Tue Dec 3 20:59:15 UTC 2024 I: starting to build hts-nim-tools/unstable/amd64 on jenkins on '2024-12-03 20:59' Tue Dec 3 20:59:15 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_33/40114/console.log Tue Dec 3 20:59:15 UTC 2024 I: Downloading source for unstable/hts-nim-tools=0.2.1-2 --2024-12-03 20:59:15-- http://deb.debian.org/debian/pool/main/h/hts-nim-tools/hts-nim-tools_0.2.1-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2242 (2.2K) [text/prs.lines.tag] Saving to: ‘hts-nim-tools_0.2.1-2.dsc’ 0K .. 100% 293M=0s 2024-12-03 20:59:15 (293 MB/s) - ‘hts-nim-tools_0.2.1-2.dsc’ saved [2242/2242] Tue Dec 3 20:59:15 UTC 2024 I: hts-nim-tools_0.2.1-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: hts-nim-tools Binary: hts-nim-tools Architecture: any Version: 0.2.1-2 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Nilesh Patra Homepage: https://github.com/brentp/hts-nim-tools Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/hts-nim-tools Vcs-Git: https://salsa.debian.org/med-team/hts-nim-tools.git Testsuite: autopkgtest Testsuite-Triggers: libhts-dev, nim-hts-examples Build-Depends: debhelper-compat (= 13), nim, nim-hts-dev, nim-docopt-dev, nim-unicodedb-dev, nim-unicodeplus-dev, nim-regex-dev, nim-kexpr-dev, nim-lapper-dev, help2man, libhts-dev Package-List: hts-nim-tools deb science optional arch=any Checksums-Sha1: 33b7d1ecb485e9d5df926f52a23d52632092fbe7 6803 hts-nim-tools_0.2.1.orig.tar.gz 0e16c7868300617691e5364d3ec18098345d5cc7 3588 hts-nim-tools_0.2.1-2.debian.tar.xz Checksums-Sha256: fdb2a2f867b45d568c26f1b416f487a47746872678f9b9d3179665c89e2330c7 6803 hts-nim-tools_0.2.1.orig.tar.gz fc3141c415a1745323936620b9e0f6cdd50bab5a4e560f1be87774bea029c95f 3588 hts-nim-tools_0.2.1-2.debian.tar.xz Files: 64901b12bc69b071403330341fe3ae52 6803 hts-nim-tools_0.2.1.orig.tar.gz 2f91dfc58ae8c1ae700b97352aad28a7 3588 hts-nim-tools_0.2.1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmdNfk4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtF/NQ/8ChJp4iTqeEvIQczIvWxu9KIN4ivy/98Y XH28Mftuu4lWB3Q8TeFCPwubYKBB+CJuFB/H2IniuPEMmrWZhsIEzArF9fWwjt/k Xn+wn9GlL9k8BnzUB2yKMXFpBIwZzFeaswtKuy8l5zi1jF9Q8e5vhLPwOrSAW+LM QrfPinSiZjthRmrW79/RZh7rD3gbVcYIh0YQn6IEvpxQBkf0SCUtSI/+oNC8na4O ZgRzp7oODBeUl61z1mr9fXap/H3zYpT3pCho+ZXp2AjGXANSbUKjA14lQx9GItBa P7VScsiDxl5HkPh4zIaSrXNLwz8YvRmv/JN10kuHSME1shn/WimfBvCwjoYHPSeT QHhKLJ63jF6ZcevrmWzzikRBz+BiX2/0XBUSD1eg2oLaSVyQQu8/upyTMBEUMA4P eZ/KrEzpOg4Am+lXGAx5aakMOrbxRFu0FEDoWFxWnpKbOIzHvthScgzxpSPBOZAj Ss1MldrgdACxidOanU07eYSdMCv66z4UaS+lVAG081A92KhnLeNKTn8nNXn+ytNd hNHmcpyED94dj7fIhqoaJf+4RQXX8fYr58xKiZ/LHv/5SvYsV4pE7MngJ3S1fkWu 2PSk8V6cGAzsM1VGuHL0bkFZH8OlegFbSNSlbf7FvT8UaM/rpIoDDsDdPF0wllIo y1IwlvOToPI= =vnTv -----END PGP SIGNATURE----- Tue Dec 3 20:59:15 UTC 2024 I: Checking whether the package is not for us Tue Dec 3 20:59:15 UTC 2024 I: Starting 1st build on remote node infom01-amd64.debian.net. Tue Dec 3 20:59:15 UTC 2024 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Tue Dec 3 20:59:58 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 3 08:59:17 -12 2024 I: pbuilder-time-stamp: 1733259557 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [hts-nim-tools_0.2.1-2.dsc] I: copying [./hts-nim-tools_0.2.1.orig.tar.gz] I: copying [./hts-nim-tools_0.2.1-2.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Dec 2 09:30:54 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./hts-nim-tools_0.2.1-2.dsc: no acceptable signature found dpkg-source: info: extracting hts-nim-tools in hts-nim-tools-0.2.1 dpkg-source: info: unpacking hts-nim-tools_0.2.1.orig.tar.gz dpkg-source: info: unpacking hts-nim-tools_0.2.1-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/165450/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='56186858115b4ddcb6c7eb352890028c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='165450' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.em7iTpwM/pbuilderrc_Hh6F --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.em7iTpwM/b1 --logfile b1/build.log hts-nim-tools_0.2.1-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-28-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/165450/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), nim, nim-hts-dev, nim-docopt-dev, nim-unicodedb-dev, nim-unicodeplus-dev, nim-regex-dev, nim-kexpr-dev, nim-lapper-dev, help2man, libhts-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19968 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on nim; however: Package nim is not installed. pbuilder-satisfydepends-dummy depends on nim-hts-dev; however: Package nim-hts-dev is not installed. pbuilder-satisfydepends-dummy depends on nim-docopt-dev; however: Package nim-docopt-dev is not installed. pbuilder-satisfydepends-dummy depends on nim-unicodedb-dev; however: Package nim-unicodedb-dev is not installed. pbuilder-satisfydepends-dummy depends on nim-unicodeplus-dev; however: Package nim-unicodeplus-dev is not installed. pbuilder-satisfydepends-dummy depends on nim-regex-dev; however: Package nim-regex-dev is not installed. pbuilder-satisfydepends-dummy depends on nim-kexpr-dev; however: Package nim-kexpr-dev is not installed. pbuilder-satisfydepends-dummy depends on nim-lapper-dev; however: Package nim-lapper-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} liblocale-gettext-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libpcre3{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} nim{a} nim-docopt-dev{a} nim-hts-dev{a} nim-kexpr-dev{a} nim-lapper-dev{a} nim-regex-dev{a} nim-unicodedb-dev{a} nim-unicodeplus-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl git krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 99 newly installed, 0 to remove and 0 not upgraded. Need to get 42.3 MB of archives. After unpacking 156 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2~rc1-1 [23.6 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.2~rc1-1 [55.3 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 25 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 37 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.21.3-3 [59.5 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.21.3-3 [41.7 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.21.3-3 [42.0 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.21.3-3 [53.5 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.21.3-3 [126 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b6 [316 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.11.0-1 [359 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.22.0-1 [598 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.8-2 [449 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.8-2 [449 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.7-2+b1 [123 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-2+b1 [208 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.19.0-3+b3 [98.9 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10-1+b1 [1317 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.8-2 [1391 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.21.3-3 [15.7 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.5.18+dfsg-3+b1 [303 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libnghttp3-dev amd64 1.6.0-2 [88.5 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.9.1-1 [23.1 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libngtcp2-dev amd64 1.9.1-1 [167 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.3.2-2 [2742 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.6+dfsg-1+b1 [365 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libcurl4-gnutls-dev amd64 8.11.0-1 [472 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.22-1 [55.8 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libhtscodecs2 amd64 1.6.1-1 [95.6 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libhts3t64 amd64 1.20+ds-2 [455 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.6.3-1+b1 [316 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libhts-dev amd64 1.20+ds-2 [1701 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libpcre3 amd64 2:8.39-15.1 [346 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 nim amd64 1.6.14-3 [4164 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 nim-unicodedb-dev all 0.9.0-2 [423 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 nim-unicodeplus-dev all 0.5.1-2 [5340 B] Get: 95 http://deb.debian.org/debian unstable/main amd64 nim-regex-dev all 0.17.0+ds-2 [41.2 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 nim-docopt-dev all 0.6.8-3 [10.6 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 nim-hts-dev all 0.3.25+ds-2 [36.4 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 nim-kexpr-dev all 0.0.2-3 [7976 B] Get: 99 http://deb.debian.org/debian unstable/main amd64 nim-lapper-dev all 0.1.7-5 [7356 B] Fetched 42.3 MB in 1s (62.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19968 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. 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Unpacking libgmp-dev:amd64 (2:6.3.0+dfsg-3) ... Selecting previously unselected package nettle-dev:amd64. Preparing to unpack .../66-nettle-dev_3.10-1+b1_amd64.deb ... Unpacking nettle-dev:amd64 (3.10-1+b1) ... Selecting previously unselected package libgnutls28-dev:amd64. Preparing to unpack .../67-libgnutls28-dev_3.8.8-2_amd64.deb ... Unpacking libgnutls28-dev:amd64 (3.8.8-2) ... Selecting previously unselected package libkrb5-dev:amd64. Preparing to unpack .../68-libkrb5-dev_1.21.3-3_amd64.deb ... Unpacking libkrb5-dev:amd64 (1.21.3-3) ... Selecting previously unselected package libldap-dev:amd64. Preparing to unpack .../69-libldap-dev_2.5.18+dfsg-3+b1_amd64.deb ... Unpacking libldap-dev:amd64 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libpkgconf3:amd64. Preparing to unpack .../70-libpkgconf3_1.8.1-4_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.1-4) ... Selecting previously unselected package pkgconf-bin. 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Selecting previously unselected package libpsl-dev:amd64. Preparing to unpack .../77-libpsl-dev_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl-dev:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../78-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package librtmp-dev:amd64. Preparing to unpack .../79-librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssl-dev:amd64. Preparing to unpack .../80-libssl-dev_3.3.2-2_amd64.deb ... Unpacking libssl-dev:amd64 (3.3.2-2) ... Selecting previously unselected package libssh2-1-dev:amd64. Preparing to unpack .../81-libssh2-1-dev_1.11.1-1_amd64.deb ... Unpacking libssh2-1-dev:amd64 (1.11.1-1) ... Selecting previously unselected package libzstd-dev:amd64. 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Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up libpcre3:amd64 (2:8.39-15.1) ... Setting up autotools-dev (20220109.1) ... Setting up libunbound8:amd64 (1.22.0-1) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-3) ... Setting up libgnutls-dane0t64:amd64 (3.8.8-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up comerr-dev:amd64 (2.1-1.47.2~rc1-1) ... Setting up libssl-dev:amd64 (3.3.2-2) ... Setting up autopoint (0.22.5-2) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libidn2-dev:amd64 (2.3.7-2+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up libnghttp3-dev:amd64 (1.6.0-2) ... Setting up liblzma-dev:amd64 (5.6.3-1+b1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... 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Not building database; man-db/auto-update is not 'true'. Setting up libgssrpc4t64:amd64 (1.21.3-3) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libhts3t64:amd64 (1.20+ds-2) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-3) ... Setting up libkdb5-10t64:amd64 (1.21.3-3) ... Setting up debhelper (13.20) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-3) ... Setting up krb5-multidev:amd64 (1.21.3-3) ... Setting up libkrb5-dev:amd64 (1.21.3-3) ... Setting up libcurl4-gnutls-dev:amd64 (8.11.0-1) ... Setting up libhts-dev:amd64 (1.20+ds-2) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/hts-nim-tools-0.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../hts-nim-tools_0.2.1-2_source.changes dpkg-buildpackage: info: source package hts-nim-tools dpkg-buildpackage: info: source version 0.2.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/hts-nim-tools-0.2.1' rm -f src/version src/vcf_check src/bam_filter src/hts_nim_tools src/count_reads src/copy_number_sampler rm -rf /build/reproducible-path/hts-nim-tools-0.2.1/nimcache rm -rf bin make[1]: Leaving directory '/build/reproducible-path/hts-nim-tools-0.2.1' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/hts-nim-tools.substvars debian/files rm -fr -- debian/hts-nim-tools/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/hts-nim-tools-0.2.1' #nim c --nimcache:/build/reproducible-path/hts-nim-tools-0.2.1/nimcache -p:/usr/share/nimble/unicodeplus -p:/usr/share/nimble/unicodedb -p:/usr/share/nimble/regex -p:/usr/share/nimble/docopt -p:/usr/share/nimble/hts src/vcf_check.nim #nim c --nimcache:/build/reproducible-path/hts-nim-tools-0.2.1/nimcache -p:/usr/share/nimble/unicodeplus -p:/usr/share/nimble/unicodedb -p:/usr/share/nimble/regex -p:/usr/share/nimble/docopt -p:/usr/share/nimble/kexpr -p:/usr/share/nimble/hts src/bam_filter.nim #nim c --nimcache:/build/reproducible-path/hts-nim-tools-0.2.1/nimcache -p:/usr/share/nimble/unicodeplus -p:/usr/share/nimble/unicodedb -p:/usr/share/nimble/regex -p:/usr/share/nimble/docopt -p:/usr/share/nimble/lapper -p:/usr/share/nimble/hts src/count_reads.nim #nim c --nimcache:/build/reproducible-path/hts-nim-tools-0.2.1/nimcache -p:/usr/share/nimble/unicodeplus -p:/usr/share/nimble/unicodedb -p:/usr/share/nimble/regex -p:/usr/share/nimble/docopt -p:/usr/share/nimble/lapper -p:/usr/lib/nim/pure -p:/usr/share/nimble/hts src/copy_number_sampler.nim nim c --passC:"-Wno-incompatible-pointer-types" --debuginfo:on --nimcache:/build/reproducible-path/hts-nim-tools-0.2.1/nimcache --out:bin/hts-nim-tools -p:/usr/share/nimble/unicodeplus -p:/usr/share/nimble/unicodedb -p:/usr/share/nimble/regex -p:/usr/share/nimble/docopt -p:/usr/share/nimble/lapper -p:/usr/share/nimble/kexpr -p:/usr/lib/nim/pure -p:/usr/share/nimble/hts src/hts_nim_tools.nim Hint: used config file '/etc/nim/nim.cfg' [Conf] Hint: used config file '/etc/nim/config.nims' [Conf] ......................................................................................................................................... /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(1, 8) Hint: duplicate import of 'os'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(1, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(2, 8) Hint: duplicate import of 'hts'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(2, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(3, 8) Hint: duplicate import of 'sequtils'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(3, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(4, 8) Hint: duplicate import of 'strutils'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(4, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(5, 8) Hint: duplicate import of 'tables'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(5, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(6, 8) Hint: duplicate import of 'algorithm'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(6, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(7, 8) Hint: duplicate import of 'docopt'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(7, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(8, 8) Hint: duplicate import of 'kexpr'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(8, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(10, 8) Hint: duplicate import of 'version'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(10, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(92, 19) template/generic instantiation of `tag` from here /usr/share/nimble/hts/hts/bam/auxtags.nim(53, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(96, 19) template/generic instantiation of `tag` from here /usr/share/nimble/hts/hts/bam/auxtags.nim(58, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(53, 13) Warning: implicit conversion to 'cstring' from a non-const location: $args[""]; this will become a compile time error in the future [CStringConv] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(94, 42) Warning: implicit conversion to 'cstring' from a non-const location: "tag_" & itag; this will become a compile time error in the future [CStringConv] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(98, 43) Warning: implicit conversion to 'cstring' from a non-const location: "tag_" & itag; this will become a compile time error in the future [CStringConv] . /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(1, 8) Hint: duplicate import of 'os'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(1, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(2, 8) Hint: duplicate import of 'hts'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(2, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(3, 8) Hint: duplicate import of 'docopt'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(7, 8) [DuplicateModuleImport] . /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(5, 8) Hint: duplicate import of 'strutils'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(4, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(6, 8) Hint: duplicate import of 'tables'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(5, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(7, 8) Hint: duplicate import of 'algorithm'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(6, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(9, 8) Hint: duplicate import of 'version'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(10, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(116, 13) Warning: implicit conversion to 'cstring' from a non-const location: $args[""]; this will become a compile time error in the future [CStringConv] . /build/reproducible-path/hts-nim-tools-0.2.1/src/vcf_check.nim(1, 8) Hint: duplicate import of 'os'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(1, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/vcf_check.nim(2, 8) Hint: duplicate import of 'hts'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(2, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/vcf_check.nim(3, 8) Hint: duplicate import of 'docopt'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(3, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/vcf_check.nim(4, 8) Hint: duplicate import of 'strutils'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(5, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/vcf_check.nim(6, 8) Hint: duplicate import of 'version'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(9, 8) [DuplicateModuleImport] . /build/reproducible-path/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(1, 8) Hint: duplicate import of 'os'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/vcf_check.nim(1, 8) [DuplicateModuleImport] .... /build/reproducible-path/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(3, 8) Hint: duplicate import of 'hts'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/vcf_check.nim(2, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(4, 8) Hint: duplicate import of 'docopt'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/vcf_check.nim(3, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(5, 8) Hint: duplicate import of 'lapper'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(4, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(6, 8) Hint: duplicate import of 'strutils'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/vcf_check.nim(4, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(7, 8) Hint: duplicate import of 'tables'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(6, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(8, 8) Hint: duplicate import of 'algorithm'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(7, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(10, 8) Hint: duplicate import of 'version'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/vcf_check.nim(6, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(130, 13) Warning: implicit conversion to 'cstring' from a non-const location: $args[""]; this will become a compile time error in the future [CStringConv] CC: kexpr-c CC: ../../../../usr/lib/nim/lib/std/private/digitsutils.nim CC: ../../../../usr/lib/nim/lib/system/assertions.nim CC: ../../../../usr/lib/nim/lib/system/formatfloat.nim CC: ../../../../usr/lib/nim/lib/system/dollars.nim CC: ../../../../usr/lib/nim/lib/system/io.nim CC: ../../../../usr/lib/nim/lib/system.nim CC: ../../../../usr/lib/nim/lib/pure/parseutils.nim CC: ../../../../usr/lib/nim/lib/pure/bitops.nim CC: ../../../../usr/lib/nim/lib/pure/math.nim CC: ../../../../usr/lib/nim/lib/pure/algorithm.nim CC: ../../../../usr/lib/nim/lib/pure/unicode.nim CC: ../../../../usr/lib/nim/lib/pure/strutils.nim CC: ../../../../usr/lib/nim/lib/pure/times.nim CC: ../../../../usr/lib/nim/lib/pure/os.nim CC: ../../../../usr/share/nimble/hts/hts/private/hts_concat.nim CC: ../../../../usr/lib/nim/lib/pure/strformat.nim CC: ../../../../usr/share/nimble/hts/hts/bam.nim CC: ../../../../usr/lib/nim/lib/pure/collections/sequtils.nim CC: ../../../../usr/share/nimble/hts/hts/vcf.nim CC: ../../../../usr/share/nimble/hts/hts.nim CC: ../../../../usr/lib/nim/lib/pure/hashes.nim CC: ../../../../usr/lib/nim/lib/pure/collections/tables.nim CC: ../../../../usr/lib/nim/lib/pure/collections/sets.nim CC: ../../../../usr/share/nimble/unicodedb/unicodedb/properties_data.nim CC: ../../../../usr/share/nimble/unicodedb/unicodedb/properties.nim CC: ../../../../usr/share/nimble/regex/regex/common.nim CC: ../../../../usr/share/nimble/regex/regex/nodetype.nim CC: ../../../../usr/share/nimble/regex/regex/exptransformation.nim CC: ../../../../usr/share/nimble/regex/regex/nfa.nim CC: ../../../../usr/share/nimble/unicodedb/unicodedb/types_data.nim CC: ../../../../usr/share/nimble/unicodedb/unicodedb/types.nim CC: ../../../../usr/share/nimble/unicodeplus/unicodeplus.nim CC: ../../../../usr/share/nimble/regex/regex/nodematch.nim CC: ../../../../usr/share/nimble/regex/regex/litopt.nim CC: ../../../../usr/share/nimble/regex/regex/nfatype.nim CC: ../../../../usr/share/nimble/regex/regex/nfafindall.nim CC: ../../../../usr/share/nimble/regex/regex/nfamatch.nim CC: ../../../../usr/share/nimble/docopt/docopt/util.nim CC: ../../../../usr/share/nimble/docopt/docopt.nim CC: ../../../../usr/share/nimble/kexpr/kexpr.nim CC: version.nim CC: ../../../../usr/share/nimble/lapper/lapper.nim CC: ../../../../usr/lib/nim/lib/std/sysrand.nim CC: ../../../../usr/lib/nim/lib/pure/random.nim CC: hts_nim_tools.nim Hint: [Link] Hint: gc: refc; opt: none (DEBUG BUILD, `-d:release` generates faster code) 88347 lines; 2.457s; 181.168MiB peakmem; proj: /build/reproducible-path/hts-nim-tools-0.2.1/src/hts_nim_tools.nim; out: /build/reproducible-path/hts-nim-tools-0.2.1/bin/hts-nim-tools [SuccessX] help2man --no-info --no-discard-stderr --help-option="-h" ./bin/hts-nim-tools > debian/hts-nim-tools.1 make[1]: Leaving directory '/build/reproducible-path/hts-nim-tools-0.2.1' create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/hts-nim-tools.substvars rm -fr -- debian/.debhelper/generated/hts-nim-tools/ debian/hts-nim-tools/ debian/tmp/ dh_installdirs install -m0755 -d debian/hts-nim-tools/usr/bin dh_auto_install --destdir=debian/hts-nim-tools/ install -m0755 -d /build/reproducible-path/hts-nim-tools-0.2.1/debian/hts-nim-tools dh_install install -m0755 -d debian/hts-nim-tools/usr/bin/ cp --reflink=auto -a ./bin/hts-nim-tools debian/hts-nim-tools/usr/bin// dh_installdocs install -m0755 -d debian/hts-nim-tools/usr/share/doc/hts-nim-tools install -p -m0644 debian/copyright debian/hts-nim-tools/usr/share/doc/hts-nim-tools/copyright dh_installchangelogs install -m0755 -d debian/hts-nim-tools/usr/share/doc/hts-nim-tools install -p -m0644 debian/.debhelper/generated/hts-nim-tools/dh_installchangelogs.dch.trimmed debian/hts-nim-tools/usr/share/doc/hts-nim-tools/changelog.Debian dh_installman install -m0755 -d debian/hts-nim-tools/usr/share/man/man1/ install -p -m0644 ./debian/hts-nim-tools.1 debian/hts-nim-tools/usr/share/man/man1/hts-nim-tools.1 man-recode --to-code UTF-8 --suffix .dh-new debian/hts-nim-tools/usr/share/man/man1/hts-nim-tools.1 mv debian/hts-nim-tools/usr/share/man/man1/hts-nim-tools.1.dh-new debian/hts-nim-tools/usr/share/man/man1/hts-nim-tools.1 chmod 0644 -- debian/hts-nim-tools/usr/share/man/man1/hts-nim-tools.1 dh_lintian install -m0755 -d debian/hts-nim-tools/usr/share/lintian/overrides install -p -m0644 debian/lintian-overrides debian/hts-nim-tools/usr/share/lintian/overrides/hts-nim-tools dh_perl dh_link install -m0755 -d debian/hts-nim-tools/usr/bin rm -f debian/hts-nim-tools/usr/bin/hts_nim_tools ln -s hts-nim-tools debian/hts-nim-tools/usr/bin/hts_nim_tools dh_strip_nondeterminism dh_compress cd debian/hts-nim-tools chmod a-x usr/share/doc/hts-nim-tools/changelog.Debian usr/share/man/man1/hts-nim-tools.1 gzip -9nf usr/share/doc/hts-nim-tools/changelog.Debian usr/share/man/man1/hts-nim-tools.1 cd '/build/reproducible-path/hts-nim-tools-0.2.1' dh_fixperms find debian/hts-nim-tools ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/hts-nim-tools/usr/share/doc -type f -a -true -a ! -regex 'debian/hts-nim-tools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/hts-nim-tools/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/hts-nim-tools/usr/share/man debian/hts-nim-tools/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/hts-nim-tools -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/hts-nim-tools/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing debian/rules override_dh_dwz make[1]: Entering directory '/build/reproducible-path/hts-nim-tools-0.2.1' echo "I: not executing dwz, which fails because of Unknown DWARF DW_OP_0" I: not executing dwz, which fails because of Unknown DWARF DW_OP_0 make[1]: Leaving directory '/build/reproducible-path/hts-nim-tools-0.2.1' dh_strip -a install -m0755 -d debian/.debhelper/hts-nim-tools/dbgsym-root/usr/lib/debug/.build-id/95 objcopy --only-keep-debug --compress-debug-sections debian/hts-nim-tools/usr/bin/hts-nim-tools debian/.debhelper/hts-nim-tools/dbgsym-root/usr/lib/debug/.build-id/95/66f3128fc1ff11f486780618a03a5704f5f368.debug chmod 0644 -- debian/.debhelper/hts-nim-tools/dbgsym-root/usr/lib/debug/.build-id/95/66f3128fc1ff11f486780618a03a5704f5f368.debug strip --remove-section=.comment --remove-section=.note debian/hts-nim-tools/usr/bin/hts-nim-tools objcopy --add-gnu-debuglink debian/.debhelper/hts-nim-tools/dbgsym-root/usr/lib/debug/.build-id/95/66f3128fc1ff11f486780618a03a5704f5f368.debug debian/hts-nim-tools/usr/bin/hts-nim-tools install -m0755 -d debian/.debhelper/hts-nim-tools/dbgsym-root/usr/share/doc ln -s hts-nim-tools debian/.debhelper/hts-nim-tools/dbgsym-root/usr/share/doc/hts-nim-tools-dbgsym install -m0755 -d debian/.debhelper/hts-nim-tools dh_makeshlibs -a rm -f debian/hts-nim-tools/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/hts-nim-tools/DEBIAN dpkg-shlibdeps -Tdebian/hts-nim-tools.substvars debian/hts-nim-tools/usr/bin/hts-nim-tools dh_installdeb install -m0755 -d debian/hts-nim-tools/DEBIAN dh_gencontrol install -m0755 -d debian/hts-nim-tools/DEBIAN echo misc:Depends= >> debian/hts-nim-tools.substvars echo misc:Pre-Depends= >> debian/hts-nim-tools.substvars install -m0755 -d debian/.debhelper/hts-nim-tools/dbgsym-root/DEBIAN dpkg-gencontrol -phts-nim-tools -ldebian/changelog -Tdebian/hts-nim-tools.substvars -cdebian/control -Pdebian/.debhelper/hts-nim-tools/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=hts-nim-tools-dbgsym "-DDepends=hts-nim-tools (= \${binary:Version})" "-DDescription=debug symbols for hts-nim-tools" -DBuild-Ids=9566f3128fc1ff11f486780618a03a5704f5f368 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/hts-nim-tools/dbgsym-root/DEBIAN/control dpkg-gencontrol -phts-nim-tools -ldebian/changelog -Tdebian/hts-nim-tools.substvars -cdebian/control -Pdebian/hts-nim-tools chmod 0644 -- debian/hts-nim-tools/DEBIAN/control dh_md5sums install -m0755 -d debian/hts-nim-tools/DEBIAN cd debian/hts-nim-tools >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/hts-nim-tools/DEBIAN/md5sums install -m0755 -d debian/.debhelper/hts-nim-tools/dbgsym-root/DEBIAN cd debian/.debhelper/hts-nim-tools/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/hts-nim-tools/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/hts-nim-tools .. dpkg-deb --root-owner-group --build debian/.debhelper/hts-nim-tools/dbgsym-root .. dpkg-deb: building package 'hts-nim-tools' in '../hts-nim-tools_0.2.1-2_amd64.deb'. dpkg-deb: building package 'hts-nim-tools-dbgsym' in '../hts-nim-tools-dbgsym_0.2.1-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../hts-nim-tools_0.2.1-2_amd64.buildinfo dpkg-genchanges --build=binary -O../hts-nim-tools_0.2.1-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/165450 and its subdirectories I: Current time: Tue Dec 3 08:59:57 -12 2024 I: pbuilder-time-stamp: 1733259597 Tue Dec 3 20:59:59 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Tue Dec 3 20:59:59 UTC 2024 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Tue Dec 3 21:02:09 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. Tue Dec 3 21:02:09 UTC 2024 I: hts-nim-tools_0.2.1-2_amd64.changes: Format: 1.8 Date: Mon, 02 Dec 2024 10:06:01 +0100 Source: hts-nim-tools Binary: hts-nim-tools hts-nim-tools-dbgsym Architecture: amd64 Version: 0.2.1-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: hts-nim-tools - tools biological sequences: bam-filter, count-reads, vcf-check Closes: 1075071 Changes: hts-nim-tools (0.2.1-2) unstable; urgency=medium . * Team upload. * Ignore incompatible pointer types Closes: #1075071 * Standards-Version: 4.7.0 (routine-update) Checksums-Sha1: 1abe5b33885065901531d208b79a0501dd66b5d4 654752 hts-nim-tools-dbgsym_0.2.1-2_amd64.deb f21bc238c4cdf13c53c4c5e39325ab47fb37ffcc 7453 hts-nim-tools_0.2.1-2_amd64.buildinfo 590dabf4fddb7f1c954940894063164d1a038cbe 166444 hts-nim-tools_0.2.1-2_amd64.deb Checksums-Sha256: 4621565db0843a8af67792118a87e18dedcd274b8e05b56e041f3e0756316916 654752 hts-nim-tools-dbgsym_0.2.1-2_amd64.deb 0e158fde5b1acb1ae6b83c66ac5abe3dd4402033cea7101258fcf75fe35bbe14 7453 hts-nim-tools_0.2.1-2_amd64.buildinfo e27ef74f4e515a0bad83595b2bbcccc5e0209518072e7f7971f1a8ca4496bd0b 166444 hts-nim-tools_0.2.1-2_amd64.deb Files: 3ad910db89ecb8fa8f252accbc8c8c80 654752 debug optional hts-nim-tools-dbgsym_0.2.1-2_amd64.deb d00dd868477a5e6a9613147dfe20d24c 7453 science optional hts-nim-tools_0.2.1-2_amd64.buildinfo b99b18e9227213d48753182db387100d 166444 science optional hts-nim-tools_0.2.1-2_amd64.deb Tue Dec 3 21:02:10 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_33-40114.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.em7iTpwM/hts-nim-tools_0.2.1-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.em7iTpwM/hts-nim-tools_0.2.1-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.em7iTpwM/hts-nim-tools_0.2.1-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.em7iTpwM/b1/hts-nim-tools_0.2.1-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.em7iTpwM/b2/hts-nim-tools_0.2.1-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.351s) 0.351s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.023s) 0.023s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 652ms CPU time consumed: 653ms Tue Dec 3 21:02:11 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Tue Dec 3 21:02:11 UTC 2024 I: hts-nim-tools from unstable built successfully and reproducibly on amd64. Tue Dec 3 21:02:12 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Dec 3 21:02:12 UTC 2024 I: Submitting 12K b1/hts-nim-tools_0.2.1-2_amd64.buildinfo.asc Tue Dec 3 21:02:13 UTC 2024 I: Submitting 12K b2/hts-nim-tools_0.2.1-2_amd64.buildinfo.asc Tue Dec 3 21:02:14 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Dec 3 21:02:14 UTC 2024 I: Done submitting .buildinfo files. Tue Dec 3 21:02:14 UTC 2024 I: Removing signed hts-nim-tools_0.2.1-2_amd64.buildinfo.asc files: removed './b1/hts-nim-tools_0.2.1-2_amd64.buildinfo.asc' removed './b2/hts-nim-tools_0.2.1-2_amd64.buildinfo.asc'