Tue Jan 14 02:24:42 UTC 2025 I: starting to build libbpp-raa/unstable/amd64 on jenkins on '2025-01-14 02:24' Tue Jan 14 02:24:42 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_5/28731/console.log Tue Jan 14 02:24:42 UTC 2025 I: Downloading source for unstable/libbpp-raa=2.4.1-9 --2025-01-14 02:24:43-- http://deb.debian.org/debian/pool/main/libb/libbpp-raa/libbpp-raa_2.4.1-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2171 (2.1K) [text/prs.lines.tag] Saving to: ‘libbpp-raa_2.4.1-9.dsc’ 0K .. 100% 328M=0s 2025-01-14 02:24:43 (328 MB/s) - ‘libbpp-raa_2.4.1-9.dsc’ saved [2171/2171] Tue Jan 14 02:24:43 UTC 2025 I: libbpp-raa_2.4.1-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libbpp-raa Binary: libbpp-raa-dev, libbpp-raa4t64 Architecture: any Version: 2.4.1-9 Maintainer: Debian Med Packaging Team Uploaders: Julien Dutheil , Andreas Tille Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-raa Vcs-Git: https://salsa.debian.org/med-team/libbpp-raa.git Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), zlib1g-dev, libbpp-seq-dev Package-List: libbpp-raa-dev deb libdevel optional arch=any libbpp-raa4t64 deb libs optional arch=any Checksums-Sha1: 31eefa01d441b72db441e1f5e1fb0e07acc24717 83211 libbpp-raa_2.4.1.orig.tar.gz 1aa18f9ba40b5eb5932103b532d026bf172909f0 10836 libbpp-raa_2.4.1-9.debian.tar.xz Checksums-Sha256: 21ed87b5c0c80f5b1632493127b30a77ae92ac0853985c048f31bed5fd0fb301 83211 libbpp-raa_2.4.1.orig.tar.gz 87cd6c6b71211228986f5c5a8d19d13f4c3fd46b77a94196ec79b6b72a5cf408 10836 libbpp-raa_2.4.1-9.debian.tar.xz Files: 6ccf1fcd43852bb6d20959b0308fb754 83211 libbpp-raa_2.4.1.orig.tar.gz 0efe19f100cc6e1174c69ac3bc6d8852 10836 libbpp-raa_2.4.1-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmaWcpcRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFYgg/9E366q6ApQVAP30mXCWqj6wESEwHjm58X H9SiDe/wVLHBT2z8U4kpa5bZhbouNFyCmTlxOJiGRML6afYBxwY95C+/FZ+RMjXP 5cm74ZdngqtLxg//MVgDRrvxBBK4nFp+5/uhtX0fD9NpW0jRgLDTVSXmaJQ16dfl LB6KILk7TtFubmuUww4MIgnvK3OgwXlUFMqOb3704rLY8VrL9Ktt+CCypNDCfHsV FKqX1/dywFYPyeMQGGV44kq9kYBV4JXxQB1JvGEfH41ushLzyH3K0MVaIXLvTeF0 f+u6JuuW5atBaW7gYTuzDx7FLkalrv3txn09bUIAqy9VaRJ5Ul39Qge4poFdxNv8 lmmmgegyT1QyPFFv0oKJsTL6oeCuXXOCNkiWpzoirV5aGBLVPfDb8CqSqn9tF7rw v0hbcLubd9QUfc6To5TLHmMgGR/vDYvlv5BnZNQdzV74DjKi0ib5B3akjTTZgK5I jjtnnwNxq0nnMuFM7vhX2TOz3wrmSfNKRA/PJUbIkivh1Pb1UvbNe52cSaVUaYy2 CUN6LiVLvr+Yb6dQAtmoEIVG6GnStz5V8LmsMOc4M4NBq4jjAXYfkd1SIoCpEUJp vH/qY9NNHnIbwiXEBtd2uHs2mfQJVBFti7SohvH+XX8Ev1Ght1IuRDwYuj2UzvCx XBt6V6jjCT0= =CdQ8 -----END PGP SIGNATURE----- Tue Jan 14 02:24:43 UTC 2025 I: Checking whether the package is not for us Tue Jan 14 02:24:43 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net. Tue Jan 14 02:24:43 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Tue Jan 14 02:27:36 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jan 13 14:24:45 -12 2025 I: pbuilder-time-stamp: 1736821485 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbpp-raa_2.4.1-9.dsc] I: copying [./libbpp-raa_2.4.1.orig.tar.gz] I: copying [./libbpp-raa_2.4.1-9.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libbpp-raa_2.4.1-9.dsc: unsupported subcommand dpkg-source: info: extracting libbpp-raa in libbpp-raa-2.4.1 dpkg-source: info: unpacking libbpp-raa_2.4.1.orig.tar.gz dpkg-source: info: unpacking libbpp-raa_2.4.1-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/367819/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='52f6aa46f2af40938d9a6e9142006b63' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='367819' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Ssd7jesu/pbuilderrc_CsFn --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Ssd7jesu/b1 --logfile b1/build.log libbpp-raa_2.4.1-9.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-29-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.123-1 (2025-01-02) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/367819/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), zlib1g-dev, libbpp-seq-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19849 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs (>= 0.106~); however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbpp-seq-dev; however: Package libbpp-seq-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbpp-core-dev{a} libbpp-core4t64{a} libbpp-seq-dev{a} libbpp-seq12t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 65 newly installed, 0 to remove and 0 not upgraded. Need to get 44.1 MB of archives. After unpacking 171 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-4 [200 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.3-1 [92.1 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-4 [723 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.3-1 [2268 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 27 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.19.0-3+b3 [49.5 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.8-2 [1454 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.19+dfsg-1 [187 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.11.1-1 [351 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.3-1 [11.9 MB] Get: 48 http://deb.debian.org/debian unstable/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.23 [90.6 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-2 [539 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 55 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-4 [1600 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.23 [919 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libbpp-core4t64 amd64 2.4.1-13+b1 [629 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libbpp-core-dev amd64 2.4.1-13+b1 [967 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libbpp-seq12t64 amd64 2.4.1-13 [510 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libbpp-seq-dev amd64 2.4.1-13 [745 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 44.1 MB in 3s (16.2 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19849 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-6_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-6_amd64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-4_amd64.deb ... Unpacking gettext-base (0.22.5-4) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbpp-raa-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbpp-raa_2.4.1-9_source.changes dpkg-buildpackage: info: source package libbpp-raa dpkg-buildpackage: info: source version 2.4.1-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- Found ZLIB: 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Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu' [ 5%] Building CXX object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA.cpp.o [ 11%] Building CXX object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o [ 16%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA.cpp.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA.cpp.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RAA.cpp [ 22%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o [ 27%] Building CXX object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RAA.cpp cd /build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RaaSpeciesTree.cpp [ 33%] Building CXX object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o [ 38%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RAA_acnuc.c [ 44%] Building CXX object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RaaSpeciesTree.cpp [ 50%] Building CXX object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RaaList.cpp [ 55%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o [ 61%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RaaList.cpp cd /build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c [ 66%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c [ 72%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o [ 77%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/misc_acnuc.c cd /build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/misc_acnuc.c cd /build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/zsockr.c cd /build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RAA_acnuc.c [ 83%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o [ 88%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/parser.c cd /build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/parser.c cd /build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/zsockr.c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:214:34: warning: argument 1 of type 'uint32[4]' {aka 'unsigned int[4]'} with mismatched bound [-Warray-parameter=] 214 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~^~~~~~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:48:35: note: previously declared as 'uint32 *' {aka 'unsigned int *'} 48 | static void MD5_Transform(uint32* buf, uint32 const* in); | ~~~~~~~~^~~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:214:55: warning: argument 2 of type 'const uint32[16]' {aka 'const unsigned int[16]'} with mismatched bound [-Warray-parameter=] 214 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:48:54: note: previously declared as 'const uint32 *' {aka 'const unsigned int *'} 48 | static void MD5_Transform(uint32* buf, uint32 const* in); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:214:34: warning: argument 1 of type 'uint32[4]' {aka 'unsigned int[4]'} with mismatched bound [-Warray-parameter=] 214 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~^~~~~~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:48:35: note: previously declared as 'uint32 *' {aka 'unsigned int *'} 48 | static void MD5_Transform(uint32* buf, uint32 const* in); | ~~~~~~~~^~~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:214:55: warning: argument 2 of type 'const uint32[16]' {aka 'const unsigned int[16]'} with mismatched bound [-Warray-parameter=] 214 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:48:54: note: previously declared as 'const uint32 *' {aka 'const unsigned int *'} 48 | static void MD5_Transform(uint32* buf, uint32 const* in); | ~~~~~~~~~~~~~~^~ [ 94%] Linking CXX static library libbpp-raa.a cd /build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bpp-raa-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-raa-static.dir/link.txt --verbose=1 /usr/bin/ar qc libbpp-raa.a "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA.cpp.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o" /usr/bin/ranlib libbpp-raa.a make[3]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu' [ 94%] Built target bpp-raa-static [100%] Linking CXX shared library libbpp-raa.so cd /build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-raa-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,--dependency-file=CMakeFiles/bpp-raa-shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-raa.so.4 -o libbpp-raa.so.4.0.0 "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o" /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 cd /build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbpp-raa.so.4.0.0 libbpp-raa.so.4 libbpp-raa.so make[3]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu' [100%] Built target bpp-raa-shared make[2]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/libbpp-raa-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libbpp-raa-2.4.1 -B/build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-raa/bpp-raa-config.cmake -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-raa/bpp-raa-config-version.cmake -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-raa.a -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-raa.so.4.0.0 -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-raa.so.4 -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-raa.so -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RAA.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RaaSeqAttributes.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RAA_acnuc.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/parser.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RaaList.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RaaSpeciesTree.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-raa/bpp-raa-targets.cmake -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-raa/bpp-raa-targets-none.cmake make[1]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1' dh_install d-shlibmove --commit \ --t64 \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/x86_64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-seq-dev package exists. --> zlib1g-dev package exists. set -e install -d -m 755 debian/libbpp-raa-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libbpp-raa4t64/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-raa.a debian/libbpp-raa-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-raa.so debian/libbpp-raa-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-raa.so.4 debian/libbpp-raa4t64/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-raa.so.4.0.0 debian/libbpp-raa4t64/usr/lib/x86_64-linux-gnu PKGDEV=libbpp-raa-dev PKGSHL=libbpp-raa4t64 install -d -m 755 debian/libbpp-raa-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-raa-dev/usr/include install -d -m 755 debian/libbpp-raa-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/cmake debian/libbpp-raa-dev/usr/lib/x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1' dh_installdocs dh_installchangelogs dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbpp-raa4t64-dbgsym' in '../libbpp-raa4t64-dbgsym_2.4.1-9_amd64.deb'. dpkg-deb: building package 'libbpp-raa4t64' in '../libbpp-raa4t64_2.4.1-9_amd64.deb'. dpkg-deb: building package 'libbpp-raa-dev' in '../libbpp-raa-dev_2.4.1-9_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libbpp-raa_2.4.1-9_amd64.buildinfo dpkg-genchanges --build=binary -O../libbpp-raa_2.4.1-9_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/367819 and its subdirectories I: Current time: Mon Jan 13 14:27:35 -12 2025 I: pbuilder-time-stamp: 1736821655 Tue Jan 14 02:27:37 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Tue Jan 14 02:27:37 UTC 2025 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Tue Jan 14 02:28:17 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Tue Jan 14 02:28:17 UTC 2025 I: libbpp-raa_2.4.1-9_amd64.changes: Format: 1.8 Date: Tue, 16 Jul 2024 15:05:05 +0200 Source: libbpp-raa Binary: libbpp-raa-dev libbpp-raa4t64 libbpp-raa4t64-dbgsym Architecture: amd64 Version: 2.4.1-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libbpp-raa-dev - Bio++ Remote Acnuc Access library development files libbpp-raa4t64 - Bio++ Remote Acnuc Access library Closes: 1075152 Changes: libbpp-raa (2.4.1-9) unstable; urgency=medium . * Since every GCC version bump ends up in a bug caused by the need to update symbols files we stop providing symbols for this library Closes: #1075152 * lintian-override for no-symbols-control-file * Standards-Version: 4.7.0 Checksums-Sha1: 478381f7b436e1f3c520166dd706b5c97e83db49 67064 libbpp-raa-dev_2.4.1-9_amd64.deb 2435e3d76f1d0a34ec5255fce5b446e2f68ae5f4 239476 libbpp-raa4t64-dbgsym_2.4.1-9_amd64.deb 2c062ad3fe29da108cd5dc0a2525c53e5db06fe3 52724 libbpp-raa4t64_2.4.1-9_amd64.deb f9d87dd6f4084dbad700014a0e24b282c4572936 6715 libbpp-raa_2.4.1-9_amd64.buildinfo Checksums-Sha256: 8969af61db73b82b63f76641193c1bb0ca04528a0804c72b7bea4f85ed27f4a8 67064 libbpp-raa-dev_2.4.1-9_amd64.deb efcdf7d9cbe7ddb68fa54526a811187679bef9182a0c85938d8cfad581adb75a 239476 libbpp-raa4t64-dbgsym_2.4.1-9_amd64.deb a6a429c1127b61630a42f73bc1bc5c675dff99627241a6b278389d918835f515 52724 libbpp-raa4t64_2.4.1-9_amd64.deb 817235e6abd117fa595099a33695f21a4d61fb5ca3e586e5b73eee02728ad1e8 6715 libbpp-raa_2.4.1-9_amd64.buildinfo Files: 252d1338438e0bfcde6fab7da9e4d968 67064 libdevel optional libbpp-raa-dev_2.4.1-9_amd64.deb 844cec7a8159159fc13f8dd182478857 239476 debug optional libbpp-raa4t64-dbgsym_2.4.1-9_amd64.deb 03110664329b024b6de5a79738d03e08 52724 libs optional libbpp-raa4t64_2.4.1-9_amd64.deb 4af105d363115809746d5f1b786ebb1a 6715 science optional libbpp-raa_2.4.1-9_amd64.buildinfo Tue Jan 14 02:28:18 UTC 2025 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_5-28731.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Ssd7jesu/libbpp-raa_2.4.1-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Ssd7jesu/libbpp-raa_2.4.1-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Ssd7jesu/libbpp-raa_2.4.1-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Ssd7jesu/b1/libbpp-raa_2.4.1-9_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Ssd7jesu/b2/libbpp-raa_2.4.1-9_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.378s) 0.378s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.023s) 0.023s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 696ms CPU time consumed: 697ms Tue Jan 14 02:28:19 UTC 2025 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Tue Jan 14 02:28:19 UTC 2025 I: libbpp-raa from unstable built successfully and reproducibly on amd64. Tue Jan 14 02:28:20 UTC 2025 I: Submitting .buildinfo files to external archives: Tue Jan 14 02:28:20 UTC 2025 I: Submitting 8.0K b1/libbpp-raa_2.4.1-9_amd64.buildinfo.asc Tue Jan 14 02:28:21 UTC 2025 I: Submitting 8.0K b2/libbpp-raa_2.4.1-9_amd64.buildinfo.asc Tue Jan 14 02:28:22 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Jan 14 02:28:22 UTC 2025 I: Done submitting .buildinfo files. Tue Jan 14 02:28:22 UTC 2025 I: Removing signed libbpp-raa_2.4.1-9_amd64.buildinfo.asc files: removed './b1/libbpp-raa_2.4.1-9_amd64.buildinfo.asc' removed './b2/libbpp-raa_2.4.1-9_amd64.buildinfo.asc'