Mon Nov 11 15:34:17 UTC 2024 I: starting to build fenicsx-performance-tests/unstable/amd64 on jenkins on '2024-11-11 15:34' Mon Nov 11 15:34:17 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_28/38196/console.log Mon Nov 11 15:34:17 UTC 2024 I: Downloading source for unstable/fenicsx-performance-tests=0.9.0-2 --2024-11-11 15:34:17-- http://deb.debian.org/debian/pool/main/f/fenicsx-performance-tests/fenicsx-performance-tests_0.9.0-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2467 (2.4K) [text/prs.lines.tag] Saving to: ‘fenicsx-performance-tests_0.9.0-2.dsc’ 0K .. 100% 319M=0s 2024-11-11 15:34:17 (319 MB/s) - ‘fenicsx-performance-tests_0.9.0-2.dsc’ saved [2467/2467] Mon Nov 11 15:34:17 UTC 2024 I: fenicsx-performance-tests_0.9.0-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: fenicsx-performance-tests Binary: fenicsx-performance-tests, fenicsx-performance-tests-source Architecture: any all Version: 0.9.0-2 Maintainer: Debian Science Maintainers Uploaders: Drew Parsons , Francesco Ballarin Homepage: https://github.com/FEniCS/performance-test Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/science-team/fenics/fenicsx-performance-tests Vcs-Git: https://salsa.debian.org/science-team/fenics/fenicsx-performance-tests.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@ Build-Depends: debhelper-compat (= 13), cmake (>= 3.16~), libboost-dev (>= 1.70~), libdolfinx-dev (>= 1:0.9~), libdolfinx-real-dev, mpi-default-dev, python3-ffcx Package-List: fenicsx-performance-tests deb libdevel optional arch=any fenicsx-performance-tests-source deb libdevel optional arch=all Checksums-Sha1: 0bae6b5b5310de362337f147f3308ab4b450f7cb 21022 fenicsx-performance-tests_0.9.0.orig.tar.gz e42689299be073e6bcdecbdc72343b665b2e4fea 6360 fenicsx-performance-tests_0.9.0-2.debian.tar.xz Checksums-Sha256: d7d39eb7e8964658687ef2240ad79e43392ceaa8c17117bd641b97a726c7d111 21022 fenicsx-performance-tests_0.9.0.orig.tar.gz 6f391125ffb809beae151e8c8411547f5f2fd9627153e1d72396ec1fdc7db738 6360 fenicsx-performance-tests_0.9.0-2.debian.tar.xz Files: e6427a2c02c8364c21d3f31ffafff18b 21022 fenicsx-performance-tests_0.9.0.orig.tar.gz 6a309742bcdb49f72d3fbf49a21e57ad 6360 fenicsx-performance-tests_0.9.0-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEG10EseUHu/A2aeK4AfNfwz5zr4wFAmcwyAAACgkQAfNfwz5z r4x6+A//d1iYy+wPAYtjIKSLh9RaULqBLOmwY3Gx/WxLSOHvFl2kl6MJmdsPxK9A 31w4hnGNADDYJkTRi9RL1qif7ID+SGLwoFBYvOZVgL0MOVajshwPLMJZeJSRZ03s ojSrH7p90LLXSHE+OgWdDy1XKE9RtB2gmg8gDhmQeTuTOa5Ck+gDrtFCvQQm8RU7 OfBIMsdr6nhcoSkRIUM9nD4Ip+lSyxBmHphVYs46nQkHuBvPfksTGjs0n15J4ist nfXPvkCQcK5jfHbPt0GYZccSFnQkOr1YQDBIGiSwqFI5zazc5Txi2U0cnagmblm9 Y/L9dwkIIRxBzTzBchyN9nifjBtXN2KxWf6YERnTRoCvYSg5JAp8th/MCsGvIS1P t5swOLTHrG+AMVSOrLnleGmqUh6Wqtq6N7/aO50ErWIZqUZM+EZMhH4fDdA9rBfw W56rls4DqqG4q9L5gNJBD+Mb+JxBnrSxTmYmql5FOI8S4/cej8lQr9jcKxSwFD04 vzldYbl8Vx89GZa4qe1wV7Hbj/izvyCjZ+F79PaV1GQ/l8N/hi66vT/yOZOtAdGD BQ5kLlmAiz30kB6xAC/uNaUpdJ9SBUO0WKj/NiaQ9Wnwu2fxzUR2x6hieqrKKECe +77pX4mAdODktGwapB3Vh7rX/ukItzSycNnQzaNmNJj8uOpDLcs= =6WIY -----END PGP SIGNATURE----- Mon Nov 11 15:34:17 UTC 2024 I: Checking whether the package is not for us Mon Nov 11 15:34:17 UTC 2024 I: Starting 1st build on remote node ionos15-amd64.debian.net. Mon Nov 11 15:34:17 UTC 2024 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Mon Nov 11 15:38:36 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Dec 14 09:57:19 -12 2025 I: pbuilder-time-stamp: 1765749439 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fenicsx-performance-tests_0.9.0-2.dsc] I: copying [./fenicsx-performance-tests_0.9.0.orig.tar.gz] I: copying [./fenicsx-performance-tests_0.9.0-2.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Nov 10 14:49:36 2024 gpgv: using RSA key 1B5D04B1E507BBF03669E2B801F35FC33E73AF8C gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fenicsx-performance-tests_0.9.0-2.dsc: no acceptable signature found dpkg-source: info: extracting fenicsx-performance-tests in fenicsx-performance-tests-0.9.0 dpkg-source: info: unpacking fenicsx-performance-tests_0.9.0.orig.tar.gz dpkg-source: info: unpacking fenicsx-performance-tests_0.9.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_complex_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1430839/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='d064c8cebe9348e5afc9b30bc08d17dc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1430839' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ieeGwmYy/pbuilderrc_peht --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ieeGwmYy/b1 --logfile b1/build.log fenicsx-performance-tests_0.9.0-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1430839/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake (>= 3.16~), libboost-dev (>= 1.70~), libdolfinx-dev (>= 1:0.9~), libdolfinx-real-dev, mpi-default-dev, python3-ffcx dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake (>= 3.16~); however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev (>= 1.70~); however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfinx-dev (>= 1:0.9~); however: Package libdolfinx-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfinx-real-dev; however: Package libdolfinx-real-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ffcx; however: Package python3-ffcx is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} catch2{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libadios2-common-c++11-dev{a} libadios2-common-core-dev{a} libadios2-mpi-auxiliary-2.10{a} libadios2-mpi-auxiliary-dev{a} libadios2-mpi-c++11-2.10{a} libadios2-mpi-c++11-dev{a} libadios2-mpi-core-2.10{a} libadios2-mpi-core-dev{a} libadios2-mpi-plugins{a} libaec-dev{a} libaec0{a} libamd-comgr2{a} libamd3{a} libamdhip64-5{a} libarchive-zip-perl{a} libarchive13t64{a} libarpack2-dev{a} libarpack2t64{a} libbasix-dev{a} libbasix0.9{a} libblas-dev{a} libblas3{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-math-dev{a} libboost-math1.83-dev{a} libboost-math1.83.0{a} libboost-mpi-dev{a} libboost-mpi1.83-dev{a} libboost-mpi1.83.0{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization-dev{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost-timer-dev{a} libboost-timer1.83-dev{a} libboost-timer1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbtf2{a} libc6-dbg{a} libcamd3{a} libcatch2-dev{a} libcbor0.10{a} libccolamd3{a} libcholmod5{a} libcolamd3{a} libcom-err2{a} libcombblas2.0.0t64{a} libcurl4-openssl-dev{a} libcurl4t64{a} libcxsparse4{a} libdebhelper-perl{a} libdolfinx-dev{a} libdolfinx-real-dev{a} libdolfinx-real0.9{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm2{a} libedit2{a} libeigen3-dev{a} libelf1t64{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-quad3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libfmt-dev{a} libfmt10{a} libgfortran-14-dev{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-mpi-dev{a} libhdf5-openmpi-103-1t64{a} libhdf5-openmpi-cpp-103-1t64{a} libhdf5-openmpi-dev{a} libhdf5-openmpi-fortran-102t64{a} libhdf5-openmpi-hl-100t64{a} libhdf5-openmpi-hl-cpp-100t64{a} libhdf5-openmpi-hl-fortran-100t64{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libhypre-2.31.0{a} libhypre-dev{a} libibmad5{a} libibumad3{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu72{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libklu2{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} libldap-dev{a} libldl3{a} libllvm17t64{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libmetis5{a} libmumps-5.7{a} libmumps-dev{a} libmumps-headers-dev{a} libmunge2{a} libnghttp2-14{a} libnghttp2-dev{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnorm1t64{a} libnsl2{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3t64{a} libp11-kit-dev{a} libparpack2-dev{a} libparpack2t64{a} libparu1{a} libpciaccess0{a} libpetsc-real3.21{a} libpetsc-real3.21-dev{a} libpetsc3.21-dev-common{a} libpgm-5.3-0t64{a} libpipeline1{a} libpkgconf3{a} libpmix-dev{a} libpmix2t64{a} libpng16-16t64{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpsm-infinipath1{a} libpsm2-2{a} libptscotch-7.0{a} libptscotch-dev{a} libpugixml-dev{a} libpugixml1v5{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} librbio4{a} librdmacm1t64{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.2{a} libscotch-7.0{a} libscotch-dev{a} libslepc-real3.21{a} libslepc-real3.21-dev{a} libsodium23{a} libspdlog-dev{a} libspdlog1.12{a} libspex3{a} libspqr4{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsuitesparse-dev{a} libsuitesparse-mongoose3{a} libsuitesparseconfig7{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist8{a} libsuperlu7{a} libsz2{a} libtasn1-6-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libucx0{a} libumfpack6{a} libunbound8{a} libuv1t64{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxml2{a} libxml2-dev{a} libxnvctrl0{a} libyaml-0-2{a} libyaml-cpp0.8{a} libyaml-dev{a} libz3-4{a} libzmq5{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} netbase{a} nettle-dev{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-basix{a} python3-cffi{a} python3-cffi-backend{a} python3-dev{a} python3-ffcx{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pkg-resources{a} python3-ply{a} python3-pycparser{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-ufl{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} valgrind{a} valgrind-mpi{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl gdb javascript-common krb5-locales ksh ksh93u+m libarchive-cpio-perl libcoarrays-openmpi-dev libgl-dev libgraphblas-dev libldap-common libmail-sendmail-perl libpetsc3.21-dev-examples libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx mksh psmisc publicsuffix wget xauth zsh 0 packages upgraded, 346 newly installed, 0 to remove and 0 not upgraded. Need to get 281 MB of archives. After unpacking 1320 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-10 [97.2 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20240808-1 [93.9 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libcbor0.10 amd64 0.10.2-2 [28.3 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libfido2-1 amd64 1.15.0-1+b1 [78.7 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 openssh-client amd64 1:9.9p1-3 [991 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libcatch2-dev amd64 3.7.1-0.4 [613 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 catch2 all 3.7.1-0.4 [5052 B] Get: 46 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.30.5-1 [2223 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b5 [307 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.11.0-1 [351 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-2 [81.6 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.30.5-1 [11.4 MB] Get: 63 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.1-1+b1 [54.8 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 70 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libgfortran-14-dev amd64 14.2.0-8 [878 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-8 [11.7 MB] Get: 80 http://deb.debian.org/debian unstable/main amd64 gfortran-14 amd64 14.2.0-8 [12.2 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B] Get: 82 http://deb.debian.org/debian unstable/main amd64 gfortran amd64 4:14.2.0-1 [1436 B] Get: 83 http://deb.debian.org/debian unstable/main amd64 libnl-3-200 amd64 3.7.0-0.3+b1 [59.4 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-200 amd64 3.7.0-0.3+b1 [182 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libibverbs1 amd64 52.0-2+b1 [62.2 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 ibverbs-providers amd64 52.0-2+b1 [343 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 72.1-5+b1 [210 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.21.3-3 [59.5 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.21.3-3 [41.7 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.21.3-3 [42.0 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.21.3-3 [53.5 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.21.3-3 [126 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libadios2-common-c++11-dev all 2.10.1+dfsg1-12 [25.3 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libadios2-common-core-dev amd64 2.10.1+dfsg1-12 [123 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libadios2-mpi-auxiliary-2.10 amd64 2.10.1+dfsg1-12 [402 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libadios2-mpi-auxiliary-dev amd64 2.10.1+dfsg1-12 [22.8 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 librdmacm1t64 amd64 52.0-2+b1 [70.4 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libfabric1 amd64 1.17.0-3.1 [631 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10+b1 [132 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10+b1 [54.3 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libhwloc15 amd64 2.11.2-1 [164 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libmunge2 amd64 0.5.15-4+b1 [20.0 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b2 [51.9 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3+b2 [24.4 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libxnvctrl0 amd64 535.171.04-1+b1 [14.2 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b2 [40.2 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libhwloc-plugins amd64 2.11.2-1 [18.1 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libpmix2t64 amd64 5.0.3-2+b1 [662 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libllvm17t64 amd64 1:17.0.6-18 [23.6 MB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b2 [13.0 MB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.123-1 [8084 B] Get: 121 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libhsakmt1 amd64 6.1.2+ds-1 [59.8 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libhsa-runtime64-1 amd64 6.1.2-2 [535 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libamdhip64-5 amd64 5.7.1-5 [8877 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libibumad3 amd64 52.0-2+b1 [28.2 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libibmad5 amd64 52.0-2+b1 [43.4 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libucx0 amd64 1.17.0+ds-3 [1130 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 libopenmpi3t64 amd64 5.0.5-3 [2007 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get: 132 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-103-1t64 amd64 1.10.10+repack-4 [1312 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libpugixml1v5 amd64 1.14-2 [88.6 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libyaml-cpp0.8 amd64 0.8.0+dfsg-6+b2 [133 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1+b1 [221 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1+b1 [162 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libsodium23 amd64 1.0.18-1+b2 [165 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libzmq5 amd64 4.3.5-1+b3 [283 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libadios2-mpi-plugins amd64 2.10.1+dfsg1-12 [14.7 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libadios2-mpi-core-2.10 amd64 2.10.1+dfsg1-12 [1733 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libadios2-mpi-c++11-2.10 amd64 2.10.1+dfsg1-12 [206 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libadios2-mpi-core-dev amd64 2.10.1+dfsg1-12 [79.3 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libadios2-mpi-c++11-dev amd64 2.10.1+dfsg1-12 [10.8 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.3-1+b1 [21.5 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-2 [23.8 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libamd3 amd64 1:7.8.3+dfsg-2 [40.7 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-3+b1 [152 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-3+b1 [2450 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libarpack2t64 amd64 3.9.1-1.1+b2 [104 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.0-3+b1 [161 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.0-3+b1 [4990 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libarpack2-dev amd64 3.9.1-1.1+b2 [119 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libbasix0.9 amd64 0.9.0-2 [409 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libbasix-dev amd64 0.9.0-2 [66.9 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-3.2 [10.6 MB] Get: 161 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83.0 amd64 1.83.0-3.2 [234 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83-dev amd64 1.83.0-3.2 [235 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.83.0t64 amd64 1.83.0-3.2 [240 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.83-dev amd64 1.83.0-3.2 [245 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 libboost-chrono-dev amd64 1.83.0.2+b2 [4224 B] Get: 166 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83.0 amd64 1.83.0-3.2 [230 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83.0 amd64 1.83.0-3.2 [333 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83-dev amd64 1.83.0-3.2 [372 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83-dev amd64 1.83.0-3.2 [239 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 171 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-3.2 [281 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83.0 amd64 1.83.0-3.2 [230 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83-dev amd64 1.83.0-3.2 [231 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83-dev amd64 1.83.0-3.2 [297 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem-dev amd64 1.83.0.2+b2 [3628 B] Get: 176 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83.0 amd64 1.83.0-3.2 [329 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 72.1-5+b1 [10.4 MB] Get: 178 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83-dev amd64 1.83.0-3.2 [346 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-3.2 [261 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 181 http://deb.debian.org/debian unstable/main amd64 libboost-math1.83.0 amd64 1.83.0-3.2 [523 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 libboost-math1.83-dev amd64 1.83.0-3.2 [569 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 libboost-math-dev amd64 1.83.0.2+b2 [3796 B] Get: 184 http://deb.debian.org/debian unstable/main amd64 libboost-mpi1.83.0 amd64 1.83.0-3.2 [271 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 openmpi-common all 5.0.5-3 [95.0 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 libnl-3-dev amd64 3.7.0-0.3+b1 [100 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-dev amd64 3.7.0-0.3+b1 [200 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 libibverbs-dev amd64 52.0-2+b1 [636 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 libnuma-dev amd64 2.0.18-1+b1 [36.6 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 libltdl7 amd64 2.4.7-8 [393 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 libltdl-dev amd64 2.4.7-8 [165 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 libhwloc-dev amd64 2.11.2-1 [254 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 194 http://deb.debian.org/debian unstable/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-10+b1 [108 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-10+b1 [61.1 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 libevent-dev amd64 2.1.12-stable-10+b1 [305 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 libpmix-dev amd64 5.0.3-2+b1 [3958 kB] Get: 199 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 201 http://deb.debian.org/debian unstable/main amd64 openmpi-bin amd64 5.0.5-3 [168 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 libopenmpi-dev amd64 5.0.5-3 [1087 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 mpi-default-dev amd64 1.17 [3148 B] Get: 204 http://deb.debian.org/debian unstable/main amd64 libboost-mpi1.83-dev amd64 1.83.0-3.2 [290 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 libboost-mpi-dev amd64 1.83.0.2+b2 [3680 B] Get: 206 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.83.0 amd64 1.83.0-3.2 [347 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.83-dev amd64 1.83.0-3.2 [375 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B] Get: 209 http://deb.debian.org/debian unstable/main amd64 libboost-serialization-dev amd64 1.83.0.2+b2 [3832 B] Get: 210 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83.0 amd64 1.83.0-3.2 [269 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83-dev amd64 1.83.0-3.2 [276 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 libboost-thread-dev amd64 1.83.0.2+b2 [3624 B] Get: 213 http://deb.debian.org/debian unstable/main amd64 libboost-timer1.83.0 amd64 1.83.0-3.2 [235 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 libboost-timer1.83-dev amd64 1.83.0-3.2 [236 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 libboost-timer-dev amd64 1.83.0.2+b2 [3716 B] Get: 216 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b5 [316 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 libbtf2 amd64 1:7.8.3+dfsg-2 [24.7 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 libc6-dbg amd64 2.40-3 [7097 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 libcamd3 amd64 1:7.8.3+dfsg-2 [37.5 kB] Get: 220 http://deb.debian.org/debian unstable/main amd64 libccolamd3 amd64 1:7.8.3+dfsg-2 [39.2 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-2 [32.5 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 libcholmod5 amd64 1:7.8.3+dfsg-2 [638 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 libcombblas2.0.0t64 amd64 2.0.0-6 [264 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.7-2+b1 [123 kB] Get: 225 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.21.3-3 [15.7 kB] Get: 226 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.5.18+dfsg-3+b1 [303 kB] Get: 227 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB] Get: 228 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 229 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-2+b2 [329 kB] Get: 230 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-2+b2 [642 kB] Get: 231 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.22.0-1 [598 kB] Get: 232 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.8-2 [449 kB] Get: 233 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.8-2 [449 kB] Get: 234 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-2+b1 [208 kB] Get: 235 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.19.0-3+b3 [98.9 kB] Get: 236 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10-1+b1 [1317 kB] Get: 237 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.8-2 [1391 kB] Get: 238 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 239 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.3.2-2 [2742 kB] Get: 240 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 241 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.6+dfsg-1+b1 [365 kB] Get: 242 http://deb.debian.org/debian unstable/main amd64 libcurl4-openssl-dev amd64 8.11.0-1 [461 kB] Get: 243 http://deb.debian.org/debian unstable/main amd64 libcxsparse4 amd64 1:7.8.3+dfsg-2 [84.2 kB] Get: 244 http://deb.debian.org/debian unstable/main amd64 libfmt10 amd64 10.1.1+ds1-4 [127 kB] Get: 245 http://deb.debian.org/debian unstable/main amd64 libfftw3-double3 amd64 3.3.10-2 [781 kB] Get: 246 http://deb.debian.org/debian unstable/main amd64 libfftw3-long3 amd64 3.3.10-2 [347 kB] Get: 247 http://deb.debian.org/debian unstable/main amd64 libfftw3-single3 amd64 3.3.10-2 [809 kB] Get: 248 http://deb.debian.org/debian unstable/main amd64 libfftw3-mpi3 amd64 3.3.10-2 [62.8 kB] Get: 249 http://deb.debian.org/debian unstable/main amd64 libmetis5 amd64 5.1.0.dfsg-7+b2 [176 kB] Get: 250 http://deb.debian.org/debian unstable/main amd64 libptscotch-7.0 amd64 7.0.5-1 [656 kB] Get: 251 http://deb.debian.org/debian unstable/main amd64 libsuperlu-dist8 amd64 8.2.1+dfsg1-5 [610 kB] Get: 252 http://deb.debian.org/debian unstable/main amd64 libhypre-2.31.0 amd64 2.31.0-3 [1710 kB] Get: 253 http://deb.debian.org/debian unstable/main amd64 libklu2 amd64 1:7.8.3+dfsg-2 [90.6 kB] Get: 254 http://deb.debian.org/debian unstable/main amd64 mpi-default-bin amd64 1.17 [2372 B] Get: 255 http://deb.debian.org/debian unstable/main amd64 libscalapack-openmpi2.2 amd64 2.2.1-5 [1578 kB] Get: 256 http://deb.debian.org/debian unstable/main amd64 libmumps-5.7 amd64 5.7.3-3 [1965 kB] Get: 257 http://deb.debian.org/debian unstable/main amd64 libspqr4 amd64 1:7.8.3+dfsg-2 [146 kB] Get: 258 http://deb.debian.org/debian unstable/main amd64 libsuperlu7 amd64 7.0.0+dfsg1-2 [174 kB] Get: 259 http://deb.debian.org/debian unstable/main amd64 libumfpack6 amd64 1:7.8.3+dfsg-2 [280 kB] Get: 260 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-1+b2 [52.7 kB] Get: 261 http://deb.debian.org/debian unstable/main amd64 libpetsc-real3.21 amd64 3.21.6+dfsg1-2 [7057 kB] Get: 262 http://deb.debian.org/debian unstable/main amd64 libparpack2t64 amd64 3.9.1-1.1+b2 [99.3 kB] Get: 263 http://deb.debian.org/debian unstable/main amd64 libslepc-real3.21 amd64 3.21.2+dfsg1-2 [1219 kB] Get: 264 http://deb.debian.org/debian unstable/main amd64 libspdlog1.12 amd64 1:1.12.0+ds-2+b3 [104 kB] Get: 265 http://deb.debian.org/debian unstable/main amd64 libdolfinx-real0.9 amd64 1:0.9.0-2 [576 kB] Get: 266 http://deb.debian.org/debian unstable/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 267 http://deb.debian.org/debian unstable/main amd64 libldl3 amd64 1:7.8.3+dfsg-2 [24.5 kB] Get: 268 http://deb.debian.org/debian unstable/main amd64 libsuitesparse-mongoose3 amd64 1:7.8.3+dfsg-2 [47.3 kB] Get: 269 http://deb.debian.org/debian unstable/main amd64 librbio4 amd64 1:7.8.3+dfsg-2 [39.9 kB] Get: 270 http://deb.debian.org/debian unstable/main amd64 libspex3 amd64 1:7.8.3+dfsg-2 [59.9 kB] Get: 271 http://deb.debian.org/debian unstable/main amd64 libparu1 amd64 1:7.8.3+dfsg-2 [65.1 kB] Get: 272 http://deb.debian.org/debian unstable/main amd64 libsuitesparse-dev amd64 1:7.8.3+dfsg-2 [1476 kB] Get: 273 http://deb.debian.org/debian unstable/main amd64 libscotch-7.0 amd64 7.0.5-1 [411 kB] Get: 274 http://deb.debian.org/debian unstable/main amd64 libscotch-dev amd64 7.0.5-1 [1574 kB] Get: 275 http://deb.debian.org/debian unstable/main amd64 libptscotch-dev amd64 7.0.5-1 [1375 kB] Get: 276 http://deb.debian.org/debian unstable/main amd64 libscalapack-openmpi-dev amd64 2.2.1-5 [10.7 kB] Get: 277 http://deb.debian.org/debian unstable/main amd64 libscalapack-mpi-dev amd64 2.2.1-5 [5888 B] Get: 278 http://deb.debian.org/debian unstable/main amd64 libfftw3-quad3 amd64 3.3.10-2 [617 kB] Get: 279 http://deb.debian.org/debian unstable/main amd64 libfftw3-bin amd64 3.3.10-2 [51.0 kB] Get: 280 http://deb.debian.org/debian unstable/main amd64 libfftw3-dev amd64 3.3.10-2 [2113 kB] Get: 281 http://deb.debian.org/debian unstable/main amd64 libfftw3-mpi-dev amd64 3.3.10-2 [67.3 kB] Get: 282 http://deb.debian.org/debian unstable/main amd64 opencl-c-headers all 3.0~2024.05.08-1 [46.1 kB] Get: 283 http://deb.debian.org/debian unstable/main amd64 opencl-clhpp-headers all 3.0~2024.05.08-1 [49.8 kB] Get: 284 http://deb.debian.org/debian unstable/main amd64 ocl-icd-opencl-dev amd64 2.3.2-1+b2 [8672 B] Get: 285 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-fortran-102t64 amd64 1.10.10+repack-4 [90.7 kB] Get: 286 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-hl-100t64 amd64 1.10.10+repack-4 [63.9 kB] Get: 287 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-hl-fortran-100t64 amd64 1.10.10+repack-4 [40.7 kB] Get: 288 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-cpp-103-1t64 amd64 1.10.10+repack-4 [131 kB] Get: 289 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-hl-cpp-100t64 amd64 1.10.10+repack-4 [21.4 kB] Get: 290 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 291 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3+b1 [292 kB] Get: 292 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-3+b1 [72.2 kB] Get: 293 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-dev amd64 1.10.10+repack-4 [2717 kB] Get: 294 http://deb.debian.org/debian unstable/main amd64 libhdf5-mpi-dev amd64 1.10.10+repack-4 [15.6 kB] Get: 295 http://deb.debian.org/debian unstable/main amd64 libsuperlu-dev amd64 7.0.0+dfsg1-2 [21.9 kB] Get: 296 http://deb.debian.org/debian unstable/main amd64 libsuperlu-dist-dev amd64 8.2.1+dfsg1-5 [903 kB] Get: 297 http://deb.debian.org/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 298 http://deb.debian.org/debian unstable/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get: 299 http://deb.debian.org/debian unstable/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB] Get: 300 http://deb.debian.org/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.2-3+b2 [40.8 kB] Get: 301 http://deb.debian.org/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 302 http://deb.debian.org/debian unstable/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB] Get: 303 http://deb.debian.org/debian unstable/main amd64 libx11-dev amd64 2:1.8.10-2 [891 kB] Get: 304 http://deb.debian.org/debian unstable/main amd64 libyaml-dev amd64 0.2.5-1+b2 [63.5 kB] Get: 305 http://deb.debian.org/debian unstable/main amd64 libpetsc3.21-dev-common all 3.21.6+dfsg1-2 [309 kB] Get: 306 http://deb.debian.org/debian unstable/main amd64 libhypre-dev amd64 2.31.0-3 [1974 kB] Get: 307 http://deb.debian.org/debian unstable/main amd64 libmumps-headers-dev all 5.7.3-3 [36.3 kB] Get: 308 http://deb.debian.org/debian unstable/main amd64 libmumps-dev amd64 5.7.3-3 [1861 kB] Get: 309 http://deb.debian.org/debian unstable/main amd64 valgrind amd64 1:3.20.0-2.1 [14.3 MB] Get: 310 http://deb.debian.org/debian unstable/main amd64 valgrind-mpi amd64 1:3.20.0-2.1 [123 kB] Get: 311 http://deb.debian.org/debian unstable/main amd64 libpetsc-real3.21-dev amd64 3.21.6+dfsg1-2 [7053 kB] Get: 312 http://deb.debian.org/debian unstable/main amd64 libparpack2-dev amd64 3.9.1-1.1+b2 [110 kB] Get: 313 http://deb.debian.org/debian unstable/main amd64 libslepc-real3.21-dev amd64 3.21.2+dfsg1-2 [5702 kB] Get: 314 http://deb.debian.org/debian unstable/main amd64 libdolfinx-real-dev amd64 1:0.9.0-2 [48.1 kB] Get: 315 http://deb.debian.org/debian unstable/main amd64 libpugixml-dev amd64 1.14-2 [109 kB] Get: 316 http://deb.debian.org/debian unstable/main amd64 libfmt-dev amd64 10.1.1+ds1-4 [177 kB] Get: 317 http://deb.debian.org/debian unstable/main amd64 libspdlog-dev amd64 1:1.12.0+ds-2+b3 [85.5 kB] Get: 318 http://deb.debian.org/debian unstable/main amd64 libxml2-dev amd64 2.12.7+dfsg+really2.9.14-0.1 [794 kB] Get: 319 http://deb.debian.org/debian unstable/main amd64 python3-cffi-backend amd64 1.17.1-2 [87.5 kB] Get: 320 http://deb.debian.org/debian unstable/main amd64 python3-ply all 3.11-7 [62.6 kB] Get: 321 http://deb.debian.org/debian unstable/main amd64 python3-pycparser all 2.22-2 [78.0 kB] Get: 322 http://deb.debian.org/debian unstable/main amd64 python3-cffi all 1.17.1-2 [89.4 kB] Get: 323 http://deb.debian.org/debian unstable/main amd64 libpython3.12t64 amd64 3.12.7-3 [2153 kB] Get: 324 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Get: 325 http://deb.debian.org/debian unstable/main amd64 libpython3.12-dev amd64 3.12.7-3 [5124 kB] Get: 326 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.12.6-1 [9952 B] Get: 327 http://deb.debian.org/debian unstable/main amd64 python3.12-dev amd64 3.12.7-3 [505 kB] Get: 328 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 329 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 330 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.12.6-1 [26.1 kB] Get: 331 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 332 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 333 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 334 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 335 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 336 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 337 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 338 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 339 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:1.26.4+ds-11 [4236 kB] Get: 340 http://deb.debian.org/debian unstable/main amd64 python3-ufl all 2024.2.0-2 [150 kB] Get: 341 http://deb.debian.org/debian unstable/main amd64 python3-basix amd64 0.9.0-2 [132 kB] Get: 342 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 343 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 344 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.2.0-1 [731 kB] Get: 345 http://deb.debian.org/debian unstable/main amd64 python3-ffcx all 1:0.9.0-2 [94.9 kB] Get: 346 http://deb.debian.org/debian unstable/main amd64 libdolfinx-dev amd64 1:0.9.0-2 [201 kB] Fetched 281 MB in 13s (21.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_amd64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:amd64 (3.12.7-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20289 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_amd64.deb ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... 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Setting up libamd3:amd64 (1:7.8.3+dfsg-2) ... Setting up libxau-dev:amd64 (1:1.0.11-1) ... Setting up libboost-chrono1.83-dev:amd64 (1.83.0-3.2) ... Setting up libspdlog1.12:amd64 (1:1.12.0+ds-2+b3) ... Setting up nettle-dev:amd64 (3.10-1+b1) ... Setting up libyaml-dev:amd64 (0.2.5-1+b2) ... Setting up libboost-math1.83-dev:amd64 (1.83.0-3.2) ... Setting up libtool (2.4.7-8) ... Setting up libcolamd3:amd64 (1:7.8.3+dfsg-2) ... Setting up libspex3:amd64 (1:7.8.3+dfsg-2) ... Setting up libboost-chrono-dev:amd64 (1.83.0.2+b2) ... Setting up libfftw3-bin (3.3.10-2) ... Setting up libsuitesparse-mongoose3:amd64 (1:7.8.3+dfsg-2) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libboost-math-dev:amd64 (1.83.0.2+b2) ... Setting up libevent-openssl-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libpugixml-dev:amd64 (1.14-2) ... Setting up libaec-dev:amd64 (1.1.3-1+b1) ... Setting up libcxsparse4:amd64 (1:7.8.3+dfsg-2) ... 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Setting up libllvm17t64:amd64 (1:17.0.6-18) ... Setting up librbio4:amd64 (1:7.8.3+dfsg-2) ... Setting up libboost-date-time1.83-dev:amd64 (1.83.0-3.2) ... Setting up libldap-dev:amd64 (2.5.18+dfsg-3+b1) ... Setting up opencl-clhpp-headers (3.0~2024.05.08-1) ... Setting up liblapack-dev:amd64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libeigen3-dev (3.4.0-4) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libfmt-dev:amd64 (10.1.1+ds1-4) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-3.2) ... Setting up libboost-serialization-dev:amd64 (1.83.0.2+b2) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up ocl-icd-opencl-dev:amd64 (2.3.2-1+b2) ... Setting up libevent-extra-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libccolamd3:amd64 (1:7.8.3+dfsg-2) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libdrm2:amd64 (2.4.123-1) ... Setting up libnl-3-dev:amd64 (3.7.0-0.3+b1) ... Setting up libbasix0.9:amd64 (0.9.0-2) ... Setting up groff-base (1.23.0-5) ... Setting up libhwloc-dev:amd64 (2.11.2-1) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up gfortran-14 (14.2.0-8) ... Setting up libsuperlu-dev:amd64 (7.0.0+dfsg1-2) ... Setting up libbasix-dev:amd64 (0.9.0-2) ... Setting up libarchive13t64:amd64 (3.7.4-1.1) ... Setting up libfftw3-dev:amd64 (3.3.10-2) ... Setting up libboost-timer-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-filesystem-dev:amd64 (1.83.0.2+b2) ... Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... Setting up libboost-thread1.83-dev:amd64 (1.83.0-3.2) ... Setting up libgnutls28-dev:amd64 (3.8.8-2) ... Setting up libnghttp2-dev:amd64 (1.64.0-1) ... Setting up libibverbs1:amd64 (52.0-2+b1) ... Setting up libcholmod5:amd64 (1:7.8.3+dfsg-2) ... Setting up libarpack2-dev:amd64 (3.9.1-1.1+b2) ... Setting up libxcb1-dev:amd64 (1.17.0-2+b1) ... Setting up libzmq5:amd64 (4.3.5-1+b3) ... Setting up libcurl4t64:amd64 (8.11.0-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up ibverbs-providers:amd64 (52.0-2+b1) ... Setting up libspqr4:amd64 (1:7.8.3+dfsg-2) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-3.2) ... Setting up openssh-client (1:9.9p1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libx11-dev:amd64 (2:1.8.10-2) ... Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up libhwloc-plugins:amd64 (2.11.2-1) ... Setting up libspdlog-dev:amd64 (1:1.12.0+ds-2+b3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1) ... Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libnl-route-3-dev:amd64 (3.7.0-0.3+b1) ... Setting up libklu2:amd64 (1:7.8.3+dfsg-2) ... Setting up libgssrpc4t64:amd64 (1.21.3-3) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libevent-dev (2.1.12-stable-10+b1) ... Setting up libpmix2t64:amd64 (5.0.3-2+b1) ... Setting up libumfpack6:amd64 (1:7.8.3+dfsg-2) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up cmake (3.30.5-1) ... Setting up librdmacm1t64:amd64 (52.0-2+b1) ... Setting up libpmix-dev:amd64 (5.0.3-2+b1) ... Setting up libhsakmt1:amd64 (6.1.2+ds-1) ... Setting up libboost-thread-dev:amd64 (1.83.0.2+b2) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-3) ... Setting up libfabric1:amd64 (1.17.0-3.1) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ... Setting up libkdb5-10t64:amd64 (1.21.3-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libibverbs-dev:amd64 (52.0-2+b1) ... Setting up libparu1:amd64 (1:7.8.3+dfsg-2) ... Setting up libpython3.12t64:amd64 (3.12.7-3) ... Setting up libhsa-runtime64-1:amd64 (6.1.2-2) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-3) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up krb5-multidev:amd64 (1.21.3-3) ... Setting up libsuitesparse-dev:amd64 (1:7.8.3+dfsg-2) ... Setting up python3 (3.12.6-1) ... /usr/share/petsc/3.21/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l' axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') /usr/share/petsc/3.21/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l' axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') /usr/share/petsc/3.21/lib/petsc/bin/petsclogformat.py:253: SyntaxWarning: invalid escape sequence '\d' print("\documentclass{article}") /usr/share/petsc/3.21/lib/petsc/bin/petsclogformat.py:256: SyntaxWarning: invalid escape sequence '\c' print("\centering") /usr/share/petsc/3.21/lib/petsc/bin/petsclogformat.py:259: SyntaxWarning: invalid escape sequence '\m' print(" & & \multicolumn{4}{c}{--------------- Percent of -------------} & \\\\") /usr/share/petsc/3.21/lib/petsc/bin/petsclogformat.py:261: SyntaxWarning: invalid escape sequence '\h' print("\hline") /usr/share/petsc/3.21/lib/petsc/bin/petsclogformat.py:321: SyntaxWarning: invalid escape sequence '\e' print("\end{tabular}") /usr/share/petsc/3.21/lib/petsc/bin/petsclogformat.py:322: SyntaxWarning: invalid escape sequence '\e' print("\end{table}") /usr/share/petsc/3.21/lib/petsc/bin/petsclogformat.py:323: SyntaxWarning: invalid escape sequence '\e' print("\end{document}") Setting up libpython3.12-dev:amd64 (3.12.7-3) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up libkrb5-dev:amd64 (1.21.3-3) ... Setting up libamdhip64-5 (5.7.1-5) ... Setting up libcurl4-openssl-dev:amd64 (8.11.0-1) ... Setting up python3.12-dev (3.12.7-3) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-cffi-backend:amd64 (1.17.1-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up libucx0:amd64 (1.17.0+ds-3) ... Setting up libpython3-dev:amd64 (3.12.6-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-ply (3.11-7) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-pycparser (2.22-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.12.6-1) ... Setting up libopenmpi3t64:amd64 (5.0.5-3) ... Setting up libparpack2t64:amd64 (3.9.1-1.1+b2) ... Setting up libboost-mpi1.83.0 (1.83.0-3.2) ... Setting up openmpi-bin (5.0.5-3) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/mpirun.1.gz because associated file /usr/share/man/man1/mpirun.openmpi.1.gz (of link group mpirun) doesn't exist update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up python3-pkg-resources (75.2.0-1) ... Setting up libptscotch-7.0:amd64 (7.0.5-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-cffi (1.17.1-2) ... Setting up mpi-default-bin (1.17) ... Setting up libcombblas2.0.0t64:amd64 (2.0.0-6) ... Setting up libfftw3-mpi3:amd64 (3.3.10-2) ... Setting up libhdf5-openmpi-103-1t64:amd64 (1.10.10+repack-4) ... Setting up python3-numpy (1:1.26.4+ds-11) ... Setting up libhdf5-openmpi-fortran-102t64:amd64 (1.10.10+repack-4) ... Setting up libhdf5-openmpi-cpp-103-1t64:amd64 (1.10.10+repack-4) ... Setting up libopenmpi-dev:amd64 (5.0.5-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libscalapack-openmpi2.2:amd64 (2.2.1-5) ... Setting up python3-ufl (2024.2.0-2) ... Setting up libsuperlu-dist8:amd64 (8.2.1+dfsg1-5) ... Setting up libfftw3-mpi-dev:amd64 (3.3.10-2) ... Setting up libhdf5-openmpi-hl-100t64:amd64 (1.10.10+repack-4) ... Setting up libsuperlu-dist-dev:amd64 (8.2.1+dfsg1-5) ... Setting up libhdf5-openmpi-hl-fortran-100t64:amd64 (1.10.10+repack-4) ... Setting up libmumps-5.7:amd64 (5.7.3-3) ... Setting up libhypre-2.31.0:amd64 (2.31.0-3) ... Setting up libscalapack-openmpi-dev:amd64 (2.2.1-5) ... Setting up mpi-default-dev (1.17) ... Setting up libhdf5-openmpi-hl-cpp-100t64:amd64 (1.10.10+repack-4) ... Setting up libscalapack-mpi-dev:amd64 (2.2.1-5) ... Setting up libhdf5-openmpi-dev (1.10.10+repack-4) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python3-basix (0.9.0-2) ... Setting up libmumps-dev:amd64 (5.7.3-3) ... Setting up libscotch-dev (7.0.5-1) ... Setting up libparpack2-dev:amd64 (3.9.1-1.1+b2) ... Setting up libpetsc-real3.21:amd64 (3.21.6+dfsg1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.21.6 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.21 (libpetsc.so.3.21) in auto mode Setting up libhypre-dev:amd64 (2.31.0-3) ... Setting up libptscotch-dev (7.0.5-1) ... Setting up python3-ffcx (1:0.9.0-2) ... Setting up libboost-mpi1.83-dev (1.83.0-3.2) ... Setting up libboost-mpi-dev (1.83.0.2+b2) ... Setting up libhdf5-mpi-dev (1.10.10+repack-4) ... Setting up libslepc-real3.21 (3.21.2+dfsg1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.21.2 to provide /usr/lib/x86_64-linux-gnu/libslepc.so.3.21 (libslepc.so.3.21) in auto mode Setting up libpetsc3.21-dev-common (3.21.6+dfsg1-2) ... Setting up libpetsc-real3.21-dev:amd64 (3.21.6+dfsg1-2) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.21.6 to provide /usr/lib/x86_64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real to provide /usr/lib/petscdir/3.21 (petsc3.21) in auto mode Setting up libslepc-real3.21-dev (3.21.2+dfsg1-2) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.21.2 to provide /usr/lib/x86_64-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/3.21 (slepc3.21) in auto mode Setting up libadios2-mpi-core-2.10:amd64 (2.10.1+dfsg1-12) ... Setting up libadios2-mpi-c++11-2.10:amd64 (2.10.1+dfsg1-12) ... Setting up libadios2-mpi-core-dev:amd64 (2.10.1+dfsg1-12) ... Setting up libadios2-mpi-plugins:amd64 (2.10.1+dfsg1-12) ... Setting up libdolfinx-real0.9:amd64 (1:0.9.0-2) ... Setting up libadios2-mpi-c++11-dev:amd64 (2.10.1+dfsg1-12) ... Setting up libdolfinx-real-dev:amd64 (1:0.9.0-2) ... Setting up libdolfinx-dev:amd64 (1:0.9.0-2) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/fenicsx-performance-tests-0.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fenicsx-performance-tests_0.9.0-2_source.changes dpkg-buildpackage: info: source package fenicsx-performance-tests dpkg-buildpackage: info: source version 0.9.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Francesco Ballarin dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake --sourcedirectory=src dh_auto_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_clean -O--buildsystem=cmake -O--sourcedirectory=src debian/rules binary dh binary --buildsystem=cmake --sourcedirectory=src dh_update_autotools_config -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf -O--buildsystem=cmake -O--sourcedirectory=src debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0' dh_auto_configure -- -D CMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF ../src -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Checking for Basix hints with /usr/bin/python3 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.1", minimum required is "2.8.1") found components: CXX CMake Warning (dev) at CMakeLists.txt:52 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: QUIET REQUIRED COMPONENTS program_options -- Found boost_program_options 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_program_options-1.83.0 -- [x] libboost_program_options.so.1.83.0 -- [ ] libboost_program_options.a -- Adding boost_program_options dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: program_options -- -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -- Configuring done (2.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0' dh_auto_build -O--buildsystem=cmake -O--sourcedirectory=src cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -B/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/depend make[3]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' [ 18%] Generating Elasticity.c [ 18%] Generating Poisson.c ffcx /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/Poisson.py ffcx /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/Elasticity.py cd /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenicsx-performance-tests-0.9.0/src /build/reproducible-path/fenicsx-performance-tests-0.9.0/src /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/build make[3]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' [ 45%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o [ 45%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o [ 45%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o [ 63%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o [ 63%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o [ 72%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o [ 81%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o [ 90%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/poisson_problem.cpp /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem 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'/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0' debian/tests/run-dolfinx-scaling-test -p /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu ==== elasticity weak scaling (3 processes with ndofs=10000) ==== [2025-12-14 10:00:17.368] [RANK: 0] [info] Using partitioner with 69312 cell data [2025-12-14 10:00:17.369] [RANK: 0] [info] Compute partition of cells across ranks [2025-12-14 10:00:17.369] [RANK: 0] [info] Building mesh dual graph [2025-12-14 10:00:17.369] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2025-12-14 10:00:17.398] [RANK: 0] [info] Build nonlocal part of mesh dual graph [2025-12-14 10:00:17.399] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:00:17.399] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:00:17.399] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 [2025-12-14 10:00:17.401] [RANK: 0] [info] Graph edges (local: 66332, non-local: 962) [2025-12-14 10:00:17.401] [RANK: 0] [info] Compute graph partition using PT-SCOTCH [2025-12-14 10:00:35.067] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2025-12-14 10:00:35.072] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2025-12-14 10:00:35.074] [RANK: 0] [info] Extract basic topology: 70064->70064 [2025-12-14 10:00:35.075] [RANK: 0] [info] Build local dual graph [2025-12-14 10:00:35.075] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2025-12-14 10:00:35.095] [RANK: 0] [info] GPS pseudo-diameter:(120) 16276-575 [2025-12-14 10:00:35.098] [RANK: 0] [info] Create topology (single cell type) [2025-12-14 10:00:35.098] [RANK: 0] [info] Create topology (generalised) [2025-12-14 10:00:35.099] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2025-12-14 10:00:35.099] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2025-12-14 10:00:35.104] [RANK: 0] [info] Compute ghost indices [2025-12-14 10:00:35.104] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 [2025-12-14 10:00:35.104] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 [2025-12-14 10:00:35.106] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2025-12-14 10:00:35.106] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2025-12-14 10:00:35.111] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:00:35.112] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:00:35.112] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:00:35.112] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:00:35.113] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2025-12-14 10:00:35.113] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2025-12-14 10:00:35.113] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 [2025-12-14 10:00:35.114] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:00:35.114] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:00:35.114] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 [2025-12-14 10:00:35.114] [RANK: 0] [info] Checking required entities per dimension [2025-12-14 10:00:35.114] [RANK: 0] [info] Cell type: 0 dofmap: 17516x4 [2025-12-14 10:00:35.117] [RANK: 0] [info] Global index computation [2025-12-14 10:00:35.117] [RANK: 0] [info] Got 1 index_maps [2025-12-14 10:00:35.117] [RANK: 0] [info] Get global indices [2025-12-14 10:00:35.118] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:00:35.118] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (24x19x19) to be refined 0 times [2025-12-14 10:00:35.119] [RANK: 0] [info] Computing mesh entities of dimension 2 [2025-12-14 10:00:35.141] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:00:35.141] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:00:35.204] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:00:35.204] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:00:35.205] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) [2025-12-14 10:00:35.205] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. [2025-12-14 10:00:35.206] [RANK: 0] [info] Checking required entities per dimension [2025-12-14 10:00:35.206] [RANK: 0] [info] Cell type: 0 dofmap: 17516x4 [2025-12-14 10:00:35.209] [RANK: 0] [info] Global index computation [2025-12-14 10:00:35.209] [RANK: 0] [info] Got 1 index_maps [2025-12-14 10:00:35.209] [RANK: 0] [info] Get global indices [2025-12-14 10:00:35.210] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:00:35.210] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:00:35.210] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2025-12-14 10:00:35.210] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2025-12-14 10:00:35.210] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) [2025-12-14 10:00:35.229] [RANK: 0] [info] Column ghost size increased from 218 to 556 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 dolfinx hash: debian_1:0.9.0-2 ufl hash: 475c28073ccb3c02130118a9af65e8309bf276c3 petsc version: Petsc Release Version 3.21.6, Sep 28, 2024 Problem type: elasticity Scaling type: weak Num processes: 3 Num cells: 51984 (52 thousand) Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- [2025-12-14 10:00:35.328] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = -1. -1. -1. Threshold scaling factor for each level not specified = 1. AGG specific options Number of levels of aggressive coarsening 1 Square graph aggressive coarsening Number smoothing steps 1 Complexity: grid = 1.095 operator = 1.39146 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 3 MPI processes type: bjacobi number of blocks = 3 Local solver information for first block is in the following KSP and PC objects on rank 0: Use -mg_coarse_ksp_view ::ascii_info_detail to display information for all blocks KSP Object: (mg_coarse_sub_) 1 MPI process type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI process type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.11668 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=234, cols=234, bs=6 package used to perform factorization: petsc total: nonzeros=48924, allocated nonzeros=48924 using I-node routines: found 59 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=234, cols=234, bs=6 total: nonzeros=43812, allocated nonzeros=43812 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 77 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=234, cols=234, bs=6 total: nonzeros=43812, allocated nonzeros=43812 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 77 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.283448, max 3.11793 eigenvalues provided (min 0.032168, max 2.83448) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=2616, cols=2616, bs=6 total: nonzeros=446112, allocated nonzeros=446112 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 278 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.257635, max 2.83399 eigenvalues provided (min 0.0716069, max 2.57635) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3428 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3428 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 17.760000 17.760000 Build dofmap data | 2 0.000000 0.000000 Build sparsity | 1 0.010000 0.010000 Compute connectivity 2-0 | 1 0.000000 0.000000 Compute dof reordering map | 2 0.000000 0.000000 Compute entities of dim = 2 | 1 0.080000 0.080000 Compute graph partition (SCOTCH) | 1 17.670000 17.670000 Compute local part of mesh dual graph (mixed) | 2 0.030000 0.060000 Compute local-to-local map | 1 0.010000 0.010000 Compute non-local part of mesh dual graph | 1 0.020000 0.020000 Compute-local-to-global links for global/local adjacency list | 1 0.010000 0.010000 Distribute fixed-degree adjacency list to destination ranks | 1 0.010000 0.010000 Distribute row-wise data (scalable) | 1 0.000000 0.000000 GPS: create_level_structure | 6 0.000000 0.000000 Gibbs-Poole-Stockmeyer ordering | 1 0.000000 0.000000 Init MPI | 1 0.070000 0.070000 Init PETSc | 1 0.000000 0.000000 Init dofmap from element dofmap | 2 0.000000 0.000000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 0.440000 0.440000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 SCOTCH: call SCOTCH_dgraphPart | 1 17.670000 17.670000 SparsityPattern::finalize | 1 0.010000 0.010000 Topology: create | 1 0.020000 0.020000 Topology: determine shared index ownership | 1 0.010000 0.010000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 ZZZ Assemble matrix | 1 0.080000 0.080000 ZZZ Assemble vector | 1 0.010000 0.010000 ZZZ Create Mesh | 1 17.760000 17.760000 ZZZ Create RHS function | 1 0.010000 0.010000 ZZZ Create boundary conditions | 1 0.010000 0.010000 ZZZ Create facets and facet->cell connectivity | 1 0.080000 0.080000 ZZZ Create forms | 1 0.000000 0.000000 ZZZ Create near-nullspace | 1 0.000000 0.000000 ZZZ FunctionSpace | 1 0.000000 0.000000 ZZZ Solve | 1 0.450000 0.450000 *** Number of Krylov iterations: 18 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos15-amd64 with 3 processes, by pbuilder1 on Sun Dec 14 10:00:35 2025 Using Petsc Release Version 3.21.6, Sep 28, 2024 Max Max/Min Avg Total Time (sec): 1.841e+01 1.000 1.841e+01 Objects: 0.000e+00 0.000 0.000e+00 Flops: 2.183e+08 1.083 2.104e+08 6.311e+08 Flops/sec: 1.186e+07 1.083 1.143e+07 3.428e+07 MPI Msg Count: 7.940e+02 1.043 7.730e+02 2.319e+03 MPI Msg Len (bytes): 7.173e+06 1.393 8.018e+03 1.859e+07 MPI Reductions: 4.760e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.8409e+01 100.0% 6.3108e+08 100.0% 2.319e+03 100.0% 8.018e+03 100.0% 4.580e+02 96.2% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 111 1.0 3.5475e-02 3.4 0.00e+00 0.0 1.9e+02 4.0e+00 1.1e+02 0 0 8 0 23 0 0 8 0 24 0 BuildTwoSidedF 84 1.0 3.5430e-02 3.4 0.00e+00 0.0 1.1e+02 5.2e+04 8.4e+01 0 0 5 29 18 0 0 5 29 18 0 MatMult 190 1.0 5.7800e-02 1.0 1.17e+08 1.1 1.1e+03 5.7e+03 0.0e+00 0 53 49 35 0 0 53 49 35 0 5773 MatMultAdd 38 1.0 6.1474e-03 1.1 9.52e+06 1.1 1.5e+02 1.6e+03 0.0e+00 0 4 7 1 0 0 4 7 1 0 4522 MatMultTranspose 38 1.0 8.4730e-03 1.0 9.53e+06 1.1 1.5e+02 1.6e+03 0.0e+00 0 4 7 1 0 0 4 7 1 0 3285 MatSolve 19 0.0 1.5152e-03 0.0 1.85e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1224 MatLUFactorSym 1 1.0 2.5426e-03 226.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 2.9106e-03 1713.2 6.58e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2261 MatScale 6 1.0 6.1509e-04 1.0 6.04e+05 1.1 1.2e+01 1.6e+03 0.0e+00 0 0 1 0 0 0 0 1 0 0 2871 MatResidual 38 1.0 9.8288e-03 1.0 2.27e+07 1.1 2.3e+02 5.4e+03 0.0e+00 0 10 10 7 0 0 10 10 7 0 6563 MatAssemblyBegin 47 1.0 4.6639e-02 2.0 0.00e+00 0.0 1.1e+02 5.2e+04 2.4e+01 0 0 5 29 5 0 0 5 29 5 0 MatAssemblyEnd 47 1.0 2.2283e-02 1.0 9.34e+04 1.9 1.8e+02 4.8e+02 9.5e+01 0 0 8 0 20 0 0 8 0 21 10 MatGetRowIJ 1 0.0 4.7213e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 3.7272e-03 1.0 0.00e+00 0.0 1.4e+01 2.7e+04 3.0e+01 0 0 1 2 6 0 0 1 2 7 0 MatGetOrdering 1 0.0 1.3604e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 8.9048e-04 1.0 0.00e+00 0.0 1.2e+02 8.3e+02 3.7e+01 0 0 5 1 8 0 0 5 1 8 0 MatZeroEntries 2 1.0 1.5084e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 1.0053e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 4 1.0 5.5257e-03 1.0 1.18e+05 1.1 2.4e+01 4.0e+02 1.4e+01 0 0 1 0 3 0 0 1 0 3 63 MatTranspose 9 1.0 7.7718e-03 1.1 0.00e+00 0.0 1.0e+02 1.8e+03 2.7e+01 0 0 5 1 6 0 0 5 1 6 0 MatMatMultSym 6 1.0 3.5117e-02 1.1 0.00e+00 0.0 6.0e+01 1.0e+04 2.0e+01 0 0 3 3 4 0 0 3 3 4 0 MatMatMultNum 2 1.0 7.0397e-03 1.0 7.18e+06 1.1 1.2e+01 3.3e+04 2.0e+00 0 3 1 2 0 0 3 1 2 0 2894 MatPtAPSymbolic 2 1.0 1.4561e-01 1.0 0.00e+00 0.0 7.2e+01 4.9e+04 1.4e+01 1 0 3 19 3 1 0 3 19 3 0 MatPtAPNumeric 2 1.0 1.2877e-01 1.0 6.24e+07 1.1 4.8e+01 6.2e+04 1.2e+01 1 28 2 16 3 1 28 2 16 3 1361 MatTrnMatMultSym 1 1.0 2.1153e-02 1.0 0.00e+00 0.0 4.2e+01 3.0e+04 1.3e+01 0 0 2 7 3 0 0 2 7 3 0 MatGetLocalMat 7 1.0 2.1514e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 6 1.0 2.4723e-03 1.1 0.00e+00 0.0 8.4e+01 4.5e+04 0.0e+00 0 0 4 20 0 0 0 4 20 0 0 VecMDot 20 1.0 9.1337e-04 1.3 1.22e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 3928 VecTDot 38 1.0 7.0456e-04 1.3 7.82e+05 1.1 0.0e+00 0.0e+00 3.8e+01 0 0 0 0 8 0 0 0 0 8 3236 VecNorm 41 1.0 6.3066e-04 1.1 6.35e+05 1.1 0.0e+00 0.0e+00 4.1e+01 0 0 0 0 9 0 0 0 0 9 2945 VecScale 22 1.0 8.2561e-05 1.5 1.22e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 4346 VecCopy 118 1.0 3.8275e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 134 1.0 2.0054e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 38 1.0 4.4217e-04 1.1 7.63e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 5033 VecAYPX 245 1.0 1.4620e-03 1.0 2.04e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 4089 VecAXPBYCZ 76 1.0 5.3627e-04 1.1 2.11e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 11556 VecMAXPY 22 1.0 3.1414e-04 1.1 1.45e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 13497 VecAssemblyBegin 61 1.0 5.5345e-04 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 0 0 0 0 13 0 0 0 0 13 0 VecAssemblyEnd 61 1.0 3.6034e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 174 1.0 1.4364e-03 1.1 9.67e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1976 VecScatterBegin 330 1.0 1.4545e-03 1.1 0.00e+00 0.0 1.7e+03 4.5e+03 0.0e+00 0 0 74 41 0 0 0 74 41 0 0 VecScatterEnd 330 1.0 8.8189e-03 1.5 1.21e+04 1.5 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 3 VecNormalize 22 1.0 3.7233e-04 1.2 3.67e+05 1.1 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 5 0 0 0 0 5 2891 SFSetGraph 27 1.0 1.2910e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 27 1.0 6.7689e-04 1.1 0.00e+00 0.0 2.7e+02 4.7e+02 2.7e+01 0 0 11 1 6 0 0 11 1 6 0 SFBcastBegin 9 1.0 3.3806e-05 1.0 0.00e+00 0.0 5.4e+01 1.5e+03 0.0e+00 0 0 2 0 0 0 0 2 0 0 0 SFBcastEnd 9 1.0 3.2073e-05 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 3 1.0 4.2824e-05 1.1 0.00e+00 0.0 1.5e+01 6.4e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 SFReduceEnd 3 1.0 9.5200e-06 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 342 1.0 5.3169e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 342 1.0 1.1394e-04 1.4 1.21e+04 1.5 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 263 KSPSetUp 7 1.0 1.8573e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 8.0919e-02 1.0 1.32e+08 1.1 1.3e+03 4.8e+03 7.6e+01 0 61 57 34 16 0 61 57 34 17 4750 KSPGMRESOrthog 20 1.0 1.1905e-03 1.2 2.45e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 6027 PCSetUp_GAMG+ 1 1.0 3.5917e-01 1.0 8.54e+07 1.1 9.4e+02 1.2e+04 3.3e+02 2 38 40 60 69 2 38 40 60 72 670 PCGAMGCreateG 2 1.0 1.3009e-02 1.0 1.55e+05 1.1 1.4e+02 1.6e+03 5.0e+01 0 0 6 1 11 0 0 6 1 11 35 GAMG Coarsen 4 1.0 2.3413e-02 1.0 0.00e+00 0.0 1.9e+02 7.8e+03 5.4e+01 0 0 8 8 11 0 0 8 8 12 0 GAMG MIS/Agg 2 1.0 2.2167e-02 1.0 0.00e+00 0.0 1.6e+02 8.4e+03 5.0e+01 0 0 7 7 11 0 0 7 7 11 0 PCGAMGProl 2 1.0 8.0105e-03 1.0 0.00e+00 0.0 2.6e+02 3.1e+03 7.6e+01 0 0 11 4 16 0 0 11 4 17 0 GAMG Prol-col 2 1.0 2.9402e-03 1.0 0.00e+00 0.0 2.2e+02 2.6e+03 5.6e+01 0 0 10 3 12 0 0 10 3 12 0 GAMG Prol-lift 2 1.0 4.8409e-03 1.0 0.00e+00 0.0 3.6e+01 6.2e+03 1.2e+01 0 0 2 1 3 0 0 2 1 3 0 PCGAMGOptProl 2 1.0 3.5829e-02 1.0 2.28e+07 1.1 1.9e+02 8.7e+03 6.6e+01 0 10 8 9 14 0 10 8 9 14 1814 GAMG smooth 2 1.0 2.6697e-02 1.0 7.74e+06 1.1 7.2e+01 1.4e+04 2.4e+01 0 3 3 5 5 0 3 3 5 5 825 PCGAMGCreateL 2 1.0 2.7826e-01 1.0 6.24e+07 1.1 1.5e+02 4.7e+04 8.1e+01 2 28 6 37 17 2 28 6 37 18 630 GAMG PtAP 2 1.0 2.7408e-01 1.0 6.24e+07 1.1 1.2e+02 5.4e+04 2.6e+01 1 28 5 35 5 1 28 5 35 6 639 GAMG Reduce 1 1.0 4.3121e-03 1.0 0.00e+00 0.0 2.9e+01 1.4e+04 5.5e+01 0 0 1 2 12 0 0 1 2 12 0 PCGAMG Squ l00 1 1.0 2.1157e-02 1.0 0.00e+00 0.0 4.2e+01 3.0e+04 1.3e+01 0 0 2 7 3 0 0 2 7 3 0 PCGAMG Gal l00 1 1.0 1.8275e-01 1.0 3.97e+07 1.0 6.0e+01 7.6e+04 1.3e+01 1 19 3 25 3 1 19 3 25 3 641 PCGAMG Opt l00 1 1.0 1.7373e-02 1.0 5.09e+06 1.0 3.6e+01 2.1e+04 1.1e+01 0 2 2 4 2 0 2 2 4 2 864 PCGAMG Gal l01 1 1.0 9.1324e-02 1.0 2.28e+07 1.4 6.0e+01 3.2e+04 1.3e+01 0 9 3 10 3 0 9 3 10 3 635 PCGAMG Opt l01 1 1.0 5.5265e-03 1.0 2.13e+06 1.4 3.6e+01 6.9e+03 1.1e+01 0 1 2 1 2 0 1 2 1 2 969 PCSetUp 2 1.0 3.6481e-01 1.0 8.54e+07 1.1 9.4e+02 1.2e+04 3.3e+02 2 39 40 60 69 2 39 40 60 72 678 PCSetUpOnBlocks 19 1.0 5.6970e-03 44.5 6.58e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1155 PCApply 19 1.0 7.2748e-02 1.0 1.15e+08 1.1 1.2e+03 4.5e+03 1.9e+01 0 53 52 29 4 0 53 52 29 4 4581 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 11 11 Matrix 86 86 Matrix Coarsen 2 2 Matrix Null Space 1 1 Index Set 66 66 IS L to G Mapping 5 5 Vector 183 183 Star Forest Graph 35 35 Krylov Solver 7 7 Preconditioner 7 7 Viewer 2 2 PetscRandom 2 2 Distributed Mesh 4 4 Discrete System 4 4 Weak Form 4 4 ======================================================================================================================== Average time to get PetscTime(): 4.44e-08 Average time for MPI_Barrier(): 1.7066e-06 Average time for zero size MPI_Send(): 8.84667e-07 #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --prefix=/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.21.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.21.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.21.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.21.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-10-20 10:17:39 on reproducible Machine characteristics: Linux-6.1.0-26-amd64-x86_64-with-glibc2.40 Using PETSc directory: /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.21.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.21.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/14 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 4 unused database options. They are: Option left: name:--ndofs value: 10000 source: command line Option left: name:--problem_type value: elasticity source: command line Option left: name:--scaling_type value: weak source: command line Option left: name:-mg_levels_esteig_ksp_type value: cg source: command line ==== elasticity strong scaling (3 processes with ndofs=30000) ==== [2025-12-14 10:00:36.195] [RANK: 0] [info] Using partitioner with 69312 cell data [2025-12-14 10:00:36.196] [RANK: 0] [info] Compute partition of cells across ranks [2025-12-14 10:00:36.196] [RANK: 0] [info] Building mesh dual graph [2025-12-14 10:00:36.196] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2025-12-14 10:00:36.216] [RANK: 0] [info] Build nonlocal part of mesh dual graph [2025-12-14 10:00:36.216] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:00:36.216] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:00:36.216] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 [2025-12-14 10:00:36.217] [RANK: 0] [info] Graph edges (local: 66332, non-local: 962) [2025-12-14 10:00:36.217] [RANK: 0] [info] Compute graph partition using PT-SCOTCH [2025-12-14 10:00:44.023] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2025-12-14 10:00:44.042] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2025-12-14 10:00:44.050] [RANK: 0] [info] Extract basic topology: 68968->68968 [2025-12-14 10:00:44.050] [RANK: 0] [info] Build local dual graph [2025-12-14 10:00:44.050] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2025-12-14 10:00:44.063] [RANK: 0] [info] GPS pseudo-diameter:(120) 16769-1389 [2025-12-14 10:00:44.065] [RANK: 0] [info] Create topology (single cell type) [2025-12-14 10:00:44.065] [RANK: 0] [info] Create topology (generalised) [2025-12-14 10:00:44.066] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2025-12-14 10:00:44.066] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2025-12-14 10:00:44.070] [RANK: 0] [info] Compute ghost indices [2025-12-14 10:00:44.070] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 [2025-12-14 10:00:44.070] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 [2025-12-14 10:00:44.071] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2025-12-14 10:00:44.071] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2025-12-14 10:00:44.075] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:00:44.075] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:00:44.075] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:00:44.075] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:00:44.076] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2025-12-14 10:00:44.076] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2025-12-14 10:00:44.076] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 [2025-12-14 10:00:44.077] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:00:44.077] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:00:44.077] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 [2025-12-14 10:00:44.077] [RANK: 0] [info] Checking required entities per dimension [2025-12-14 10:00:44.077] [RANK: 0] [info] Cell type: 0 dofmap: 17242x4 [2025-12-14 10:00:44.078] [RANK: 0] [info] Global index computation [2025-12-14 10:00:44.078] [RANK: 0] [info] Got 1 index_maps [2025-12-14 10:00:44.079] [RANK: 0] [info] Get global indices [2025-12-14 10:00:44.079] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:00:44.079] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (24x19x19) to be refined 0 times [2025-12-14 10:00:44.080] [RANK: 0] [info] Computing mesh entities of dimension 2 [2025-12-14 10:00:44.091] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:00:44.091] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:00:44.143] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:00:44.143] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:00:44.143] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) [2025-12-14 10:00:44.143] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. [2025-12-14 10:00:44.144] [RANK: 0] [info] Checking required entities per dimension [2025-12-14 10:00:44.144] [RANK: 0] [info] Cell type: 0 dofmap: 17242x4 [2025-12-14 10:00:44.145] [RANK: 0] [info] Global index computation [2025-12-14 10:00:44.145] [RANK: 0] [info] Got 1 index_maps [2025-12-14 10:00:44.145] [RANK: 0] [info] Get global indices [2025-12-14 10:00:44.146] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:00:44.146] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:00:44.146] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2025-12-14 10:00:44.146] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2025-12-14 10:00:44.146] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) [2025-12-14 10:00:44.158] [RANK: 0] [info] Column ghost size increased from 217 to 558 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 dolfinx hash: debian_1:0.9.0-2 ufl hash: 475c28073ccb3c02130118a9af65e8309bf276c3 petsc version: Petsc Release Version 3.21.6, Sep 28, 2024 Problem type: elasticity Scaling type: strong Num processes: 3 Num cells: 51984 (52 thousand) Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- [2025-12-14 10:00:44.246] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = -1. -1. -1. Threshold scaling factor for each level not specified = 1. AGG specific options Number of levels of aggressive coarsening 1 Square graph aggressive coarsening Number smoothing steps 1 Complexity: grid = 1.0944 operator = 1.39086 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 3 MPI processes type: bjacobi number of blocks = 3 Local solver information for first block is in the following KSP and PC objects on rank 0: Use -mg_coarse_ksp_view ::ascii_info_detail to display information for all blocks KSP Object: (mg_coarse_sub_) 1 MPI process type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI process type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.12755 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=228, cols=228, bs=6 package used to perform factorization: petsc total: nonzeros=47736, allocated nonzeros=47736 using I-node routines: found 56 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=228, cols=228, bs=6 total: nonzeros=42336, allocated nonzeros=42336 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 72 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=228, cols=228, bs=6 total: nonzeros=42336, allocated nonzeros=42336 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 72 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.307978, max 3.38776 eigenvalues provided (min 0.0426899, max 3.07978) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=2604, cols=2604, bs=6 total: nonzeros=446832, allocated nonzeros=446832 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 270 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.258593, max 2.84453 eigenvalues provided (min 0.0736991, max 2.58593) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3377 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3377 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 7.890000 7.890000 Build dofmap data | 2 0.005000 0.010000 Build sparsity | 1 0.000000 0.000000 Compute connectivity 2-0 | 1 0.000000 0.000000 Compute dof reordering map | 2 0.000000 0.000000 Compute entities of dim = 2 | 1 0.060000 0.060000 Compute graph partition (SCOTCH) | 1 7.810000 7.810000 Compute local part of mesh dual graph (mixed) | 2 0.020000 0.040000 Compute local-to-local map | 1 0.000000 0.000000 Compute non-local part of mesh dual graph | 1 0.010000 0.010000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute fixed-degree adjacency list to destination ranks | 1 0.020000 0.020000 Distribute row-wise data (scalable) | 1 0.000000 0.000000 GPS: create_level_structure | 4 0.000000 0.000000 Gibbs-Poole-Stockmeyer ordering | 1 0.000000 0.000000 Init MPI | 1 0.030000 0.030000 Init PETSc | 1 0.000000 0.000000 Init dofmap from element dofmap | 2 0.005000 0.010000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 0.450000 0.450000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 SCOTCH: call SCOTCH_dgraphPart | 1 7.810000 7.810000 SparsityPattern::finalize | 1 0.010000 0.010000 Topology: create | 1 0.010000 0.010000 Topology: determine shared index ownership | 1 0.000000 0.000000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.000000 0.000000 ZZZ Assemble matrix | 1 0.070000 0.070000 ZZZ Assemble vector | 1 0.010000 0.010000 ZZZ Create Mesh | 1 7.890000 7.890000 ZZZ Create RHS function | 1 0.010000 0.010000 ZZZ Create boundary conditions | 1 0.000000 0.000000 ZZZ Create facets and facet->cell connectivity | 1 0.060000 0.060000 ZZZ Create forms | 1 0.000000 0.000000 ZZZ Create near-nullspace | 1 0.000000 0.000000 ZZZ FunctionSpace | 1 0.000000 0.000000 ZZZ Solve | 1 0.450000 0.450000 *** Number of Krylov iterations: 19 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos15-amd64 with 3 processes, by pbuilder1 on Sun Dec 14 10:00:44 2025 Using Petsc Release Version 3.21.6, Sep 28, 2024 Max Max/Min Avg Total Time (sec): 8.501e+00 1.000 8.501e+00 Objects: 0.000e+00 0.000 0.000e+00 Flops: 2.238e+08 1.052 2.172e+08 6.515e+08 Flops/sec: 2.632e+07 1.052 2.555e+07 7.664e+07 MPI Msg Count: 8.180e+02 1.043 7.963e+02 2.389e+03 MPI Msg Len (bytes): 7.878e+06 1.521 7.875e+03 1.881e+07 MPI Reductions: 4.800e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 8.5010e+00 100.0% 6.5147e+08 100.0% 2.389e+03 100.0% 7.875e+03 100.0% 4.620e+02 96.2% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 111 1.0 3.8906e-02 22.9 0.00e+00 0.0 1.9e+02 4.0e+00 1.1e+02 0 0 8 0 23 0 0 8 0 24 0 BuildTwoSidedF 84 1.0 3.8775e-02 18.4 0.00e+00 0.0 1.1e+02 5.1e+04 8.4e+01 0 0 4 29 18 0 0 4 29 18 0 MatMult 199 1.0 5.7234e-02 1.0 1.21e+08 1.1 1.2e+03 5.7e+03 0.0e+00 1 54 50 36 0 1 54 50 36 0 6111 MatMultAdd 40 1.0 6.6994e-03 1.1 9.81e+06 1.0 1.6e+02 1.6e+03 0.0e+00 0 4 7 1 0 0 4 7 1 0 4374 MatMultTranspose 40 1.0 8.8504e-03 1.1 9.82e+06 1.0 1.6e+02 1.6e+03 0.0e+00 0 5 7 1 0 0 5 7 1 0 3314 MatSolve 20 0.0 1.2482e-03 0.0 1.90e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1526 MatLUFactorSym 1 1.0 1.8061e-03 157.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 2.7172e-03 1986.3 6.32e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2325 MatScale 6 1.0 5.6328e-04 1.0 5.92e+05 1.0 1.2e+01 1.6e+03 0.0e+00 0 0 1 0 0 0 0 1 0 0 3139 MatResidual 40 1.0 9.9921e-03 1.0 2.36e+07 1.1 2.4e+02 5.4e+03 0.0e+00 0 10 10 7 0 0 10 10 7 0 6799 MatAssemblyBegin 47 1.0 4.8873e-02 2.9 0.00e+00 0.0 1.1e+02 5.1e+04 2.4e+01 0 0 4 29 5 0 0 4 29 5 0 MatAssemblyEnd 47 1.0 2.3650e-02 1.0 1.10e+05 2.5 1.8e+02 4.8e+02 9.5e+01 0 0 8 0 20 0 0 8 0 21 9 MatGetRowIJ 1 0.0 3.5872e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 3.7080e-03 1.0 0.00e+00 0.0 1.4e+01 2.7e+04 3.0e+01 0 0 1 2 6 0 0 1 2 6 0 MatGetOrdering 1 0.0 9.1238e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 8.7271e-04 1.0 0.00e+00 0.0 1.2e+02 8.4e+02 3.7e+01 0 0 5 1 8 0 0 5 1 8 0 MatZeroEntries 2 1.0 1.4426e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 1.0892e-03 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 4 1.0 6.7153e-03 1.0 1.16e+05 1.0 2.4e+01 4.0e+02 1.4e+01 0 0 1 0 3 0 0 1 0 3 52 MatTranspose 9 1.0 8.0219e-03 1.3 0.00e+00 0.0 1.0e+02 1.9e+03 2.7e+01 0 0 4 1 6 0 0 4 1 6 0 MatMatMultSym 6 1.0 3.4638e-02 1.0 0.00e+00 0.0 6.0e+01 1.0e+04 2.0e+01 0 0 3 3 4 0 0 3 3 4 0 MatMatMultNum 2 1.0 6.8181e-03 1.0 7.09e+06 1.1 1.2e+01 3.2e+04 2.0e+00 0 3 1 2 0 0 3 1 2 0 2989 MatPtAPSymbolic 2 1.0 1.4877e-01 1.0 0.00e+00 0.0 7.2e+01 4.8e+04 1.4e+01 2 0 3 18 3 2 0 3 18 3 0 MatPtAPNumeric 2 1.0 1.3499e-01 1.0 6.33e+07 1.1 4.8e+01 6.0e+04 1.2e+01 2 27 2 15 2 2 27 2 15 3 1302 MatTrnMatMultSym 1 1.0 1.9762e-02 1.0 0.00e+00 0.0 4.2e+01 3.0e+04 1.3e+01 0 0 2 7 3 0 0 2 7 3 0 MatGetLocalMat 7 1.0 2.0483e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 6 1.0 2.4867e-03 1.1 0.00e+00 0.0 8.4e+01 4.5e+04 0.0e+00 0 0 4 20 0 0 0 4 20 0 0 VecMDot 20 1.0 1.0527e-03 1.5 1.20e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 3407 VecTDot 40 1.0 8.8732e-04 1.5 8.10e+05 1.0 0.0e+00 0.0e+00 4.0e+01 0 0 0 0 8 0 0 0 0 9 2705 VecNorm 42 1.0 8.6320e-04 1.6 6.46e+05 1.0 0.0e+00 0.0e+00 4.2e+01 0 0 0 0 9 0 0 0 0 9 2221 VecScale 22 1.0 6.9024e-05 1.6 1.20e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 5196 VecCopy 124 1.0 3.8480e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 141 1.0 1.7416e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 40 1.0 3.7603e-04 1.1 7.92e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 6237 VecAYPX 258 1.0 1.4062e-03 1.0 2.12e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 4478 VecAXPBYCZ 80 1.0 5.2944e-04 1.0 2.19e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 12316 VecMAXPY 22 1.0 2.9666e-04 1.0 1.42e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 14288 VecAssemblyBegin 61 1.0 4.8125e-04 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 0 0 0 0 12 0 0 0 0 13 0 VecAssemblyEnd 61 1.0 3.4694e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 182 1.0 1.2741e-03 1.1 9.96e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2329 VecScatterBegin 343 1.0 1.3185e-03 1.1 0.00e+00 0.0 1.8e+03 4.5e+03 0.0e+00 0 0 75 43 0 0 0 75 43 0 0 VecScatterEnd 343 1.0 7.4083e-03 1.6 1.22e+04 1.7 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 4 VecNormalize 22 1.0 3.1681e-04 1.1 3.61e+05 1.0 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 5 0 0 0 0 5 3396 SFSetGraph 27 1.0 1.3206e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 27 1.0 6.4675e-04 1.0 0.00e+00 0.0 2.7e+02 4.7e+02 2.7e+01 0 0 11 1 6 0 0 11 1 6 0 SFBcastBegin 9 1.0 2.7091e-05 1.0 0.00e+00 0.0 5.4e+01 1.5e+03 0.0e+00 0 0 2 0 0 0 0 2 0 0 0 SFBcastEnd 9 1.0 3.3513e-05 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 3 1.0 3.8112e-05 1.0 0.00e+00 0.0 1.5e+01 6.4e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 SFReduceEnd 3 1.0 9.3200e-06 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 355 1.0 5.3680e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 355 1.0 9.2867e-05 1.1 1.22e+04 1.7 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 335 KSPSetUp 7 1.0 1.7499e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 7.9020e-02 1.0 1.37e+08 1.0 1.4e+03 4.8e+03 8.0e+01 1 62 58 35 17 1 62 58 35 17 5116 KSPGMRESOrthog 20 1.0 1.3206e-03 1.4 2.41e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 5431 PCSetUp_GAMG+ 1 1.0 3.6527e-01 1.0 8.59e+07 1.1 9.4e+02 1.2e+04 3.3e+02 4 37 39 58 69 4 37 39 58 71 660 PCGAMGCreateG 2 1.0 1.4173e-02 1.0 1.53e+05 1.0 1.4e+02 1.6e+03 5.0e+01 0 0 6 1 10 0 0 6 1 11 32 GAMG Coarsen 4 1.0 2.1949e-02 1.0 0.00e+00 0.0 1.9e+02 8.0e+03 5.4e+01 0 0 8 8 11 0 0 8 8 12 0 GAMG MIS/Agg 2 1.0 2.0742e-02 1.0 0.00e+00 0.0 1.6e+02 8.6e+03 5.0e+01 0 0 7 7 10 0 0 7 7 11 0 PCGAMGProl 2 1.0 7.2128e-03 1.0 0.00e+00 0.0 2.6e+02 3.1e+03 7.6e+01 0 0 11 4 16 0 0 11 4 16 0 GAMG Prol-col 2 1.0 2.7508e-03 1.0 0.00e+00 0.0 2.2e+02 2.6e+03 5.6e+01 0 0 9 3 12 0 0 9 3 12 0 GAMG Prol-lift 2 1.0 4.2376e-03 1.0 0.00e+00 0.0 3.6e+01 6.6e+03 1.2e+01 0 0 2 1 2 0 0 2 1 3 0 PCGAMGOptProl 2 1.0 3.4356e-02 1.0 2.24e+07 1.1 1.9e+02 8.6e+03 6.6e+01 0 10 8 9 14 0 10 8 9 14 1892 GAMG smooth 2 1.0 2.5592e-02 1.0 7.65e+06 1.1 7.2e+01 1.4e+04 2.4e+01 0 3 3 5 5 0 3 3 5 5 861 PCGAMGCreateL 2 1.0 2.8700e-01 1.0 6.33e+07 1.1 1.5e+02 4.5e+04 8.1e+01 3 27 6 36 17 3 27 6 36 18 612 GAMG PtAP 2 1.0 2.8284e-01 1.0 6.33e+07 1.1 1.2e+02 5.3e+04 2.6e+01 3 27 5 34 5 3 27 5 34 6 621 GAMG Reduce 1 1.0 4.1520e-03 1.0 0.00e+00 0.0 2.9e+01 1.4e+04 5.5e+01 0 0 1 2 11 0 0 1 2 12 0 PCGAMG Squ l00 1 1.0 1.9764e-02 1.0 0.00e+00 0.0 4.2e+01 3.0e+04 1.3e+01 0 0 2 7 3 0 0 2 7 3 0 PCGAMG Gal l00 1 1.0 1.8571e-01 1.0 3.98e+07 1.0 6.0e+01 7.5e+04 1.3e+01 2 18 3 24 3 2 18 3 24 3 633 PCGAMG Opt l00 1 1.0 1.6854e-02 1.0 5.02e+06 1.0 3.6e+01 2.2e+04 1.1e+01 0 2 2 4 2 0 2 2 4 2 891 PCGAMG Gal l01 1 1.0 9.7170e-02 1.0 2.44e+07 1.5 6.0e+01 3.1e+04 1.3e+01 1 9 3 10 3 1 9 3 10 3 599 PCGAMG Opt l01 1 1.0 5.2305e-03 1.0 2.12e+06 1.4 3.6e+01 6.5e+03 1.1e+01 0 1 2 1 2 0 1 2 1 2 1025 PCSetUp 2 1.0 3.6990e-01 1.0 8.59e+07 1.1 9.4e+02 1.2e+04 3.3e+02 4 38 39 58 69 4 38 39 58 71 669 PCSetUpOnBlocks 20 1.0 4.7011e-03 44.0 6.32e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1344 PCApply 20 1.0 7.0595e-02 1.0 1.19e+08 1.0 1.3e+03 4.4e+03 2.0e+01 1 54 54 30 4 1 54 54 30 4 4963 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 11 11 Matrix 86 86 Matrix Coarsen 2 2 Matrix Null Space 1 1 Index Set 66 66 IS L to G Mapping 5 5 Vector 183 183 Star Forest Graph 35 35 Krylov Solver 7 7 Preconditioner 7 7 Viewer 2 2 PetscRandom 2 2 Distributed Mesh 4 4 Discrete System 4 4 Weak Form 4 4 ======================================================================================================================== Average time to get PetscTime(): 4.75e-08 Average time for MPI_Barrier(): 1.6186e-06 Average time for zero size MPI_Send(): 9.04667e-07 #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --prefix=/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.21.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.21.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.21.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.21.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-10-20 10:17:39 on reproducible Machine characteristics: Linux-6.1.0-26-amd64-x86_64-with-glibc2.40 Using PETSc directory: /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.21.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.21.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/14 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 4 unused database options. They are: Option left: name:--ndofs value: 30000 source: command line Option left: name:--problem_type value: elasticity source: command line Option left: name:--scaling_type value: strong source: command line Option left: name:-mg_levels_esteig_ksp_type value: cg source: command line ==== poisson weak scaling (3 processes with ndofs=10000) ==== [2025-12-14 10:00:45.125] [RANK: 0] [info] Using partitioner with 216000 cell data [2025-12-14 10:00:45.127] [RANK: 0] [info] Compute partition of cells across ranks [2025-12-14 10:00:45.127] [RANK: 0] [info] Building mesh dual graph [2025-12-14 10:00:45.127] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2025-12-14 10:00:45.170] [RANK: 0] [info] Build nonlocal part of mesh dual graph [2025-12-14 10:00:45.174] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:00:45.174] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:00:45.174] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 [2025-12-14 10:00:45.176] [RANK: 0] [info] Graph edges (local: 210000, non-local: 1800) [2025-12-14 10:00:45.176] [RANK: 0] [info] Compute graph partition using PT-SCOTCH [2025-12-14 10:01:03.952] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2025-12-14 10:01:03.952] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2025-12-14 10:01:03.959] [RANK: 0] [info] Extract basic topology: 212876->212876 [2025-12-14 10:01:03.959] [RANK: 0] [info] Build local dual graph [2025-12-14 10:01:03.959] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2025-12-14 10:01:04.022] [RANK: 0] [info] GPS pseudo-diameter:(135) 827-53076 [2025-12-14 10:01:04.034] [RANK: 0] [info] Create topology (single cell type) [2025-12-14 10:01:04.034] [RANK: 0] [info] Create topology (generalised) [2025-12-14 10:01:04.046] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2025-12-14 10:01:04.046] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2025-12-14 10:01:04.063] [RANK: 0] [info] Compute ghost indices [2025-12-14 10:01:04.063] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 [2025-12-14 10:01:04.064] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 [2025-12-14 10:01:04.068] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2025-12-14 10:01:04.069] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2025-12-14 10:01:04.087] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:01:04.088] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:01:04.088] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:01:04.088] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:01:04.096] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2025-12-14 10:01:04.096] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2025-12-14 10:01:04.096] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 [2025-12-14 10:01:04.097] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:01:04.097] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:01:04.097] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 [2025-12-14 10:01:04.098] [RANK: 0] [info] Checking required entities per dimension [2025-12-14 10:01:04.098] [RANK: 0] [info] Cell type: 0 dofmap: 53219x4 [2025-12-14 10:01:04.107] [RANK: 0] [info] Global index computation [2025-12-14 10:01:04.107] [RANK: 0] [info] Got 1 index_maps [2025-12-14 10:01:04.108] [RANK: 0] [info] Get global indices [2025-12-14 10:01:04.108] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:01:04.108] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (30x30x30) to be refined 0 times [2025-12-14 10:01:04.112] [RANK: 0] [info] Computing mesh entities of dimension 2 [2025-12-14 10:01:04.186] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:01:04.186] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:01:04.301] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:01:04.301] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:01:04.305] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) [2025-12-14 10:01:04.305] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. [2025-12-14 10:01:04.307] [RANK: 0] [info] Checking required entities per dimension [2025-12-14 10:01:04.308] [RANK: 0] [info] Cell type: 0 dofmap: 53219x4 [2025-12-14 10:01:04.317] [RANK: 0] [info] Global index computation [2025-12-14 10:01:04.317] [RANK: 0] [info] Got 1 index_maps [2025-12-14 10:01:04.317] [RANK: 0] [info] Get global indices [2025-12-14 10:01:04.318] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:01:04.318] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:01:04.319] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2025-12-14 10:01:04.319] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2025-12-14 10:01:04.319] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) [2025-12-14 10:01:04.353] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) [2025-12-14 10:01:04.353] [RANK: 0] [info] Requesting connectivity (3, 0) - (2, 0) [2025-12-14 10:01:04.393] [RANK: 0] [info] Column ghost size increased from 462 to 1288 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 dolfinx hash: debian_1:0.9.0-2 ufl hash: 475c28073ccb3c02130118a9af65e8309bf276c3 petsc version: Petsc Release Version 3.21.6, Sep 28, 2024 Problem type: poisson Scaling type: weak Num processes: 3 Num cells: 162000 (162 thousand) Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- [2025-12-14 10:01:04.483] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Maximum size of coarsest grid 9 Minimum size of coarsest grid 1 Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical SpGEMM type hypre linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=29791, cols=29791 total: nonzeros=424171, allocated nonzeros=424171 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 18.990000 18.990000 Build dofmap data | 2 0.015000 0.030000 Build sparsity | 1 0.020000 0.020000 Compute connectivity 2-0 | 1 0.000000 0.000000 Compute dof reordering map | 2 0.005000 0.010000 Compute entities of dim = 2 | 1 0.190000 0.190000 Compute graph partition (SCOTCH) | 1 18.770000 18.770000 Compute local part of mesh dual graph (mixed) | 2 0.055000 0.110000 Compute local-to-local map | 1 0.010000 0.010000 Compute non-local part of mesh dual graph | 1 0.010000 0.010000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute fixed-degree adjacency list to destination ranks | 1 0.010000 0.010000 Distribute row-wise data (scalable) | 1 0.000000 0.000000 GPS: create_level_structure | 4 0.002500 0.010000 Gibbs-Poole-Stockmeyer ordering | 1 0.010000 0.010000 Init MPI | 1 0.030000 0.030000 Init PETSc | 1 0.000000 0.000000 Init dofmap from element dofmap | 2 0.010000 0.020000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 0.310000 0.310000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 SCOTCH: call SCOTCH_dgraphPart | 1 18.770000 18.770000 SparsityPattern::finalize | 1 0.030000 0.030000 Topology: create | 1 0.070000 0.070000 Topology: determine shared index ownership | 1 0.030000 0.030000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 ZZZ Assemble | 1 0.160000 0.160000 ZZZ Assemble matrix | 1 0.070000 0.070000 ZZZ Assemble vector | 1 0.020000 0.020000 ZZZ Create Mesh | 1 18.990000 18.990000 ZZZ Create RHS function | 1 0.030000 0.030000 ZZZ Create boundary conditions | 1 0.000000 0.000000 ZZZ Create facets and facet->cell connectivity | 1 0.190000 0.190000 ZZZ FunctionSpace | 1 0.020000 0.020000 ZZZ Solve | 1 0.320000 0.320000 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos15-amd64 with 3 processes, by pbuilder1 on Sun Dec 14 10:01:04 2025 Using Petsc Release Version 3.21.6, Sep 28, 2024 Max Max/Min Avg Total Time (sec): 1.968e+01 1.000 1.968e+01 Objects: 0.000e+00 0.000 0.000e+00 Flops: 3.531e+06 1.024 3.489e+06 1.047e+07 Flops/sec: 1.794e+05 1.024 1.773e+05 5.319e+05 MPI Msg Count: 3.000e+01 1.000 3.000e+01 9.000e+01 MPI Msg Len (bytes): 1.850e+05 1.149 5.877e+03 5.289e+05 MPI Reductions: 7.200e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.9677e+01 100.0% 1.0466e+07 100.0% 9.000e+01 100.0% 5.877e+03 100.0% 5.400e+01 75.0% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 5 1.0 3.7433e-02 405.5 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 0 0 27 0 7 0 0 27 0 9 0 BuildTwoSidedF 2 1.0 3.7356e-02 464.1 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatMult 7 1.0 2.9050e-03 1.0 1.93e+06 1.0 4.2e+01 5.6e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 1972 MatConvert 1 1.0 6.7670e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 MatAssemblyBegin 5 1.0 3.8991e-02 18.2 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatAssemblyEnd 5 1.0 5.0128e-03 1.2 3.67e+03 1.1 1.2e+01 1.4e+03 5.0e+00 0 0 13 3 7 0 0 13 3 9 2 MatGetRowIJ 4 1.0 2.6340e-06 2.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 9.3341e-04 3.7 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 MatSetPreallCOO 2 1.0 2.1583e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatSetValuesCOO 2 1.0 1.4582e-03 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecTDot 16 1.0 3.3283e-04 1.2 3.22e+05 1.0 0.0e+00 0.0e+00 1.6e+01 0 9 0 0 22 0 9 0 0 30 2864 VecNorm 8 1.0 1.0960e-03 5.4 1.61e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 435 VecCopy 2 1.0 6.6976e-05 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 9 1.0 9.2862e-05 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 2.7131e-04 2.0 2.81e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 3074 VecAYPX 6 1.0 1.5266e-04 1.4 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 2342 VecScatterBegin 7 1.0 1.6287e-04 1.2 0.00e+00 0.0 4.2e+01 5.6e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 VecScatterEnd 7 1.0 8.1559e-04 5.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 5.4053e-05 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 3 1.0 2.1186e-04 1.3 0.00e+00 0.0 3.6e+01 8.2e+02 3.0e+00 0 0 40 6 4 0 0 40 6 6 0 SFPack 7 1.0 6.5601e-05 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 7 1.0 5.2350e-06 3.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 1 1.0 8.7702e-05 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 1.0331e-01 1.0 2.82e+06 1.0 4.2e+01 5.6e+03 2.4e+01 1 80 47 45 33 1 80 47 45 44 81 PCSetUp 1 1.0 2.1015e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 3 1 0 0 0 4 0 PCApply 8 1.0 9.9211e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 2 2 Matrix 7 7 Index Set 6 6 IS L to G Mapping 1 1 Vector 12 12 Star Forest Graph 3 3 Krylov Solver 1 1 Preconditioner 1 1 Viewer 1 1 ======================================================================================================================== Average time to get PetscTime(): 4.95e-08 Average time for MPI_Barrier(): 1.7014e-06 Average time for zero size MPI_Send(): 3.05167e-06 #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --prefix=/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.21.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.21.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.21.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.21.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-10-20 10:17:39 on reproducible Machine characteristics: Linux-6.1.0-26-amd64-x86_64-with-glibc2.40 Using PETSc directory: /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.21.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.21.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/14 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 10000 source: command line Option left: name:--problem_type value: poisson source: command line Option left: name:--scaling_type value: weak source: command line ==== poisson strong scaling (3 processes with ndofs=30000) ==== [2025-12-14 10:01:05.282] [RANK: 0] [info] Using partitioner with 216000 cell data [2025-12-14 10:01:05.284] [RANK: 0] [info] Compute partition of cells across ranks [2025-12-14 10:01:05.284] [RANK: 0] [info] Building mesh dual graph [2025-12-14 10:01:05.284] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2025-12-14 10:01:05.346] [RANK: 0] [info] Build nonlocal part of mesh dual graph [2025-12-14 10:01:05.346] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:01:05.346] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:01:05.346] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 [2025-12-14 10:01:05.349] [RANK: 0] [info] Graph edges (local: 210000, non-local: 1800) [2025-12-14 10:01:05.349] [RANK: 0] [info] Compute graph partition using PT-SCOTCH [2025-12-14 10:01:19.895] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2025-12-14 10:01:19.896] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2025-12-14 10:01:19.903] [RANK: 0] [info] Extract basic topology: 212868->212868 [2025-12-14 10:01:19.903] [RANK: 0] [info] Build local dual graph [2025-12-14 10:01:19.903] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2025-12-14 10:01:19.963] [RANK: 0] [info] GPS pseudo-diameter:(168) 1479-51277 [2025-12-14 10:01:19.973] [RANK: 0] [info] Create topology (single cell type) [2025-12-14 10:01:19.973] [RANK: 0] [info] Create topology (generalised) [2025-12-14 10:01:19.984] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2025-12-14 10:01:19.984] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2025-12-14 10:01:20.000] [RANK: 0] [info] Compute ghost indices [2025-12-14 10:01:20.000] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 [2025-12-14 10:01:20.001] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 [2025-12-14 10:01:20.006] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2025-12-14 10:01:20.006] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2025-12-14 10:01:20.024] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:01:20.025] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:01:20.025] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:01:20.025] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:01:20.032] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2025-12-14 10:01:20.033] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2025-12-14 10:01:20.033] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 [2025-12-14 10:01:20.033] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:01:20.033] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:01:20.033] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 [2025-12-14 10:01:20.034] [RANK: 0] [info] Checking required entities per dimension [2025-12-14 10:01:20.035] [RANK: 0] [info] Cell type: 0 dofmap: 53217x4 [2025-12-14 10:01:20.043] [RANK: 0] [info] Global index computation [2025-12-14 10:01:20.044] [RANK: 0] [info] Got 1 index_maps [2025-12-14 10:01:20.044] [RANK: 0] [info] Get global indices [2025-12-14 10:01:20.045] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:01:20.045] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (30x30x30) to be refined 0 times [2025-12-14 10:01:20.049] [RANK: 0] [info] Computing mesh entities of dimension 2 [2025-12-14 10:01:20.121] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:01:20.128] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:01:20.226] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:01:20.227] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:01:20.229] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) [2025-12-14 10:01:20.229] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. [2025-12-14 10:01:20.231] [RANK: 0] [info] Checking required entities per dimension [2025-12-14 10:01:20.231] [RANK: 0] [info] Cell type: 0 dofmap: 53217x4 [2025-12-14 10:01:20.235] [RANK: 0] [info] Global index computation [2025-12-14 10:01:20.235] [RANK: 0] [info] Got 1 index_maps [2025-12-14 10:01:20.236] [RANK: 0] [info] Get global indices [2025-12-14 10:01:20.236] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-12-14 10:01:20.236] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-12-14 10:01:20.236] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2025-12-14 10:01:20.237] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2025-12-14 10:01:20.237] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) [2025-12-14 10:01:20.256] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) [2025-12-14 10:01:20.256] [RANK: 0] [info] Requesting connectivity (3, 0) - (2, 0) [2025-12-14 10:01:20.278] [RANK: 0] [info] Column ghost size increased from 471 to 1281 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 dolfinx hash: debian_1:0.9.0-2 ufl hash: 475c28073ccb3c02130118a9af65e8309bf276c3 petsc version: Petsc Release Version 3.21.6, Sep 28, 2024 Problem type: poisson Scaling type: strong Num processes: 3 Num cells: 162000 (162 thousand) Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- [2025-12-14 10:01:20.327] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Maximum size of coarsest grid 9 Minimum size of coarsest grid 1 Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical SpGEMM type hypre linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=29791, cols=29791 total: nonzeros=424171, allocated nonzeros=424171 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 14.760000 14.760000 Build dofmap data | 2 0.005000 0.010000 Build sparsity | 1 0.010000 0.010000 Compute connectivity 2-0 | 1 0.010000 0.010000 Compute dof reordering map | 2 0.000000 0.000000 Compute entities of dim = 2 | 1 0.180000 0.180000 Compute graph partition (SCOTCH) | 1 14.550000 14.550000 Compute local part of mesh dual graph (mixed) | 2 0.060000 0.120000 Compute local-to-local map | 1 0.000000 0.000000 Compute non-local part of mesh dual graph | 1 0.020000 0.020000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute fixed-degree adjacency list to destination ranks | 1 0.020000 0.020000 Distribute row-wise data (scalable) | 1 0.000000 0.000000 GPS: create_level_structure | 2 0.000000 0.000000 Gibbs-Poole-Stockmeyer ordering | 1 0.010000 0.010000 Init MPI | 1 0.030000 0.030000 Init PETSc | 1 0.010000 0.010000 Init dofmap from element dofmap | 2 0.005000 0.010000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 0.220000 0.220000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 SCOTCH: call SCOTCH_dgraphPart | 1 14.550000 14.550000 SparsityPattern::finalize | 1 0.020000 0.020000 Topology: create | 1 0.050000 0.050000 Topology: determine shared index ownership | 1 0.010000 0.010000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 ZZZ Assemble | 1 0.090000 0.090000 ZZZ Assemble matrix | 1 0.040000 0.040000 ZZZ Assemble vector | 1 0.000000 0.000000 ZZZ Create Mesh | 1 14.760000 14.760000 ZZZ Create RHS function | 1 0.020000 0.020000 ZZZ Create boundary conditions | 1 0.000000 0.000000 ZZZ Create facets and facet->cell connectivity | 1 0.190000 0.190000 ZZZ FunctionSpace | 1 0.010000 0.010000 ZZZ Solve | 1 0.220000 0.220000 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos15-amd64 with 3 processes, by pbuilder1 on Sun Dec 14 10:01:20 2025 Using Petsc Release Version 3.21.6, Sep 28, 2024 Max Max/Min Avg Total Time (sec): 1.526e+01 1.000 1.526e+01 Objects: 0.000e+00 0.000 0.000e+00 Flops: 3.510e+06 1.018 3.489e+06 1.047e+07 Flops/sec: 2.299e+05 1.018 2.286e+05 6.857e+05 MPI Msg Count: 3.000e+01 1.000 3.000e+01 9.000e+01 MPI Msg Len (bytes): 1.894e+05 1.189 5.890e+03 5.301e+05 MPI Reductions: 7.200e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.5264e+01 100.0% 1.0466e+07 100.0% 9.000e+01 100.0% 5.890e+03 100.0% 5.400e+01 75.0% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 5 1.0 2.8867e-03 55.0 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 0 0 27 0 7 0 0 27 0 9 0 BuildTwoSidedF 2 1.0 2.8884e-03 57.5 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatMult 7 1.0 2.1963e-03 1.0 1.92e+06 1.0 4.2e+01 5.6e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 2609 MatConvert 1 1.0 4.3581e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 MatAssemblyBegin 5 1.0 4.4651e-03 2.5 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatAssemblyEnd 5 1.0 3.6317e-03 1.2 3.86e+03 1.2 1.2e+01 1.4e+03 5.0e+00 0 0 13 3 7 0 0 13 3 9 3 MatGetRowIJ 4 1.0 1.1310e-06 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 4.3268e-04 3.3 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 MatSetPreallCOO 2 1.0 1.5972e-03 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatSetValuesCOO 2 1.0 7.2013e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecTDot 16 1.0 2.9467e-04 1.3 3.20e+05 1.0 0.0e+00 0.0e+00 1.6e+01 0 9 0 0 22 0 9 0 0 30 3235 VecNorm 8 1.0 2.9762e-04 2.1 1.60e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 1601 VecCopy 2 1.0 4.2255e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 9 1.0 5.3557e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 1.4165e-04 1.4 2.80e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 5889 VecAYPX 6 1.0 9.5778e-05 1.9 1.20e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 3733 VecScatterBegin 7 1.0 1.3060e-04 1.2 0.00e+00 0.0 4.2e+01 5.6e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 VecScatterEnd 7 1.0 6.3846e-04 5.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 3.2075e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 3 1.0 1.2304e-04 1.0 0.00e+00 0.0 3.6e+01 8.2e+02 3.0e+00 0 0 40 6 4 0 0 40 6 6 0 SFPack 7 1.0 4.1940e-05 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 7 1.0 1.6080e-06 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 1 1.0 6.8766e-05 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 6.6981e-02 1.0 2.80e+06 1.0 4.2e+01 5.6e+03 2.4e+01 0 80 47 45 33 0 80 47 45 44 125 PCSetUp 1 1.0 1.4688e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 3 1 0 0 0 4 0 PCApply 8 1.0 6.3952e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 2 2 Matrix 7 7 Index Set 6 6 IS L to G Mapping 1 1 Vector 12 12 Star Forest Graph 3 3 Krylov Solver 1 1 Preconditioner 1 1 Viewer 1 1 ======================================================================================================================== Average time to get PetscTime(): 4.42e-08 Average time for MPI_Barrier(): 1.765e-06 Average time for zero size MPI_Send(): 3.091e-06 #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --prefix=/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.21.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.21.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.21.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.21.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-10-20 10:17:39 on reproducible Machine characteristics: Linux-6.1.0-26-amd64-x86_64-with-glibc2.40 Using PETSc directory: /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.21.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.21.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/14 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 30000 source: command line Option left: name:--problem_type value: poisson source: command line Option left: name:--scaling_type value: strong source: command line make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake -O--sourcedirectory=src dh_prep -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_install -O--buildsystem=cmake -O--sourcedirectory=src cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/fenicsx-performance-tests-0.9.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -B/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/fenicsx-performance-tests-0.9.0/debian/tmp/usr/bin/dolfinx-scaling-test make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake -O--sourcedirectory=src dh_installdocs -O--buildsystem=cmake -O--sourcedirectory=src dh_installchangelogs -O--buildsystem=cmake -O--sourcedirectory=src dh_installman -O--buildsystem=cmake -O--sourcedirectory=src dh_installsystemduser -O--buildsystem=cmake -O--sourcedirectory=src dh_perl -O--buildsystem=cmake -O--sourcedirectory=src dh_link -O--buildsystem=cmake -O--sourcedirectory=src dh_strip_nondeterminism -O--buildsystem=cmake -O--sourcedirectory=src dh_compress -O--buildsystem=cmake -O--sourcedirectory=src dh_fixperms -O--buildsystem=cmake -O--sourcedirectory=src dh_missing -O--buildsystem=cmake -O--sourcedirectory=src dh_dwz -a -O--buildsystem=cmake -O--sourcedirectory=src dh_strip -a -O--buildsystem=cmake -O--sourcedirectory=src dh_makeshlibs -a -O--buildsystem=cmake -O--sourcedirectory=src dh_shlibdeps -a -O--buildsystem=cmake -O--sourcedirectory=src dh_installdeb -O--buildsystem=cmake -O--sourcedirectory=src dh_gencontrol -O--buildsystem=cmake -O--sourcedirectory=src dh_md5sums -O--buildsystem=cmake -O--sourcedirectory=src dh_builddeb -O--buildsystem=cmake -O--sourcedirectory=src dpkg-deb: building package 'fenicsx-performance-tests' in '../fenicsx-performance-tests_0.9.0-2_amd64.deb'. dpkg-deb: building package 'fenicsx-performance-tests-dbgsym' in '../fenicsx-performance-tests-dbgsym_0.9.0-2_amd64.deb'. dpkg-deb: building package 'fenicsx-performance-tests-source' in '../fenicsx-performance-tests-source_0.9.0-2_all.deb'. dpkg-genbuildinfo --build=binary -O../fenicsx-performance-tests_0.9.0-2_amd64.buildinfo dpkg-genchanges --build=binary -O../fenicsx-performance-tests_0.9.0-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1430839 and its subdirectories I: Current time: Sun Dec 14 10:01:35 -12 2025 I: pbuilder-time-stamp: 1765749695 Mon Nov 11 15:38:36 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Mon Nov 11 15:38:36 UTC 2024 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Mon Nov 11 15:43:52 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Mon Nov 11 15:43:53 UTC 2024 I: fenicsx-performance-tests_0.9.0-2_amd64.changes: Format: 1.8 Date: Wed, 06 Nov 2024 07:19:30 +0000 Source: fenicsx-performance-tests Binary: fenicsx-performance-tests fenicsx-performance-tests-dbgsym fenicsx-performance-tests-source Architecture: amd64 all Version: 0.9.0-2 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Francesco Ballarin Description: fenicsx-performance-tests - Performance test codes for FEniCS/DOLFIN-X (binaries) fenicsx-performance-tests-source - Performance test codes for FEniCS/DOLFIN-X (source) Changes: fenicsx-performance-tests (0.9.0-2) unstable; urgency=medium . * Upload to unstable Checksums-Sha1: 5a1955cbd168b6b8b40ece62bea06283e3f9b8a3 6293336 fenicsx-performance-tests-dbgsym_0.9.0-2_amd64.deb 70201d75de6ec71f21330520c0dc9c5ada93cacf 18124 fenicsx-performance-tests-source_0.9.0-2_all.deb 56490a76052b2bec8790a373060e583b6a529636 16656 fenicsx-performance-tests_0.9.0-2_amd64.buildinfo 27815fd44429ecb5fb625694e39b0dbbb9516209 285792 fenicsx-performance-tests_0.9.0-2_amd64.deb Checksums-Sha256: 9942607fe4cafdcb3b3082d90085842d7042005059b2d669c0523ab2e7d84fa1 6293336 fenicsx-performance-tests-dbgsym_0.9.0-2_amd64.deb 780ddf0553809800fd57a1e069f987776c98ac93c1cf4396468f54e687751451 18124 fenicsx-performance-tests-source_0.9.0-2_all.deb ce4a0d29facd81d1ad743d448312ec14fe20eb7a0fa5c11b4145fbff8ee6a842 16656 fenicsx-performance-tests_0.9.0-2_amd64.buildinfo 318be7495fd500c8947ad628757197c41e83bd7a65fde9b19a8bac3c658bd222 285792 fenicsx-performance-tests_0.9.0-2_amd64.deb Files: fbbd1592b531b25750a8ea1eb1207d8a 6293336 debug optional fenicsx-performance-tests-dbgsym_0.9.0-2_amd64.deb eccf4d16cdeb02a8ba0606a6b5636d72 18124 libdevel optional fenicsx-performance-tests-source_0.9.0-2_all.deb 249bcd4f35b4c1c073933a87ded13f45 16656 libdevel optional fenicsx-performance-tests_0.9.0-2_amd64.buildinfo 3241b0a9f70d810412c380143f2951f9 285792 libdevel optional fenicsx-performance-tests_0.9.0-2_amd64.deb Mon Nov 11 15:43:54 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_28-38196.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ieeGwmYy/fenicsx-performance-tests_0.9.0-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ieeGwmYy/fenicsx-performance-tests_0.9.0-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ieeGwmYy/fenicsx-performance-tests_0.9.0-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ieeGwmYy/b1/fenicsx-performance-tests_0.9.0-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ieeGwmYy/b2/fenicsx-performance-tests_0.9.0-2_amd64.changes ## close_archive (total time: 0.000s) 0.000s 20 calls diffoscope.comparators.xz.XzContainer 0.000s 10 calls diffoscope.comparators.deb.DebContainer 0.000s 14 calls diffoscope.comparators.tar.TarContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 368.837s) 194.804s 1082 calls readelf 147.179s 127 calls diff 25.053s 220 calls objdump 0.954s 2 calls objcopy 0.557s 20 calls xz 0.289s 22 calls strings 0.001s 18 calls cmp (internal) ## compare_files (cumulative) (total time: 999.051s) 192.029s 1 call abc.DotChangesFile 191.993s 2 calls abc.DebFile 191.891s 4 calls abc.XzFile 191.483s 2 calls abc.DebDataTarFile 190.720s 2 calls abc.ElfFile 38.349s 10 calls diffoscope.comparators.elf.ElfCodeSection 1.247s 3 calls diffoscope.comparators.elf.ElfStringSection 1.206s 37 calls diffoscope.comparators.elf.ElfSection 0.086s 2 calls abc.TarFile 0.026s 1 call abc.TextFile 0.011s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection 0.010s 2 calls abc.Md5sumsFile ## container_extract (total time: 0.715s) 0.558s 20 calls diffoscope.comparators.xz.XzContainer 0.074s 16 calls diffoscope.comparators.deb.DebTarContainer 0.073s 24 calls diffoscope.comparators.deb.DebContainer 0.011s 18 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.313s) 0.313s 254 calls linediff ## has_same_content_as (total time: 0.004s) 0.001s 4 calls abc.TextFile 0.001s 4 calls abc.Md5sumsFile 0.000s 2 calls abc.DebDataTarFile 0.000s 3 calls abc.DebFile 0.000s 4 calls abc.XzFile 0.000s 2 calls abc.ElfFile 0.000s 37 calls diffoscope.comparators.elf.ElfSection 0.000s 2 calls abc.TarFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 10 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 3 calls diffoscope.comparators.elf.ElfStringSection 0.000s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 193.874s) 193.874s 2 calls outputs 0.001s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 20 calls diffoscope.comparators.xz.XzContainer 0.000s 14 calls diffoscope.comparators.tar.TarContainer 0.000s 10 calls diffoscope.comparators.deb.DebContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 1.399s) 1.393s 1 call html 0.004s 1 call text 0.003s 1 call json ## recognizes (total time: 0.673s) 0.307s 900 calls diffoscope.comparators.utils.archive.ArchiveMember 0.229s 1808 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.085s 12 calls diffoscope.comparators.binary.FilesystemFile 0.052s 324 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.141s) 0.141s 74 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 3min 14.247s CPU time consumed: 4min 15.856s Mon Nov 11 15:47:13 UTC 2024 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Mon Nov 11 15:47:13 UTC 2024 E: fenicsx-performance-tests failed to build reproducibly in unstable on amd64. Mon Nov 11 15:47:14 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Nov 11 15:47:14 UTC 2024 I: Submitting 20K b1/fenicsx-performance-tests_0.9.0-2_amd64.buildinfo.asc Mon Nov 11 15:47:15 UTC 2024 I: Submitting 20K b2/fenicsx-performance-tests_0.9.0-2_amd64.buildinfo.asc Mon Nov 11 15:47:16 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Nov 11 15:47:16 UTC 2024 I: Done submitting .buildinfo files. Mon Nov 11 15:47:16 UTC 2024 I: Removing signed fenicsx-performance-tests_0.9.0-2_amd64.buildinfo.asc files: removed './b1/fenicsx-performance-tests_0.9.0-2_amd64.buildinfo.asc' removed './b2/fenicsx-performance-tests_0.9.0-2_amd64.buildinfo.asc'