Thu Dec 19 00:08:22 UTC 2024 I: starting to build grabix/unstable/amd64 on jenkins on '2024-12-19 00:08' Thu Dec 19 00:08:22 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_38/39577/console.log Thu Dec 19 00:08:22 UTC 2024 I: Downloading source for unstable/grabix=0.1.7-5 --2024-12-19 00:08:22-- http://deb.debian.org/debian/pool/main/g/grabix/grabix_0.1.7-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2019 (2.0K) [text/prs.lines.tag] Saving to: ‘grabix_0.1.7-5.dsc’ 0K . 100% 305M=0s 2024-12-19 00:08:22 (305 MB/s) - ‘grabix_0.1.7-5.dsc’ saved [2019/2019] Thu Dec 19 00:08:22 UTC 2024 I: grabix_0.1.7-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: grabix Binary: grabix Architecture: any Version: 0.1.7-5 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/arq5x/grabix Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/grabix Vcs-Git: https://salsa.debian.org/med-team/grabix.git Testsuite: autopkgtest Testsuite-Triggers: less, tabix, time Build-Depends: debhelper-compat (= 13), zlib1g-dev, python3, tabix, time, less Package-List: grabix deb science optional arch=any Checksums-Sha1: 801f2c288c7889d46f8a02f3d2b5a279a734e9c5 632258 grabix_0.1.7.orig.tar.gz 0b8bc9e1990e2d0324739215220bf4a4d47cfe68 17324 grabix_0.1.7-5.debian.tar.xz Checksums-Sha256: d90735c55c0985a4d751858d7ce9e36ad534fff4103257e8e981e34d5c915b28 632258 grabix_0.1.7.orig.tar.gz 8674aeae3c602aca5ff2edbf23fce7b2037b6e882241d5ab35f900141dfe66d6 17324 grabix_0.1.7-5.debian.tar.xz Files: abbac977d3c61b1892b30810d2f17281 632258 grabix_0.1.7.orig.tar.gz d2550205d4e33442f989ef54e7f84478 17324 grabix_0.1.7-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmdi83cRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtF4rg//dwuu9IJqoMGdQt1DqcUw5PmMGVktYU4q PxbMFvIzNLUlp1K+qx4xowJ1lGaoALtmfuZklSbaIuyLTcWSf9o6hOZDCh/cC1r1 NWUeyS4x6W4yFQ/7y7ifHq9ahfXw//lfCwOagmHWGdhrGrWx/QxSU2ppNoBhH7kU H+vbvACmn1InXmkSYLF8mmV3OF1MzMRgiKh0EO532YJAX6CHsiXPvMCEkhbR1BaL yRfhe6pXLBhR+GZ8pZ6CbuaK5+ZTB4z3d/wDsaLqQMDcI/Ku5nnBDBj/bjh/idsj /oTdfAIyWga6zMBhqvbnAm22zIAB5DNQUFcgJOWSk5V2MRsYy2ISs0D0XMrdHVD8 x5CWyusKKGtao2d9zd3NtSJj0meFuZVGBssX2iQP8JiP2YatdRH8AqweTwZBY4lO e3fMOtBayaRuGj6z7ilk64BsynKpxZnks6IQQcNAr1VoMzaJNWYhyTkUSouUVqRh iIjbkQQmxBB1y5DSSsbc4gz8r9+xH9xiYoedMUlaBoSz00D0ppYh29AbVkyR5TTp 9CcPtDvnnIsDqRk3hXlzoxW8FMGudr8L4NwBKtwvArAlq4Nz31XE8hL3AQxpfcCH 0w8m0c5su3nyGuPQdVUx7qj+zAwkkzNiHPfATdZNPPQYMe1y4tnJyT9YIh5gmcEG tZ2hqoLgeC8= =lnMv -----END PGP SIGNATURE----- Thu Dec 19 00:08:22 UTC 2024 I: Checking whether the package is not for us Thu Dec 19 00:08:22 UTC 2024 I: Starting 1st build on remote node infom02-amd64.debian.net. Thu Dec 19 00:08:22 UTC 2024 I: Preparing to do remote build '1' on infom02-amd64.debian.net. Thu Dec 19 00:09:52 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jan 20 18:31:25 -12 2026 I: pbuilder-time-stamp: 1768977085 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [grabix_0.1.7-5.dsc] I: copying [./grabix_0.1.7.orig.tar.gz] I: copying [./grabix_0.1.7-5.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Dec 18 16:08:23 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./grabix_0.1.7-5.dsc: no acceptable signature found dpkg-source: info: extracting grabix in grabix-0.1.7 dpkg-source: info: unpacking grabix_0.1.7.orig.tar.gz dpkg-source: info: unpacking grabix_0.1.7-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_assignment_of_char_to_pointer.patch dpkg-source: info: applying Hardening.patch dpkg-source: info: applying warnings.patch dpkg-source: info: applying introduceLTO.patch dpkg-source: info: applying fix_test.patch dpkg-source: info: applying 2to3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/557731/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='94c7317b1c3844429c097968cb112945' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='557731' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iVNCttPw/pbuilderrc_ZbKQ --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iVNCttPw/b1 --logfile b1/build.log grabix_0.1.7-5.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom02-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/557731/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, python3, tabix, time, less dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19967 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on tabix; however: Package tabix is not installed. pbuilder-satisfydepends-dummy depends on time; however: Package time is not installed. pbuilder-satisfydepends-dummy depends on less; however: Package less is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} less{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhtscodecs2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tabix{a} time{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 57 newly installed, 0 to remove and 0 not upgraded. Need to get 28.7 MB of archives. After unpacking 109 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.8-3 [817 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.8-3 [2162 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-4 [256 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2~rc1-2 [23.8 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.8-3 [1969 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.8-3 [677 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.7-1 [9712 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 less amd64 643-1 [148 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-3 [200 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-6 [1184 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-12 [92.0 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-3 [723 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.22 [90.5 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 45 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-3 [1600 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.22 [919 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libhtscodecs2 amd64 1.6.1-1 [95.6 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 tabix amd64 1.20+ds-2 [486 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 time amd64 1.9-0.2 [50.8 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 28.7 MB in 0s (98.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19967 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.8-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-3_amd64.deb ... Unpacking python3.12-minimal (3.12.8-3) ... Setting up libpython3.12-minimal:amd64 (3.12.8-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20287 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_amd64.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.2~rc1-2_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2~rc1-2) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.8-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.8-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.8-3_amd64.deb ... Unpacking python3.12 (3.12.8-3) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up libdebhelper-perl (13.22) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libdeflate0:amd64 (1.22-1) ... Setting up less (643-1) ... Setting up gettext-base (0.22.5-3) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:amd64 (1.47.2~rc1-2) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Jan 21 06:32:14 UTC 2026. Universal Time is now: Wed Jan 21 06:32:14 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-3) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up tabix (1.20+ds-2) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-3) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-6) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:amd64 (3.12.8-3) ... Setting up python3.12 (3.12.8-3) ... Setting up debhelper (13.22) ... Setting up libpython3-stdlib:amd64 (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/grabix-0.1.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../grabix_0.1.7-5_source.changes dpkg-buildpackage: info: source package grabix dpkg-buildpackage: info: source version 0.1.7-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/grabix-0.1.7' rm -f grabix make[1]: Leaving directory '/build/reproducible-path/grabix-0.1.7' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/grabix-0.1.7' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/grabix-0.1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -flto -o grabix grabix_main.cpp grabix.cpp bgzf.c -Wl,-z,relro -Wl,-z,now -lstdc++ -lz -Wl,-flto cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ make[1]: Leaving directory '/build/reproducible-path/grabix-0.1.7' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/grabix-0.1.7' PATH=/build/reproducible-path/grabix-0.1.7:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games sh debian/testdata/test.sh indexing 0.13user 0.00system 0:00.14elapsed 99%CPU (0avgtext+0avgdata 3828maxresident)k 0inputs+8outputs (0major+179minor)pagefaults 0swaps indexed checking indexing at bounds: .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. PASS FAIL last record OK ./debian/testdata/test.exac.vcf OK ./debian/testdata/test.PLs.vcf OK ./debian/testdata/test.cosmic.vcf OK ./debian/testdata/test.fusions.vcf OK ./debian/testdata/test.clinvar.vcf rm -f test.cnt.gz test.cnt.gz.gbi make[1]: Leaving directory '/build/reproducible-path/grabix-0.1.7' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/grabix/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'grabix' in '../grabix_0.1.7-5_amd64.deb'. dpkg-deb: building package 'grabix-dbgsym' in '../grabix-dbgsym_0.1.7-5_amd64.deb'. dpkg-genbuildinfo --build=binary -O../grabix_0.1.7-5_amd64.buildinfo dpkg-genchanges --build=binary -O../grabix_0.1.7-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/557731 and its subdirectories I: Current time: Tue Jan 20 18:32:52 -12 2026 I: pbuilder-time-stamp: 1768977172 Thu Dec 19 00:09:53 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom01-amd64.debian.net. Thu Dec 19 00:09:53 UTC 2024 I: Preparing to do remote build '2' on infom01-amd64.debian.net. Thu Dec 19 00:10:56 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. Thu Dec 19 00:10:57 UTC 2024 I: grabix_0.1.7-5_amd64.changes: Format: 1.8 Date: Wed, 18 Dec 2024 17:05:45 +0100 Source: grabix Binary: grabix grabix-dbgsym Architecture: amd64 Version: 0.1.7-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: grabix - wee tool for random access into BGZF files Closes: 1045023 Changes: grabix (0.1.7-5) unstable; urgency=medium . * Team upload * Cleanup after testing Closes: #1045023 * Standards-Version: 4.7.0 (routine-update) Checksums-Sha1: 2d34313a6193943c6b442e3833aad07988305b5b 81256 grabix-dbgsym_0.1.7-5_amd64.deb fe30f84ff23a3c29b4d37d474ea3be51d0873ccc 5880 grabix_0.1.7-5_amd64.buildinfo 2181d3dc394f27e8f10ace1081d4ddf9b6168862 15208 grabix_0.1.7-5_amd64.deb Checksums-Sha256: 5ce2268e508b716cb58d29f50e091e3ff19a1e202b0e5b0ecd89ad2a01d2c0d8 81256 grabix-dbgsym_0.1.7-5_amd64.deb 81e8dd6e581796f52fe882802250e60131b4d7816ebbc72549077d2b5cc0175d 5880 grabix_0.1.7-5_amd64.buildinfo af5a0f46dae97cdacba44600aaed5d3e2f99834f14cf4a6e00131acdc394c6d4 15208 grabix_0.1.7-5_amd64.deb Files: 39729b4efaf8123c7db1a9cb2b85d4aa 81256 debug optional grabix-dbgsym_0.1.7-5_amd64.deb d22997d8444c3c89c49b83f725b25897 5880 science optional grabix_0.1.7-5_amd64.buildinfo 2ffc5fd6bd081c3794008df26002684e 15208 science optional grabix_0.1.7-5_amd64.deb Thu Dec 19 00:10:58 UTC 2024 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_38-39577.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.iVNCttPw/grabix_0.1.7-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.iVNCttPw/grabix_0.1.7-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.iVNCttPw/grabix_0.1.7-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.iVNCttPw/b1/grabix_0.1.7-5_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.iVNCttPw/b2/grabix_0.1.7-5_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.347s) 0.347s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.016s) 0.016s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 669ms CPU time consumed: 670ms Thu Dec 19 00:10:59 UTC 2024 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Thu Dec 19 00:10:59 UTC 2024 I: grabix from unstable built successfully and reproducibly on amd64. Thu Dec 19 00:11:00 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Dec 19 00:11:00 UTC 2024 I: Submitting 8.0K b1/grabix_0.1.7-5_amd64.buildinfo.asc Thu Dec 19 00:11:01 UTC 2024 I: Submitting 8.0K b2/grabix_0.1.7-5_amd64.buildinfo.asc Thu Dec 19 00:11:02 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Dec 19 00:11:02 UTC 2024 I: Done submitting .buildinfo files. Thu Dec 19 00:11:02 UTC 2024 I: Removing signed grabix_0.1.7-5_amd64.buildinfo.asc files: removed './b1/grabix_0.1.7-5_amd64.buildinfo.asc' removed './b2/grabix_0.1.7-5_amd64.buildinfo.asc'