Sun May 5 19:41:18 UTC 2024 I: starting to build lambda-align/unstable/amd64 on jenkins on '2024-05-05 19:40' Sun May 5 19:41:18 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_14/5747/console.log Sun May 5 19:41:18 UTC 2024 I: Downloading source for unstable/lambda-align=1.0.3-6 --2024-05-05 19:41:18-- http://deb.debian.org/debian/pool/main/l/lambda-align/lambda-align_1.0.3-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1797 (1.8K) [text/prs.lines.tag] Saving to: ‘lambda-align_1.0.3-6.dsc’ 0K . 100% 249M=0s 2024-05-05 19:41:18 (249 MB/s) - ‘lambda-align_1.0.3-6.dsc’ saved [1797/1797] Sun May 5 19:41:18 UTC 2024 I: lambda-align_1.0.3-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: lambda-align Binary: lambda-align Architecture: any Version: 1.0.3-6 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss , Michael R. Crusoe Homepage: https://seqan.github.io/lambda Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/lambda-align Vcs-Git: https://salsa.debian.org/med-team/lambda-align.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, coreutils, diffutils, gzip, openssl Build-Depends: debhelper (>= 12~), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl Package-List: lambda-align deb science optional arch=any Checksums-Sha1: abf40a7204b2c249152a7e4275c6adb3628fe8cf 322730 lambda-align_1.0.3.orig.tar.gz f7950e95ae15131b6a3ef5c0aac6a65e30b681de 8076 lambda-align_1.0.3-6.debian.tar.xz Checksums-Sha256: 324f90dbc095c56792a77a002e64a98465a4853f74a141a1182e7a6f540545a2 322730 lambda-align_1.0.3.orig.tar.gz 273eb80db8d211a4962c9293da44c3c306f9285cac40bc16214792ac783c8aaf 8076 lambda-align_1.0.3-6.debian.tar.xz Files: b18d7c968b8c52851c8037dfc8066bce 322730 lambda-align_1.0.3.orig.tar.gz c3059711cc55cec3d40ede08e067c36a 8076 lambda-align_1.0.3-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEEhFH5F4Fy5+Lcc/eVUfhKj+zKfgkFAl4+1N0ACgkQUfhKj+zK fgn38wf/eQZYcur2B80xsxni8nDV4Gllx537JzWZrKZjljPw5jJ43NPo0q6eukyc E1PSuSc7ZAsw9socn3OdAHODECCS2qaFxhUqTJHXnPsp2T8GnbW1Sxo6suhCA6+4 8xF//SRM3nETO+lSJbxHlWDlQ9Qm86D6nHsh7JvYkEfdA2bdnJBVxU/TcATSjVHs e+3zbRN2E0aJfLQ6nN2TNyoe2cbeZ7kY5sDi+uuG77ln2E1FtPNdqTY7T2Ydn8en m/LktqBcyeMs+UuWLYLdUt/gXFS21IpEm15JbRDcK6uoQCg1CctKyWVPuXuXYHwG EvH+mavYPgSZDciQ/wysdXzHa9aWjA== =pD29 -----END PGP SIGNATURE----- Sun May 5 19:41:18 UTC 2024 I: Checking whether the package is not for us Sun May 5 19:41:18 UTC 2024 I: Starting 1st build on remote node ionos5-amd64.debian.net. Sun May 5 19:41:18 UTC 2024 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Sun May 5 19:46:02 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Jun 7 14:04:19 -12 2025 I: pbuilder-time-stamp: 1749348259 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [lambda-align_1.0.3-6.dsc] I: copying [./lambda-align_1.0.3.orig.tar.gz] I: copying [./lambda-align_1.0.3-6.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Feb 8 15:33:49 2020 gpgv: using RSA key 8451F9178172E7E2DC73F79551F84A8FECCA7E09 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./lambda-align_1.0.3-6.dsc: no acceptable signature found dpkg-source: info: extracting lambda-align in lambda-align-1.0.3 dpkg-source: info: unpacking lambda-align_1.0.3.orig.tar.gz dpkg-source: info: unpacking lambda-align_1.0.3-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying set-seqan-cmake-dir.patch dpkg-source: info: applying force-link-rt-pthread.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1881741/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='2d38bc886ee44829ab14709c4c004ce0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1881741' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.63owWz6x/pbuilderrc_Eopy --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.63owWz6x/b1 --logfile b1/build.log lambda-align_1.0.3-6.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 7 14:06 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1881741/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev; however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on openssl; however: Package openssl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libssh2-1t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 58 newly installed, 0 to remove and 0 not upgraded. Need to get 39.2 MB of archives. After unpacking 150 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.2-2 [346 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1~rc2-1 [22.6 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 26 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.7.1-5 [441 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.48.0-1.1 [147 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.29.2-2 [2167 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.29.2-2 [10.7 MB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 49 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-5.1 [31.3 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libseqan2-dev all 2.4.0+dfsg-16 [1216 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Fetched 39.2 MB in 0s (123 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_amd64.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... 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Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40-8_amd64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.12.1-1_amd64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... 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I: Building the package I: Running cd /build/reproducible-path/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lambda-align_1.0.3-6_source.changes dpkg-buildpackage: info: source package lambda-align dpkg-buildpackage: info: source version 1.0.3-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --builddirectory=build debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' rm -f *.1 dh_auto_clean -- make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_autoreconf_clean -O--builddirectory=build dh_clean -O--builddirectory=build debian/rules build dh build --builddirectory=build dh_update_autotools_config -O--builddirectory=build dh_autoreconf -O--builddirectory=build debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' dh_auto_configure -- -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=Release cd build && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=Release .. CMake Deprecation Warning at CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. Compiler Detection -- The CXX compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Dependency detection CMake Warning (dev) at /usr/share/cmake/seqan/seqan-config.cmake:218 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. Call Stack (most recent call first): src/CMakeLists.txt:31 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- These dependencies where found: OPENMP TRUE -fopenmp ZLIB TRUE 1.3 BZIP2 TRUE 1.0.8 SEQAN TRUE 2.4.0 -- The requirements where met. Build configuration -- LAMBDA version is: 1.0.2 -- The following options are selected for the build: LAMBDA_FASTBUILD OFF LAMBDA_LINGAPS_OPT OFF LAMBDA_MMAPPED_DB ON LAMBDA_NATIVE_BUILD OFF LAMBDA_STATIC_BUILD OFF -- Run 'cmake -LH' to get a comment on each option. -- Remove CMakeCache.txt and re-run cmake with -DOPTIONNAME=ON|OFF to change an option. Setting up unit tests CMake Deprecation Warning at tests/CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring done (1.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/lambda-align-1.0.3/build make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_auto_build -O--builddirectory=build cd build && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align-1.0.3 -B/build/reproducible-path/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles /build/reproducible-path/lambda-align-1.0.3/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 25%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o [ 50%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=42 -O3 -DNDEBUG -s -MD -MT src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -MF CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o.d -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=42 -O3 -DNDEBUG -s -MD -MT src/CMakeFiles/lambda.dir/lambda.cpp.o -MF CMakeFiles/lambda.dir/lambda.cpp.o.d -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:32: /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/misc.hpp:34, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:35, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp:31: /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:37: /build/reproducible-path/lambda-align-1.0.3/src/radix_inplace.h:121:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 121 | public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/seqan/basic/debug_test_system.h:150, from /usr/include/seqan/basic/basic_debug.h:52, from /usr/include/seqan/basic.h:49, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp:22: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/radix_inplace.h:145:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 145 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:34: /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:79:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 79 | public ::std::binary_function < TSav, TSav, bool > | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:22: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan::BlastProgram::BLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/reproducible-path/lambda-align-1.0.3/src/output.hpp:25, from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan::BlastProgram::BLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan::BlastProgram::BLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan::BlastProgram::BLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan::BlastProgram::BLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan::BlastProgram::BLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/options.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:173:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 173 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/options.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:173:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 173 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ [ 75%] Linking CXX executable ../bin/lambda_indexer cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda_indexer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=42 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -o ../bin/lambda_indexer -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /usr/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:280:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:290:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'assign.constprop.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'append': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 75%] Built target lambda_indexer [100%] Linking CXX executable ../bin/lambda cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=42 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda.dir/lambda.cpp.o -o ../bin/lambda -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'operator++.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'append': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:280:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:290:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_popIterators.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_popIterators.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_popIterators.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_popIterators.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'assign.constprop.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_popIterators.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_popIterators.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In member function 'operator++', inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:317:20: /usr/include/seqan/pipe/pipe_sampler.h:470:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 470 | outRef->i2.i[skipped++] = 0; | ^ /usr/include/seqan/basic/tuple_base.h: In member function 'process.isra': /usr/include/seqan/basic/tuple_base.h:141:46: note: at offset 7 into destination object 'i' of size 7 141 | typename StoredTupleValue_::Type i[SIZE]; | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [100%] Built target lambda make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' cd build/tests && ctest 42 Test project /build/reproducible-path/lambda-align-1.0.3/build/tests Start 1: test_mkindex_blastn_sa 1/80 Test #1: test_mkindex_blastn_sa ........... Passed 0.09 sec Start 2: test_mkindex_blastn_fm 2/80 Test #2: test_mkindex_blastn_fm ........... Passed 0.11 sec Start 3: test_mkindex_blastp_sa 3/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.08 sec Start 4: test_mkindex_blastp_fm 4/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.06 sec Start 5: test_mkindex_blastx_sa 5/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.04 sec Start 6: test_mkindex_blastx_fm 6/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.06 sec Start 7: test_mkindex_tblastn_sa 7/80 Test #7: test_mkindex_tblastn_sa .......... Passed 0.38 sec Start 8: test_mkindex_tblastn_fm 8/80 Test #8: test_mkindex_tblastn_fm .......... Passed 0.42 sec Start 9: test_mkindex_tblastx_sa 9/80 Test #9: test_mkindex_tblastx_sa .......... Passed 0.11 sec Start 10: test_mkindex_tblastx_fm 10/80 Test #10: test_mkindex_tblastx_fm .......... Passed 0.24 sec Start 11: test_search_blastn_sa_m0 11/80 Test #11: test_search_blastn_sa_m0 ......... Passed 2.97 sec Start 12: test_search_blastn_sa_m8 12/80 Test #12: test_search_blastn_sa_m8 ......... Passed 1.36 sec Start 13: test_search_blastn_sa_m9 13/80 Test #13: test_search_blastn_sa_m9 ......... Passed 1.30 sec Start 14: test_search_blastn_sa_sam 14/80 Test #14: test_search_blastn_sa_sam ........ Passed 2.01 sec Start 15: test_search_blastn_sa_bam 15/80 Test #15: test_search_blastn_sa_bam ........ Passed 1.29 sec Start 16: test_search_blastn_sa_m9.gz 16/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 1.71 sec Start 17: test_search_blastn_sa_sam.bz2 17/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 2.50 sec Start 18: test_search_blastn_fm_m0 18/80 Test #18: test_search_blastn_fm_m0 ......... Passed 6.67 sec Start 19: test_search_blastn_fm_m8 19/80 Test #19: test_search_blastn_fm_m8 ......... Passed 5.48 sec Start 20: test_search_blastn_fm_m9 20/80 Test #20: test_search_blastn_fm_m9 ......... Passed 1.57 sec Start 21: test_search_blastn_fm_sam 21/80 Test #21: test_search_blastn_fm_sam ........ Passed 2.37 sec Start 22: test_search_blastn_fm_bam 22/80 Test #22: test_search_blastn_fm_bam ........ Passed 1.32 sec Start 23: test_search_blastn_fm_m9.gz 23/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 1.47 sec Start 24: test_search_blastn_fm_sam.bz2 24/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 1.97 sec Start 25: test_search_blastp_sa_m0 25/80 Test #25: test_search_blastp_sa_m0 ......... Passed 0.21 sec Start 26: test_search_blastp_sa_m8 26/80 Test #26: test_search_blastp_sa_m8 ......... Passed 0.22 sec Start 27: test_search_blastp_sa_m9 27/80 Test #27: test_search_blastp_sa_m9 ......... Passed 0.17 sec Start 28: test_search_blastp_sa_sam 28/80 Test #28: test_search_blastp_sa_sam ........ Passed 0.25 sec Start 29: test_search_blastp_sa_bam 29/80 Test #29: test_search_blastp_sa_bam ........ Passed 0.33 sec Start 30: test_search_blastp_sa_m9.gz 30/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 0.32 sec Start 31: test_search_blastp_sa_sam.bz2 31/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 0.37 sec Start 32: test_search_blastp_fm_m0 32/80 Test #32: test_search_blastp_fm_m0 ......... Passed 0.21 sec Start 33: test_search_blastp_fm_m8 33/80 Test #33: test_search_blastp_fm_m8 ......... Passed 0.19 sec Start 34: test_search_blastp_fm_m9 34/80 Test #34: test_search_blastp_fm_m9 ......... Passed 0.29 sec Start 35: test_search_blastp_fm_sam 35/80 Test #35: test_search_blastp_fm_sam ........ Passed 0.26 sec Start 36: test_search_blastp_fm_bam 36/80 Test #36: test_search_blastp_fm_bam ........ Passed 0.21 sec Start 37: test_search_blastp_fm_m9.gz 37/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 0.20 sec Start 38: test_search_blastp_fm_sam.bz2 38/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 0.29 sec Start 39: test_search_blastx_sa_m0 39/80 Test #39: test_search_blastx_sa_m0 ......... Passed 0.71 sec Start 40: test_search_blastx_sa_m8 40/80 Test #40: test_search_blastx_sa_m8 ......... Passed 1.68 sec Start 41: test_search_blastx_sa_m9 41/80 Test #41: test_search_blastx_sa_m9 ......... Passed 0.71 sec Start 42: test_search_blastx_sa_sam 42/80 Test #42: test_search_blastx_sa_sam ........ Passed 0.67 sec Start 43: test_search_blastx_sa_bam 43/80 Test #43: test_search_blastx_sa_bam ........ Passed 0.80 sec Start 44: test_search_blastx_sa_m9.gz 44/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 1.11 sec Start 45: test_search_blastx_sa_sam.bz2 45/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 1.68 sec Start 46: test_search_blastx_fm_m0 46/80 Test #46: test_search_blastx_fm_m0 ......... Passed 4.06 sec Start 47: test_search_blastx_fm_m8 47/80 Test #47: test_search_blastx_fm_m8 ......... Passed 1.62 sec Start 48: test_search_blastx_fm_m9 48/80 Test #48: test_search_blastx_fm_m9 ......... Passed 1.37 sec Start 49: test_search_blastx_fm_sam 49/80 Test #49: test_search_blastx_fm_sam ........ Passed 0.72 sec Start 50: test_search_blastx_fm_bam 50/80 Test #50: test_search_blastx_fm_bam ........ Passed 0.69 sec Start 51: test_search_blastx_fm_m9.gz 51/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 0.81 sec Start 52: test_search_blastx_fm_sam.bz2 52/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 2.45 sec Start 53: test_search_tblastn_sa_m0 53/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 0.83 sec Start 54: test_search_tblastn_sa_m8 54/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 0.67 sec Start 55: test_search_tblastn_sa_m9 55/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 1.03 sec Start 56: test_search_tblastn_sa_sam 56/80 Test #56: test_search_tblastn_sa_sam ....... Passed 0.99 sec Start 57: test_search_tblastn_sa_bam 57/80 Test #57: test_search_tblastn_sa_bam ....... Passed 0.80 sec Start 58: test_search_tblastn_sa_m9.gz 58/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 2.22 sec Start 59: test_search_tblastn_sa_sam.bz2 59/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 1.22 sec Start 60: test_search_tblastn_fm_m0 60/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 1.60 sec Start 61: test_search_tblastn_fm_m8 61/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 0.59 sec Start 62: test_search_tblastn_fm_m9 62/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 0.59 sec Start 63: test_search_tblastn_fm_sam 63/80 Test #63: test_search_tblastn_fm_sam ....... Passed 0.84 sec Start 64: test_search_tblastn_fm_bam 64/80 Test #64: test_search_tblastn_fm_bam ....... Passed 0.50 sec Start 65: test_search_tblastn_fm_m9.gz 65/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 0.63 sec Start 66: test_search_tblastn_fm_sam.bz2 66/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 0.87 sec Start 67: test_search_tblastx_sa_m0 67/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 2.93 sec Start 68: test_search_tblastx_sa_m8 68/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 3.52 sec Start 69: test_search_tblastx_sa_m9 69/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 4.29 sec Start 70: test_search_tblastx_sa_sam 70/80 Test #70: test_search_tblastx_sa_sam ....... Passed 4.02 sec Start 71: test_search_tblastx_sa_bam 71/80 Test #71: test_search_tblastx_sa_bam ....... Passed 2.90 sec Start 72: test_search_tblastx_sa_m9.gz 72/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 2.87 sec Start 73: test_search_tblastx_sa_sam.bz2 73/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 4.88 sec Start 74: test_search_tblastx_fm_m0 74/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 3.74 sec Start 75: test_search_tblastx_fm_m8 75/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 3.50 sec Start 76: test_search_tblastx_fm_m9 76/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 2.44 sec Start 77: test_search_tblastx_fm_sam 77/80 Test #77: test_search_tblastx_fm_sam ....... Passed 2.35 sec Start 78: test_search_tblastx_fm_bam 78/80 Test #78: test_search_tblastx_fm_bam ....... Passed 2.16 sec Start 79: test_search_tblastx_fm_m9.gz 79/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 2.60 sec Start 80: test_search_tblastx_fm_sam.bz2 80/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 4.57 sec 100% tests passed, 0 tests failed out of 80 Total Test time (real) = 118.39 sec make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --builddirectory=build dh_testroot -O--builddirectory=build dh_prep -O--builddirectory=build dh_auto_install --destdir=debian/lambda-align/ -O--builddirectory=build cd build && make -j42 install DESTDIR=/build/reproducible-path/lambda-align-1.0.3/debian/lambda-align AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align-1.0.3 -B/build/reproducible-path/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles /build/reproducible-path/lambda-align-1.0.3/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'. make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'. make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 50%] Built target lambda_indexer [100%] Built target lambda make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/bin/lambda -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/bin/lambda_indexer -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE.rst -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE-BSD.rst -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE-GPL3.rst -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/README.rst make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' dh_install find debian -name "LICENSE*.rst" -delete make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_installdocs -O--builddirectory=build dh_installchangelogs -O--builddirectory=build debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' ./build/bin/lambda --export-help man \ | sed -r 's/(number of threads.*) Default:.*/\1/g' \ | sed -r 's/\(Git commit +\)//g' > lambda.1 mkdir: cannot create directory '/nonexistent': Permission denied ./build/bin/lambda_indexer --export-help man \ | sed -r 's/(number of threads.*) Default:.*/\1/g' \ | sed -r 's/(defaults to working directory.*) Default:.*/\1/g' \ | sed -r 's/\(Git commit +\)//g' > lambda_indexer.1 mkdir: cannot create directory '/nonexistent': Permission denied dh_installman -- make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_installinit -O--builddirectory=build dh_installsystemduser -O--builddirectory=build dh_perl -O--builddirectory=build dh_link -O--builddirectory=build dh_strip_nondeterminism -O--builddirectory=build dh_compress -O--builddirectory=build dh_fixperms -O--builddirectory=build dh_missing -O--builddirectory=build dh_dwz -O--builddirectory=build dwz: debian/lambda-align/usr/bin/lambda: .debug_info section not present dwz: debian/lambda-align/usr/bin/lambda_indexer: .debug_info section not present dwz: Too few files for multifile optimization dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it. dh_dwz: warning: Common issues include no debug information at all (missing -g) and dh_dwz: warning: compressed debug information (#931891). dh_strip -O--builddirectory=build dh_makeshlibs -O--builddirectory=build dh_shlibdeps -O--builddirectory=build dh_installdeb -O--builddirectory=build dh_gencontrol -O--builddirectory=build dh_md5sums -O--builddirectory=build dh_builddeb -O--builddirectory=build dpkg-deb: building package 'lambda-align' in '../lambda-align_1.0.3-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../lambda-align_1.0.3-6_amd64.buildinfo dpkg-genchanges --build=binary -O../lambda-align_1.0.3-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1881741 and its subdirectories I: Current time: Sat Jun 7 14:09:01 -12 2025 I: pbuilder-time-stamp: 1749348541 Sun May 5 19:46:03 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Sun May 5 19:46:03 UTC 2024 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Sun May 5 19:54:16 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Sun May 5 19:54:16 UTC 2024 I: lambda-align_1.0.3-6_amd64.changes: Format: 1.8 Date: Sat, 08 Feb 2020 16:22:53 +0100 Source: lambda-align Binary: lambda-align Architecture: amd64 Version: 1.0.3-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Sascha Steinbiss Description: lambda-align - Local Aligner for Massive Biological DatA Changes: lambda-align (1.0.3-6) unstable; urgency=medium . * Reset CMAKE_BUILD_TYPE to "Release" for reproducibility. Checksums-Sha1: 7d2655bb16ab6d543e01934d7ff15a8ee9b41321 5947 lambda-align_1.0.3-6_amd64.buildinfo 5af6ae6f8e0f9ad800fa5df940061cebce3dca7a 1342320 lambda-align_1.0.3-6_amd64.deb Checksums-Sha256: f36c0c36ec76d2aab3fabdc1a66aed44efc16f1c677592d12bafcbf329b46424 5947 lambda-align_1.0.3-6_amd64.buildinfo 6ad402f1c19ab4e22459cf745fbc77b1b4b21b31c2f9d4d730d69ecbb6464f49 1342320 lambda-align_1.0.3-6_amd64.deb Files: 3bf4e41492b4201700875ad2aace3bd6 5947 science optional lambda-align_1.0.3-6_amd64.buildinfo 3f93f95136079405a4dc263e9aaebb9b 1342320 science optional lambda-align_1.0.3-6_amd64.deb Sun May 5 19:54:17 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_14-5747.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.63owWz6x/lambda-align_1.0.3-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.63owWz6x/lambda-align_1.0.3-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.63owWz6x/lambda-align_1.0.3-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.63owWz6x/b1/lambda-align_1.0.3-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.63owWz6x/b2/lambda-align_1.0.3-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.382s) 0.382s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.029s) 0.029s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 728ms CPU time consumed: 729ms Sun May 5 19:54:18 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Sun May 5 19:54:18 UTC 2024 I: lambda-align from unstable built successfully and reproducibly on amd64. Sun May 5 19:54:20 UTC 2024 I: Submitting .buildinfo files to external archives: Sun May 5 19:54:20 UTC 2024 I: Submitting 8.0K b1/lambda-align_1.0.3-6_amd64.buildinfo.asc Sun May 5 19:54:21 UTC 2024 I: Submitting 8.0K b2/lambda-align_1.0.3-6_amd64.buildinfo.asc Sun May 5 19:54:22 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun May 5 19:54:22 UTC 2024 I: Done submitting .buildinfo files. Sun May 5 19:54:22 UTC 2024 I: Removing signed lambda-align_1.0.3-6_amd64.buildinfo.asc files: removed './b1/lambda-align_1.0.3-6_amd64.buildinfo.asc' removed './b2/lambda-align_1.0.3-6_amd64.buildinfo.asc'