaxonStatesAreSubsetOfSecondEjjPKSt3setIjSt4lessIjESaIjEEbb@Base 2.1.18 - (optional)_ZNK18NxsCharactersBlock5CloneEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock5CloneEv@Base 2.1.18 _ZNK18NxsCharactersBlock6ReportERSo@Base 2.1.18 _ZNK19NxsAssumptionsBlock10GetCharSetE9NxsString@Base 2.1.18 _ZNK19NxsAssumptionsBlock12WriteAsNexusERSo@Base 2.1.18 @@ -810,27 +810,27 @@ _ZNK19NxsAssumptionsBlock20HasSetsBlockCommandsEv@Base 2.1.18 _ZNK19NxsAssumptionsBlock22HasCodonsBlockCommandsEv@Base 2.1.18 _ZNK19NxsAssumptionsBlock27HasAssumptionsBlockCommandsEv@Base 2.1.18 - (optional)_ZNK19NxsAssumptionsBlock35GetNxsTransformationManagerConstRefEv@Base 2.1.18 - (optional)_ZNK19NxsAssumptionsBlock5CloneEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK19NxsAssumptionsBlock35GetNxsTransformationManagerConstRefEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK19NxsAssumptionsBlock5CloneEv@Base 2.1.18 _ZNK19NxsAssumptionsBlock6ReportERSo@Base 2.1.18 - (optional)_ZNK21NxsTaxaBlockSurrogate12GetNTaxTotalEv@Base 2.1.18 - (optional)_ZNK21NxsTaxaBlockSurrogate13IsActiveTaxonEj@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK21NxsTaxaBlockSurrogate12GetNTaxTotalEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK21NxsTaxaBlockSurrogate13IsActiveTaxonEj@Base 2.1.18 _ZNK21NxsTaxaBlockSurrogate15GetTaxaBlockPtrEPi@Base 2.1.18 - (optional)_ZNK21NxsTaxaBlockSurrogate16GetNumActiveTaxaEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK21NxsTaxaBlockSurrogate16GetNumActiveTaxaEv@Base 2.1.18 _ZNK21NxsTaxaBlockSurrogate20WriteLinkTaxaCommandERSo@Base 2.1.18 - (optional)_ZNK21NxsTaxaBlockSurrogate7GetNTaxEv@Base 2.1.18 - (optional)_ZNK22NxsAssumptionsBlockAPI20GetDefaultIntWeightsEv@Base 2.1.18 - (optional)_ZNK22NxsAssumptionsBlockAPI23GetDefaultDoubleWeightsEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK21NxsTaxaBlockSurrogate7GetNTaxEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK22NxsAssumptionsBlockAPI20GetDefaultIntWeightsEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK22NxsAssumptionsBlockAPI23GetDefaultDoubleWeightsEv@Base 2.1.18 _ZNK22NxsFullTreeDescription13GetTreeTokensB5cxx11Ev@Base 2.1.18 _ZNK22NxsGeneticCodesManager15IsValidCodeNameERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 - (optional)_ZNK23NxsLabelToIndicesMapper27GetNumLabelsCurrentlyStoredEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK23NxsLabelToIndicesMapper27GetNumLabelsCurrentlyStoredEv@Base 2.1.18 _ZNK23NxsTaxaAssociationBlock12WriteAsNexusERSo@Base 2.1.18 - (optional)_ZNK23NxsTaxaAssociationBlock17GetFirstTaxaBlockEv@Base 2.1.18 - (optional)_ZNK23NxsTaxaAssociationBlock18GetSecondTaxaBlockEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK23NxsTaxaAssociationBlock17GetFirstTaxaBlockEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK23NxsTaxaAssociationBlock18GetSecondTaxaBlockEv@Base 2.1.18 _ZNK23NxsTaxaAssociationBlock20ProcessTaxaBlockNameERK9NxsStringR8NxsToken@Base 2.1.18 - (optional)_ZNK23NxsTaxaAssociationBlock33GetAssociatesForTaxonInFirstBlockEj@Base 2.1.18 - (optional)_ZNK23NxsTaxaAssociationBlock34GetAssociatesForTaxonInSecondBlockEj@Base 2.1.18 - (optional)_ZNK23NxsTaxaAssociationBlock5CloneEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK23NxsTaxaAssociationBlock33GetAssociatesForTaxonInFirstBlockEj@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK23NxsTaxaAssociationBlock34GetAssociatesForTaxonInSecondBlockEj@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK23NxsTaxaAssociationBlock5CloneEv@Base 2.1.18 _ZNK23NxsTaxaAssociationBlock6ReportERSo@Base 2.1.18 _ZNK24NxsTransformationManager10GetIntTypeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZNK24NxsTransformationManager10WriteWtSetERSo@Base 2.1.18 @@ -852,7 +852,7 @@ _ZNK25NxsDiscreteDatatypeMapper21StateCodeForNexusCharEcP8NxsTokenjjPKSt6vectorIiSaIiEERK9NxsString@Base 2.1.18 _ZNK25NxsDiscreteDatatypeMapper22BuildStateSubsetMatrixEv@Base 2.1.18 _ZNK25NxsDiscreteDatatypeMapper22DebugWriteMapperFieldsERSo@Base 2.1.18 - (optional)_ZNK25NxsDiscreteDatatypeMapper22StateCodeToNexusStringB5cxx11Eib@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK25NxsDiscreteDatatypeMapper22StateCodeToNexusStringB5cxx11Eib@Base 2.1.18 _ZNK25NxsDiscreteDatatypeMapper23GetNumStatesInStateCodeEi@Base 2.1.18 _ZNK25NxsDiscreteDatatypeMapper23GetPythonicStateVectorsEv@Base 2.1.18 _ZNK25NxsDiscreteDatatypeMapper24IsSemanticallyEquivalentERKS_@Base 2.1.18 @@ -861,9 +861,9 @@ _ZNK25NxsDiscreteDatatypeMapper28BuildStateIntersectionMatrixEv@Base 2.1.18 _ZNK25NxsStoreTokensBlockReader11ReportConstERSo@Base 2.1.18 _ZNK25NxsStoreTokensBlockReader12WriteAsNexusERSo@Base 2.1.18 - (optional)_ZNK25NxsStoreTokensBlockReader18TolerateEOFInBlockEv@Base 2.1.18 - (optional)_ZNK25NxsStoreTokensBlockReader5CloneEv@Base 2.1.18 - (optional)_ZNK25NxsStoreTokensBlockReader6ReportERSo@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK25NxsStoreTokensBlockReader18TolerateEOFInBlockEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK25NxsStoreTokensBlockReader5CloneEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK25NxsStoreTokensBlockReader6ReportERSo@Base 2.1.18 _ZNK8NxsBlock10CloneBlockERSt3mapISt4pairIPKS_NSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEPS_St4lessISA_ESaIS1_IKSA_SB_EEE@Base 2.1.18 _ZNK8NxsBlock12DemandEqualsERN9__gnu_cxx17__normal_iteratorIPK17ProcessedNxsTokenSt6vectorIS2_SaIS2_EEEERKS8_PKc@Base 2.1.18 _ZNK8NxsBlock12WriteAsNexusERSo@Base 2.1.18 @@ -876,19 +876,19 @@ _ZNK8NxsBlock17WriteTitleCommandERSo@Base 2.1.18 _ZNK8NxsBlock18DemandEndSemicolonER8NxsTokenPKc@Base 2.1.18 _ZNK8NxsBlock18TaxonLabelToNumberE9NxsString@Base 2.1.18 - (optional)_ZNK8NxsBlock18TolerateEOFInBlockEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK8NxsBlock18TolerateEOFInBlockEv@Base 2.1.18 _ZNK8NxsBlock19WriteBlockIDCommandERSo@Base 2.1.18 _ZNK8NxsBlock20GenerateNxsExceptionER8NxsTokenPKc@Base 2.1.18 _ZNK8NxsBlock20WriteSkippedCommandsERSo@Base 2.1.18 _ZNK8NxsBlock21GetImpliedBlocksConstEv@Base 2.1.18 _ZNK8NxsBlock23WriteBasicBlockCommandsERSo@Base 2.1.18 _ZNK8NxsBlock35GenerateUnexpectedTokenNxsExceptionER8NxsTokenPKc@Base 2.1.18 - (optional)_ZNK8NxsBlock5CloneEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK8NxsBlock5CloneEv@Base 2.1.18 _ZNK8NxsBlock5GetIDEv@Base 2.1.18 _ZNK8NxsBlock6ReportERSo@Base 2.1.18 _ZNK8NxsBlock7IsEmptyEv@Base 2.1.18 _ZNK8NxsBlock9IsEnabledEv@Base 2.1.18 - (optional)_ZNK8NxsToken15GetFilePositionEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK8NxsToken15GetFilePositionEv@Base 2.1.18 _ZNK9NxsReader13statusMessageERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZNK9NxsReader16GetBlockPriorityEP8NxsBlock@Base 2.1.18 _ZNK9NxsReader20GetAllTitlesForBlockB5cxx11EPK8NxsBlock@Base 2.1.18 @@ -905,226 +905,226 @@ _ZNK9NxsString21EqualsCaseInsensitiveERKS_@Base 2.1.18 _ZNK9NxsString7IsALongEv@Base 2.1.18 _ZNK9NxsString9IsADoubleEv@Base 2.1.18 - (optional)_ZNKSt5ctypeIcE8do_widenEc@Base 2.1.18 - (optional)_ZNSt11_Deque_baseIjSaIjEED1Ev@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt11_Deque_baseIjSaIjEED2Ev@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt11__copy_moveILb0ELb0ESt26random_access_iterator_tagE8__copy_mIPPKcSt20back_insert_iteratorISt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaISD_EEEEET0_T_SI_SH_@Base 2.1.18 - (optional)_ZNSt12_Destroy_auxILb0EE9__destroyIPSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIdSaIdEESt4lessIS8_ESaISt4pairIKS8_SB_EEEEEvT_SK_@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt12_Destroy_auxILb0EE9__destroyIPSt4pairI25NxsDiscreteDatatypeMapperSt3setIjSt4lessIjESaIjEEEEEvT_SB_@Base 2.1.18 - (optional)_ZNSt13_Bvector_baseISaIbEE13_M_deallocateEv@Base 2.1.18 - (optional)_ZNSt3mapI9NxsStringSt3setIjSt4lessIjESaIjEES2_IS0_ESaISt4pairIKS0_S5_EEEixERS8_@Base 2.1.18 - (optional)_ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEENS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISD_EEES9_IS5_ESaIS7_IKS5_SF_EEEixERSH_@Base 2.1.18 - (optional)_ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St4lessIS5_ESaISt4pairIKS5_S5_EEEixERS9_@Base 2.1.18 - (optional)_ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIdSaIdEESt4lessIS5_ESaISt4pairIKS5_S8_EEEixERSC_@Base 2.1.18 - (optional)_ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjSt4lessIS5_ESaISt4pairIKS5_jEEEixERS9_@Base 2.1.18 - (optional)_ZNSt3mapIc9NxsStringSt4lessIcESaISt4pairIKcS0_EEEixEOc@Base 2.1.18 - (optional)_ZNSt3mapIc9NxsStringSt4lessIcESaISt4pairIKcS0_EEEixERS4_@Base 2.1.18 - (optional)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE16NxsIntStepMatrixED1Ev@Base 2.1.21+git20180827.c71b264 - (optional)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE16NxsIntStepMatrixED2Ev@Base 2.1.21+git20180827.c71b264 - (optional)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE17NxsRealStepMatrixED1Ev@Base 2.1.21+git20180827.c71b264 - (optional)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE17NxsRealStepMatrixED2Ev@Base 2.1.21+git20180827.c71b264 - (optional)_ZNSt5dequeIPK13NxsSimpleNodeSaIS2_EE16_M_push_back_auxIJRKS2_EEEvDpOT_@Base 2.1.21+git20190531.feceb81 - (optional)_ZNSt6vectorI10NxsCommentSaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorI10NxsCommentSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorI10NxsCommentSaIS0_EED1Ev@Base 2.1.18 - (optional)_ZNSt6vectorI10NxsCommentSaIS0_EED2Ev@Base 2.1.18 - (optional)_ZNSt6vectorI16NxsDistanceDatumSaIS0_EED1Ev@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt6vectorI16NxsDistanceDatumSaIS0_EED2Ev@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt6vectorI17ProcessedNxsTokenSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorI17ProcessedNxsTokenSaIS0_EED1Ev@Base 2.1.18 - (optional)_ZNSt6vectorI17ProcessedNxsTokenSaIS0_EED2Ev@Base 2.1.18 - (optional)_ZNSt6vectorI19NxsCharacterPatternSaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorI22NxsFullTreeDescriptionSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorI23NxsDiscreteStateSetInfoSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorI23NxsDiscreteStateSetInfoSaIS0_EED1Ev@Base 2.1.18 - (optional)_ZNSt6vectorI23NxsDiscreteStateSetInfoSaIS0_EED2Ev@Base 2.1.18 - (optional)_ZNSt6vectorI9NxsStringSaIS0_EE17_M_default_appendEm@Base 2.1.18 - (optional)_ZNSt6vectorI9NxsStringSaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorI9NxsStringSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorI9NxsStringSaIS0_EE7reserveEm@Base 2.1.18 - (optional)_ZNSt6vectorI9NxsStringSaIS0_EED1Ev@Base 2.1.18 - (optional)_ZNSt6vectorI9NxsStringSaIS0_EED2Ev@Base 2.1.18 - (optional)_ZNSt6vectorIN18NxsCharactersBlock13DataTypesEnumESaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorIN18NxsCharactersBlock13DataTypesEnumESaIS1_EED1Ev@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt6vectorIN18NxsCharactersBlock13DataTypesEnumESaIS1_EED2Ev@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_default_appendEm@Base 2.1.18 - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEC1ERKS7_@Base 2.1.18 - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEC2ERKS7_@Base 2.1.18 - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 2.1.18 - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 2.1.18 - (optional)_ZNSt6vectorIP12NxsTaxaBlockSaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorIP12NxsTaxaBlockSaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorIP13NxsSimpleNodeSaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorIP13NxsSimpleNodeSaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20190531.feceb81 - (optional)_ZNSt6vectorIP13NxsSimpleNodeSaIS1_EE7reserveEm@Base 2.1.18 - (optional)_ZNSt6vectorIP13NxsSimpleNodeSaIS1_EED1Ev@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt6vectorIP13NxsSimpleNodeSaIS1_EED2Ev@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt6vectorIP13NxsTreesBlockSaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorIP17NxsDistancesBlockSaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorIP17NxsUnalignedBlockSaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorIP18NxsCharactersBlockSaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorIP19NxsAssumptionsBlockSaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorIP22NxsAssumptionsBlockAPISaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorIP23NxsTaxaAssociationBlockSaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorIP25NxsStoreTokensBlockReaderSaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorIPK13NxsSimpleNodeSaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 2.1.21+git20190531.feceb81 - (optional)_ZNSt6vectorIPK13NxsSimpleNodeSaIS2_EED1Ev@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt6vectorIPK13NxsSimpleNodeSaIS2_EED2Ev@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt6vectorIPK19NxsCharacterPatternSaIS2_EE17_M_default_appendEm@Base 2.1.18 - (optional)_ZNSt6vectorIPK25NxsDiscreteDatatypeMapperSaIS2_EED1Ev@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt6vectorIPK25NxsDiscreteDatatypeMapperSaIS2_EED2Ev@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt6vectorIS_I16NxsDistanceDatumSaIS0_EESaIS2_EE14_M_fill_assignEmRKS2_@Base 2.1.18 - (optional)_ZNSt6vectorIS_ISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES_IdSaIdEESt4lessIS6_ESaISt4pairIKS6_S8_EEESaISF_EESaISH_EE17_M_default_appendEm@Base 2.1.18 - (optional)_ZNSt6vectorIS_ISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES_IdSaIdEESt4lessIS6_ESaISt4pairIKS6_S8_EEESaISF_EESaISH_EED1Ev@Base 2.1.18 - (optional)_ZNSt6vectorIS_ISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES_IdSaIdEESt4lessIS6_ESaISt4pairIKS6_S8_EEESaISF_EESaISH_EED2Ev@Base 2.1.18 - (optional)_ZNSt6vectorIS_ISt3setIiSt4lessIiESaIiEESaIS4_EESaIS6_EE14_M_fill_assignEmRKS6_@Base 2.1.18 - (optional)_ZNSt6vectorIS_ISt3setIiSt4lessIiESaIiEESaIS4_EESaIS6_EED1Ev@Base 2.1.18 - (optional)_ZNSt6vectorIS_ISt3setIiSt4lessIiESaIiEESaIS4_EESaIS6_EED2Ev@Base 2.1.18 - (optional)_ZNSt6vectorIS_IbSaIbEESaIS1_EE14_M_fill_assignEmRKS1_@Base 2.1.18 - (optional)_ZNSt6vectorIS_IbSaIbEESaIS1_EED1Ev@Base 2.1.18 - (optional)_ZNSt6vectorIS_IbSaIbEESaIS1_EED2Ev@Base 2.1.18 - (optional)_ZNSt6vectorIS_IdSaIdEESaIS1_EE14_M_fill_assignEmRKS1_@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt6vectorIS_IdSaIdEESaIS1_EEC1ERKS3_@Base 2.1.18 - (optional)_ZNSt6vectorIS_IdSaIdEESaIS1_EEC2ERKS3_@Base 2.1.18 - (optional)_ZNSt6vectorIS_IdSaIdEESaIS1_EED1Ev@Base 2.1.18 - (optional)_ZNSt6vectorIS_IdSaIdEESaIS1_EED2Ev@Base 2.1.18 - (optional)_ZNSt6vectorIS_IiSaIiEESaIS1_EE14_M_fill_assignEmRKS1_@Base 2.1.18 - (optional)_ZNSt6vectorIS_IiSaIiEESaIS1_EE17_M_default_appendEm@Base 2.1.18 - (optional)_ZNSt6vectorIS_IiSaIiEESaIS1_EEC1ERKS3_@Base 2.1.18 - (optional)_ZNSt6vectorIS_IiSaIiEESaIS1_EEC2ERKS3_@Base 2.1.18 - (optional)_ZNSt6vectorIS_IiSaIiEESaIS1_EED1Ev@Base 2.1.18 - (optional)_ZNSt6vectorIS_IiSaIiEESaIS1_EED2Ev@Base 2.1.18 - (optional)_ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES_IdSaIdEESt4lessIS6_ESaISt4pairIKS6_S8_EEESaISF_EED1Ev@Base 2.1.18 - (optional)_ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES_IdSaIdEESt4lessIS6_ESaISt4pairIKS6_S8_EEESaISF_EED2Ev@Base 2.1.18 - (optional)_ZNSt6vectorISt3setIiSt4lessIiESaIiEESaIS4_EED1Ev@Base 2.1.18 - (optional)_ZNSt6vectorISt3setIiSt4lessIiESaIiEESaIS4_EED2Ev@Base 2.1.18 - (optional)_ZNSt6vectorISt3setIjSt4lessIjESaIjEESaIS4_EE17_M_default_appendEm@Base 2.1.18 - (optional)_ZNSt6vectorISt4pairI25NxsDiscreteDatatypeMapperSt3setIjSt4lessIjESaIjEEESaIS7_EE17_M_realloc_insertIJRKS7_EEEvN9__gnu_cxx17__normal_iteratorIPS7_S9_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorISt4pairI25NxsDiscreteDatatypeMapperSt3setIjSt4lessIjESaIjEEESaIS7_EE17_M_realloc_insertIJS7_EEEvN9__gnu_cxx17__normal_iteratorIPS7_S9_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorISt4pairI25NxsDiscreteDatatypeMapperSt3setIjSt4lessIjESaIjEEESaIS7_EE7reserveEm@Base 2.1.18 - (optional)_ZNSt6vectorISt4pairI25NxsDiscreteDatatypeMapperSt3setIjSt4lessIjESaIjEEESaIS7_EED1Ev@Base 2.1.18 - (optional)_ZNSt6vectorISt4pairI25NxsDiscreteDatatypeMapperSt3setIjSt4lessIjESaIjEEESaIS7_EED2Ev@Base 2.1.18 - (optional)_ZNSt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_ESaIS7_EE17_M_realloc_insertIJRKS7_EEEvN9__gnu_cxx17__normal_iteratorIPS7_S9_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_ESaIS7_EED1Ev@Base 2.1.18 - (optional)_ZNSt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_ESaIS7_EED2Ev@Base 2.1.18 - (optional)_ZNSt6vectorIaSaIaEE17_M_realloc_insertIJRKaEEEvN9__gnu_cxx17__normal_iteratorIPaS1_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorIaSaIaEE17_M_realloc_insertIJaEEEvN9__gnu_cxx17__normal_iteratorIPaS1_EEDpOT_@Base 2.1.21+git20190531.feceb81 - (optional)_ZNSt6vectorIaSaIaEED1Ev@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt6vectorIaSaIaEED2Ev@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt6vectorIbSaIbEE9push_backEb@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt6vectorIdSaIdEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPdS1_EEmRKd@Base 2.1.18 - (optional)_ZNSt6vectorIdSaIdEE17_M_default_appendEm@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorIdSaIdEE17_M_realloc_insertIJRKdEEEvN9__gnu_cxx17__normal_iteratorIPdS1_EEDpOT_@Base 2.1.21+git20180827.c71b264 - (optional)_ZNSt6vectorIdSaIdEED1Ev@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt6vectorIdSaIdEED2Ev@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt6vectorIiSaIiEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPiS1_EEmRKi@Base 2.1.18 - (optional)_ZNSt6vectorIiSaIiEE17_M_default_appendEm@Base 2.1.18 - (optional)_ZNSt6vectorIiSaIiEE17_M_realloc_insertIJRKiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorIiSaIiEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt6vectorIiSaIiEE7reserveEm@Base 2.1.18 - (optional)_ZNSt6vectorIiSaIiEE9push_backERKi@Base 2.1.18 - (optional)_ZNSt6vectorIiSaIiEED1Ev@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt6vectorIiSaIiEED2Ev@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt6vectorIjSaIjEE17_M_default_appendEm@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 2.1.21+git20180827.c71b264 - (optional)_ZNSt6vectorIjSaIjEED1Ev@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt6vectorIjSaIjEED2Ev@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt7__cxx1110_List_baseINS_12basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_clearEv@Base 2.1.18 - (optional)_ZNSt7__cxx1110_List_baseISt4pairINS_12basic_stringIcSt11char_traitsIcESaIcEEESt3setIjSt4lessIjESaIjEEESaISC_EE8_M_clearEv@Base 2.1.18 - (optional)_ZNSt7__cxx1110_List_baseISt4pairIdSt3setIjSt4lessIjESaIjEEESaIS7_EE8_M_clearEv@Base 2.1.18 - (optional)_ZNSt7__cxx1110_List_baseISt4pairIiSt3setIjSt4lessIjESaIjEEESaIS7_EE8_M_clearEv@Base 2.1.18 - (optional)_ZNSt7__cxx1110_List_baseISt6vectorI17ProcessedNxsTokenSaIS2_EESaIS4_EE8_M_clearEv@Base 2.1.18 - (optional)_ZNSt7__cxx1110_List_baseISt6vectorINS_12basic_stringIcSt11char_traitsIcESaIcEEESaIS6_EESaIS8_EE8_M_clearEv@Base 2.1.18 - (optional)_ZNSt7__cxx1110_List_baseISt6vectorIiSaIiEESaIS3_EE8_M_clearEv@Base 2.1.18 - (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC1IS3_EEPKcRKS3_@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC2IS3_EEPKcRKS3_@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt7__cxx114listIP8NxsBlockSaIS2_EE6removeERKS2_@Base 2.1.21+git20190531.feceb81 - (optional)_ZNSt7__cxx114listISt6vectorIiSaIiEESaIS3_EE14_M_fill_assignEmRKS3_@Base 2.1.18 - (optional)_ZNSt8_Rb_treeI19NxsCharacterPatternS0_St9_IdentityIS0_ESt4lessIS0_ESaIS0_EE24_M_get_insert_unique_posERKS0_@Base 2.1.18 - (optional)_ZNSt8_Rb_treeI19NxsCharacterPatternS0_St9_IdentityIS0_ESt4lessIS0_ESaIS0_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS0_ERKS0_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt8_Rb_treeI9NxsStringSt4pairIKS0_St3setIjSt4lessIjESaIjEEESt10_Select1stIS8_ES4_IS0_ESaIS8_EE24_M_get_insert_unique_posERS2_@Base 2.1.18 - (optional)_ZNSt8_Rb_treeI9NxsStringSt4pairIKS0_St3setIjSt4lessIjESaIjEEESt10_Select1stIS8_ES4_IS0_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS2_@Base 2.1.21+git20190531.feceb81 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St9_IdentityIS5_ESt4lessIS5_ESaIS5_EE16_M_insert_uniqueIRKS5_EESt4pairISt17_Rb_tree_iteratorIS5_EbEOT_@Base 2.1.18 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St9_IdentityIS5_ESt4lessIS5_ESaIS5_EE16_M_insert_uniqueIS5_EESt4pairISt17_Rb_tree_iteratorIS5_EbEOT_@Base 2.1.18 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St9_IdentityIS5_ESt4lessIS5_ESaIS5_EE24_M_get_insert_unique_posERKS5_@Base 2.1.18 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St9_IdentityIS5_ESt4lessIS5_ESaIS5_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS5_ERKS5_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_16NxsIntStepMatrixESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE11equal_rangeERS7_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_16NxsIntStepMatrixESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE22_M_emplace_hint_uniqueIJS6_IS5_S8_EEEESt17_Rb_tree_iteratorIS9_ESt23_Rb_tree_const_iteratorIS9_EDpOT_@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_16NxsIntStepMatrixESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE24_M_get_insert_unique_posERS7_@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_16NxsIntStepMatrixESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS9_ERS7_@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_17NxsRealStepMatrixESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE11equal_rangeERS7_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_17NxsRealStepMatrixESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE22_M_emplace_hint_uniqueIJS6_IS5_S8_EEEESt17_Rb_tree_iteratorIS9_ESt23_Rb_tree_const_iteratorIS9_EDpOT_@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_17NxsRealStepMatrixESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE24_M_get_insert_unique_posERS7_@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_17NxsRealStepMatrixESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS9_ERS7_@Base 2.1.21+git20210811.b1213a7 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_NS0_4listIP8NxsBlockSaISA_EEEESt10_Select1stISD_ESt4lessIS5_ESaISD_EE11equal_rangeERS7_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_NS0_4listIP8NxsBlockSaISA_EEEESt10_Select1stISD_ESt4lessIS5_ESaISD_EE24_M_get_insert_unique_posERS7_@Base 2.1.18 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_NS0_4listIP8NxsBlockSaISA_EEEESt10_Select1stISD_ESt4lessIS5_ESaISD_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISD_ERS7_@Base 2.1.18 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_NS0_4listIS6_IS5_St3setIjSt4lessIjESaIjEEESaISE_EEEESt10_Select1stISH_ESA_IS5_ESaISH_EE24_M_get_insert_unique_posERS7_@Base 2.1.18 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_NS0_4listIS6_IS5_St3setIjSt4lessIjESaIjEEESaISE_EEEESt10_Select1stISH_ESA_IS5_ESaISH_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISH_ERS7_@Base 2.1.18 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_NS0_4listIS6_IdSt3setIjSt4lessIjESaIjEEESaISE_EEEESt10_Select1stISH_ESA_IS5_ESaISH_EE11equal_rangeERS7_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_NS0_4listIS6_IdSt3setIjSt4lessIjESaIjEEESaISE_EEEESt10_Select1stISH_ESA_IS5_ESaISH_EE24_M_get_insert_unique_posERS7_@Base 2.1.18 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_NS0_4listIS6_IdSt3setIjSt4lessIjESaIjEEESaISE_EEEESt10_Select1stISH_ESA_IS5_ESaISH_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISH_ERS7_@Base 2.1.18 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_NS0_4listIS6_IiSt3setIjSt4lessIjESaIjEEESaISE_EEEESt10_Select1stISH_ESA_IS5_ESaISH_EE11equal_rangeERS7_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_NS0_4listIS6_IiSt3setIjSt4lessIjESaIjEEESaISE_EEEESt10_Select1stISH_ESA_IS5_ESaISH_EE24_M_get_insert_unique_posERS7_@Base 2.1.18 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_NS0_4listIS6_IiSt3setIjSt4lessIjESaIjEEESaISE_EEEESt10_Select1stISH_ESA_IS5_ESaISH_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISH_ERS7_@Base 2.1.18 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PK8NxsBlockESt10_Select1stISB_ESt4lessIS5_ESaISB_EE24_M_get_insert_unique_posERS7_@Base 2.1.18 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PK8NxsBlockESt10_Select1stISB_ESt4lessIS5_ESaISB_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISB_ERS7_@Base 2.1.21+git20190531.feceb81 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_@Base 2.1.18 - 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(optional)_ZSt16__do_uninit_copyIN9__gnu_cxx17__normal_iteratorIPKSt6vectorIiSaIiEES2_IS4_SaIS4_EEEEPS4_ET0_T_SC_SB_@Base 2.1.21+git20210811.b1213a7 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZSt16__do_uninit_copyIPK9NxsStringPS0_ET0_T_S5_S4_@Base 2.1.21+git20210811.b1213a7 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZSt16__do_uninit_copyIPKSt4pairI25NxsDiscreteDatatypeMapperSt3setIjSt4lessIjESaIjEEEPS7_ET0_T_SC_SB_@Base 2.1.21+git20210811.b1213a7 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZSt18__do_uninit_fill_nIPSt6vectorI16NxsDistanceDatumSaIS1_EEmS3_ET_S5_T0_RKT1_@Base 2.1.21+git20210811.b1213a7 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZSt18__do_uninit_fill_nIPSt6vectorISt3setIiSt4lessIiESaIiEESaIS5_EEmS7_ET_S9_T0_RKT1_@Base 2.1.21+git20210811.b1213a7 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZSt18__do_uninit_fill_nIPSt6vectorIbSaIbEEmS2_ET_S4_T0_RKT1_@Base 2.1.21+git20210811.b1213a7 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZSt18__do_uninit_fill_nIPSt6vectorIdSaIdEEmS2_ET_S4_T0_RKT1_@Base 2.1.21+git20210811.b1213a7 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZSt18__do_uninit_fill_nIPSt6vectorIiSaIiEEmS2_ET_S4_T0_RKT1_@Base 2.1.21+git20210811.b1213a7 (optional)_ZSt19piecewise_construct@Base 2.1.21+git20210811.b1213a7 - (optional)_ZSt8_DestroyIPSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES0_IdSaIdEESt4lessIS7_ESaISt4pairIKS7_S9_EEESaISG_EEEvT_SK_@Base 2.1.21+git20210811.b1213a7 - (optional)_ZSt8_DestroyIPSt6vectorIiSaIiEEEvT_S4_@Base 2.1.21+git20210811.b1213a7 - (optional)_ZSteqIcSt11char_traitsIcESaIcEEbRKNSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_@Base 2.1.21+git20210811.b1213a7 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZSt8_DestroyIPSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES0_IdSaIdEESt4lessIS7_ESaISt4pairIKS7_S9_EEESaISG_EEEvT_SK_@Base 2.1.21+git20210811.b1213a7 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZSt8_DestroyIPSt6vectorIiSaIiEEEvT_S4_@Base 2.1.21+git20210811.b1213a7 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZSteqIcSt11char_traitsIcESaIcEEbRKNSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_@Base 2.1.21+git20210811.b1213a7 _ZTI12NxsDataBlock@Base 2.1.18 _ZTI12NxsException@Base 2.1.18 _ZTI12NxsTaxaBlock@Base 2.1.18 _ZTI13NxsTreesBlock@Base 2.1.18 _ZTI15NxsBlockFactory@Base 2.1.18 _ZTI15NxsTaxaBlockAPI@Base 2.1.18 - (optional)_ZTI16BogusToIndMapper@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTI16BogusToIndMapper@Base 2.1.18 _ZTI16NxsTreesBlockAPI@Base 2.1.18 _ZTI17NxsDistancesBlock@Base 2.1.18 _ZTI17NxsUnalignedBlock@Base 2.1.18 @@ -1135,7 +1135,7 @@ _ZTI19NxsAssumptionsBlock@Base 2.1.18 _ZTI19NxsDataBlockFactory@Base 2.1.18 _ZTI19NxsTaxaBlockFactory@Base 2.1.18 - (optional)_ZTI20NxsCloneBlockFactory@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTI20NxsCloneBlockFactory@Base 2.1.18 _ZTI20NxsTreesBlockFactory@Base 2.1.18 _ZTI21NxsCharactersBlockAPI@Base 2.1.18 _ZTI21NxsTaxaBlockSurrogate@Base 2.1.18 @@ -1144,7 +1144,7 @@ _ZTI23NxsTaxaAssociationBlock@Base 2.1.18 _ZTI24NxsDistancesBlockFactory@Base 2.1.18 _ZTI24NxsUnalignedBlockFactory@Base 2.1.18 - (optional)_ZTI24WtSetVectorItemValidator@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTI24WtSetVectorItemValidator@Base 2.1.18 _ZTI25ExceptionRaisingNxsReader@Base 2.1.18 _ZTI25NxsCharactersBlockFactory@Base 2.1.18 _ZTI25NxsSetVectorItemValidator@Base 2.1.18 @@ -1152,7 +1152,7 @@ _ZTI25NxsUnimplementedException@Base 2.1.18 _ZTI26NxsAssumptionsBlockFactory@Base 2.1.18 _ZTI26NxsTaxaAssociationBlockAPI@Base 2.1.18 - (optional)_ZTI27DefaultErrorReportNxsReader@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTI27DefaultErrorReportNxsReader@Base 2.1.18 _ZTI27DuplicatedLabelNxsException@Base 2.1.18 _ZTI28NxsDefaultPublicBlockFactory@Base 2.1.18 _ZTI30NxsTaxaAssociationBlockFactory@Base 2.1.18 @@ -1209,48 +1209,48 @@ _ZTSN17NxsUnalignedBlock19NxsX_NoDataForTaxonE@Base 2.1.18 _ZTSN9NxsString15NxsX_NotANumberE@Base 2.1.18 _ZTV12NxsDataBlock@Base 2.1.18 - (optional)_ZTV12NxsException@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV12NxsException@Base 2.1.18 _ZTV12NxsTaxaBlock@Base 2.1.18 _ZTV13NxsTreesBlock@Base 2.1.18 _ZTV15NxsTaxaBlockAPI@Base 2.1.18 - (optional)_ZTV16BogusToIndMapper@Base 2.1.18 - (optional)_ZTV16NxsTreesBlockAPI@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV16BogusToIndMapper@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV16NxsTreesBlockAPI@Base 2.1.18 _ZTV17NxsDistancesBlock@Base 2.1.18 _ZTV17NxsUnalignedBlock@Base 2.1.18 _ZTV17PublicNexusReader@Base 2.1.18 _ZTV18NxsCharactersBlock@Base 2.1.18 - (optional)_ZTV18NxsNCLAPIException@Base 2.1.18 - (optional)_ZTV18NxsX_UnexpectedEOF@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV18NxsNCLAPIException@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV18NxsX_UnexpectedEOF@Base 2.1.18 _ZTV19NxsAssumptionsBlock@Base 2.1.18 _ZTV19NxsDataBlockFactory@Base 2.1.18 _ZTV19NxsTaxaBlockFactory@Base 2.1.18 - (optional)_ZTV20NxsCloneBlockFactory@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV20NxsCloneBlockFactory@Base 2.1.18 _ZTV20NxsTreesBlockFactory@Base 2.1.18 - (optional)_ZTV21NxsCharactersBlockAPI@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV21NxsCharactersBlockAPI@Base 2.1.18 _ZTV21NxsTaxaBlockSurrogate@Base 2.1.18 - (optional)_ZTV22NxsAssumptionsBlockAPI@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV22NxsAssumptionsBlockAPI@Base 2.1.18 _ZTV23NxsTaxaAssociationBlock@Base 2.1.18 _ZTV24NxsDistancesBlockFactory@Base 2.1.18 _ZTV24NxsUnalignedBlockFactory@Base 2.1.18 - (optional)_ZTV24WtSetVectorItemValidator@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV24WtSetVectorItemValidator@Base 2.1.18 _ZTV25ExceptionRaisingNxsReader@Base 2.1.18 _ZTV25NxsCharactersBlockFactory@Base 2.1.18 _ZTV25NxsStoreTokensBlockReader@Base 2.1.18 - (optional)_ZTV25NxsUnimplementedException@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV25NxsUnimplementedException@Base 2.1.18 _ZTV26NxsAssumptionsBlockFactory@Base 2.1.18 - (optional)_ZTV26NxsTaxaAssociationBlockAPI@Base 2.1.18 - (optional)_ZTV27DefaultErrorReportNxsReader@Base 2.1.18 - (optional)_ZTV27DuplicatedLabelNxsException@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV26NxsTaxaAssociationBlockAPI@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV27DefaultErrorReportNxsReader@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV27DuplicatedLabelNxsException@Base 2.1.18 _ZTV28NxsDefaultPublicBlockFactory@Base 2.1.18 _ZTV30NxsTaxaAssociationBlockFactory@Base 2.1.18 - (optional)_ZTV31NxsSignalCanceledParseException@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV31NxsSignalCanceledParseException@Base 2.1.18 _ZTV8NxsBlock@Base 2.1.18 _ZTV8NxsToken@Base 2.1.18 _ZTV9NxsReader@Base 2.1.18 - (optional)_ZThn192_N12NxsDataBlockD0Ev@Base 2.1.18 - (optional)_ZThn192_N12NxsDataBlockD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn192_N12NxsDataBlockD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn192_N12NxsDataBlockD1Ev@Base 2.1.18 _ZThn192_N12NxsTaxaBlock14AddNewIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 - (optional)_ZThn192_N12NxsTaxaBlock14AppendNewLabelERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn192_N12NxsTaxaBlock14AppendNewLabelERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZThn192_N12NxsTaxaBlock15AddNewPartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEE@Base 2.1.18 _ZThn192_N12NxsTaxaBlockD0Ev@Base 2.1.18 _ZThn192_N12NxsTaxaBlockD1Ev@Base 2.1.18 @@ -1264,27 +1264,27 @@ _ZThn192_N17NxsUnalignedBlockD1Ev@Base 2.1.18 _ZThn192_N18NxsCharactersBlock14AddNewIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 _ZThn192_N18NxsCharactersBlock15AddNewPartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEE@Base 2.1.18 - (optional)_ZThn192_N18NxsCharactersBlockD0Ev@Base 2.1.18 - (optional)_ZThn192_N18NxsCharactersBlockD1Ev@Base 2.1.18 - (optional)_ZThn192_NK12NxsTaxaBlock11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn192_N18NxsCharactersBlockD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn192_N18NxsCharactersBlockD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn192_NK12NxsTaxaBlock11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18 _ZThn192_NK12NxsTaxaBlock11GetMaxIndexEv@Base 2.1.18 _ZThn192_NK12NxsTaxaBlock18GetIndicesForLabelERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18 _ZThn192_NK12NxsTaxaBlock27GetNumLabelsCurrentlyStoredEv@Base 2.1.18 - (optional)_ZThn192_NK13NxsTreesBlock11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn192_NK13NxsTreesBlock11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18 _ZThn192_NK13NxsTreesBlock11GetMaxIndexEv@Base 2.1.18 _ZThn192_NK13NxsTreesBlock18GetIndicesForLabelERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18 - (optional)_ZThn192_NK17NxsDistancesBlock12GetBlockNameB5cxx11Ev@Base 2.1.21+git20171002.4becff7 - (optional)_ZThn192_NK17NxsUnalignedBlock12GetBlockNameB5cxx11Ev@Base 2.1.21+git20171002.4becff7 - (optional)_ZThn192_NK17NxsUnalignedBlock12GetNTaxTotalEv@Base 2.1.18 - (optional)_ZThn192_NK18NxsCharactersBlock11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn192_NK17NxsDistancesBlock12GetBlockNameB5cxx11Ev@Base 2.1.21+git20171002.4becff7 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn192_NK17NxsUnalignedBlock12GetBlockNameB5cxx11Ev@Base 2.1.21+git20171002.4becff7 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn192_NK17NxsUnalignedBlock12GetNTaxTotalEv@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn192_NK18NxsCharactersBlock11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18 _ZThn192_NK18NxsCharactersBlock11GetMaxIndexEv@Base 2.1.18 _ZThn192_NK18NxsCharactersBlock18GetIndicesForLabelERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18 - (optional)_ZThn200_N12NxsDataBlockD0Ev@Base 2.1.18 - (optional)_ZThn200_N12NxsDataBlockD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn200_N12NxsDataBlockD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn200_N12NxsDataBlockD1Ev@Base 2.1.18 _ZThn200_N13NxsTreesBlockD0Ev@Base 2.1.18 _ZThn200_N13NxsTreesBlockD1Ev@Base 2.1.18 - (optional)_ZThn200_N18NxsCharactersBlockD0Ev@Base 2.1.18 - (optional)_ZThn200_N18NxsCharactersBlockD1Ev@Base 2.1.18 - (optional)_ZThn200_NK13NxsTreesBlock12GetBlockNameB5cxx11Ev@Base 2.1.21+git20171002.4becff7 - (optional)_ZThn200_NK18NxsCharactersBlock12GetBlockNameB5cxx11Ev@Base 2.1.21+git20171002.4becff7 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn200_N18NxsCharactersBlockD0Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn200_N18NxsCharactersBlockD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn200_NK13NxsTreesBlock12GetBlockNameB5cxx11Ev@Base 2.1.21+git20171002.4becff7 +#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn200_NK18NxsCharactersBlock12GetBlockNameB5cxx11Ev@Base 2.1.21+git20171002.4becff7 gFormatNames@Base 2.1.18 dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libncl-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'ncl-tools-dbgsym' in '../ncl-tools-dbgsym_2.1.21+git20210811.b1213a7-6_amd64.deb'. dpkg-deb: building package 'ncl-tools' in '../ncl-tools_2.1.21+git20210811.b1213a7-6_amd64.deb'. dpkg-deb: building package 'libncl2' in '../libncl2_2.1.21+git20210811.b1213a7-6_amd64.deb'. dpkg-deb: building package 'libncl2-dbgsym' in '../libncl2-dbgsym_2.1.21+git20210811.b1213a7-6_amd64.deb'. dpkg-deb: building package 'libncl-dev' in '../libncl-dev_2.1.21+git20210811.b1213a7-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libncl_2.1.21+git20210811.b1213a7-6_amd64.buildinfo dpkg-genchanges --build=binary -O../libncl_2.1.21+git20210811.b1213a7-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/99184 and its subdirectories I: Current time: Mon Mar 2 03:58:19 -12 2026 I: pbuilder-time-stamp: 1772467099 Tue Jan 28 09:35:20 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Tue Jan 28 09:35:20 UTC 2025 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Tue Jan 28 10:00:21 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Tue Jan 28 10:00:21 UTC 2025 I: libncl_2.1.21+git20210811.b1213a7-6_amd64.changes: Format: 1.8 Date: Sun, 25 Aug 2024 11:33:47 +0200 Source: libncl Binary: libncl-dev libncl2 libncl2-dbgsym ncl-tools ncl-tools-dbgsym Architecture: amd64 Version: 2.1.21+git20210811.b1213a7-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libncl-dev - NEXUS Class Library (static lib and header files) libncl2 - NEXUS Class Library ncl-tools - tools to deal with NEXUS files Closes: 1015505 1075191 Changes: libncl (2.1.21+git20210811.b1213a7-6) unstable; urgency=medium . * d/rules: forcefully run LTO builds. * d/libncl2.symbols.amd64: mark symbols leaked by the compiler optional. (Closes: #1015505, #1075191) * d/control: add myself to uploaders. * d/control: declare compliance to standards version 4.7.0. Checksums-Sha1: 10d6f208f1cfa93e3cbfc2c586f7545fa0883734 598816 libncl-dev_2.1.21+git20210811.b1213a7-6_amd64.deb 1d50b7074f2c0990c2fb014f571dc467d5254623 6177536 libncl2-dbgsym_2.1.21+git20210811.b1213a7-6_amd64.deb 3e698dfb709eae89e541e95ffc5fd36705e81ae7 383040 libncl2_2.1.21+git20210811.b1213a7-6_amd64.deb 8b23ca32d67a8a6de950e0720422fc9eb374d6dd 7064 libncl_2.1.21+git20210811.b1213a7-6_amd64.buildinfo 78542d72a15aea40fae11bcc7dab050af40409e2 4625592 ncl-tools-dbgsym_2.1.21+git20210811.b1213a7-6_amd64.deb ba7c90d8fda1e7d01ac1d0e31ffc4c07be4f9ddb 190028 ncl-tools_2.1.21+git20210811.b1213a7-6_amd64.deb Checksums-Sha256: 6f02c78ddf3c25c3a0422135c998bab99b0082857660376a82801c13df1f7824 598816 libncl-dev_2.1.21+git20210811.b1213a7-6_amd64.deb 64220230eb815889149c35be57a9b70b9499d4adec32c047f719f60a72946478 6177536 libncl2-dbgsym_2.1.21+git20210811.b1213a7-6_amd64.deb bd234719d49f76df46089d8eae3740588ca084a2ec6963822edd2df710db7a37 383040 libncl2_2.1.21+git20210811.b1213a7-6_amd64.deb 0b5cf3b57f0d4fc57319f5e503c3c5ac6b3284859d92082d45dc6b2c829a4d11 7064 libncl_2.1.21+git20210811.b1213a7-6_amd64.buildinfo f6c27adfbf54ab4bbc4ff65f8f15a0fba938aa1607aef31e3e06a70729e3cb5f 4625592 ncl-tools-dbgsym_2.1.21+git20210811.b1213a7-6_amd64.deb b86701c31e93b5447d95e425b7043a01b8e58970f8b9a5a325c6bc3e36a1b0e8 190028 ncl-tools_2.1.21+git20210811.b1213a7-6_amd64.deb Files: ea0b4932841aaef14d31ae4fbad9f6ae 598816 libdevel optional libncl-dev_2.1.21+git20210811.b1213a7-6_amd64.deb 506026a05d0a57a36aca6da49d36a5b9 6177536 debug optional libncl2-dbgsym_2.1.21+git20210811.b1213a7-6_amd64.deb 00c5b1db1d0e41f551bd530a355c8821 383040 libs optional libncl2_2.1.21+git20210811.b1213a7-6_amd64.deb a610dd14f798b1e72bee3d740888e43c 7064 science optional libncl_2.1.21+git20210811.b1213a7-6_amd64.buildinfo 88158236edeec751f193e7748d1b7c9d 4625592 debug optional ncl-tools-dbgsym_2.1.21+git20210811.b1213a7-6_amd64.deb 7bc383ae076ac103dbc804b160c27c54 190028 science optional ncl-tools_2.1.21+git20210811.b1213a7-6_amd64.deb Tue Jan 28 10:00:23 UTC 2025 I: W: /var/lib/schroot/session/jenkins-reproducible-unstable-diffoscope-2a05fa0b-6d27-4c18-bf86-00a38465b975: Failed to stat file: No such file or directory diffoscope 286 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_20-43930.service # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/r-b-build.Bl1VUZRZ/libncl_2.1.21+git20210811.b1213a7-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Bl1VUZRZ/libncl_2.1.21+git20210811.b1213a7-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Bl1VUZRZ/libncl_2.1.21+git20210811.b1213a7-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Bl1VUZRZ/b1/libncl_2.1.21+git20210811.b1213a7-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Bl1VUZRZ/b2/libncl_2.1.21+git20210811.b1213a7-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.004s) 0.004s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 257ms CPU time consumed: 245ms Tue Jan 28 10:00:23 UTC 2025 I: W: /var/lib/schroot/session/jenkins-reproducible-unstable-diffoscope-2a05fa0b-6d27-4c18-bf86-00a38465b975: Failed to stat file: No such file or directory diffoscope 286 found no differences in the changes files, and a .buildinfo file also exists. Tue Jan 28 10:00:23 UTC 2025 I: libncl from unstable built successfully and reproducibly on amd64. Tue Jan 28 10:00:25 UTC 2025 I: Submitting .buildinfo files to external archives: Tue Jan 28 10:00:25 UTC 2025 I: Submitting 8.0K b1/libncl_2.1.21+git20210811.b1213a7-6_amd64.buildinfo.asc Tue Jan 28 10:00:26 UTC 2025 I: Submitting 8.0K b2/libncl_2.1.21+git20210811.b1213a7-6_amd64.buildinfo.asc Tue Jan 28 10:00:27 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Jan 28 10:00:27 UTC 2025 I: Done submitting .buildinfo files. Tue Jan 28 10:00:27 UTC 2025 I: Removing signed libncl_2.1.21+git20210811.b1213a7-6_amd64.buildinfo.asc files: removed './b1/libncl_2.1.21+git20210811.b1213a7-6_amd64.buildinfo.asc' removed './b2/libncl_2.1.21+git20210811.b1213a7-6_amd64.buildinfo.asc'