Tue Dec 24 02:15:13 UTC 2024 I: starting to build libbio-das-lite-perl/unstable/amd64 on jenkins on '2024-12-24 02:14' Tue Dec 24 02:15:13 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_35/40603/console.log Tue Dec 24 02:15:13 UTC 2024 I: Downloading source for unstable/libbio-das-lite-perl=2.11-9 --2024-12-24 02:15:13-- http://deb.debian.org/debian/pool/main/libb/libbio-das-lite-perl/libbio-das-lite-perl_2.11-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2394 (2.3K) [text/prs.lines.tag] Saving to: ‘libbio-das-lite-perl_2.11-9.dsc’ 0K .. 100% 258M=0s 2024-12-24 02:15:13 (258 MB/s) - ‘libbio-das-lite-perl_2.11-9.dsc’ saved [2394/2394] Tue Dec 24 02:15:13 UTC 2024 I: libbio-das-lite-perl_2.11-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-das-lite-perl Binary: libbio-das-lite-perl Architecture: all Version: 2.11-9 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Uploaders: Andreas Tille <tille@debian.org> Homepage: https://metacpan.org/dist/Bio-Das-Lite Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/libbio-das-lite-perl Vcs-Git: https://salsa.debian.org/med-team/libbio-das-lite-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13), perl, libmodule-build-perl Build-Depends-Indep: libio-stringy-perl, libreadonly-perl, libwww-curl-perl, libwww-perl, libtest-pod-coverage-perl, libtest-distribution-perl Package-List: libbio-das-lite-perl deb perl optional arch=all Checksums-Sha1: 99442a9d30c6dcc42d109df378635b8b7a6dbd40 100641 libbio-das-lite-perl_2.11.orig.tar.gz 5e6cd8a5cc6121e397cc754b94f4842286183634 3644 libbio-das-lite-perl_2.11-9.debian.tar.xz Checksums-Sha256: 4c06f8a2b834d7762a0ed5f8f4e37fa05d259691652f8c83b47b4eee2781e274 100641 libbio-das-lite-perl_2.11.orig.tar.gz e97fd82ec53564ad8527637a5f2934b94b5ab2421e7790f9bb7ab78f15f58a75 3644 libbio-das-lite-perl_2.11-9.debian.tar.xz Files: cae801b844c9ba4f46bcdc237a50bf46 100641 libbio-das-lite-perl_2.11.orig.tar.gz 29d2e45264c9d58878e52d66ce2c5183 3644 libbio-das-lite-perl_2.11-9.debian.tar.xz Dgit: a3c206874d3bd0357ebde1790fbf88555c51e8ce debian archive/debian/2.11-9 https://git.dgit.debian.org/libbio-das-lite-perl -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmdMT+EUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrs+A/+NvN+bBU1l/Om06UCdL70d+O2PgiR NMKqSyBrHevHuKyiEMBbKqRkA8hIjVg30lnfD123aPVjorKTnOsDvkoE4f9dttDU 9UwRtDUsCv6XD8uE7YWo+Mf5h1NWkQcwsouF8mN/zF/9C1OHz7wU8+rGfXdsQAQC Cdn4WUUWdKzssUfpvs0kw9YNFxOyBWkciIKvC1rq3zzixFC65asBFVOQYbIf4IoR 01zl4vwdko3SKUuagyoWPtkYBC/+1BJqGTy+1lrXG98NNeLGtvG9W1qZImLfE5oY RNBkgR0EvLXeFDm87pinoN6izEswbFy1XjkAXxdxxVjWCV+xhXslz3a/s/rqhX4p pkhYaLBF7bGG7qDqzC0aAda6DB/w9H0KAk1RICJmXACUTYUDAmq89q0vGlvhg+lS 7LU+vh/ZX63j9PAptCrrv0bygys6QyWPKezPOKVtKempvXTjjvvh+dSAsiz53XVT BIS8nCYubr4Ox+YGzAT19onYXhGjf7YbU2zQvN4+kkxqSb0qx5lnzCp07QU1v0U+ ZXMVYQ9ykfIbSupN4zS11vw7LOj8Ddh/8ps/1ugB6yXhVWoalVuRBW9cGKPIGtKp +G8h+UeDCdCzcCXQLNQyZXKYW8FVRHI80+p//iGt508wRPOmv61q9WuLcjyrSDmA 4XhEA0G8AJuaCOQ= =hTfo -----END PGP SIGNATURE----- Tue Dec 24 02:15:13 UTC 2024 I: Checking whether the package is not for us Tue Dec 24 02:15:13 UTC 2024 I: Starting 1st build on remote node infom01-amd64.debian.net. Tue Dec 24 02:15:13 UTC 2024 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Tue Dec 24 02:15:53 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Dec 23 14:15:15 -12 2024 I: pbuilder-time-stamp: 1735006515 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-das-lite-perl_2.11-9.dsc] I: copying [./libbio-das-lite-perl_2.11.orig.tar.gz] I: copying [./libbio-das-lite-perl_2.11-9.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Dec 1 12:00:33 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-das-lite-perl_2.11-9.dsc: no acceptable signature found dpkg-source: info: extracting libbio-das-lite-perl in libbio-das-lite-perl-2.11 dpkg-source: info: unpacking libbio-das-lite-perl_2.11.orig.tar.gz dpkg-source: info: unpacking libbio-das-lite-perl_2.11-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_test_failure.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1662576/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f8cbe16a2951452392afcbbd8b650acb' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1662576' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.A0oKGmdM/pbuilderrc_nDej --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.A0oKGmdM/b1 --logfile b1/build.log libbio-das-lite-perl_2.11-9.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-28-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1662576/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org> Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), perl, libmodule-build-perl, libio-stringy-perl, libreadonly-perl, libwww-curl-perl, libwww-perl, libtest-pod-coverage-perl, libtest-distribution-perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19980 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libmodule-build-perl; however: Package libmodule-build-perl is not installed. pbuilder-satisfydepends-dummy depends on libio-stringy-perl; however: Package libio-stringy-perl is not installed. pbuilder-satisfydepends-dummy depends on libreadonly-perl; however: Package libreadonly-perl is not installed. pbuilder-satisfydepends-dummy depends on libwww-curl-perl; however: Package libwww-curl-perl is not installed. pbuilder-satisfydepends-dummy depends on libwww-perl; however: Package libwww-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-pod-coverage-perl; however: Package libtest-pod-coverage-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-distribution-perl; however: Package libtest-distribution-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdevel-symdump-perl{a} libelf1t64{a} libencode-locale-perl{a} libfile-find-rule-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-stringy-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libmodule-build-perl{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnumber-compare-perl{a} libpipeline1{a} libpod-coverage-perl{a} libpod-parser-perl{a} libpsl5t64{a} libreadonly-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtest-distribution-perl{a} libtest-pod-coverage-perl{a} libtest-pod-perl{a} libtext-glob-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-curl-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libdata-dump-perl libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libmailtools-perl libmodule-signature-perl libpod-readme-perl libsasl2-modules libsoftware-license-perl lynx publicsuffix wget 0 packages upgraded, 85 newly installed, 0 to remove and 0 not upgraded. Need to get 25.7 MB of archives. After unpacking 90.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20241223 [164 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-3 [200 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-6 [1184 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-12 [92.0 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-3 [723 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.22 [90.5 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 25 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-3 [1600 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.22 [919 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2~rc1-2 [23.8 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 39 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.11.1-1 [360 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libdevel-symdump-perl all 2.18-5 [15.8 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get: 55 http://deb.debian.org/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get: 56 http://deb.debian.org/debian unstable/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libhtml-parser-perl amd64 3.83-1+b1 [99.7 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get: 70 http://deb.debian.org/debian unstable/main amd64 libnet-ssleay-perl amd64 1.94-2 [339 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libio-stringy-perl all 2.113-2 [48.3 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libwww-perl all 6.77-1 [183 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libmodule-build-perl all 0.423400-2 [252 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libpod-parser-perl all 1.67-1 [94.1 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libpod-coverage-perl all 0.23-2 [22.1 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libreadonly-perl all 2.050-3 [23.1 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libtest-pod-perl all 1.52-3 [12.6 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libtest-pod-coverage-perl all 1.10-3 [14.9 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libtest-distribution-perl all 2.00-7 [17.0 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libwww-curl-perl amd64 4.17-11 [57.9 kB] Fetched 25.7 MB in 3s (9558 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19980 files and directories currently installed.) Preparing to unpack .../00-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.3.2-2_amd64.deb ... Unpacking openssl (3.3.2-2) ... 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Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.423400-2) ... Selecting previously unselected package libpod-parser-perl. Preparing to unpack .../78-libpod-parser-perl_1.67-1_all.deb ... Adding 'diversion of /usr/bin/podselect to /usr/bin/podselect.bundled by libpod-parser-perl' Adding 'diversion of /usr/share/man/man1/podselect.1.gz to /usr/share/man/man1/podselect.bundled.1.gz by libpod-parser-perl' Unpacking libpod-parser-perl (1.67-1) ... Selecting previously unselected package libpod-coverage-perl. Preparing to unpack .../79-libpod-coverage-perl_0.23-2_all.deb ... Unpacking libpod-coverage-perl (0.23-2) ... Selecting previously unselected package libreadonly-perl. Preparing to unpack .../80-libreadonly-perl_2.050-3_all.deb ... 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Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libio-stringy-perl (2.113-2) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.22) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libtest-pod-perl (1.52-3) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up gettext-base (0.22.5-3) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libcom-err2:amd64 (1.47.2~rc1-2) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libmodule-build-perl (0.423400-2) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up libreadonly-perl (2.050-3) ... Setting up autotools-dev (20220109.1) ... Setting up libfile-find-rule-perl (0.34-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libio-html-perl (1.004-3) ... Setting up libpod-parser-perl (1.67-1) ... Setting up autopoint (0.22.5-3) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:amd64 (1.9.1-1) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libdevel-symdump-perl (2.18-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up openssl (3.3.2-2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liburi-perl (5.30-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.22.5-3) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.4.7-8) ... Setting up libpod-coverage-perl (0.23-2) ... Setting up libnet-http-perl (6.23-1) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-6) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b1) ... Setting up libtest-pod-coverage-perl (1.10-3) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libtest-distribution-perl (2.00-7) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libcurl3t64-gnutls:amd64 (8.11.1-1) ... Setting up libwww-curl-perl:amd64 (4.17-11) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.22) ... Setting up libwww-perl (6.77-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Processing triggers for libc-bin (2.40-4) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbio-das-lite-perl-2.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-das-lite-perl_2.11-9_source.changes dpkg-buildpackage: info: source package libbio-das-lite-perl dpkg-buildpackage: info: source version 2.11-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org> dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=perl_build dh_auto_clean -O--buildsystem=perl_build dh_autoreconf_clean -O--buildsystem=perl_build dh_clean -O--buildsystem=perl_build debian/rules binary dh binary --buildsystem=perl_build dh_update_autotools_config -O--buildsystem=perl_build dh_autoreconf -O--buildsystem=perl_build dh_auto_configure -O--buildsystem=perl_build /usr/bin/perl Build.PL --installdirs vendor --config "optimize=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-das-lite-perl-2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-das-lite-perl-2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Bio-Das-Lite' version '2.11' ****************************************************************************** ** Some of the tests for this module need internet access ** ** Also remember to set your http_proxy environment variable if you need to ** ****************************************************************************** dh_auto_build -O--buildsystem=perl_build /usr/bin/perl Build Building Bio-Das-Lite debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libbio-das-lite-perl-2.11' http_proxy= dh_auto_test -- --test_files="t/00-critic.t t/00-pod.t t/00-podcoverage.t t/06-singledsn-singleseg.t t/20-authentication.t t/21-proxy.t t/40-dna.t t/45-sequence.t t/50-entry_points.t t/60-features.t t/60-features_chunked.t t/60-features_empty.t t/61-features_group.t t/70-alignment.t t/80-structure.t t/90-sources.t" /usr/bin/perl Build test --verbose 1 "--test_files=t/00-critic.t t/00-pod.t t/00-podcoverage.t t/06-singledsn-singleseg.t t/20-authentication.t t/21-proxy.t t/40-dna.t t/45-sequence.t t/50-entry_points.t t/60-features.t t/60-features_chunked.t t/60-features_empty.t t/61-features_group.t t/70-alignment.t t/80-structure.t t/90-sources.t" t/00-critic.t ............... skipped: Author test. Set $ENV{TEST_AUTHOR} to a true value to run. t/00-pod.t .................. 1..1 ok 1 - POD test for blib/lib/Bio/Das/Lite.pm ok t/00-podcoverage.t .......... 1..1 ok 1 - Pod coverage on Bio::Das::Lite ok t/06-singledsn-singleseg.t .. 1..13 ok 1 - entry_points returns a hash ok 2 - entry_points returns the same number of sources ok 3 - entry_points hash contains an array ok 4 - types returns a hash ok 5 - types returns the same number of sources ok 6 - types hash contains an array ok 7 - features returns a hash ok 8 - features returns the same number of sources ok 9 - features hash contains an array ok 10 - sequence returns a hash ok 11 - sequence returns the same number of sources ok 12 - sequence hash contains an array ok 13 - requesting 1Kb of sequence returns 1Kb ok t/20-authentication.t ....... 1..3 ok 1 - http_proxy processed ok ok 2 - proxy_user processed ok ok 3 - proxy_pass processed ok ok t/21-proxy.t ................ skipped: Proxy testing requires POE and WWW::Curl::Simple t/40-dna.t .................. 1..1 ok 1 - is_deeply ok t/45-sequence.t ............. 1..1 ok 1 - is_deeply ok t/50-entry_points.t ......... 1..1 ok 1 - Correct number of segments returned ok t/60-features.t ............. 1..3 ok 1 - Whole-response-mode gave correct number of features returned ok 2 - bug from Nick Landridge 2011-05-05 ok 3 - bug from Nick Landridge 2011-05-05 ok t/60-features_chunked.t ..... 1..1 ok 1 - Chunked-response-mode gave number of features returned ok t/60-features_empty.t ....... 1..5 ok 1 - Empty segment gives a hash with seginfo rather than an empty array of features ok 2 - segment_id ok 3 - segment_version ok 4 - segment_start ok 5 - segment_stop ok t/61-features_group.t ....... 1..5 ok 1 - Corrent number of links returned ok 2 - Corrent number of notes returned ok 3 - Correct link href ok 4 - Correct link text ok 5 - Correct note text ok t/70-alignment.t ............ 1..4 ok 1 - Whole-response-mode gave correct number of features returned ok 2 - Got expected number of alignment objects ok 3 - Got expected number of alignment blocks ok 4 - Got cigar string ok t/80-structure.t ............ 1..9 ok 1 - Whole-response-mode gave correct structure ok 2 - Got the correct number of chains ok 3 - Got the correct number of groups for the chain ok 4 - Got the correct number of atoms for the first group ok 5 - Got the correct number of het ok 6 - Got the correct number of groups for the het ok 7 - Got the correct number of atoms for the first group ok 8 - Got connection data ok 9 - Got correct number of atoms in connection ok t/90-sources.t .............. 1..2 ok 1 - Whole-response-mode gave correct number of sources returned ok 2 - Got maintainers email ok All tests successful. Files=16, Tests=50, 1 wallclock secs ( 0.05 usr 0.01 sys + 0.97 cusr 0.20 csys = 1.23 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-das-lite-perl-2.11' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=perl_build dh_prep -O--buildsystem=perl_build dh_auto_install --destdir=debian/libbio-das-lite-perl/ -O--buildsystem=perl_build /usr/bin/perl Build install --destdir /build/reproducible-path/libbio-das-lite-perl-2.11/debian/libbio-das-lite-perl --create_packlist 0 Building Bio-Das-Lite Installing /build/reproducible-path/libbio-das-lite-perl-2.11/debian/libbio-das-lite-perl/usr/share/perl5/Bio/Das/Lite.pm Installing /build/reproducible-path/libbio-das-lite-perl-2.11/debian/libbio-das-lite-perl/usr/share/man/man3/Bio::Das::Lite.3pm dh_installdocs -O--buildsystem=perl_build dh_installchangelogs -O--buildsystem=perl_build debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/libbio-das-lite-perl-2.11' dh_installexamples sed -i 's:#!/usr/local/bin/perl:#!/usr/bin/perl:' debian/*/usr/share/doc/*/examples/* make[1]: Leaving directory '/build/reproducible-path/libbio-das-lite-perl-2.11' dh_installman -O--buildsystem=perl_build dh_installsystemduser -O--buildsystem=perl_build dh_perl -O--buildsystem=perl_build dh_link -O--buildsystem=perl_build dh_strip_nondeterminism -O--buildsystem=perl_build dh_compress -O--buildsystem=perl_build dh_fixperms -O--buildsystem=perl_build dh_missing -O--buildsystem=perl_build dh_installdeb -O--buildsystem=perl_build dh_gencontrol -O--buildsystem=perl_build dh_md5sums -O--buildsystem=perl_build dh_builddeb -O--buildsystem=perl_build dpkg-deb: building package 'libbio-das-lite-perl' in '../libbio-das-lite-perl_2.11-9_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-das-lite-perl_2.11-9_amd64.buildinfo dpkg-genchanges --build=binary -O../libbio-das-lite-perl_2.11-9_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1662576 and its subdirectories I: Current time: Mon Dec 23 14:15:52 -12 2024 I: pbuilder-time-stamp: 1735006552 Tue Dec 24 02:15:53 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Tue Dec 24 02:15:53 UTC 2024 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Tue Dec 24 02:18:04 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. Tue Dec 24 02:18:05 UTC 2024 I: libbio-das-lite-perl_2.11-9_amd64.changes: Format: 1.8 Date: Sun, 01 Dec 2024 12:24:24 +0100 Source: libbio-das-lite-perl Binary: libbio-das-lite-perl Architecture: all Version: 2.11-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Changed-By: Étienne Mollier <emollier@debian.org> Description: libbio-das-lite-perl - implementation of the BioDas protocol Closes: 1081376 Changes: libbio-das-lite-perl (2.11-9) unstable; urgency=medium . * Team upload. * d/control: point the home page to CPAN. (Closes: #1081376) * d/control: declare compliance to standards version 4.7.0. * fix_test_failure.patch: normalize last update timestamp. Checksums-Sha1: 6e6c9b0f78300b9619ac17d37fea1915d8b34a5d 24636 libbio-das-lite-perl_2.11-9_all.deb f3f6205ea4f48f46dff16dc07b48e9421b63a732 6823 libbio-das-lite-perl_2.11-9_amd64.buildinfo Checksums-Sha256: 38f5706a467fdd7cf70c7e75b05b44d97f33edc7085aeae588f0d500af68a13f 24636 libbio-das-lite-perl_2.11-9_all.deb a707da42fdba78c305179067a1e1e92492fd2e1723736edcc996aebc3da5411b 6823 libbio-das-lite-perl_2.11-9_amd64.buildinfo Files: 8d0531ae2dd35637e82d776451f954a2 24636 perl optional libbio-das-lite-perl_2.11-9_all.deb 2ca6062cc80da1560779fdcb44a26416 6823 perl optional libbio-das-lite-perl_2.11-9_amd64.buildinfo Tue Dec 24 02:18:06 UTC 2024 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_35-40603.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.A0oKGmdM/libbio-das-lite-perl_2.11-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.A0oKGmdM/libbio-das-lite-perl_2.11-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.A0oKGmdM/libbio-das-lite-perl_2.11-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.A0oKGmdM/b1/libbio-das-lite-perl_2.11-9_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.A0oKGmdM/b2/libbio-das-lite-perl_2.11-9_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.330s) 0.330s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.013s) 0.013s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 625ms CPU time consumed: 621ms Tue Dec 24 02:18:07 UTC 2024 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Tue Dec 24 02:18:07 UTC 2024 I: libbio-das-lite-perl from unstable built successfully and reproducibly on amd64. Tue Dec 24 02:18:08 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Dec 24 02:18:08 UTC 2024 I: Submitting 8.0K b1/libbio-das-lite-perl_2.11-9_amd64.buildinfo.asc Tue Dec 24 02:18:09 UTC 2024 I: Submitting 8.0K b2/libbio-das-lite-perl_2.11-9_amd64.buildinfo.asc Tue Dec 24 02:18:10 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Dec 24 02:18:10 UTC 2024 I: Done submitting .buildinfo files. Tue Dec 24 02:18:10 UTC 2024 I: Removing signed libbio-das-lite-perl_2.11-9_amd64.buildinfo.asc files: removed './b1/libbio-das-lite-perl_2.11-9_amd64.buildinfo.asc' removed './b2/libbio-das-lite-perl_2.11-9_amd64.buildinfo.asc'