Mon Oct 28 14:27:20 UTC 2024 I: starting to build libedlib/unstable/amd64 on jenkins on '2024-10-28 14:27' Mon Oct 28 14:27:20 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_32/24341/console.log Mon Oct 28 14:27:20 UTC 2024 I: Downloading source for unstable/libedlib=1.2.7-6 --2024-10-28 14:27:20-- http://deb.debian.org/debian/pool/main/libe/libedlib/libedlib_1.2.7-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2389 (2.3K) [text/prs.lines.tag] Saving to: ‘libedlib_1.2.7-6.dsc’ 0K .. 100% 297M=0s 2024-10-28 14:27:20 (297 MB/s) - ‘libedlib_1.2.7-6.dsc’ saved [2389/2389] Mon Oct 28 14:27:20 UTC 2024 I: libedlib_1.2.7-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libedlib Binary: libedlib1, libedlib-dev, edlib-aligner, python3-edlib Architecture: any Version: 1.2.7-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/Martinsos/edlib Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/libedlib Vcs-Git: https://salsa.debian.org/med-team/libedlib.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, dh-sequence-python3, d-shlibs, rename, cython3, python3-all-dev, python3-setuptools Package-List: edlib-aligner deb science optional arch=any libedlib-dev deb libdevel optional arch=any libedlib1 deb libs optional arch=any python3-edlib deb python optional arch=any Checksums-Sha1: 9e3702547e7c789015df742f84b987bec43811c5 4318998 libedlib_1.2.7.orig.tar.gz 759885673bcd2b65df1e146d38ca291c0a39a68b 7604 libedlib_1.2.7-6.debian.tar.xz Checksums-Sha256: 8767bc1b04a1a67282d57662e5702c4908996e96b1753b5520921ff189974621 4318998 libedlib_1.2.7.orig.tar.gz 9658aa68789c15bfc99ca921e054f0ca22a19fe54e3f898a2081e5428a0d6c96 7604 libedlib_1.2.7-6.debian.tar.xz Files: 77917d44bfd08216f2dd4480578688c2 4318998 libedlib_1.2.7.orig.tar.gz 7671249397981f88d56c9b603579f19b 7604 libedlib_1.2.7-6.debian.tar.xz Dgit: d93b8a9602cbc0d28f1532a96d2f358266020c8f debian archive/debian/1.2.7-6 https://git.dgit.debian.org/libedlib -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmaSzNEUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqlORAAnAlDygDmsRWHr3+aK0STtazDcGkF ctHwajdxm75GHbjLFGUrpA6tjPygYUILJKkGieb19JqPKdmirYVVOyg5Ltu+WJ1h ZQWzVxESOjFSzGqP3eIziZXDnSVm+UbREzfQmjDJmTfjZMWgRUrDjhT4Q1AoWVL0 H/RuuR7JhKAvbeI5TfePhbL3WSIW1W4tHQTwat+pD610u6YrMcIVTSHs6nXBtg7e o25m5w1jv8bbhUyzhjGbie1ylE3W95cm/w+hfe8jDFTr9ddltV1gU4u3FcZNV7AG TLidtDtoVDwYtkcjMVWKrP97Gf6eyLWwzFYhVn2ts/Kv+lTyVP9IDOAwJPnewcni BBEBIyMBStYwsYmTmitTGSmX6rWckFbhfmYBwJ8xPotKptaC0o0nafpdeJeRUIFx cmrYF2egeNtjiZfvxeOwZ7H9g4UG0/dUWlGOAP4gehSunWFldcUrGLYCY8CRfIwT IsCgQBGm7nLeyAwFBI4i7YzCznXz+U9jFcwFtQ2rXdELZH3hOoAMBIsas0Uj6++O jQ4z1HBukfN97Bw5tIbKKXy6ifmcO8Fj64hwTWQsT73CfwayuYks+XvQMDBiBpgE rlt1+Te/sPPqrD8+2BmAnU0as4c/fVZobGtQhOwbopZ4bTnIB5B8jYPpZUMiYsAu eRUYoHjPHgrQ2lM= =n0hE -----END PGP SIGNATURE----- Mon Oct 28 14:27:20 UTC 2024 I: Checking whether the package is not for us Mon Oct 28 14:27:20 UTC 2024 I: Starting 1st build on remote node ionos5-amd64.debian.net. Mon Oct 28 14:27:20 UTC 2024 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Mon Oct 28 14:28:23 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 30 08:50:20 -12 2025 I: pbuilder-time-stamp: 1764535820 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libedlib_1.2.7-6.dsc] I: copying [./libedlib_1.2.7.orig.tar.gz] I: copying [./libedlib_1.2.7-6.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Jul 13 18:52:01 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libedlib_1.2.7-6.dsc: no acceptable signature found dpkg-source: info: extracting libedlib in libedlib-1.2.7 dpkg-source: info: unpacking libedlib_1.2.7.orig.tar.gz dpkg-source: info: unpacking libedlib_1.2.7-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying cython3.patch dpkg-source: info: applying enable_shared_and_static.patch dpkg-source: info: applying really_exclude_readme.rst.patch dpkg-source: info: applying fix-package-version.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2818988/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='05f767dcc6be4f538af26358c0b7d3cc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2818988' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.32Kge3Ps/pbuilderrc_i6Dz --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.32Kge3Ps/b1 --logfile b1/build.log libedlib_1.2.7-6.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2818988/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, dh-sequence-python3, d-shlibs, rename, cython3, python3-all-dev, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19947 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on rename; however: Package rename is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} cython3{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} rename{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 96 newly installed, 0 to remove and 0 not upgraded. Need to get 56.8 MB of archives. After unpacking 225 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.7-1 [814 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.3-2 [105 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.7-1 [2162 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b2 [40.3 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.7-1 [1965 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.7-1 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-9 [97.2 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.30.5-1 [2223 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-1 [349 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b4 [300 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.63.0-1 [74.8 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.10.1-2 [352 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-2 [81.6 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.48.0-6 [148 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.30.5-1 [11.4 MB] Get: 57 http://deb.debian.org/debian unstable/main amd64 cython3 amd64 3.0.11+dfsg-1 [2449 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 d-shlibs all 0.107 [11.0 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 65 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 77 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.20.2-1 [10.3 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.2.0-1 [731 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20241024 [109 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.6.3-2 [157 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libpython3.12t64 amd64 3.12.7-1 [2149 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libpython3.12-dev amd64 3.12.7-1 [5122 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.12.6-1 [9952 B] Get: 91 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.12.6-1 [1064 B] Get: 92 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.12.6-1 [1040 B] Get: 93 http://deb.debian.org/debian unstable/main amd64 python3.12-dev amd64 3.12.7-1 [505 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.12.6-1 [26.1 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.12.6-1 [1068 B] Get: 96 http://deb.debian.org/debian unstable/main amd64 rename all 2.02-1 [21.8 kB] Fetched 56.8 MB in 0s (140 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19947 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.3-2_amd64.deb ... Unpacking libexpat1:amd64 (2.6.3-2) ... Selecting previously unselected package python3.12-minimal. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-1_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-1_amd64.deb ... Unpacking python3.12 (3.12.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up rename (2.02-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up libcom-err2:amd64 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Nov 30 20:50:50 UTC 2025. Universal Time is now: Sun Nov 30 20:50:50 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libexpat1-dev:amd64 (2.6.3-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libjsoncpp26:amd64 (1.9.6-2) ... Setting up libproc2-0:amd64 (2:4.0.4-6) ... Setting up autopoint (0.22.5-2) ... Setting up d-shlibs (0.107) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-6) ... Setting up netbase (6.4) ... Setting up cmake-data (3.30.5-1) ... Setting up librhash1:amd64 (1.4.5-1) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libarchive13t64:amd64 (3.7.4-1) ... Setting up libcurl4t64:amd64 (8.10.1-2) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:amd64 (1.3.0-3+b2) ... Setting up cmake (3.30.5-1) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-1) ... Setting up python3.12 (3.12.7-1) ... Setting up debhelper (13.20) ... Setting up libpython3.12t64:amd64 (3.12.7-1) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up libpython3.12-dev:amd64 (3.12.7-1) ... Setting up python3-zipp (3.20.2-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3.12-dev (3.12.7-1) ... Setting up cython3 (3.0.11+dfsg-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up libpython3-dev:amd64 (3.12.6-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.3.0-1) ... Setting up python3-all (3.12.6-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up libpython3-all-dev:amd64 (3.12.6-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.12.6-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-all-dev (3.12.6-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up dh-python (6.20241024) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libedlib-1.2.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libedlib_1.2.7-6_source.changes dpkg-buildpackage: info: source package libedlib dpkg-buildpackage: info: source version 1.2.7-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j42 clean make[1]: Entering directory '/build/reproducible-path/libedlib-1.2.7' rm -rf meson-build make[1]: Leaving directory '/build/reproducible-path/libedlib-1.2.7' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/libedlib-1.2.7' dh_auto_configure --buildsystem=cmake -- -DCMAKE_BUILD_TYPE=Release -DEDLIB_BUILD_EXAMPLES=False -DBUILD_TESTING=False -DEDLIB_OMIT_README_RST=1 -DBUILD_SHARED_LIBS=ON cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE=Release -DEDLIB_BUILD_EXAMPLES=False -DBUILD_TESTING=False -DEDLIB_OMIT_README_RST=1 -DBUILD_SHARED_LIBS=ON .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Setting warning flags -- Performing Test WOLD_STYLE_CAST -- Performing Test WOLD_STYLE_CAST - Success -- Performing Test WSHADOW -- Performing Test WSHADOW - Success -- Configuring done (2.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY EDLIB_OMIT_README_RST FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/libedlib-1.2.7' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/libedlib-1.2.7' dh_auto_build --buildsystem=cmake cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libedlib-1.2.7 -B/build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu' make -f CMakeFiles/edlib.dir/build.make CMakeFiles/edlib.dir/depend make -f CMakeFiles/edlib_static.dir/build.make CMakeFiles/edlib_static.dir/depend make[4]: Entering directory '/build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu' cd /build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libedlib-1.2.7 /build/reproducible-path/libedlib-1.2.7 /build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu /build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu /build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu/CMakeFiles/edlib.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu' cd /build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libedlib-1.2.7 /build/reproducible-path/libedlib-1.2.7 /build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu /build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu /build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu/CMakeFiles/edlib_static.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu' make -f CMakeFiles/edlib.dir/build.make CMakeFiles/edlib.dir/build make[4]: Leaving directory '/build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu' make -f CMakeFiles/edlib_static.dir/build.make CMakeFiles/edlib_static.dir/build make[4]: Entering directory '/build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu' [ 33%] Building CXX object CMakeFiles/edlib.dir/edlib/src/edlib.cpp.o [ 33%] Building CXX object CMakeFiles/edlib_static.dir/edlib/src/edlib.cpp.o /usr/bin/c++ -I/build/reproducible-path/libedlib-1.2.7/edlib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libedlib-1.2.7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wold-style-cast -Wshadow -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++14 -MD -MT CMakeFiles/edlib_static.dir/edlib/src/edlib.cpp.o -MF CMakeFiles/edlib_static.dir/edlib/src/edlib.cpp.o.d -o CMakeFiles/edlib_static.dir/edlib/src/edlib.cpp.o -c /build/reproducible-path/libedlib-1.2.7/edlib/src/edlib.cpp /usr/bin/c++ -DDLIB_BUILD -DEDLIB_SHARED -Dedlib_EXPORTS -I/build/reproducible-path/libedlib-1.2.7/edlib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libedlib-1.2.7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wold-style-cast -Wshadow -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++14 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/edlib.dir/edlib/src/edlib.cpp.o -MF CMakeFiles/edlib.dir/edlib/src/edlib.cpp.o.d -o CMakeFiles/edlib.dir/edlib/src/edlib.cpp.o -c /build/reproducible-path/libedlib-1.2.7/edlib/src/edlib.cpp [ 50%] Linking CXX static library lib/libedlib_static.a /usr/bin/cmake -P CMakeFiles/edlib_static.dir/cmake_clean_target.cmake [ 66%] Linking CXX shared library lib/libedlib.so /usr/bin/cmake -E cmake_link_script CMakeFiles/edlib.dir/link.txt --verbose=1 /usr/bin/cmake -E cmake_link_script CMakeFiles/edlib_static.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libedlib-1.2.7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wold-style-cast -Wshadow -Wall -Wextra -pedantic -O3 -DNDEBUG -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libedlib.so.1 -o lib/libedlib.so.1.2.7 CMakeFiles/edlib.dir/edlib/src/edlib.cpp.o /usr/bin/ar qc lib/libedlib_static.a CMakeFiles/edlib_static.dir/edlib/src/edlib.cpp.o /usr/bin/ranlib lib/libedlib_static.a make[4]: Leaving directory '/build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu' [ 66%] Built target edlib_static make -f CMakeFiles/edlib-aligner.dir/build.make CMakeFiles/edlib-aligner.dir/depend make[4]: Entering directory '/build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu' cd /build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libedlib-1.2.7 /build/reproducible-path/libedlib-1.2.7 /build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu /build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu /build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu/CMakeFiles/edlib-aligner.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu' make -f CMakeFiles/edlib-aligner.dir/build.make CMakeFiles/edlib-aligner.dir/build make[4]: Entering directory '/build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu' [ 83%] Building CXX object CMakeFiles/edlib-aligner.dir/apps/aligner/aligner.cpp.o /usr/bin/c++ -I/build/reproducible-path/libedlib-1.2.7/edlib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libedlib-1.2.7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wold-style-cast -Wshadow -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++14 -MD -MT CMakeFiles/edlib-aligner.dir/apps/aligner/aligner.cpp.o -MF CMakeFiles/edlib-aligner.dir/apps/aligner/aligner.cpp.o.d -o CMakeFiles/edlib-aligner.dir/apps/aligner/aligner.cpp.o -c /build/reproducible-path/libedlib-1.2.7/apps/aligner/aligner.cpp [100%] Linking CXX executable bin/edlib-aligner /usr/bin/cmake -E cmake_link_script CMakeFiles/edlib-aligner.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libedlib-1.2.7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wold-style-cast -Wshadow -Wall -Wextra -pedantic -O3 -DNDEBUG -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/edlib-aligner.dir/apps/aligner/aligner.cpp.o" -o bin/edlib-aligner lib/libedlib_static.a /usr/bin/cmake -E cmake_symlink_library lib/libedlib.so.1.2.7 lib/libedlib.so.1 lib/libedlib.so make[4]: Leaving directory '/build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu' [100%] Built target edlib make[4]: Leaving directory '/build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu' [100%] Built target edlib-aligner make[3]: Leaving directory '/build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu' # /usr/bin/make --directory=bindings/python EDLIB_OMIT_README_RST=1 /usr/bin/make --directory=bindings/python edlib pyedlib.bycython.cpp make[2]: Entering directory '/build/reproducible-path/libedlib-1.2.7/bindings/python' # create a clean (maybe updated) copy of edlib src rm -rf edlib && cp -r ../../edlib . cython3 --cplus edlib.pyx -o edlib.bycython.cpp /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/libedlib-1.2.7/bindings/python/edlib.pyx tree = Parsing.p_module(s, pxd, full_module_name) make[2]: Leaving directory '/build/reproducible-path/libedlib-1.2.7/bindings/python' EDLIB_OMIT_README_RST=1 dh_auto_build --buildsystem=pybuild -- --dir bindings/python I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_ext building 'edlib' extension creating build/temp.linux-x86_64-cpython-312 creating build/temp.linux-x86_64-cpython-312/edlib/src x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libedlib-1.2.7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iedlib/include -I/usr/include/python3.12 -c edlib.bycython.cpp -o build/temp.linux-x86_64-cpython-312/edlib.bycython.o -O3 -std=c++11 x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libedlib-1.2.7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iedlib/include -I/usr/include/python3.12 -c edlib/src/edlib.cpp -o build/temp.linux-x86_64-cpython-312/edlib/src/edlib.o -O3 -std=c++11 x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libedlib-1.2.7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/libedlib-1.2.7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/edlib.bycython.o build/temp.linux-x86_64-cpython-312/edlib/src/edlib.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/libedlib-1.2.7/.pybuild/cpython3_3.12_edlib/build/edlib.cpython-312-x86_64-linux-gnu.so make[1]: Leaving directory '/build/reproducible-path/libedlib-1.2.7' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libedlib-1.2.7' `find . -name edlib-aligner -type f -executable` -p apps/aligner/test_data/query.fasta apps/aligner/test_data/target.fasta Using NW alignment mode. Reading queries... Read 1 queries, 110 residues total. Reading target fasta file... Read target, 109 residues. Comparing queries to target... Query #0 (110 residues): score = 17 T: MMEEERFAASADEIFHVTQEVC-RTASELTESESRNVIVDELFCVGVTEM (0 - 48) ||||||| | |||||||||| ||||||||||||||||||||||||||| Q: MMEEERFKA---EIFHVTQEVCNRTASELTESESRNVIVDELFCVGVTEM (0 - 46) T: VAEQIRVLAKDIEA---HA-RKTVQPQDVLDDLCCRRNEGL-EIINNF-K (49 - 92) | |||||||||||| || |||||||||| ||||||||| |||||| | Q: VWEQIRVLAKDIEAFAEHAGRKTVQPQDVL--LCCRRNEGLYEIINNFHK (47 - 94) T: AESIKSKKKKKE-STTB (93 - 108) ||||||||||| ||| Q: -ESIKSKKKKKENSTT- (94 - 109) Cpu time of searching: 0.000087 `find . -name runTests` make[1]: Leaving directory '/build/reproducible-path/libedlib-1.2.7' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/libedlib-1.2.7' dh_auto_install --buildsystem=cmake cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/libedlib-1.2.7/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libedlib-1.2.7 -B/build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/libedlib-1.2.7/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/edlib-1.pc -- Installing: /build/reproducible-path/libedlib-1.2.7/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/edlib/edlib-config.cmake -- Installing: /build/reproducible-path/libedlib-1.2.7/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/edlib/edlib-config-version.cmake -- Installing: /build/reproducible-path/libedlib-1.2.7/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/edlib/edlib-targets.cmake -- Installing: /build/reproducible-path/libedlib-1.2.7/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/edlib/edlib-targets-release.cmake -- Installing: /build/reproducible-path/libedlib-1.2.7/debian/tmp/usr/lib/x86_64-linux-gnu/libedlib.so.1.2.7 -- Installing: /build/reproducible-path/libedlib-1.2.7/debian/tmp/usr/lib/x86_64-linux-gnu/libedlib.so.1 -- Installing: /build/reproducible-path/libedlib-1.2.7/debian/tmp/usr/lib/x86_64-linux-gnu/libedlib.so -- Installing: /build/reproducible-path/libedlib-1.2.7/debian/tmp/usr/lib/x86_64-linux-gnu/libedlib_static.a -- Installing: /build/reproducible-path/libedlib-1.2.7/debian/tmp/usr/include/edlib.h make[2]: Leaving directory '/build/reproducible-path/libedlib-1.2.7/obj-x86_64-linux-gnu' dh_auto_install --buildsystem=pybuild -- --dir bindings/python I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/libedlib-1.2.7/debian/python3-edlib running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_ext running install_lib creating /build/reproducible-path/libedlib-1.2.7/debian/python3-edlib/usr/lib/python3.12/dist-packages copying /build/reproducible-path/libedlib-1.2.7/.pybuild/cpython3_3.12_edlib/build/edlib.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/libedlib-1.2.7/debian/python3-edlib/usr/lib/python3.12/dist-packages running install_egg_info running egg_info creating edlib.egg-info writing edlib.egg-info/PKG-INFO writing dependency_links to edlib.egg-info/dependency_links.txt writing top-level names to edlib.egg-info/top_level.txt writing manifest file 'edlib.egg-info/SOURCES.txt' reading manifest file 'edlib.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'edlib.egg-info/SOURCES.txt' Copying edlib.egg-info to /build/reproducible-path/libedlib-1.2.7/debian/python3-edlib/usr/lib/python3.12/dist-packages/edlib-1.3.8.post2.egg-info Skipping SOURCES.txt running install_scripts make[1]: Leaving directory '/build/reproducible-path/libedlib-1.2.7' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libedlib-1.2.7' dh_install file-rename 's/_static\.a/.a/' `find debian -name libedlib_static.a` d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/x86_64-linux-gnu \ --movedev debian/tmp/usr/lib/*/pkgconfig usr/lib/x86_64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libedlib-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libedlib1/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libedlib.a debian/libedlib-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libedlib.so debian/libedlib-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libedlib-1.2.7/debian/tmp/usr/lib/x86_64-linux-gnu/libedlib.so.1 debian/libedlib1/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libedlib-1.2.7/debian/tmp/usr/lib/x86_64-linux-gnu/libedlib.so.1.2.7 debian/libedlib1/usr/lib/x86_64-linux-gnu PKGDEV=libedlib-dev PKGSHL=libedlib1 install -d -m 755 debian/libedlib-dev/usr/include mv debian/tmp/usr/include/edlib.h debian/libedlib-dev/usr/include install -d -m 755 debian/libedlib-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/cmake debian/libedlib-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libedlib-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig debian/libedlib-dev/usr/lib/x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/libedlib-1.2.7' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_python3 dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: warning: debian/libedlib1/DEBIAN/symbols doesn't match completely debian/libedlib1.symbols --- debian/libedlib1.symbols (libedlib1_1.2.7-6_amd64) +++ dpkg-gensymbols02lxNu 2025-11-30 08:51:18.055005897 -1200 @@ -1,8 +1,8 @@ libedlib.so.1 libedlib1 #MINVER# * Build-Depends-Package: libedlib-dev - (optional)_ZNSt6vectorIcSaIcEE17_M_realloc_insertIJRKcEEEvN9__gnu_cxx17__normal_iteratorIPcS1_EEDpOT_@Base 1.2.4 - (optional)_ZNSt6vectorIcSaIcEE17_M_realloc_insertIJcEEEvN9__gnu_cxx17__normal_iteratorIPcS1_EEDpOT_@Base 1.2.4 - (optional)_ZNSt6vectorIiSaIiEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base 1.2.3 +#MISSING: 1.2.7-6# (optional)_ZNSt6vectorIcSaIcEE17_M_realloc_insertIJRKcEEEvN9__gnu_cxx17__normal_iteratorIPcS1_EEDpOT_@Base 1.2.4 +#MISSING: 1.2.7-6# (optional)_ZNSt6vectorIcSaIcEE17_M_realloc_insertIJcEEEvN9__gnu_cxx17__normal_iteratorIPcS1_EEDpOT_@Base 1.2.4 +#MISSING: 1.2.7-6# (optional)_ZNSt6vectorIiSaIiEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base 1.2.3 edlibAlign@Base 1.2.3 edlibAlignmentToCigar@Base 1.2.3 edlibDefaultAlignConfig@Base 1.2.3 dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libedlib-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'libedlib1' in '../libedlib1_1.2.7-6_amd64.deb'. dpkg-deb: building package 'libedlib1-dbgsym' in '../libedlib1-dbgsym_1.2.7-6_amd64.deb'. dpkg-deb: building package 'libedlib-dev' in '../libedlib-dev_1.2.7-6_amd64.deb'. dpkg-deb: building package 'edlib-aligner' in '../edlib-aligner_1.2.7-6_amd64.deb'. dpkg-deb: building package 'edlib-aligner-dbgsym' in '../edlib-aligner-dbgsym_1.2.7-6_amd64.deb'. dpkg-deb: building package 'python3-edlib' in '../python3-edlib_1.2.7-6_amd64.deb'. dpkg-deb: building package 'python3-edlib-dbgsym' in '../python3-edlib-dbgsym_1.2.7-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libedlib_1.2.7-6_amd64.buildinfo dpkg-genchanges --build=binary -O../libedlib_1.2.7-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2818988 and its subdirectories I: Current time: Sun Nov 30 08:51:20 -12 2025 I: pbuilder-time-stamp: 1764535881 Mon Oct 28 14:28:24 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Mon Oct 28 14:28:24 UTC 2024 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Mon Oct 28 14:35:03 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Mon Oct 28 14:35:04 UTC 2024 I: libedlib_1.2.7-6_amd64.changes: Format: 1.8 Date: Sat, 13 Jul 2024 20:49:11 +0200 Source: libedlib Binary: edlib-aligner edlib-aligner-dbgsym libedlib-dev libedlib1 libedlib1-dbgsym python3-edlib python3-edlib-dbgsym Architecture: amd64 Version: 1.2.7-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: edlib-aligner - edlib sequence alignment tool using edit distance libedlib-dev - library for sequence alignment using edit distance (devel) libedlib1 - library for sequence alignment using edit distance python3-edlib - library for sequence alignment using edit distance (Python3 modul Closes: 1015484 1075164 Changes: libedlib (1.2.7-6) unstable; urgency=medium . * d/libedlib1.symbols: mark symbols leaked by the compiler as optional. (Closes: #1015484, #1075164) * d/rules: always run LTO builds. * d/control: add myself to uploaders. * d/control: declare compliance to standards version 4.7.0. Checksums-Sha1: 7179f9a7503e10bf7e23c39c292134de366db09e 115112 edlib-aligner-dbgsym_1.2.7-6_amd64.deb 55d2b270ddcff8ae2e53f1d9b445f5c7d2800256 24644 edlib-aligner_1.2.7-6_amd64.deb 36bf903c6a02ac5311c778c1cbc7df8a550f402a 22968 libedlib-dev_1.2.7-6_amd64.deb c6970ea6db4deb41e68dce846197386e4b9e44ef 77908 libedlib1-dbgsym_1.2.7-6_amd64.deb 6f77c2497d16d70215d04ed3ff0a36d2a5f61946 17828 libedlib1_1.2.7-6_amd64.deb ded54fa2fceec5e63d82874874f51aea7ec9f478 8959 libedlib_1.2.7-6_amd64.buildinfo 68dc317d7ba985f2bded4f0fe694c119edf09135 324096 python3-edlib-dbgsym_1.2.7-6_amd64.deb 9db68180515ffd39a3a3ae4625cb53fa6318cd00 68332 python3-edlib_1.2.7-6_amd64.deb Checksums-Sha256: df36dd329e0890b719518043b2929511b45d6d603bafcdd2f7a45d73a2d0409c 115112 edlib-aligner-dbgsym_1.2.7-6_amd64.deb f09cd804d034cde1e1207d97eb8135918709ec829ec86240c347d296f99949e8 24644 edlib-aligner_1.2.7-6_amd64.deb ea175ea1c1e46241664bab3fa9bd3104811b5e671578710f0a59f92d74d4a1e4 22968 libedlib-dev_1.2.7-6_amd64.deb 4d0212c78e795b3eee0e829bd90a2929b93de339434bd0d912b07846b316bb44 77908 libedlib1-dbgsym_1.2.7-6_amd64.deb 231cc1ed5b717cc0c695a14a4c41353f3a3305f0dd2cc51d249973d7dd2f8aa5 17828 libedlib1_1.2.7-6_amd64.deb 4517740bb5cb7dbeb8f22d19030fdf178ac94abead35429f7038ffe1886abcc4 8959 libedlib_1.2.7-6_amd64.buildinfo bb47404cff8184d95108d31febec64d0baf382f3f868227cf06380a97f77adfb 324096 python3-edlib-dbgsym_1.2.7-6_amd64.deb 024dcb3caf9f92f331c729338b4c5d88bc2faf6ae1811d24fb9dba2f4aa36181 68332 python3-edlib_1.2.7-6_amd64.deb Files: f5d406174f04f0d99fe9fadfa64f0f08 115112 debug optional edlib-aligner-dbgsym_1.2.7-6_amd64.deb 62305c3ba5313c902c318a9bb021a3cf 24644 science optional edlib-aligner_1.2.7-6_amd64.deb 63073a03f51376848fc41cd58493d12d 22968 libdevel optional libedlib-dev_1.2.7-6_amd64.deb 8afbf9bcbf4c1f3908bc67dcb731406c 77908 debug optional libedlib1-dbgsym_1.2.7-6_amd64.deb 2ef846156a9d7d39e493e6f659fe7970 17828 libs optional libedlib1_1.2.7-6_amd64.deb 12bea15397d82d4865bf5d5be9cf352f 8959 science optional libedlib_1.2.7-6_amd64.buildinfo 6f11d49041719403e9d6714c0e463a78 324096 debug optional python3-edlib-dbgsym_1.2.7-6_amd64.deb 4c19ca8a0b908e8803e178d4a4bbb4c3 68332 python optional python3-edlib_1.2.7-6_amd64.deb Mon Oct 28 14:35:05 UTC 2024 I: diffoscope 282 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_32-24341.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.32Kge3Ps/libedlib_1.2.7-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.32Kge3Ps/libedlib_1.2.7-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.32Kge3Ps/libedlib_1.2.7-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.32Kge3Ps/b1/libedlib_1.2.7-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.32Kge3Ps/b2/libedlib_1.2.7-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.451s) 0.451s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.029s) 0.029s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 835ms CPU time consumed: 835ms Mon Oct 28 14:35:07 UTC 2024 I: diffoscope 282 found no differences in the changes files, and a .buildinfo file also exists. Mon Oct 28 14:35:07 UTC 2024 I: libedlib from unstable built successfully and reproducibly on amd64. Mon Oct 28 14:35:08 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Oct 28 14:35:08 UTC 2024 I: Submitting 12K b1/libedlib_1.2.7-6_amd64.buildinfo.asc Mon Oct 28 14:35:09 UTC 2024 I: Submitting 12K b2/libedlib_1.2.7-6_amd64.buildinfo.asc Mon Oct 28 14:35:10 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Oct 28 14:35:10 UTC 2024 I: Done submitting .buildinfo files. Mon Oct 28 14:35:10 UTC 2024 I: Removing signed libedlib_1.2.7-6_amd64.buildinfo.asc files: removed './b1/libedlib_1.2.7-6_amd64.buildinfo.asc' removed './b2/libedlib_1.2.7-6_amd64.buildinfo.asc'