Sun Dec 15 00:08:45 UTC 2024 I: starting to build fermi-lite/unstable/amd64 on jenkins on '2024-12-15 00:08' Sun Dec 15 00:08:45 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_5/26215/console.log Sun Dec 15 00:08:45 UTC 2024 I: Downloading source for unstable/fermi-lite=0.1+git20221215.85f159e-1 --2024-12-15 00:08:45-- http://deb.debian.org/debian/pool/main/f/fermi-lite/fermi-lite_0.1%2bgit20221215.85f159e-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2288 (2.2K) [text/prs.lines.tag] Saving to: ‘fermi-lite_0.1+git20221215.85f159e-1.dsc’ 0K .. 100% 374M=0s 2024-12-15 00:08:45 (374 MB/s) - ‘fermi-lite_0.1+git20221215.85f159e-1.dsc’ saved [2288/2288] Sun Dec 15 00:08:45 UTC 2024 I: fermi-lite_0.1+git20221215.85f159e-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: fermi-lite Binary: fml-asm, libfml0, libfml-dev Architecture: any Version: 0.1+git20221215.85f159e-1 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss Homepage: https://github.com/lh3/fermi-lite Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/fermi-lite Vcs-Git: https://salsa.debian.org/med-team/fermi-lite.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), d-shlibs, zlib1g-dev, libsimde-dev, help2man Package-List: fml-asm deb science optional arch=any libfml-dev deb libdevel optional arch=any libfml0 deb libs optional arch=any Checksums-Sha1: fe2c5e7bf2857f9a5846e50fc8d1bf2503410206 238336 fermi-lite_0.1+git20221215.85f159e.orig.tar.xz 1dbefc67a60df9f84951f59b2a1f610a5fc727de 11360 fermi-lite_0.1+git20221215.85f159e-1.debian.tar.xz Checksums-Sha256: ca8667953776df4344ec4bb541580b3a51903f1cd758c38530c8cbec7a1062fc 238336 fermi-lite_0.1+git20221215.85f159e.orig.tar.xz b13c144d8311ac5dc650a4fecd220bd8a7b429a18b93105b6ad083bd7770e194 11360 fermi-lite_0.1+git20221215.85f159e-1.debian.tar.xz Files: fba517e9a6d94233e990d85f94c9dad0 238336 fermi-lite_0.1+git20221215.85f159e.orig.tar.xz 905e9532b6535c1e279c9cab9e0f9785 11360 fermi-lite_0.1+git20221215.85f159e-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmdd03sRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtF/tg/+MDDeef4jobAE8M9u/LSSKuSFxImaTyTo 6rNXPkiVJfBpUhpzVRCEpsl+lXfBbMfqkCkoerdlnk5uqXaL+BVguzHUCH5owwGh ciy+mH1YgquQfNCjSDPqPjrA8+rT7JflpUcXBi8QszUrLyOkcHcHcMmhUMwV69kR odB6FmIWNmTheYrsU932Vy1EiZYoDO5ZaRATJJWrflBhN0VAyYE2NGwDLH73L65e aq3K0UxE5cAH5P0uzfb23nZ1MRu3TNcj4jTEgo+koHn+EefsEuZpiKVVjkn0UIdt S5GbQMzq6JFE4E/NuYdga4mLuiSGvuTlxM17uoaqrDmHhg90u7yJ42ec8zHnlYna mIQeKCW6A9VV3Oz/svCPa8D7KChd++zvXrd3bA9W3PC6DKGEYOFGEo+E85lrmUGa NG2Xdp4xC0TFhgRAKQoFmEV5i3F69Mo5OAtlbo1Uynzbhtw0bswoA3jGyQkvb52p XjI67mWwWitBVl9W0hmbrNWF2vlLQbdr36npg8rsZgRf6k77h0XZiLdC6mQ9SM+m XA7gCHdpJmHkOqmZ5E1a6TYkPr+zH8kpVg4DTJKTnIq/wKhpuiA/nOjSTsWU4Mxr TxY9iCmw1exUwIcQvBAPLxV3mSscsin5l0urtEAJwjkkwAx6oAl6/Gsf/0nnsp7M NUheR6+AR80= =Ymok -----END PGP SIGNATURE----- Sun Dec 15 00:08:45 UTC 2024 I: Checking whether the package is not for us Sun Dec 15 00:08:45 UTC 2024 I: Starting 1st build on remote node ionos11-amd64.debian.net. Sun Dec 15 00:08:45 UTC 2024 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Sun Dec 15 00:12:20 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Dec 14 12:08:48 -12 2024 I: pbuilder-time-stamp: 1734221328 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fermi-lite_0.1+git20221215.85f159e-1.dsc] I: copying [./fermi-lite_0.1+git20221215.85f159e.orig.tar.xz] I: copying [./fermi-lite_0.1+git20221215.85f159e-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Dec 14 18:50:35 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fermi-lite_0.1+git20221215.85f159e-1.dsc: no acceptable signature found dpkg-source: info: extracting fermi-lite in fermi-lite-0.1+git20221215.85f159e dpkg-source: info: unpacking fermi-lite_0.1+git20221215.85f159e.orig.tar.xz dpkg-source: info: unpacking fermi-lite_0.1+git20221215.85f159e-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying make_shared_lib dpkg-source: info: applying hardening dpkg-source: info: applying rename_bseq1_t.patch dpkg-source: info: applying bcf_seqlib.patch dpkg-source: info: applying simde dpkg-source: info: applying ensure-signed-comparison.patch dpkg-source: info: applying sync_instead_of_atomic I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1417508/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='62e36962b59047499f9b5be0fb9baf31' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1417508' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GdOwgkHz/pbuilderrc_oJVQ --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GdOwgkHz/b1 --logfile b1/build.log fermi-lite_0.1+git20221215.85f159e-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1417508/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, zlib1g-dev, libsimde-dev, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsimde-dev{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 21.4 MB of archives. After unpacking 86.1 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-6 [1184 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-12 [92.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 d-shlibs all 0.108 [11.0 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 24 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libsimde-dev all 0.8.2-2 [467 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 21.4 MB in 1s (22.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-6_amd64.deb ... Unpacking groff-base (1.23.0-6) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40.2-12_amd64.deb ... Unpacking bsdextrautils (2.40.2-12) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../09-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../16-d-shlibs_0.108_all.deb ... Unpacking d-shlibs (0.108) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../23-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../25-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../26-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package help2man. Preparing to unpack .../31-help2man_1.49.3_amd64.deb ... Unpacking help2man (1.49.3) ... Selecting previously unselected package libsimde-dev. Preparing to unpack .../32-libsimde-dev_0.8.2-2_all.deb ... Unpacking libsimde-dev (0.8.2-2) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../33-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libsimde-dev (0.8.2-2) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-12) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up d-shlibs (0.108) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-6) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/fermi-lite-0.1+git20221215.85f159e/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fermi-lite_0.1+git20221215.85f159e-1_source.changes dpkg-buildpackage: info: source package fermi-lite dpkg-buildpackage: info: source version 0.1+git20221215.85f159e-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e' dh_auto_clean make -j20 clean make[2]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e' rm -fr gmon.out *.o ext/*.o a.out fml-asm *~ *.a *.dSYM session* make[2]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e' rm -f fml-asm.1 make[1]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j20 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kthread.o kthread.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc.o misc.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bseq.o bseq.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o htab.o htab.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bfc.o bfc.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rle.o rle.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rope.o rope.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mrope.o mrope.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rld0.o rld0.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o unitig.o unitig.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mag.o mag.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bubble.o bubble.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ksw.o ksw.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o example.o example.c misc.c: In function 'fml_utg_print': misc.c:217:19: warning: variable 'l' set but not used [-Wunused-but-set-variable] 217 | int i, j, l; | ^ bfc.c: In function 'bfc_kmer_insert': bfc.c:54:24: warning: variable 'hash' set but not used [-Wunused-but-set-variable] 54 | uint64_t y[2], hash; | ^~~~ rld0.c: In function 'rld_restore': rld0.c:298:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 298 | fread(e->z[i], 8, RLD_LSIZE, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rld0.c:299:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 299 | fread(e->z[i], 8, k, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ rld0.c:301:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 301 | fread(e->frame, 8 * e->asize1, e->n_frames, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rld0.c: In function 'rld_restore_header': rld0.c:256:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 256 | fread(magic, 1, 4, fp); | ^~~~~~~~~~~~~~~~~~~~~~ rld0.c:258:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 258 | fread(&x, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~ rld0.c:260:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 260 | fread(a, 8, 3, fp); | ^~~~~~~~~~~~~~~~~~ rld0.c:262:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 262 | fread(e->mcnt + 1, 8, e->asize, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unitig.c: In function 'unitig1': unitig.c:325:23: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 325 | int seed_len, ret, is_loop, contained; | ^~~ ar -csru libfml.a kthread.o misc.o bseq.o htab.o bfc.o rle.o rope.o mrope.o rld0.o unitig.o mag.o bubble.o ksw.o ar: cc -Wl,-z,relro -Wl,-z,now -shared -o libfml.so.0 kthread.o misc.o bseq.o htab.o bfc.o rle.o rope.o mrope.o rld0.o unitig.o mag.o bubble.o ksw.o -fPIC -Wl,-soname,libfml.so.0 -lm -lz -lpthread `u' modifier ignored since `D' is the default (see `U') cc -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC libfml.a example.o -o fml-asm -L. -lfml -lm -lz -lpthread make[1]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e' ./fml-asm test/MT-simu.fq.gz > MT.fq test "$(wc -l < MT.fq)" = "4" rm -f MT.fq make[1]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e' ln -s libfml.so.* libfml.so d-shlibmove --commit \ --multiarch \ --devunversioned \ libfml.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libfml-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libfml0/usr/lib/x86_64-linux-gnu mv ./libfml.a debian/libfml-dev/usr/lib/x86_64-linux-gnu mv ./libfml.la debian/libfml-dev/usr/lib/x86_64-linux-gnu || true mv ./libfml.so debian/libfml-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/fermi-lite-0.1+git20221215.85f159e/libfml.so.0 debian/libfml0/usr/lib/x86_64-linux-gnu PKGDEV=libfml-dev PKGSHL=libfml0 mv: cannot stat './libfml.la': No such file or directory make[1]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e' dh_install dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e' help2man --version-string='0.1' \ -n 'assemble Illumina short reads in small regions' \ -N --no-discard-stderr -h '' ./fml-asm > fml-asm.1 dh_installman make[1]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'fml-asm' in '../fml-asm_0.1+git20221215.85f159e-1_amd64.deb'. dpkg-deb: building package 'libfml0' in '../libfml0_0.1+git20221215.85f159e-1_amd64.deb'. dpkg-deb: building package 'libfml-dev' in '../libfml-dev_0.1+git20221215.85f159e-1_amd64.deb'. dpkg-deb: building package 'libfml0-dbgsym' in '../libfml0-dbgsym_0.1+git20221215.85f159e-1_amd64.deb'. dpkg-deb: building package 'fml-asm-dbgsym' in '../fml-asm-dbgsym_0.1+git20221215.85f159e-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../fermi-lite_0.1+git20221215.85f159e-1_amd64.buildinfo dpkg-genchanges --build=binary -O../fermi-lite_0.1+git20221215.85f159e-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1417508 and its subdirectories I: Current time: Sat Dec 14 12:12:20 -12 2024 I: pbuilder-time-stamp: 1734221540 Sun Dec 15 00:12:21 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Sun Dec 15 00:12:21 UTC 2024 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Sun Dec 15 00:15:35 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Sun Dec 15 00:15:39 UTC 2024 I: fermi-lite_0.1+git20221215.85f159e-1_amd64.changes: Format: 1.8 Date: Sat, 14 Dec 2024 19:47:40 +0100 Source: fermi-lite Binary: fml-asm fml-asm-dbgsym libfml-dev libfml0 libfml0-dbgsym Architecture: amd64 Version: 0.1+git20221215.85f159e-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: fml-asm - tool for assembling Illumina short reads in small regions libfml-dev - development headers for libfml libfml0 - library for assembling Illumina short reads in small regions Closes: 1044647 1049564 Changes: fermi-lite (0.1+git20221215.85f159e-1) unstable; urgency=medium . * Team upload. * New upstream version * Cleanup after testing Closes: #1044647 * Fix watchfile to detect new versions on github (routine-update) * Standards-Version: 4.7.0 (routine-update) * Do not move header files away from source repository Closes: #1049564 Checksums-Sha1: 98edcf389bbde45b0bb0e183fea005c9b035f7fb 6828 fermi-lite_0.1+git20221215.85f159e-1_amd64.buildinfo d78a90d16feabde63805f810ab17a2e29bc4e889 174008 fml-asm-dbgsym_0.1+git20221215.85f159e-1_amd64.deb a1c5e006db110d206eb2a5304f33306f6413e278 67176 fml-asm_0.1+git20221215.85f159e-1_amd64.deb 25bf15c669f12bca506e72cb6b12815c75e4daa5 82000 libfml-dev_0.1+git20221215.85f159e-1_amd64.deb 74d391ce465bf45c9e7e270a37dba937b5edce31 171648 libfml0-dbgsym_0.1+git20221215.85f159e-1_amd64.deb 35d5b442a1f2c490ba3c32657cf1d771bd4097ba 70064 libfml0_0.1+git20221215.85f159e-1_amd64.deb Checksums-Sha256: 10659e2b8e016ad8c5e8c22dbfa21afc7ac7ef6ed5884bfa6a987498e9378464 6828 fermi-lite_0.1+git20221215.85f159e-1_amd64.buildinfo 0f332724adeabc0bb35d2f278c455571bf3dbc5a48fb07e9308574e0d1fa5c7b 174008 fml-asm-dbgsym_0.1+git20221215.85f159e-1_amd64.deb 7078728b951dc3fcc2cc0f43a2208e2c232159001bdc06423aa88f58b278388c 67176 fml-asm_0.1+git20221215.85f159e-1_amd64.deb f792e3819a4cca5ee19c31427c01b6f7862bfe40ef37ef13bba58d15edc52850 82000 libfml-dev_0.1+git20221215.85f159e-1_amd64.deb 54e1cbe53a6df21a0075ab0402efa7b206534c4d38de4b026c40c98a766aae3d 171648 libfml0-dbgsym_0.1+git20221215.85f159e-1_amd64.deb 21560e011edb16e6c7cea68f60491c08f8a273e40c82977b61267c07ade8f60d 70064 libfml0_0.1+git20221215.85f159e-1_amd64.deb Files: a1af57c8404c928220236469660a3b21 6828 science optional fermi-lite_0.1+git20221215.85f159e-1_amd64.buildinfo 6027c9824c5ce9960aaac18b37f9e984 174008 debug optional fml-asm-dbgsym_0.1+git20221215.85f159e-1_amd64.deb 674599c4f3544081eb0e7dc02fef31e2 67176 science optional fml-asm_0.1+git20221215.85f159e-1_amd64.deb cb3d2c08952878e9c64ae485f3c38071 82000 libdevel optional libfml-dev_0.1+git20221215.85f159e-1_amd64.deb 1f4040498a6714a6751ad5175a8669d6 171648 debug optional libfml0-dbgsym_0.1+git20221215.85f159e-1_amd64.deb 7fcc7d5633edff325f104b477654ceec 70064 libs optional libfml0_0.1+git20221215.85f159e-1_amd64.deb Sun Dec 15 00:15:40 UTC 2024 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_5-26215.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.GdOwgkHz/fermi-lite_0.1+git20221215.85f159e-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.GdOwgkHz/fermi-lite_0.1+git20221215.85f159e-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.GdOwgkHz/fermi-lite_0.1+git20221215.85f159e-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.GdOwgkHz/b1/fermi-lite_0.1+git20221215.85f159e-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.GdOwgkHz/b2/fermi-lite_0.1+git20221215.85f159e-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.343s) 0.343s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.022s) 0.022s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 645ms CPU time consumed: 645ms Sun Dec 15 00:15:41 UTC 2024 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Sun Dec 15 00:15:41 UTC 2024 I: fermi-lite from unstable built successfully and reproducibly on amd64. Sun Dec 15 00:15:42 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Dec 15 00:15:42 UTC 2024 I: Submitting 8.0K b1/fermi-lite_0.1+git20221215.85f159e-1_amd64.buildinfo.asc Sun Dec 15 00:15:43 UTC 2024 I: Submitting 8.0K b2/fermi-lite_0.1+git20221215.85f159e-1_amd64.buildinfo.asc Sun Dec 15 00:15:44 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Dec 15 00:15:44 UTC 2024 I: Done submitting .buildinfo files. Sun Dec 15 00:15:44 UTC 2024 I: Removing signed fermi-lite_0.1+git20221215.85f159e-1_amd64.buildinfo.asc files: removed './b1/fermi-lite_0.1+git20221215.85f159e-1_amd64.buildinfo.asc' removed './b2/fermi-lite_0.1+git20221215.85f159e-1_amd64.buildinfo.asc'