Tue Dec 3 15:38:17 UTC 2024 I: starting to build fenics-dolfinx/unstable/amd64 on jenkins on '2024-12-03 15:38' Tue Dec 3 15:38:17 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_19/38439/console.log Tue Dec 3 15:38:17 UTC 2024 I: Downloading source for unstable/fenics-dolfinx=1:0.9.0-5 --2024-12-03 15:38:17-- http://deb.debian.org/debian/pool/main/f/fenics-dolfinx/fenics-dolfinx_0.9.0-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 4217 (4.1K) [text/prs.lines.tag] Saving to: ‘fenics-dolfinx_0.9.0-5.dsc’ 0K .... 100% 370M=0s 2024-12-03 15:38:17 (370 MB/s) - ‘fenics-dolfinx_0.9.0-5.dsc’ saved [4217/4217] Tue Dec 3 15:38:17 UTC 2024 I: fenics-dolfinx_0.9.0-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: fenics-dolfinx Binary: libdolfinx-dev, libdolfinx-real-dev, libdolfinx-complex-dev, libdolfinx-real0.9, libdolfinx-complex0.9, python3-dolfinx, python3-dolfinx-real, python3-dolfinx-complex, dolfinx-doc Architecture: any all Version: 1:0.9.0-5 Maintainer: Debian Science Maintainers Uploaders: Drew Parsons , Francesco Ballarin Homepage: https://fenicsproject.org Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/science-team/fenics/fenics-dolfinx Vcs-Git: https://salsa.debian.org/science-team/fenics/fenics-dolfinx.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, python3-all, python3-all-dev, python3-decorator, python3-gmsh, python3-matplotlib, python3-pip, python3-pytest, python3-requests, python3-scipy, python3-virtualenv Build-Depends: cmake, debhelper-compat (= 13), dh-python, gfortran, catch2 (>= 3~), chrpath, libbasix-dev (>= 0.9.0~), python3-basix, libboost-chrono-dev, libboost-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-math-dev, libboost-mpi-dev, libboost-program-options-dev, libboost-serialization-dev, libboost-thread-dev, libboost-timer-dev, libeigen3-dev, libhdf5-mpi-dev, libadios2-mpi-c++11-dev [amd64 arm64 mips64el ppc64el riscv64 s390x loong64 ppc64 sparc64], libpugixml-dev, libsuitesparse-dev, libscotch-dev, libxml2-dev, mpi-default-dev, libpetsc-real-dev, libpetsc-complex-dev, libslepc-real-dev, libslepc-complex-dev, python3-setuptools, pybuild-plugin-pyproject, python3-petsc4py, python3-petsc4py-real, python3-petsc4py-complex, python3-slepc4py, python3-slepc4py-real, python3-slepc4py-complex, pkgconf, python3-all-dev, python3-cffi, python3-ffcx (>= 1:0.9.0~), python3-ffcx (<< 1:0.10.0), python3-ufl (>= 2024.2.0~), python3-mpi4py, python3-nanobind (>= 2.0.0~), python3-numpy (>= 1:1.21~), python3-pip, python3-ply, python3-pytest , python3-pusimp (>= 0.1.1~), python3-requests , python3-scikit-build-core, python3-scipy , python3-sphinx, python3-virtualenv, libspdlog-dev Build-Depends-Indep: doxygen, graphviz, libjs-mathjax, libjs-modernizr, python3-jupytext, python3-matplotlib, python3-myst-parser, python3-sphinx-rtd-theme Package-List: dolfinx-doc deb doc optional arch=all libdolfinx-complex-dev deb libdevel optional arch=any libdolfinx-complex0.9 deb libs optional arch=any libdolfinx-dev deb libdevel optional arch=any libdolfinx-real-dev deb libdevel optional arch=any libdolfinx-real0.9 deb libs optional arch=any python3-dolfinx deb python optional arch=any python3-dolfinx-complex deb python optional arch=any python3-dolfinx-real deb python optional arch=any Checksums-Sha1: b00d36e013d78564a549482530cde0501352eb22 778388 fenics-dolfinx_0.9.0.orig.tar.gz ff25dfe33cfb8ea6baeba6230d16e8fb881e2188 45324 fenics-dolfinx_0.9.0-5.debian.tar.xz Checksums-Sha256: 8caf7bc7beabe66d8f0e130fa3ef2e65b074952aef88d13314a548894e8f0b03 778388 fenics-dolfinx_0.9.0.orig.tar.gz bd4f9cca2f4fcd315e634d9ebd64bc6a567621c97fb9704268f1686978b47c4f 45324 fenics-dolfinx_0.9.0-5.debian.tar.xz Files: 52117cfda6fc7237fb42c7687158de52 778388 fenics-dolfinx_0.9.0.orig.tar.gz e1034ccdde09723eff33214dbdc8b96a 45324 fenics-dolfinx_0.9.0-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEI8mpPlhYGekSbQo2Vz7x5L1aAfoFAmdN2JkUHGRwYXJzb25z QGRlYmlhbi5vcmcACgkQVz7x5L1aAfr7pxAAuDY+sKVZCLgd6haAa9Z1Fymfy+uG O/IUPdRAKJyQhJo5y5NMF/6KpUYeQ/H15fdjdwlb9YCmFAq7HeIdDEh/8nyC7QKd XvJG4YEu7zKB83Fx39MOeUAC6tZ8TWfKoHZND+YRwJxUm4iy2VKST5SLPkewiN9Q Evr4FZE8Qb9VosJt61xkW8lhEUyOOw32WuG+ZvnJlyYR8sF7Dj2W2II3lVCXudJC VWgEZQUiaJxGOtYyrE5lZ0fIHE3dBXe6DknuW4I2HQbLGj45lVMUSJSiQlGH5o2Y rWLo0WkX9IwPcGhUmg0jgbDZwVOXaaak00hIjUyRoGz83FL9omHcrV3yV/6hf9m4 7/U8IjhvDQThPYTt+o+TverHqcro5xDz3Ko1qSv/QSPqd0W/oePGa2BgGoe9rceH lI+81jtxxbvMRNgh7Bu0WrjpSVV6hVqYE/wh0Ja0I4dhNKULiiHWYoldJaBnCaR4 BbX8FYgqp5SpLKXOt3lY+rwUVHKzO1eZ3efzG2M+kJP55TzLw28LViVemFTo/MFj dGMHQRRwc1GzjM9fTfcu/cLqzcZqrszsMr0QOvXyWi14UDIJbsUY/Ta1pt+yLnvr 8WPXwl9KZKKcGWw6EPJx0TTYBJ5NweVqMczSt7mhQTWgMhpIQHksGNLpJeDO9LF9 VRHwJ3HHDMDA4qk= =IP2R -----END PGP SIGNATURE----- Tue Dec 3 15:38:17 UTC 2024 I: Checking whether the package is not for us Tue Dec 3 15:38:17 UTC 2024 I: Starting 1st build on remote node ionos1-amd64.debian.net. Tue Dec 3 15:38:17 UTC 2024 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Wed Dec 4 02:27:19 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 3 03:38:19 -12 2024 I: pbuilder-time-stamp: 1733240299 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fenics-dolfinx_0.9.0-5.dsc] I: copying [./fenics-dolfinx_0.9.0.orig.tar.gz] I: copying [./fenics-dolfinx_0.9.0-5.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Dec 2 15:56:09 2024 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: issuer "dparsons@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fenics-dolfinx_0.9.0-5.dsc: no acceptable signature found dpkg-source: info: extracting fenics-dolfinx in fenics-dolfinx-0.9.0 dpkg-source: info: unpacking fenics-dolfinx_0.9.0.orig.tar.gz dpkg-source: info: unpacking fenics-dolfinx_0.9.0-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying extra_CXXFLAGS.patch dpkg-source: info: applying python_cmake_module_path.patch dpkg-source: info: applying lib_rename.patch dpkg-source: info: applying python_unit_test_32bit.patch dpkg-source: info: applying docs_local_mathjax.patch dpkg-source: info: applying debian_version_id.patch dpkg-source: info: applying demo_no_vtk_adios2.patch dpkg-source: info: applying adios_config_mpi.patch dpkg-source: info: applying big_endian_skip_adios2_tests.patch dpkg-source: info: applying python_local_license.patch dpkg-source: info: applying pusimp.patch dpkg-source: info: applying drop_Werror.patch dpkg-source: info: applying demo_stokes_mumps_instead_of_superlu_dist.patch dpkg-source: info: applying test_adios2_skip.patch dpkg-source: info: applying unpin_cffi.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2837077/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='8626b8bcc20243e793afaa01d41c59dd' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2837077' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XJiscdJa/pbuilderrc_5BeA --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XJiscdJa/b1 --logfile b1/build.log fenics-dolfinx_0.9.0-5.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2837077/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake, debhelper-compat (= 13), dh-python, gfortran, catch2 (>= 3~), chrpath, libbasix-dev (>= 0.9.0~), python3-basix, libboost-chrono-dev, libboost-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-math-dev, libboost-mpi-dev, libboost-program-options-dev, libboost-serialization-dev, libboost-thread-dev, libboost-timer-dev, libeigen3-dev, libhdf5-mpi-dev, libadios2-mpi-c++11-dev, libpugixml-dev, libsuitesparse-dev, libscotch-dev, libxml2-dev, mpi-default-dev, libpetsc-real-dev, libpetsc-complex-dev, libslepc-real-dev, libslepc-complex-dev, python3-setuptools, pybuild-plugin-pyproject, python3-petsc4py, python3-petsc4py-real, python3-petsc4py-complex, python3-slepc4py, python3-slepc4py-real, python3-slepc4py-complex, pkgconf, python3-all-dev, python3-cffi, python3-ffcx (>= 1:0.9.0~), python3-ffcx (<< 1:0.10.0), python3-ufl (>= 2024.2.0~), python3-mpi4py, python3-nanobind (>= 2.0.0~), python3-numpy (>= 1:1.21~), python3-pip, python3-ply, python3-pytest, python3-pusimp (>= 0.1.1~), python3-requests, python3-scikit-build-core, python3-scipy, python3-sphinx, python3-virtualenv, libspdlog-dev, doxygen, graphviz, libjs-mathjax, libjs-modernizr, python3-jupytext, python3-matplotlib, python3-myst-parser, python3-sphinx-rtd-theme dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19968 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on catch2 (>= 3~); however: Package catch2 is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. pbuilder-satisfydepends-dummy depends on libbasix-dev (>= 0.9.0~); however: Package libbasix-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-basix; however: Package python3-basix is not installed. pbuilder-satisfydepends-dummy depends on libboost-chrono-dev; however: Package libboost-chrono-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-math-dev; however: Package libboost-math-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-mpi-dev; however: Package libboost-mpi-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-serialization-dev; however: Package libboost-serialization-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however: Package libboost-thread-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-timer-dev; however: Package libboost-timer-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-mpi-dev; however: Package libhdf5-mpi-dev is not installed. pbuilder-satisfydepends-dummy depends on libadios2-mpi-c++11-dev; however: Package libadios2-mpi-c++11-dev is not installed. pbuilder-satisfydepends-dummy depends on libpugixml-dev; however: Package libpugixml-dev is not installed. pbuilder-satisfydepends-dummy depends on libsuitesparse-dev; however: Package libsuitesparse-dev is not installed. pbuilder-satisfydepends-dummy depends on libscotch-dev; however: Package libscotch-dev is not installed. pbuilder-satisfydepends-dummy depends on libxml2-dev; however: Package libxml2-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on libpetsc-real-dev; however: Package libpetsc-real-dev is not installed. pbuilder-satisfydepends-dummy depends on libpetsc-complex-dev; however: Package libpetsc-complex-dev is not installed. pbuilder-satisfydepends-dummy depends on libslepc-real-dev; however: Package libslepc-real-dev is not installed. pbuilder-satisfydepends-dummy depends on libslepc-complex-dev; however: Package libslepc-complex-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-petsc4py; however: Package python3-petsc4py is not installed. pbuilder-satisfydepends-dummy depends on python3-petsc4py-real; however: Package python3-petsc4py-real is not installed. pbuilder-satisfydepends-dummy depends on python3-petsc4py-complex; however: Package python3-petsc4py-complex is not installed. pbuilder-satisfydepends-dummy depends on python3-slepc4py; however: Package python3-slepc4py is not installed. pbuilder-satisfydepends-dummy depends on python3-slepc4py-real; however: Package python3-slepc4py-real is not installed. pbuilder-satisfydepends-dummy depends on python3-slepc4py-complex; however: Package python3-slepc4py-complex is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-cffi; however: Package python3-cffi is not installed. pbuilder-satisfydepends-dummy depends on python3-ffcx (>= 1:0.9.0~); however: Package python3-ffcx is not installed. pbuilder-satisfydepends-dummy depends on python3-ffcx (<< 1:0.10.0); however: Package python3-ffcx is not installed. pbuilder-satisfydepends-dummy depends on python3-ufl (>= 2024.2.0~); however: Package python3-ufl is not installed. pbuilder-satisfydepends-dummy depends on python3-mpi4py; however: Package python3-mpi4py is not installed. pbuilder-satisfydepends-dummy depends on python3-nanobind (>= 2.0.0~); however: Package python3-nanobind is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy (>= 1:1.21~); however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pip; however: Package python3-pip is not installed. pbuilder-satisfydepends-dummy depends on python3-ply; however: Package python3-ply is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pusimp (>= 0.1.1~); however: Package python3-pusimp is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-scikit-build-core; however: Package python3-scikit-build-core is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-virtualenv; however: Package python3-virtualenv is not installed. pbuilder-satisfydepends-dummy depends on libspdlog-dev; however: Package libspdlog-dev is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on graphviz; however: Package graphviz is not installed. pbuilder-satisfydepends-dummy depends on libjs-mathjax; however: Package libjs-mathjax is not installed. pbuilder-satisfydepends-dummy depends on libjs-modernizr; however: Package libjs-modernizr is not installed. pbuilder-satisfydepends-dummy depends on python3-jupytext; however: Package python3-jupytext is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-myst-parser; however: Package python3-myst-parser is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} catch2{a} chrpath{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} doxygen{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-lato{a} fonts-lyx{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} graphviz{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libabsl20230802{a} libadios2-common-c++11-dev{a} libadios2-common-core-dev{a} libadios2-mpi-auxiliary-2.10{a} 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libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization-dev{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost-timer-dev{a} libboost-timer1.83-dev{a} libboost-timer1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbtf2{a} libc6-dbg{a} libcairo2{a} libcamd3{a} libcatch2-dev{a} libcbor0.10{a} libccolamd3{a} libcdt5{a} libcgraph6{a} libcholmod5{a} libclang-cpp19{a} libclang1-19{a} libcolamd3{a} libcom-err2{a} libcombblas2.0.0t64{a} libcurl4-openssl-dev{a} libcurl4t64{a} libcxsparse4{a} libdatrie1{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm2{a} libedit2{a} libeigen3-dev{a} libelf1t64{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-quad3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libfmt-dev{a} libfmt10{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libgts-0.7-5t64{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libhdf5-mpi-dev{a} libhdf5-openmpi-103-1t64{a} libhdf5-openmpi-cpp-103-1t64{a} libhdf5-openmpi-dev{a} libhdf5-openmpi-fortran-102t64{a} libhdf5-openmpi-hl-100t64{a} libhdf5-openmpi-hl-cpp-100t64{a} libhdf5-openmpi-hl-fortran-100t64{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libhypre-2.32.0{a} libhypre-dev{a} libibmad5{a} libibumad3{a} libibverbs-dev{a} libibverbs1{a} libice6{a} libicu-dev{a} libicu72{a} libidn2-dev{a} libimagequant0{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-modernizr{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libklu2{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblab-gamut1{a} liblapack-dev{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} libldap-dev{a} libldl3{a} liblerc4{a} libllvm17t64{a} libllvm19{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libmetis5{a} libmumps-5.7{a} libmumps-dev{a} libmumps-headers-dev{a} libmunge2{a} libnghttp2-14{a} libnghttp2-dev{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnorm1t64{a} libnsl2{a} libnuma-dev{a} libnuma1{a} libopenjp2-7{a} libopenmpi-dev{a} libopenmpi40{a} libp11-kit-dev{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libparpack2-dev{a} libparpack2t64{a} libparu1{a} libpathplan4{a} libpciaccess0{a} libpetsc-complex-dev{a} libpetsc-complex3.22{a} libpetsc-complex3.22-dev{a} libpetsc-real-dev{a} libpetsc-real3.22{a} libpetsc-real3.22-dev{a} libpetsc3.22-dev-common{a} libpgm-5.3-0t64{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpmix-dev{a} libpmix2t64{a} libpng16-16t64{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpsm-infinipath1{a} libpsm2-2{a} libptscotch-7.0{a} libptscotch-dev{a} libpugixml-dev{a} libpugixml1v5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} librav1e0.7{a} librbio4{a} librdmacm1t64{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.2{a} libscotch-7.0{a} libscotch-dev{a} libsharpyuv0{a} libslepc-complex-dev{a} libslepc-complex3.22{a} libslepc-complex3.22-dev{a} libslepc-real-dev{a} libslepc-real3.22{a} libslepc-real3.22-dev{a} libsm6{a} libsodium23{a} libspdlog-dev{a} libspdlog1.12{a} libspex3{a} libspqr4{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsuitesparse-dev{a} libsuitesparse-mongoose3{a} libsuitesparseconfig7{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist8{a} libsuperlu7{a} libsvtav1enc2{a} libsz2{a} libtasn1-6-dev{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libucx0{a} libumfpack6{a} libunbound8{a} libuv1t64{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxml2-dev{a} libxmu6{a} libxnvctrl0{a} libxpm4{a} libxrender1{a} libxslt1.1{a} libxss1{a} libxt6t64{a} libyaml-0-2{a} libyaml-cpp0.8{a} libyaml-dev{a} libyuv0{a} libz3-4{a} libzmq5{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} nanobind-dev{a} netbase{a} nettle-dev{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} pybuild-plugin-pyproject{a} python-babel-localedata{a} python-matplotlib-data{a} python-petsc4py-doc{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-autocommand{a} python3-babel{a} python3-basix{a} python3-brotli{a} python3-build{a} python3-certifi{a} python3-cffi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-dev{a} python3-distlib{a} python3-docutils{a} python3-fastjsonschema{a} python3-ffcx{a} python3-filelock{a} python3-fonttools{a} python3-fs{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-jupyter-core{a} python3-jupytext{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-markdown-it{a} python3-markupsafe{a} python3-matplotlib{a} python3-mdit-py-plugins{a} python3-mdurl{a} python3-minimal{a} python3-more-itertools{a} python3-mpi4py{a} python3-mpmath{a} python3-myst-parser{a} python3-nanobind{a} python3-nbformat{a} python3-numpy{a} python3-packaging{a} python3-pathspec{a} python3-petsc4py{a} python3-petsc4py-complex{a} python3-petsc4py-complex3.22{a} python3-petsc4py-real{a} python3-petsc4py-real3.22{a} python3-pil{a} python3-pil.imagetk{a} python3-pip{a} python3-pip-whl{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-ply{a} python3-pusimp{a} python3-pycparser{a} python3-pygments{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pyproject-metadata{a} python3-pytest{a} python3-referencing{a} python3-requests{a} python3-roman{a} python3-rpds-py{a} python3-scikit-build-core{a} python3-scipy{a} python3-setuptools{a} python3-setuptools-whl{a} python3-slepc4py{a} python3-slepc4py-complex{a} python3-slepc4py-complex3.22{a} python3-slepc4py-real{a} python3-slepc4py-real3.22{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sphinx-rtd-theme{a} python3-sphinxcontrib.jquery{a} python3-sympy{a} python3-tk{a} python3-toml{a} python3-traitlets{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufl{a} python3-ufolib2{a} python3-urllib3{a} python3-virtualenv{a} python3-wheel{a} python3-wheel-whl{a} python3-yaml{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.12-tk{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} robin-map-dev{a} sensible-utils{a} sgml-base{a} sphinx-common{a} sphinx-rtd-theme-common{a} swig{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} valgrind{a} valgrind-mpi{a} x11-common{a} x11proto-dev{a} xml-core{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-liberation gdb isympy-common javascript-common krb5-locales ksh ksh93u+m libarchive-cpio-perl libcoarrays-openmpi-dev libgl-dev libglib2.0-data libgraphblas-dev libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libjson-xs-perl libldap-common libmail-sendmail-perl libpaper-utils libpetsc3.22-dev-examples libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx mksh psmisc publicsuffix python3-bs4 python3-cssselect python3-html5lib python3-json-pointer python3-olefile python3-pooch python3-rfc3987 python3-uritemplate python3-webcolors shared-mime-info wget xauth xdg-user-dirs zsh 0 packages upgraded, 549 newly installed, 0 to remove and 0 not upgraded. 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amd64 1.21.3-3 [79.9 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 13 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.7-1 [9712 B] Get: 23 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.7-1 [27.8 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.0-2 [856 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.0-2 [2038 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31 [15.4 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc 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http://deb.debian.org/debian unstable/main amd64 libfido2-1 amd64 1.15.0-1+b1 [78.7 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 openssh-client amd64 1:9.9p1-3 [991 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1042 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b2 [54.5 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b2 [17.0 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.15-1 [791 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get: 71 http://deb.debian.org/debian unstable/main amd64 libcatch2-dev amd64 3.7.1-0.4 [613 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 catch2 all 3.7.1-0.4 [5052 B] Get: 73 http://deb.debian.org/debian unstable/main amd64 chrpath amd64 0.18-1 [13.5 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.1-1 [2267 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.11.0-1 [351 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.1-1 [11.9 MB] Get: 90 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.2~rc1-1 [55.3 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 97 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 109 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.2.0-1 [731 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20241024 [109 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libllvm19 amd64 1:19.1.4-1 [26.0 MB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libclang-cpp19 amd64 1:19.1.4-1 [13.2 MB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libclang1-19 amd64 1:19.1.4-1 [7622 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libfmt10 amd64 10.1.1+ds1-4 [127 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 doxygen amd64 1.9.8+ds-2+b3 [5011 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-1.1+b1 [463 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 fonts-lyx all 2.4.2.1-1 [190 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libgfortran-14-dev amd64 14.2.0-8 [878 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-8 [11.7 MB] Get: 130 http://deb.debian.org/debian unstable/main amd64 gfortran-14 amd64 14.2.0-8 [12.2 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B] Get: 132 http://deb.debian.org/debian unstable/main amd64 gfortran amd64 4:14.2.0-1 [1436 B] Get: 133 http://deb.debian.org/debian unstable/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libcdt5 amd64 2.42.4-2+b1 [40.5 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libcgraph6 amd64 2.42.4-2+b1 [64.2 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libaom3 amd64 3.11.0-1 [1879 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.5.0-1+b1 [550 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libabsl20230802 amd64 20230802.1-4 [464 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libgav1-1 amd64 0.19.0-2+b2 [350 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 librav1e0.7 amd64 0.7.1-7+b2 [936 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libsvtav1enc2 amd64 2.2.1+dfsg-2 [2173 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libyuv0 amd64 0.0.1898.20241125-1 [172 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libavif16 amd64 1.1.1-1 [117 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-dav1d amd64 1.19.3-1 [11.2 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libde265-0 amd64 1.0.15-1+b2 [189 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-libde265 amd64 1.19.3-1 [15.0 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libheif1 amd64 1.19.3-1 [489 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.82.2-3 [1501 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 10.0.1-1 [477 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.1-1+b2 [14.1 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b2 [56.3 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 libgd3 amd64 2.3.3-12+b1 [126 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2+b1 [160 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 libltdl7 amd64 2.4.7-8 [393 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.54.0+ds-3 [223 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-3 [54.2 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-3 [35.2 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 libpathplan4 amd64 2.42.4-2+b1 [42.8 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 libgvc6 amd64 2.42.4-2+b1 [685 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 libgvpr2 amd64 2.42.4-2+b1 [193 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 liblab-gamut1 amd64 2.42.4-2+b1 [198 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b1 [188 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-3+b3 [58.8 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.16-1 [212 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 graphviz amd64 2.42.4-2+b1 [616 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 libnl-3-200 amd64 3.7.0-0.3+b1 [59.4 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-200 amd64 3.7.0-0.3+b1 [182 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 libibverbs1 amd64 52.0-2+b1 [62.2 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 ibverbs-providers amd64 52.0-2+b1 [343 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 72.1-5+b1 [210 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.21.3-3 [59.5 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.21.3-3 [41.7 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.21.3-3 [42.0 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.21.3-3 [53.5 kB] Get: 194 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.21.3-3 [126 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 libadios2-common-c++11-dev all 2.10.1+dfsg1-13 [25.5 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 libadios2-common-core-dev amd64 2.10.1+dfsg1-13 [124 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 libadios2-mpi-auxiliary-2.10 amd64 2.10.1+dfsg1-13 [402 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 libadios2-mpi-auxiliary-dev amd64 2.10.1+dfsg1-13 [23.0 kB] Get: 199 http://deb.debian.org/debian unstable/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB] Get: 201 http://deb.debian.org/debian unstable/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 librdmacm1t64 amd64 52.0-2+b1 [70.4 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 libfabric1 amd64 1.17.0-3.1 [631 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10+b1 [132 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10+b1 [54.3 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 libhwloc15 amd64 2.11.2-1 [164 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 libmunge2 amd64 0.5.15-4+b1 [20.0 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b2 [51.9 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 libxnvctrl0 amd64 535.171.04-1+b1 [14.2 kB] Get: 210 http://deb.debian.org/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b2 [40.2 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 libhwloc-plugins amd64 2.11.2-1 [18.1 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 libpmix2t64 amd64 5.0.4-1 [661 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 libllvm17t64 amd64 1:17.0.6-18 [23.6 MB] Get: 214 http://deb.debian.org/debian unstable/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b2 [13.0 MB] Get: 215 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.123-1 [8084 B] Get: 216 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 libhsakmt1 amd64 6.1.2+ds-1 [59.8 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 libhsa-runtime64-1 amd64 6.1.2-2 [535 kB] Get: 220 http://deb.debian.org/debian unstable/main amd64 libamdhip64-5 amd64 5.7.1-5 [8877 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 libibumad3 amd64 52.0-2+b1 [28.2 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 libibmad5 amd64 52.0-2+b1 [43.4 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 libucx0 amd64 1.17.0+ds-3 [1130 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 libopenmpi40 amd64 5.0.6-3 [2360 kB] Get: 225 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get: 226 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get: 227 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-103-1t64 amd64 1.10.10+repack-5+b1 [1311 kB] Get: 228 http://deb.debian.org/debian unstable/main amd64 libpugixml1v5 amd64 1.14-2 [88.6 kB] Get: 229 http://deb.debian.org/debian unstable/main amd64 libyaml-cpp0.8 amd64 0.8.0+dfsg-6+b2 [133 kB] Get: 230 http://deb.debian.org/debian unstable/main amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1+b1 [221 kB] Get: 231 http://deb.debian.org/debian unstable/main amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1+b1 [162 kB] Get: 232 http://deb.debian.org/debian unstable/main amd64 libsodium23 amd64 1.0.18-1+b2 [165 kB] Get: 233 http://deb.debian.org/debian unstable/main amd64 libzmq5 amd64 4.3.5-1+b3 [283 kB] Get: 234 http://deb.debian.org/debian unstable/main amd64 libadios2-mpi-plugins amd64 2.10.1+dfsg1-13 [15.0 kB] Get: 235 http://deb.debian.org/debian unstable/main amd64 libadios2-mpi-core-2.10 amd64 2.10.1+dfsg1-13 [1733 kB] Get: 236 http://deb.debian.org/debian unstable/main amd64 libadios2-mpi-c++11-2.10 amd64 2.10.1+dfsg1-13 [207 kB] Get: 237 http://deb.debian.org/debian unstable/main amd64 libadios2-mpi-core-dev amd64 2.10.1+dfsg1-13 [79.6 kB] Get: 238 http://deb.debian.org/debian unstable/main amd64 libadios2-mpi-c++11-dev amd64 2.10.1+dfsg1-13 [11.1 kB] Get: 239 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.3-1+b1 [21.5 kB] Get: 240 http://deb.debian.org/debian unstable/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-2 [23.8 kB] Get: 241 http://deb.debian.org/debian unstable/main amd64 libamd3 amd64 1:7.8.3+dfsg-2 [40.7 kB] Get: 242 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get: 243 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get: 244 http://deb.debian.org/debian unstable/main amd64 libarpack2t64 amd64 3.9.1-1.2+b1 [104 kB] Get: 245 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.0-4 [161 kB] Get: 246 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.0-4 [4991 kB] Get: 247 http://deb.debian.org/debian unstable/main amd64 libarpack2-dev amd64 3.9.1-1.2+b1 [120 kB] Get: 248 http://deb.debian.org/debian unstable/main amd64 libbasix0.9 amd64 0.9.0-2+b1 [410 kB] Get: 249 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 250 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 251 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 252 http://deb.debian.org/debian unstable/main amd64 pkg-config amd64 1.8.1-4 [14.0 kB] Get: 253 http://deb.debian.org/debian unstable/main amd64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 254 http://deb.debian.org/debian unstable/main amd64 libbasix-dev amd64 0.9.0-2+b1 [67.1 kB] Get: 255 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-3.2+b2 [10.6 MB] Get: 256 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83.0 amd64 1.83.0-3.2+b2 [234 kB] Get: 257 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83-dev amd64 1.83.0-3.2+b2 [235 kB] Get: 258 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.83.0t64 amd64 1.83.0-3.2+b2 [240 kB] Get: 259 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.83-dev amd64 1.83.0-3.2+b2 [246 kB] Get: 260 http://deb.debian.org/debian unstable/main amd64 libboost-chrono-dev amd64 1.83.0.2+b2 [4224 B] Get: 261 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83.0 amd64 1.83.0-3.2+b2 [230 kB] Get: 262 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83.0 amd64 1.83.0-3.2+b2 [333 kB] Get: 263 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83-dev amd64 1.83.0-3.2+b2 [373 kB] Get: 264 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83-dev amd64 1.83.0-3.2+b2 [239 kB] Get: 265 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 266 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-3.2+b2 [282 kB] Get: 267 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83.0 amd64 1.83.0-3.2+b2 [230 kB] Get: 268 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83-dev amd64 1.83.0-3.2+b2 [232 kB] Get: 269 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83-dev amd64 1.83.0-3.2+b2 [298 kB] Get: 270 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem-dev amd64 1.83.0.2+b2 [3628 B] Get: 271 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83.0 amd64 1.83.0-3.2+b2 [330 kB] Get: 272 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 72.1-5+b1 [10.4 MB] Get: 273 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83-dev amd64 1.83.0-3.2+b2 [347 kB] Get: 274 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-3.2+b2 [261 kB] Get: 275 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 276 http://deb.debian.org/debian unstable/main amd64 libboost-math1.83.0 amd64 1.83.0-3.2+b2 [524 kB] Get: 277 http://deb.debian.org/debian unstable/main amd64 libboost-math1.83-dev amd64 1.83.0-3.2+b2 [571 kB] Get: 278 http://deb.debian.org/debian unstable/main amd64 libboost-math-dev amd64 1.83.0.2+b2 [3796 B] Get: 279 http://deb.debian.org/debian unstable/main amd64 libboost-mpi1.83.0 amd64 1.83.0-3.2+b2 [271 kB] Get: 280 http://deb.debian.org/debian unstable/main amd64 openmpi-common all 5.0.6-3 [97.0 kB] Get: 281 http://deb.debian.org/debian unstable/main amd64 libnl-3-dev amd64 3.7.0-0.3+b1 [100 kB] Get: 282 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-dev amd64 3.7.0-0.3+b1 [200 kB] Get: 283 http://deb.debian.org/debian unstable/main amd64 libibverbs-dev amd64 52.0-2+b1 [636 kB] Get: 284 http://deb.debian.org/debian unstable/main amd64 libnuma-dev amd64 2.0.18-1+b1 [36.6 kB] Get: 285 http://deb.debian.org/debian unstable/main amd64 libltdl-dev amd64 2.4.7-8 [165 kB] Get: 286 http://deb.debian.org/debian unstable/main amd64 libhwloc-dev amd64 2.11.2-1 [254 kB] Get: 287 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 288 http://deb.debian.org/debian unstable/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-10+b1 [108 kB] Get: 289 http://deb.debian.org/debian unstable/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-10+b1 [61.1 kB] Get: 290 http://deb.debian.org/debian unstable/main amd64 libevent-dev amd64 2.1.12-stable-10+b1 [305 kB] Get: 291 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 292 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-2 [43.3 kB] Get: 293 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 294 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 295 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 296 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 297 http://deb.debian.org/debian unstable/main amd64 sphinx-common all 7.4.7-4 [731 kB] Get: 298 http://deb.debian.org/debian unstable/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 299 http://deb.debian.org/debian unstable/main amd64 python-babel-localedata all 2.16.0-1 [5696 kB] Get: 300 http://deb.debian.org/debian unstable/main amd64 python3-babel all 2.16.0-1 [114 kB] Get: 301 http://deb.debian.org/debian unstable/main amd64 python3-roman all 4.2-1 [10.4 kB] Get: 302 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 303 http://deb.debian.org/debian unstable/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 304 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 2.1.5-1+b2 [13.9 kB] Get: 305 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 306 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 307 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get: 308 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 309 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.0-1+b1 [140 kB] Get: 310 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.8-2 [41.6 kB] Get: 311 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.2.3-3 [112 kB] Get: 312 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 313 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 314 http://deb.debian.org/debian unstable/main amd64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 315 http://deb.debian.org/debian unstable/main amd64 python3-sphinx all 7.4.7-4 [588 kB] Get: 316 http://deb.debian.org/debian unstable/main amd64 libpmix-dev amd64 5.0.4-1 [3972 kB] Get: 317 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 318 http://deb.debian.org/debian unstable/main amd64 openmpi-bin amd64 5.0.6-3 [188 kB] Get: 319 http://deb.debian.org/debian unstable/main amd64 libopenmpi-dev amd64 5.0.6-3 [1088 kB] Get: 320 http://deb.debian.org/debian unstable/main amd64 mpi-default-dev amd64 1.17 [3148 B] Get: 321 http://deb.debian.org/debian unstable/main amd64 libboost-mpi1.83-dev amd64 1.83.0-3.2+b2 [290 kB] Get: 322 http://deb.debian.org/debian unstable/main amd64 libboost-mpi-dev amd64 1.83.0.2+b2 [3680 B] Get: 323 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.83.0 amd64 1.83.0-3.2+b2 [347 kB] Get: 324 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.83-dev amd64 1.83.0-3.2+b2 [376 kB] Get: 325 http://deb.debian.org/debian unstable/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B] Get: 326 http://deb.debian.org/debian unstable/main amd64 libboost-serialization-dev amd64 1.83.0.2+b2 [3832 B] Get: 327 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83.0 amd64 1.83.0-3.2+b2 [269 kB] Get: 328 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83-dev amd64 1.83.0-3.2+b2 [277 kB] Get: 329 http://deb.debian.org/debian unstable/main amd64 libboost-thread-dev amd64 1.83.0.2+b2 [3624 B] Get: 330 http://deb.debian.org/debian unstable/main amd64 libboost-timer1.83.0 amd64 1.83.0-3.2+b2 [235 kB] Get: 331 http://deb.debian.org/debian unstable/main amd64 libboost-timer1.83-dev amd64 1.83.0-3.2+b2 [237 kB] Get: 332 http://deb.debian.org/debian unstable/main amd64 libboost-timer-dev amd64 1.83.0.2+b2 [3716 B] Get: 333 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b6 [316 kB] Get: 334 http://deb.debian.org/debian unstable/main amd64 libbtf2 amd64 1:7.8.3+dfsg-2 [24.7 kB] Get: 335 http://deb.debian.org/debian unstable/main amd64 libc6-dbg amd64 2.40-4 [7117 kB] Get: 336 http://deb.debian.org/debian unstable/main amd64 libcamd3 amd64 1:7.8.3+dfsg-2 [37.5 kB] Get: 337 http://deb.debian.org/debian unstable/main amd64 libccolamd3 amd64 1:7.8.3+dfsg-2 [39.2 kB] Get: 338 http://deb.debian.org/debian unstable/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-2 [32.5 kB] Get: 339 http://deb.debian.org/debian unstable/main amd64 libcholmod5 amd64 1:7.8.3+dfsg-2 [638 kB] Get: 340 http://deb.debian.org/debian unstable/main amd64 libcombblas2.0.0t64 amd64 2.0.0-6+b1 [265 kB] Get: 341 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.7-2+b1 [123 kB] Get: 342 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.21.3-3 [15.7 kB] Get: 343 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.5.18+dfsg-3+b1 [303 kB] Get: 344 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB] Get: 345 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 346 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get: 347 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get: 348 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.22.0-1 [598 kB] Get: 349 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.8-2 [449 kB] Get: 350 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.8-2 [449 kB] Get: 351 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-2+b1 [208 kB] Get: 352 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.19.0-3+b3 [98.9 kB] Get: 353 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10-1+b1 [1317 kB] Get: 354 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.8-2 [1391 kB] Get: 355 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 356 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.3.2-2 [2742 kB] Get: 357 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 358 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.6+dfsg-1+b1 [365 kB] Get: 359 http://deb.debian.org/debian unstable/main amd64 libcurl4-openssl-dev amd64 8.11.0-1 [461 kB] Get: 360 http://deb.debian.org/debian unstable/main amd64 libcxsparse4 amd64 1:7.8.3+dfsg-2 [84.2 kB] Get: 361 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Get: 362 http://deb.debian.org/debian unstable/main amd64 libfftw3-double3 amd64 3.3.10-2+b1 [781 kB] Get: 363 http://deb.debian.org/debian unstable/main amd64 libfftw3-long3 amd64 3.3.10-2+b1 [347 kB] Get: 364 http://deb.debian.org/debian unstable/main amd64 libfftw3-quad3 amd64 3.3.10-2+b1 [618 kB] Get: 365 http://deb.debian.org/debian unstable/main amd64 libfftw3-single3 amd64 3.3.10-2+b1 [809 kB] Get: 366 http://deb.debian.org/debian unstable/main amd64 libfftw3-bin amd64 3.3.10-2+b1 [51.3 kB] Get: 367 http://deb.debian.org/debian unstable/main amd64 libfftw3-dev amd64 3.3.10-2+b1 [2118 kB] Get: 368 http://deb.debian.org/debian unstable/main amd64 libfftw3-mpi3 amd64 3.3.10-2+b1 [63.0 kB] Get: 369 http://deb.debian.org/debian unstable/main amd64 libfftw3-mpi-dev amd64 3.3.10-2+b1 [67.8 kB] Get: 370 http://deb.debian.org/debian unstable/main amd64 libfmt-dev amd64 10.1.1+ds1-4 [177 kB] Get: 371 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-fortran-102t64 amd64 1.10.10+repack-5+b1 [90.4 kB] Get: 372 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-hl-100t64 amd64 1.10.10+repack-5+b1 [64.3 kB] Get: 373 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-hl-fortran-100t64 amd64 1.10.10+repack-5+b1 [41.1 kB] Get: 374 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-cpp-103-1t64 amd64 1.10.10+repack-5+b1 [131 kB] Get: 375 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-hl-cpp-100t64 amd64 1.10.10+repack-5+b1 [21.8 kB] Get: 376 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3+b1 [292 kB] Get: 377 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-3+b1 [72.2 kB] Get: 378 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-dev amd64 1.10.10+repack-5+b1 [2720 kB] Get: 379 http://deb.debian.org/debian unstable/main amd64 libhdf5-mpi-dev amd64 1.10.10+repack-5+b1 [15.9 kB] Get: 380 http://deb.debian.org/debian unstable/main amd64 libmetis5 amd64 5.1.0.dfsg-7+b2 [176 kB] Get: 381 http://deb.debian.org/debian unstable/main amd64 libptscotch-7.0 amd64 7.0.5-2+b1 [657 kB] Get: 382 http://deb.debian.org/debian unstable/main amd64 libsuperlu-dist8 amd64 8.2.1+dfsg1-5+b1 [611 kB] Get: 383 http://deb.debian.org/debian unstable/main amd64 libhypre-2.32.0 amd64 2.32.0-2+b1 [1713 kB] Get: 384 http://deb.debian.org/debian unstable/main amd64 libsuperlu7 amd64 7.0.0+dfsg1-2 [174 kB] Get: 385 http://deb.debian.org/debian unstable/main amd64 libsuperlu-dev amd64 7.0.0+dfsg1-2 [21.9 kB] Get: 386 http://deb.debian.org/debian unstable/main amd64 libhypre-dev amd64 2.32.0-2+b1 [1988 kB] Get: 387 http://deb.debian.org/debian unstable/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 388 http://deb.debian.org/debian unstable/main amd64 libjs-modernizr all 3.13.0-0.1 [191 kB] Get: 389 http://deb.debian.org/debian unstable/main amd64 libklu2 amd64 1:7.8.3+dfsg-2 [90.6 kB] Get: 390 http://deb.debian.org/debian unstable/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b2 [29.4 kB] Get: 391 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 392 http://deb.debian.org/debian unstable/main amd64 libldl3 amd64 1:7.8.3+dfsg-2 [24.5 kB] Get: 393 http://deb.debian.org/debian unstable/main amd64 mpi-default-bin amd64 1.17 [2372 B] Get: 394 http://deb.debian.org/debian unstable/main amd64 libscalapack-openmpi2.2 amd64 2.2.1-7+b1 [1580 kB] Get: 395 http://deb.debian.org/debian unstable/main amd64 libmumps-5.7 amd64 5.7.3-3+b1 [1967 kB] Get: 396 http://deb.debian.org/debian unstable/main amd64 libmumps-headers-dev all 5.7.3-3 [36.3 kB] Get: 397 http://deb.debian.org/debian unstable/main amd64 libscalapack-openmpi-dev amd64 2.2.1-7+b1 [11.3 kB] Get: 398 http://deb.debian.org/debian unstable/main amd64 libscalapack-mpi-dev amd64 2.2.1-7+b1 [6420 B] Get: 399 http://deb.debian.org/debian unstable/main amd64 libmumps-dev amd64 5.7.3-3+b1 [1863 kB] Get: 400 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.0-2+b4 [199 kB] Get: 401 http://deb.debian.org/debian unstable/main amd64 libparpack2t64 amd64 3.9.1-1.2+b1 [99.9 kB] Get: 402 http://deb.debian.org/debian unstable/main amd64 libparpack2-dev amd64 3.9.1-1.2+b1 [112 kB] Get: 403 http://deb.debian.org/debian unstable/main amd64 libumfpack6 amd64 1:7.8.3+dfsg-2 [280 kB] Get: 404 http://deb.debian.org/debian unstable/main amd64 libparu1 amd64 1:7.8.3+dfsg-2 [65.1 kB] Get: 405 http://deb.debian.org/debian unstable/main amd64 libspqr4 amd64 1:7.8.3+dfsg-2 [146 kB] Get: 406 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-1+b2 [52.7 kB] Get: 407 http://deb.debian.org/debian unstable/main amd64 libpetsc-complex3.22 amd64 3.22.1+dfsg1-2 [8031 kB] Get: 408 http://deb.debian.org/debian unstable/main amd64 libsuitesparse-mongoose3 amd64 1:7.8.3+dfsg-2 [47.3 kB] Get: 409 http://deb.debian.org/debian unstable/main amd64 librbio4 amd64 1:7.8.3+dfsg-2 [39.9 kB] Get: 410 http://deb.debian.org/debian unstable/main amd64 libspex3 amd64 1:7.8.3+dfsg-2 [59.9 kB] Get: 411 http://deb.debian.org/debian unstable/main amd64 libsuitesparse-dev amd64 1:7.8.3+dfsg-2 [1476 kB] Get: 412 http://deb.debian.org/debian unstable/main amd64 libscotch-7.0 amd64 7.0.5-2+b1 [412 kB] Get: 413 http://deb.debian.org/debian unstable/main amd64 libscotch-dev amd64 7.0.5-2+b1 [1576 kB] Get: 414 http://deb.debian.org/debian unstable/main amd64 libptscotch-dev amd64 7.0.5-2+b1 [1376 kB] Get: 415 http://deb.debian.org/debian unstable/main amd64 opencl-c-headers all 3.0~2024.10.24-2 [46.8 kB] Get: 416 http://deb.debian.org/debian unstable/main amd64 opencl-clhpp-headers all 3.0~2024.10.24-2 [50.7 kB] Get: 417 http://deb.debian.org/debian unstable/main amd64 ocl-icd-opencl-dev amd64 2.3.2-1+b2 [8672 B] Get: 418 http://deb.debian.org/debian unstable/main amd64 libsuperlu-dist-dev amd64 8.2.1+dfsg1-5+b1 [904 kB] Get: 419 http://deb.debian.org/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 420 http://deb.debian.org/debian unstable/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get: 421 http://deb.debian.org/debian unstable/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB] Get: 422 http://deb.debian.org/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.5-1 [44.3 kB] Get: 423 http://deb.debian.org/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 424 http://deb.debian.org/debian unstable/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB] Get: 425 http://deb.debian.org/debian unstable/main amd64 libx11-dev amd64 2:1.8.10-2 [891 kB] Get: 426 http://deb.debian.org/debian unstable/main amd64 libyaml-dev amd64 0.2.5-1+b2 [63.5 kB] Get: 427 http://deb.debian.org/debian unstable/main amd64 libpetsc3.22-dev-common all 3.22.1+dfsg1-2 [310 kB] Get: 428 http://deb.debian.org/debian unstable/main amd64 valgrind amd64 1:3.20.0-2.1 [14.3 MB] Get: 429 http://deb.debian.org/debian unstable/main amd64 valgrind-mpi amd64 1:3.20.0-2.1 [123 kB] Get: 430 http://deb.debian.org/debian unstable/main amd64 libpetsc-complex3.22-dev amd64 3.22.1+dfsg1-2 [7923 kB] Get: 431 http://deb.debian.org/debian unstable/main amd64 libpetsc-complex-dev all 3.22.1+dfsg1-2 [12.8 kB] Get: 432 http://deb.debian.org/debian unstable/main amd64 libpetsc-real3.22 amd64 3.22.1+dfsg1-2 [7853 kB] Get: 433 http://deb.debian.org/debian unstable/main amd64 libpetsc-real3.22-dev amd64 3.22.1+dfsg1-2 [7948 kB] Get: 434 http://deb.debian.org/debian unstable/main amd64 libpetsc-real-dev all 3.22.1+dfsg1-2 [12.8 kB] Get: 435 http://deb.debian.org/debian unstable/main amd64 libpugixml-dev amd64 1.14-2 [109 kB] Get: 436 http://deb.debian.org/debian unstable/main amd64 libpython3.12t64 amd64 3.12.7-3 [2153 kB] Get: 437 http://deb.debian.org/debian unstable/main amd64 libpython3.12-dev amd64 3.12.7-3 [5124 kB] Get: 438 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.12.7-1 [9976 B] Get: 439 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [1992 kB] Get: 440 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.0-2 [2137 kB] Get: 441 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.0-2 [4994 kB] Get: 442 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.12.7-1 [1072 B] Get: 443 http://deb.debian.org/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-6+b2 [248 kB] Get: 444 http://deb.debian.org/debian unstable/main amd64 libslepc-complex3.22 amd64 3.22.1+dfsg1-2 [1425 kB] Get: 445 http://deb.debian.org/debian unstable/main amd64 libslepc-complex3.22-dev amd64 3.22.1+dfsg1-2 [6419 kB] Get: 446 http://deb.debian.org/debian unstable/main amd64 libslepc-complex-dev amd64 3.22.1+dfsg1-2 [15.9 kB] Get: 447 http://deb.debian.org/debian unstable/main amd64 libslepc-real3.22 amd64 3.22.1+dfsg1-2 [1388 kB] Get: 448 http://deb.debian.org/debian unstable/main amd64 libslepc-real3.22-dev amd64 3.22.1+dfsg1-2 [6394 kB] Get: 449 http://deb.debian.org/debian unstable/main amd64 libslepc-real-dev amd64 3.22.1+dfsg1-2 [15.9 kB] Get: 450 http://deb.debian.org/debian unstable/main amd64 libspdlog1.12 amd64 1:1.12.0+ds-2+b3 [104 kB] Get: 451 http://deb.debian.org/debian unstable/main amd64 libspdlog-dev amd64 1:1.12.0+ds-2+b3 [85.5 kB] Get: 452 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.4.0-0.1+b1 [111 kB] Get: 453 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.4.0-0.1+b1 [123 kB] Get: 454 http://deb.debian.org/debian unstable/main amd64 libxml2-dev amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [795 kB] Get: 455 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.35-1.1+b1 [233 kB] Get: 456 http://deb.debian.org/debian unstable/main amd64 robin-map-dev all 1.3.0-1 [29.8 kB] Get: 457 http://deb.debian.org/debian unstable/main amd64 nanobind-dev all 2.2.0-2 [159 kB] Get: 458 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 459 http://deb.debian.org/debian unstable/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get: 460 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.45.1-1 [56.7 kB] Get: 461 http://deb.debian.org/debian unstable/main amd64 python3-build all 1.2.2-1 [36.0 kB] Get: 462 http://deb.debian.org/debian unstable/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 463 http://deb.debian.org/debian unstable/main amd64 pybuild-plugin-pyproject all 6.20241024 [11.4 kB] Get: 464 http://deb.debian.org/debian unstable/main amd64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 465 http://deb.debian.org/debian unstable/main amd64 python-petsc4py-doc all 3.22.1-2 [778 kB] Get: 466 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.0-2 [730 kB] Get: 467 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.12.7-1 [1052 B] Get: 468 http://deb.debian.org/debian unstable/main amd64 python3.12-dev amd64 3.12.7-3 [505 kB] Get: 469 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.12.7-1 [26.1 kB] Get: 470 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.0-2 [504 kB] Get: 471 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.12.7-1 [1076 B] Get: 472 http://deb.debian.org/debian unstable/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 473 http://deb.debian.org/debian unstable/main amd64 python3-attr all 24.2.0-1 [68.4 kB] Get: 474 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [4738 kB] Get: 475 http://deb.debian.org/debian unstable/main amd64 python3-ufl all 2024.2.0-2 [150 kB] Get: 476 http://deb.debian.org/debian unstable/main amd64 python3-basix amd64 0.9.0-2+b1 [134 kB] Get: 477 http://deb.debian.org/debian unstable/main amd64 python3-brotli amd64 1.1.0-2+b6 [321 kB] Get: 478 http://deb.debian.org/debian unstable/main amd64 python3-cffi-backend amd64 1.17.1-2+b1 [96.2 kB] Get: 479 http://deb.debian.org/debian unstable/main amd64 python3-ply all 3.11-7 [62.6 kB] Get: 480 http://deb.debian.org/debian unstable/main amd64 python3-pycparser all 2.22-2 [78.0 kB] Get: 481 http://deb.debian.org/debian unstable/main amd64 python3-cffi all 1.17.1-2 [89.4 kB] Get: 482 http://deb.debian.org/debian unstable/main amd64 python3-contourpy amd64 1.3.0-2+b1 [264 kB] Get: 483 http://deb.debian.org/debian unstable/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get: 484 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 485 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 486 http://deb.debian.org/debian unstable/main amd64 python3-distlib all 0.3.9-1 [257 kB] Get: 487 http://deb.debian.org/debian unstable/main amd64 python3-fastjsonschema all 2.20.0-1 [21.8 kB] Get: 488 http://deb.debian.org/debian unstable/main amd64 python3-ffcx all 1:0.9.0-2 [94.9 kB] Get: 489 http://deb.debian.org/debian unstable/main amd64 python3-filelock all 3.16.1-1 [12.6 kB] Get: 490 http://deb.debian.org/debian unstable/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get: 491 http://deb.debian.org/debian unstable/main amd64 python3-fs all 2.4.16-5 [95.1 kB] Get: 492 http://deb.debian.org/debian unstable/main amd64 python3-lxml amd64 5.3.0-1+b1 [1676 kB] Get: 493 http://deb.debian.org/debian unstable/main amd64 python3-lz4 amd64 4.4.0+dfsg-1 [25.5 kB] Get: 494 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.14.1-3 [20.5 MB] Get: 495 http://deb.debian.org/debian unstable/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 496 http://deb.debian.org/debian unstable/main amd64 python3-sympy all 1.13.3-1 [4147 kB] Get: 497 http://deb.debian.org/debian unstable/main amd64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 498 http://deb.debian.org/debian unstable/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get: 499 http://deb.debian.org/debian unstable/main amd64 python3-fonttools amd64 4.55.0-3 [1634 kB] Get: 500 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 501 http://deb.debian.org/debian unstable/main amd64 python3-rpds-py amd64 0.21.0-2 [287 kB] Get: 502 http://deb.debian.org/debian unstable/main amd64 python3-referencing all 0.35.1-1 [23.5 kB] Get: 503 http://deb.debian.org/debian unstable/main amd64 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get: 504 http://deb.debian.org/debian unstable/main amd64 python3-jsonschema all 4.19.2-5 [71.4 kB] Get: 505 http://deb.debian.org/debian unstable/main amd64 python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 506 http://deb.debian.org/debian unstable/main amd64 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Get: 507 http://deb.debian.org/debian unstable/main amd64 python3-jupyter-core all 5.7.2-4 [35.1 kB] Get: 508 http://deb.debian.org/debian unstable/main amd64 python3-mdurl all 0.1.2-1 [9444 B] Get: 509 http://deb.debian.org/debian unstable/main amd64 python3-markdown-it all 3.0.0-2 [62.5 kB] Get: 510 http://deb.debian.org/debian unstable/main amd64 python3-mdit-py-plugins all 0.4.2-1 [32.4 kB] Get: 511 http://deb.debian.org/debian unstable/main amd64 python3-nbformat all 5.9.1-1 [45.1 kB] Get: 512 http://deb.debian.org/debian unstable/main amd64 python3-yaml amd64 6.0.2-1+b1 [178 kB] Get: 513 http://deb.debian.org/debian unstable/main amd64 python3-jupytext all 1.16.1+ds1-2 [87.2 kB] Get: 514 http://deb.debian.org/debian unstable/main amd64 python3-kiwisolver amd64 1.4.7-2+b1 [77.0 kB] Get: 515 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 10.4.0-1+b1 [522 kB] Get: 516 http://deb.debian.org/debian unstable/main amd64 python3.12-tk amd64 3.12.7-3 [112 kB] Get: 517 http://deb.debian.org/debian unstable/main amd64 python3.13-tk amd64 3.13.0-2 [103 kB] Get: 518 http://deb.debian.org/debian unstable/main amd64 python3-tk amd64 3.12.7-1 [9444 B] Get: 519 http://deb.debian.org/debian unstable/main amd64 python3-pil.imagetk amd64 10.4.0-1+b1 [79.8 kB] Get: 520 http://deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 521 http://deb.debian.org/debian unstable/main amd64 python3-matplotlib amd64 3.8.3-3+b1 [5654 kB] Get: 522 http://deb.debian.org/debian unstable/main amd64 python3-mpi4py amd64 4.0.1-6+b1 [1000 kB] Get: 523 http://deb.debian.org/debian unstable/main amd64 python3-myst-parser all 4.0.0-1 [78.7 kB] Get: 524 http://deb.debian.org/debian unstable/main amd64 python3-nanobind all 2.2.0-2 [39.5 kB] Get: 525 http://deb.debian.org/debian unstable/main amd64 python3-pathspec all 0.12.1-1 [28.1 kB] Get: 526 http://deb.debian.org/debian unstable/main amd64 swig amd64 4.2.1-1 [1437 kB] Get: 527 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py-real3.22 amd64 3.22.1-2 [1994 kB] Get: 528 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py-real all 3.22.1-2 [10.7 kB] Get: 529 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py-complex3.22 amd64 3.22.1-2 [1998 kB] Get: 530 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py-complex all 3.22.1-2 [10.7 kB] Get: 531 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py all 3.22.1-2 [10.9 kB] Get: 532 http://deb.debian.org/debian unstable/main amd64 python3-pip all 24.3.1+dfsg-1 [1441 kB] Get: 533 http://deb.debian.org/debian unstable/main amd64 python3-pip-whl all 24.3.1+dfsg-1 [1501 kB] Get: 534 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 535 http://deb.debian.org/debian unstable/main amd64 python3-pusimp all 0.1.1-1 [10.1 kB] Get: 536 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-metadata all 0.9.0-1 [20.8 kB] Get: 537 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.3-1 [249 kB] Get: 538 http://deb.debian.org/debian unstable/main amd64 python3-scikit-build-core all 0.10.7-2 [123 kB] Get: 539 http://deb.debian.org/debian unstable/main amd64 python3-setuptools-whl all 75.2.0-1 [1249 kB] Get: 540 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-real3.22 amd64 3.22.1-2 [492 kB] Get: 541 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-real all 3.22.1-2 [6616 B] Get: 542 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-complex3.22 amd64 3.22.1-2 [490 kB] Get: 543 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-complex all 3.22.1-2 [6688 B] Get: 544 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py all 3.22.1-2 [6808 B] Get: 545 http://deb.debian.org/debian unstable/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-1 [1023 kB] Get: 546 http://deb.debian.org/debian unstable/main amd64 python3-sphinxcontrib.jquery all 4.1-5 [7348 B] Get: 547 http://deb.debian.org/debian unstable/main amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-1 [29.5 kB] Get: 548 http://deb.debian.org/debian unstable/main amd64 python3-wheel-whl all 0.45.1-1 [75.3 kB] Get: 549 http://deb.debian.org/debian unstable/main amd64 python3-virtualenv all 20.28.0+ds-1 [71.3 kB] Fetched 473 MB in 16s (29.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19968 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_amd64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:amd64 (3.12.7-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20314 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_amd64.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... 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Setting up libspex3:amd64 (1:7.8.3+dfsg-2) ... Setting up libboost-chrono-dev:amd64 (1.83.0.2+b2) ... Setting up libfftw3-bin (3.3.10-2+b1) ... Setting up libsuitesparse-mongoose3:amd64 (1:7.8.3+dfsg-2) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libboost-math-dev:amd64 (1.83.0.2+b2) ... Setting up libwebpdemux2:amd64 (1.4.0-0.1+b1) ... Setting up libevent-openssl-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libpugixml-dev:amd64 (1.14-2) ... Setting up libaec-dev:amd64 (1.1.3-1+b1) ... Setting up libcxsparse4:amd64 (1:7.8.3+dfsg-2) ... Setting up libboost-serialization1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libjpeg-dev:amd64 (1:2.1.5-3+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up libboost-filesystem1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up libcamd3:amd64 (1:7.8.3+dfsg-2) ... Setting up libsuperlu7:amd64 (7.0.0+dfsg1-2) ... Setting up gfortran-14-x86-64-linux-gnu (14.2.0-8) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:amd64 (2.0.18-1+b1) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.3+b1) ... Setting up libxnvctrl0:amd64 (535.171.04-1+b1) ... Setting up dh-autoreconf (20) ... Setting up libltdl-dev:amd64 (2.4.7-8) ... Setting up libthai0:amd64 (0.1.29-2+b1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libxdmcp-dev:amd64 (1:1.1.5-1) ... Setting up libxml2-dev:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libboost-timer1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libllvm17t64:amd64 (1:17.0.6-18) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up librbio4:amd64 (1:7.8.3+dfsg-2) ... Setting up libboost-date-time1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libldap-dev:amd64 (2.5.18+dfsg-3+b1) ... Setting up opencl-clhpp-headers (3.0~2024.10.24-2) ... Setting up liblapack-dev:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libeigen3-dev (3.4.0-4) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libfmt-dev:amd64 (10.1.1+ds1-4) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up pkg-config:amd64 (1.8.1-4) ... Setting up libgav1-1:amd64 (0.19.0-2+b2) ... Setting up libboost-serialization-dev:amd64 (1.83.0.2+b2) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up ocl-icd-opencl-dev:amd64 (2.3.2-1+b2) ... Setting up libevent-extra-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libccolamd3:amd64 (1:7.8.3+dfsg-2) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libgvpr2:amd64 (2.42.4-2+b1) ... Setting up libdrm2:amd64 (2.4.123-1) ... Setting up libnl-3-dev:amd64 (3.7.0-0.3+b1) ... Setting up libbasix0.9:amd64 (0.9.0-2+b1) ... Setting up groff-base (1.23.0-5) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:amd64 (1.1.35-1.1+b1) ... Setting up libharfbuzz0b:amd64 (10.0.1-1) ... Setting up libhwloc-dev:amd64 (2.11.2-1) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up libxss1:amd64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:amd64 (2.15.0-1.1+b1) ... Setting up gfortran-14 (14.2.0-8) ... Setting up libsuperlu-dev:amd64 (7.0.0+dfsg1-2) ... Setting up libbasix-dev:amd64 (0.9.0-2+b1) ... Setting up libsm6:amd64 (2:1.2.4-1) ... Setting up libarchive13t64:amd64 (3.7.4-1.1) ... Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... Setting up libfftw3-dev:amd64 (3.3.10-2+b1) ... Setting up libboost-timer-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-filesystem-dev:amd64 (1.83.0.2+b2) ... Setting up libclang-cpp19 (1:19.1.4-1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... Setting up libpython3.13:amd64 (3.13.0-2) ... Setting up libboost-thread1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libgnutls28-dev:amd64 (3.8.8-2) ... Setting up libnghttp2-dev:amd64 (1.64.0-1) ... Setting up libibverbs1:amd64 (52.0-2+b1) ... Setting up fontconfig (2.15.0-1.1+b1) ... Regenerating fonts cache... done. Setting up libavif16:amd64 (1.1.1-1) ... Setting up libcholmod5:amd64 (1:7.8.3+dfsg-2) ... Setting up libxft2:amd64 (2.3.6-1+b2) ... Setting up libarpack2-dev:amd64 (3.9.1-1.2+b1) ... Setting up libxcb1-dev:amd64 (1.17.0-2+b1) ... Setting up libzmq5:amd64 (4.3.5-1+b3) ... Setting up libcurl4t64:amd64 (8.11.0-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up ibverbs-providers:amd64 (52.0-2+b1) ... Setting up libspqr4:amd64 (1:7.8.3+dfsg-2) ... Setting up python3.13 (3.13.0-2) ... Setting up python3-pip-whl (24.3.1+dfsg-1) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up openssh-client (1:9.9p1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:amd64 (8.6.15-1) ... Setting up nanobind-dev (2.2.0-2) ... Setting up libpango-1.0-0:amd64 (1.54.0+ds-3) ... Setting up python3.12-tk (3.12.7-3) ... Setting up libx11-dev:amd64 (2:1.8.10-2) ... Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up libhwloc-plugins:amd64 (2.11.2-1) ... Setting up libspdlog-dev:amd64 (1:1.12.0+ds-2+b3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1) ... Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:amd64 (1.18.2-2) ... Setting up python3.13-tk (3.13.0-2) ... Setting up libnl-route-3-dev:amd64 (3.7.0-0.3+b1) ... Setting up doxygen (1.9.8+ds-2+b3) ... Setting up libklu2:amd64 (1:7.8.3+dfsg-2) ... Setting up libgssrpc4t64:amd64 (1.21.3-3) ... Setting up libraqm0:amd64 (0.10.1-1+b2) ... Setting up libpython3.13-dev:amd64 (3.13.0-2) ... Setting up sphinx-common (7.4.7-4) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2+b1) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libevent-dev (2.1.12-stable-10+b1) ... Setting up libpmix2t64:amd64 (5.0.4-1) ... Setting up libumfpack6:amd64 (1:7.8.3+dfsg-2) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up cmake (3.31.1-1) ... Setting up librdmacm1t64:amd64 (52.0-2+b1) ... Setting up libpangoft2-1.0-0:amd64 (1.54.0+ds-3) ... Setting up libhsakmt1:amd64 (6.1.2+ds-1) ... Setting up libboost-thread-dev:amd64 (1.83.0.2+b2) ... Setting up libpangocairo-1.0-0:amd64 (1.54.0+ds-3) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-3) ... Setting up libfabric1:amd64 (1.17.0-3.1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up libxmu6:amd64 (2:1.1.3-3+b3) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ... Setting up libkdb5-10t64:amd64 (1.21.3-3) ... Setting up python3.13-dev (3.13.0-2) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libxaw7:amd64 (2:1.0.16-1) ... Setting up python-petsc4py-doc (3.22.1-2) ... Setting up libibverbs-dev:amd64 (52.0-2+b1) ... Setting up libparu1:amd64 (1:7.8.3+dfsg-2) ... Setting up libpython3.12t64:amd64 (3.12.7-3) ... Setting up libhsa-runtime64-1:amd64 (6.1.2-2) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-3) ... Setting up libpython3-stdlib:amd64 (3.12.7-1) ... Setting up krb5-multidev:amd64 (1.21.3-3) ... Setting up libsuitesparse-dev:amd64 (1:7.8.3+dfsg-2) ... Setting up python3 (3.12.7-1) ... /usr/share/petsc/3.22/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l' axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') /usr/share/petsc/3.22/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l' axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:253: SyntaxWarning: invalid escape sequence '\d' print("\documentclass{article}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:256: SyntaxWarning: invalid escape sequence '\c' print("\centering") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:259: SyntaxWarning: invalid escape sequence '\m' print(" & & \multicolumn{4}{c}{--------------- Percent of -------------} & \\\\") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:261: SyntaxWarning: invalid escape sequence '\h' print("\hline") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:321: SyntaxWarning: invalid escape sequence '\e' print("\end{tabular}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:322: SyntaxWarning: invalid escape sequence '\e' print("\end{table}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:323: SyntaxWarning: invalid escape sequence '\e' print("\end{document}") Setting up libpython3.12-dev:amd64 (3.12.7-3) ... Setting up python3-distlib (0.3.9-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-markupsafe (2.1.5-1+b2) ... Setting up python3-wheel (0.45.1-1) ... Setting up python3-platformdirs (4.3.6-1) ... Setting up python3-tz (2024.1-2) ... Setting up libkrb5-dev:amd64 (1.21.3-3) ... Setting up python3-pil:amd64 (10.4.0-1+b1) ... Setting up python3-roman (4.2-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.2-1) ... Setting up libamdhip64-5 (5.7.1-5) ... Setting up python3-pyproject-hooks (1.2.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up libcurl4-openssl-dev:amd64 (8.11.0-1) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up python3-brotli (1.1.0-2+b6) ... Setting up python3-mdurl (0.1.2-1) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.7-2+b1) ... Setting up python3-idna (3.8-2) ... Setting up python3.12-dev (3.12.7-3) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-pip (24.3.1+dfsg-1) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up python3-urllib3 (2.2.3-3) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-markdown-it (3.0.0-2) ... Setting up python3-rpds-py (0.21.0-2) ... Setting up python3-fastjsonschema (2.20.0-1) ... Setting up python3-lxml:amd64 (5.3.0-1+b1) ... Setting up python3-traitlets (5.14.3+really5.14.3-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-build (1.2.2-1) ... Setting up python3-pathspec (0.12.1-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-pusimp (0.1.1-1) ... Setting up python3-jupyter-core (5.7.2-4) ... Setting up python3-cffi-backend:amd64 (1.17.1-2+b1) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.13.3-1) ... Setting up python3-attr (24.2.0-1) ... Setting up libucx0:amd64 (1.17.0+ds-3) ... Setting up python3-nanobind (2.2.0-2) ... Setting up python3-filelock (3.16.1-1) ... Setting up libpython3-dev:amd64 (3.12.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-pyproject-metadata (0.9.0-1) ... Setting up python3-lz4 (4.4.0+dfsg-1) ... Setting up python3-defusedxml (0.7.1-2) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up python3-ply (3.11-7) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-mdit-py-plugins (0.4.2-1) ... Setting up python3-virtualenv (20.28.0+ds-1) ... Setting up python3-all (3.12.7-1) ... Setting up python3-yaml (6.0.2-1+b1) ... Setting up python3-tk:amd64 (3.12.7-1) ... Setting up python3-pycparser (2.22-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pil.imagetk:amd64 (10.4.0-1+b1) ... Setting up libpython3-all-dev:amd64 (3.12.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.12.7-1) ... Setting up python3-referencing (0.35.1-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-all-dev (3.12.7-1) ... Setting up libopenmpi40:amd64 (5.0.6-3) ... Setting up libptscotch-7.0:amd64 (7.0.5-2+b1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-scikit-build-core (0.10.7-2) ... Setting up python3-babel (2.16.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-cffi (1.17.1-2) ... Setting up libcombblas2.0.0t64:amd64 (2.0.0-6+b1) ... Setting up libfftw3-mpi3:amd64 (3.3.10-2+b1) ... Setting up libhdf5-openmpi-103-1t64:amd64 (1.10.10+repack-5+b1) ... Setting up python3-fs (2.4.16-5) ... Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up libhdf5-openmpi-fortran-102t64:amd64 (1.10.10+repack-5+b1) ... Setting up libparpack2t64:amd64 (3.9.1-1.2+b1) ... Setting up libhdf5-openmpi-cpp-103-1t64:amd64 (1.10.10+repack-5+b1) ... Setting up python3-contourpy (1.3.0-2+b1) ... Setting up libboost-mpi1.83.0 (1.83.0-3.2+b2) ... Setting up python3-jsonschema-specifications (2023.12.1-2) ... Setting up openmpi-bin (5.0.6-3) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up dh-python (6.20241024) ... Setting up python3-scipy (1.14.1-3) ... Setting up python3-ufl (2024.2.0-2) ... Setting up libsuperlu-dist8:amd64 (8.2.1+dfsg1-5+b1) ... Setting up pybuild-plugin-pyproject (6.20241024) ... Setting up libfftw3-mpi-dev:amd64 (3.3.10-2+b1) ... Setting up mpi-default-bin (1.17) ... Setting up libhdf5-openmpi-hl-100t64:amd64 (1.10.10+repack-5+b1) ... Setting up libhypre-2.32.0:amd64 (2.32.0-2+b1) ... Setting up python3-mpi4py (4.0.1-6+b1) ... Setting up libsuperlu-dist-dev:amd64 (8.2.1+dfsg1-5+b1) ... Setting up libhdf5-openmpi-hl-fortran-100t64:amd64 (1.10.10+repack-5+b1) ... Setting up python3-jsonschema (4.19.2-5) ... Setting up libhdf5-openmpi-hl-cpp-100t64:amd64 (1.10.10+repack-5+b1) ... Setting up python3-basix (0.9.0-2+b1) ... Setting up libscalapack-openmpi2.2:amd64 (2.2.1-7+b1) ... Setting up python3-nbformat (5.9.1-1) ... Setting up python3-ffcx (1:0.9.0-2) ... Setting up libmumps-5.7:amd64 (5.7.3-3+b1) ... Setting up python3-jupytext (1.16.1+ds1-2) ... Setting up libscalapack-openmpi-dev:amd64 (2.2.1-7+b1) ... Setting up libpetsc-complex3.22:amd64 (3.22.1+dfsg1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_complex.so.3.22.1 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.22 (libpetsc.so.3.22) in auto mode Setting up python3-petsc4py-complex3.22 (3.22.1-2) ... Setting up python3-petsc4py (3.22.1-2) ... Setting up libpetsc-real3.22:amd64 (3.22.1+dfsg1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.22.1 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.22 (libpetsc.so.3.22) in auto mode Setting up python3-petsc4py-real3.22 (3.22.1-2) ... Setting up libslepc-complex3.22 (3.22.1+dfsg1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_complex.so.3.22.1 to provide /usr/lib/x86_64-linux-gnu/libslepc.so.3.22 (libslepc.so.3.22) in auto mode Setting up python3-petsc4py-complex (3.22.1-2) ... Setting up libslepc-real3.22 (3.22.1+dfsg1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.22.1 to provide /usr/lib/x86_64-linux-gnu/libslepc.so.3.22 (libslepc.so.3.22) in auto mode Setting up python3-slepc4py-complex3.22 (3.22.1-2) ... Setting up python3-petsc4py-real (3.22.1-2) ... Setting up python3-slepc4py-complex (3.22.1-2) ... Setting up python3-slepc4py-real3.22 (3.22.1-2) ... Setting up python3-slepc4py (3.22.1-2) ... Setting up python3-slepc4py-real (3.22.1-2) ... Setting up python3-fonttools (4.55.0-3) ... Setting up libadios2-mpi-plugins:amd64 (2.10.1+dfsg1-13) ... Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... Setting up libheif-plugin-dav1d:amd64 (1.19.3-1) ... Setting up python3-matplotlib (3.8.3-3+b1) ... Setting up libadios2-mpi-core-2.10:amd64 (2.10.1+dfsg1-13) ... Setting up libheif1:amd64 (1.19.3-1) ... Setting up libadios2-mpi-c++11-2.10:amd64 (2.10.1+dfsg1-13) ... Setting up libadios2-mpi-core-dev:amd64 (2.10.1+dfsg1-13) ... Setting up libgd3:amd64 (2.3.3-12+b1) ... Setting up libgvc6 (2.42.4-2+b1) ... Setting up graphviz (2.42.4-2+b1) ... Setting up libheif-plugin-libde265:amd64 (1.19.3-1) ... Setting up libadios2-mpi-c++11-dev:amd64 (2.10.1+dfsg1-13) ... Processing triggers for libc-bin (2.40-4) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up python3-sphinx (7.4.7-4) ... Setting up python3-myst-parser (4.0.0-1) ... Setting up libpmix-dev:amd64 (5.0.4-1) ... Setting up python3-sphinxcontrib.jquery (4.1-5) ... Setting up libopenmpi-dev:amd64 (5.0.6-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libhdf5-openmpi-dev (1.10.10+repack-5+b1) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-1) ... Setting up mpi-default-dev (1.17) ... Setting up libscalapack-mpi-dev:amd64 (2.2.1-7+b1) ... Setting up libmumps-dev:amd64 (5.7.3-3+b1) ... Setting up libscotch-dev (7.0.5-2+b1) ... Setting up libparpack2-dev:amd64 (3.9.1-1.2+b1) ... Setting up libhypre-dev:amd64 (2.32.0-2+b1) ... Setting up libptscotch-dev (7.0.5-2+b1) ... Setting up libboost-mpi1.83-dev (1.83.0-3.2+b2) ... Setting up libboost-mpi-dev (1.83.0.2+b2) ... Setting up libhdf5-mpi-dev (1.10.10+repack-5+b1) ... Setting up libpetsc3.22-dev-common (3.22.1+dfsg1-2) ... Setting up libpetsc-real3.22-dev:amd64 (3.22.1+dfsg1-2) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.22.1 to provide /usr/lib/x86_64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real to provide /usr/lib/petscdir/3.22 (petsc3.22) in auto mode Setting up libpetsc-complex3.22-dev:amd64 (3.22.1+dfsg1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_complex.so.3.22.1 to provide /usr/lib/x86_64-linux-gnu/libpetsc_complex.so (libpetsc_complex.so) in auto mode Setting up libslepc-complex3.22-dev (3.22.1+dfsg1-2) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_complex.so.3.22.1 to provide /usr/lib/x86_64-linux-gnu/libslepc_complex.so (libslepc_complex.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex to provide /usr/lib/slepcdir/3.22 (slepc3.22) in auto mode Setting up libpetsc-real-dev (3.22.1+dfsg1-2) ... Setting up libpetsc-complex-dev (3.22.1+dfsg1-2) ... Setting up libslepc-real3.22-dev (3.22.1+dfsg1-2) ... update-alternatives: using /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.22.1 to provide /usr/lib/x86_64-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/3.22 (slepc3.22) in auto mode Setting up libslepc-real-dev (3.22.1+dfsg1-2) ... Setting up libslepc-complex-dev (3.22.1+dfsg1-2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/fenics-dolfinx-0.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fenics-dolfinx_0.9.0-5_source.changes dpkg-buildpackage: info: source package fenics-dolfinx dpkg-buildpackage: info: source version 1:0.9.0-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake --with python3,sphinxdoc debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_auto_clean --builddir=/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real dh_auto_clean --builddir=/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex rm -rf python/build-real python/build-complex rm -rf debian/tmp-real debian/tmp-complex rm -rf python/fenics_dolfinx.egg-info rm -rf python/doc/build python/doc/source/generated rm -rf cpp/doc/latex cpp/doc/html cpp/doc/xml rm -rf /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake --with python3,sphinxdoc dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real dh_auto_configure --builddir=/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real -D/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -- -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING="--oversubscribe" -D CMAKE_CXX_FLAGS:STRING="-fpermissive" -D DOLFINX_EXTRA_CXX_FLAGS:STRING="-g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" -D DEBIAN_VERSION_ID=debian_1:0.9.0-5 cd obj-x86_64-linux-gnu-real && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING=--oversubscribe -D CMAKE_CXX_FLAGS:STRING=-fpermissive -D "DOLFINX_EXTRA_CXX_FLAGS:STRING=-g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" -D DEBIAN_VERSION_ID=debian_1:0.9.0-5 ../cpp -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found suitable version "3.1", minimum required is "3") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found suitable version "3.1", minimum required is "3") -- Found MPI: TRUE (found suitable version "3.1", minimum required is "3") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Checking for Basix hints with /usr/bin/python3 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found Python3: /usr/bin/python3 (found version "3.12.7") found components: Interpreter -- Asking Python module FFCx for location of ufcx.h... -- Found UFCx: /usr/lib/python3/dist-packages/ffcx/codegeneration (found suitable version "0.9.0", minimum required is "0.9") -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.1", minimum required is "2.8.1") found components: CXX -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'OPTIONAL;PETSc>=3.15;petsc>=3.15' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Found PETSc version 3.22.1, prefix: /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real -- Checking for one of the modules 'slepc>=3.15' -- Found SLEPc version 3.22.1, prefix: /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real -- Could NOT find SCOTCH (missing: SCOTCH_DIR) -- Checking for package 'SCOTCH-PT' -- Found SCOTCH (version 7.0.5) -- Performing test SCOTCH_TEST_RUNS -- Performing test SCOTCH_TEST_RUNS - Success -- Found SCOTCH: /usr/lib/x86_64-linux-gnu/libptscotch.so;/usr/lib/x86_64-linux-gnu/libscotch.so;/usr/lib/x86_64-linux-gnu/libptscotcherr.so -- Checking for package 'KaHIP' -- KaHIP could not be found/configured. (missing: KAHIP_INCLUDE_DIRS KAHIP_LIBRARIES KAHIP_TEST_RUNS) -- The following features have been enabled: * BUILD_SHARED_LIBS, Build DOLFINx with shared libraries. * DOLFINX_BASIX_PYTHON, Ask Python basix module for hint where to find Basix C++ install using CONFIG mode. * DOLFINX_UFCX_PYTHON, Ask Python FFCx module where to find ufcx.h header using MODULE mode. Otherwise use CONFIG mode. -- The following OPTIONAL packages have been found: * ADIOS2 (required version >= 2.8.1), Adaptable Input/Output (I/O) System., IO, including in parallel -- The following RECOMMENDED packages have been found: * PETSc, Portable, Extensible Toolkit for Scientific Computation, Linear and nonlinear solvers * SLEPc, Scalable Library for Eigenvalue Problem Computations, Eigenvalue computation -- The following REQUIRED packages have been found: * MPI (required version >= 3) * Threads * spdlog * pugixml * boost_headers (required version == 1.83.0) * boost_timer (required version == 1.83.0) * Boost (required version >= 1.70), Boost C++ libraries, * Basix (required version >= 0.8) * HDF5, Hierarchical Data Format 5 (HDF5), * Python3 * UFCx (required version >= 0.9), Interface for form-compilers (part of FFCx), * PkgConfig * SCOTCH, Programs and libraries for graph, mesh and hypergraph partitioning, Parallel graph partitioning -- The following features have been disabled: * INSTALL_RUNTIME_DEPENDENCIES, Include runtime dependencies in install (Windows-only) * DOLFINX_SKIP_BUILD_TESTS, Skip build tests for testing usability of dependency packages. * CMAKE_INSTALL_RPATH_USE_LINK_PATH, Add paths to linker search and installed rpath. -- The following OPTIONAL packages have not been found: * KaHIP, A family of graph partitioning programs, Parallel graph partitioning -- Configuring done (23.6s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY DOLFINX_ENABLE_DOCS DOLFINX_ENABLE_HDF5 DOLFINX_ENABLE_MPI DOLFINX_ENABLE_TRILINOS DOLFINX_EXTRA_CXX_FLAGS FETCHCONTENT_FULLY_DISCONNECTED MPIEXEC_PARAMS -- Build files have been written to: /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex dh_auto_configure --builddir=/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex -D/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -- -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING="--oversubscribe" -D CMAKE_CXX_FLAGS:STRING="-fpermissive" -D DOLFINX_EXTRA_CXX_FLAGS:STRING="-g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" -D DEBIAN_VERSION_ID=debian_1:0.9.0-5 cd obj-x86_64-linux-gnu-complex && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING=--oversubscribe -D CMAKE_CXX_FLAGS:STRING=-fpermissive -D "DOLFINX_EXTRA_CXX_FLAGS:STRING=-g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" -D DEBIAN_VERSION_ID=debian_1:0.9.0-5 ../cpp -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found suitable version "3.1", minimum required is "3") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found suitable version "3.1", minimum required is "3") -- Found MPI: TRUE (found suitable version "3.1", minimum required is "3") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Checking for Basix hints with /usr/bin/python3 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found Python3: /usr/bin/python3 (found version "3.12.7") found components: Interpreter -- Asking Python module FFCx for location of ufcx.h... -- Found UFCx: /usr/lib/python3/dist-packages/ffcx/codegeneration (found suitable version "0.9.0", minimum required is "0.9") -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.1", minimum required is "2.8.1") found components: CXX -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'OPTIONAL;PETSc>=3.15;petsc>=3.15' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - found -- Found PETSc version 3.22.1, prefix: /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex -- Checking for one of the modules 'slepc>=3.15' -- Found SLEPc version 3.22.1, prefix: /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex -- Could NOT find SCOTCH (missing: SCOTCH_DIR) -- Checking for package 'SCOTCH-PT' -- Found SCOTCH (version 7.0.5) -- Performing test SCOTCH_TEST_RUNS -- Performing test SCOTCH_TEST_RUNS - Success -- Found SCOTCH: /usr/lib/x86_64-linux-gnu/libptscotch.so;/usr/lib/x86_64-linux-gnu/libscotch.so;/usr/lib/x86_64-linux-gnu/libptscotcherr.so -- Checking for package 'KaHIP' -- KaHIP could not be found/configured. (missing: KAHIP_INCLUDE_DIRS KAHIP_LIBRARIES KAHIP_TEST_RUNS) -- The following features have been enabled: * BUILD_SHARED_LIBS, Build DOLFINx with shared libraries. * DOLFINX_BASIX_PYTHON, Ask Python basix module for hint where to find Basix C++ install using CONFIG mode. * DOLFINX_UFCX_PYTHON, Ask Python FFCx module where to find ufcx.h header using MODULE mode. Otherwise use CONFIG mode. -- The following OPTIONAL packages have been found: * ADIOS2 (required version >= 2.8.1), Adaptable Input/Output (I/O) System., IO, including in parallel -- The following RECOMMENDED packages have been found: * PETSc, Portable, Extensible Toolkit for Scientific Computation, Linear and nonlinear solvers * SLEPc, Scalable Library for Eigenvalue Problem Computations, Eigenvalue computation -- The following REQUIRED packages have been found: * MPI (required version >= 3) * Threads * spdlog * pugixml * boost_headers (required version == 1.83.0) * boost_timer (required version == 1.83.0) * Boost (required version >= 1.70), Boost C++ libraries, * Basix (required version >= 0.8) * HDF5, Hierarchical Data Format 5 (HDF5), * Python3 * UFCx (required version >= 0.9), Interface for form-compilers (part of FFCx), * PkgConfig * SCOTCH, Programs and libraries for graph, mesh and hypergraph partitioning, Parallel graph partitioning -- The following features have been disabled: * INSTALL_RUNTIME_DEPENDENCIES, Include runtime dependencies in install (Windows-only) * DOLFINX_SKIP_BUILD_TESTS, Skip build tests for testing usability of dependency packages. * CMAKE_INSTALL_RPATH_USE_LINK_PATH, Add paths to linker search and installed rpath. -- The following OPTIONAL packages have not been found: * KaHIP, A family of graph partitioning programs, Parallel graph partitioning -- Configuring done (24.5s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY DOLFINX_ENABLE_DOCS DOLFINX_ENABLE_HDF5 DOLFINX_ENABLE_MPI DOLFINX_ENABLE_TRILINOS DOLFINX_EXTRA_CXX_FLAGS FETCHCONTENT_FULLY_DISCONNECTED MPIEXEC_PARAMS -- Build files have been written to: /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real dh_auto_build --builddir=/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real cd obj-x86_64-linux-gnu-real && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -B/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/CMakeFiles /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real' make -f dolfinx/CMakeFiles/dolfinx.dir/build.make dolfinx/CMakeFiles/dolfinx.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real' cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx/CMakeFiles/dolfinx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real' make -f dolfinx/CMakeFiles/dolfinx.dir/build.make dolfinx/CMakeFiles/dolfinx.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real' [ 2%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o [ 4%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/defines.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o -MF CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o.d -o CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/IndexMap.cpp cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -DDOLFINX_GIT_COMMIT_HASH=\"debian_1:0.9.0-5\" -DUFCX_SIGNATURE=\"475c28073ccb3c02130118a9af65e8309bf276c3\" -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/defines.cpp.o -MF CMakeFiles/dolfinx.dir/common/defines.cpp.o.d -o CMakeFiles/dolfinx.dir/common/defines.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/defines.cpp [ 6%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/log.cpp.o [ 9%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/MPI.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/MPI.cpp.o -MF CMakeFiles/dolfinx.dir/common/MPI.cpp.o.d -o CMakeFiles/dolfinx.dir/common/MPI.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/MPI.cpp cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/log.cpp.o -MF CMakeFiles/dolfinx.dir/common/log.cpp.o.d -o CMakeFiles/dolfinx.dir/common/log.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/log.cpp [ 11%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Table.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/Table.cpp.o -MF CMakeFiles/dolfinx.dir/common/Table.cpp.o.d -o CMakeFiles/dolfinx.dir/common/Table.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Table.cpp [ 13%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Timer.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp 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/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/petsc.cpp.o -MF CMakeFiles/dolfinx.dir/fem/petsc.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/petsc.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/petsc.cpp [ 39%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o -MF CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/sparsitybuild.cpp [ 41%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/utils.cpp.o cd 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/usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/graph/ordering.cpp.o -MF CMakeFiles/dolfinx.dir/graph/ordering.cpp.o.d -o CMakeFiles/dolfinx.dir/graph/ordering.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/ordering.cpp [ 48%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/graph/partition.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED 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dolfinx/CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o -MF CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o.d -o CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/ADIOS2Writers.cpp [ 53%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/cells.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/cells.cpp.o -MF CMakeFiles/dolfinx.dir/io/cells.cpp.o.d -o CMakeFiles/dolfinx.dir/io/cells.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/cells.cpp [ 55%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o -MF CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o.d -o CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/HDF5Interface.cpp [ 58%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED 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dolfinx/CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o -MF CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o.d -o CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/vtk_utils.cpp [ 62%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o -MF CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o.d -o CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/XDMFFile.cpp [ 65%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o -MF CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o.d -o CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_function.cpp [ 67%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED 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dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o -MF CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o.d -o CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_utils.cpp [ 72%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi 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Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time 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/usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/cell_types.cpp [ 83%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/graphbuild.cpp [ 86%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI 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CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/permutationcomputation.cpp [ 88%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/topologycomputation.cpp [ 90%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/utils.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/utils.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/utils.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/utils.cpp [ 93%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o -MF CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o.d -o CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/nls/NewtonSolver.cpp [ 95%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o -MF CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o.d -o CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/plaza.cpp [ 97%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/refinement/utils.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/refinement/utils.cpp.o -MF CMakeFiles/dolfinx.dir/refinement/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/refinement/utils.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/utils.cpp [100%] Linking CXX shared library libdolfinx_real.so cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfinx.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -fpermissive -O2 -g -DNDEBUG -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/dolfinx.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libdolfinx_real.so.0.9 -o libdolfinx_real.so.0.9.0 CMakeFiles/dolfinx.dir/common/defines.cpp.o CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o CMakeFiles/dolfinx.dir/common/log.cpp.o CMakeFiles/dolfinx.dir/common/MPI.cpp.o CMakeFiles/dolfinx.dir/common/Table.cpp.o CMakeFiles/dolfinx.dir/common/Timer.cpp.o CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o CMakeFiles/dolfinx.dir/common/timing.cpp.o CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o CMakeFiles/dolfinx.dir/fem/FiniteElement.cpp.o CMakeFiles/dolfinx.dir/fem/dofmapbuilder.cpp.o CMakeFiles/dolfinx.dir/fem/petsc.cpp.o CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o CMakeFiles/dolfinx.dir/fem/utils.cpp.o CMakeFiles/dolfinx.dir/graph/ordering.cpp.o CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o CMakeFiles/dolfinx.dir/graph/partition.cpp.o CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o CMakeFiles/dolfinx.dir/io/cells.cpp.o CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o CMakeFiles/dolfinx.dir/la/petsc.cpp.o CMakeFiles/dolfinx.dir/la/slepc.cpp.o CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o CMakeFiles/dolfinx.dir/mesh/utils.cpp.o CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o CMakeFiles/dolfinx.dir/refinement/utils.cpp.o /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/libptscotch.so /usr/lib/x86_64-linux-gnu/libscotch.so /usr/lib/x86_64-linux-gnu/libptscotcherr.so cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/cmake -E cmake_symlink_library libdolfinx_real.so.0.9.0 libdolfinx_real.so.0.9 libdolfinx_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real' [100%] Built target dolfinx make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real' PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex dh_auto_build --builddir=/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex cd obj-x86_64-linux-gnu-complex && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -B/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/CMakeFiles /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' make -f dolfinx/CMakeFiles/dolfinx.dir/build.make dolfinx/CMakeFiles/dolfinx.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx/CMakeFiles/dolfinx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' make -f dolfinx/CMakeFiles/dolfinx.dir/build.make dolfinx/CMakeFiles/dolfinx.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' [ 2%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/defines.cpp.o [ 4%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -DDOLFINX_GIT_COMMIT_HASH=\"debian_1:0.9.0-5\" -DUFCX_SIGNATURE=\"475c28073ccb3c02130118a9af65e8309bf276c3\" -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/defines.cpp.o -MF CMakeFiles/dolfinx.dir/common/defines.cpp.o.d -o CMakeFiles/dolfinx.dir/common/defines.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/defines.cpp cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o -MF CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o.d -o CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/IndexMap.cpp [ 6%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/log.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/log.cpp.o -MF CMakeFiles/dolfinx.dir/common/log.cpp.o.d -o CMakeFiles/dolfinx.dir/common/log.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/log.cpp [ 11%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/MPI.cpp.o [ 11%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Table.cpp.o [ 13%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Timer.cpp.o [ 16%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/MPI.cpp.o -MF CMakeFiles/dolfinx.dir/common/MPI.cpp.o.d -o CMakeFiles/dolfinx.dir/common/MPI.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/MPI.cpp [ 18%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/Table.cpp.o -MF CMakeFiles/dolfinx.dir/common/Table.cpp.o.d -o CMakeFiles/dolfinx.dir/common/Table.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Table.cpp cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/Timer.cpp.o -MF CMakeFiles/dolfinx.dir/common/Timer.cpp.o.d -o CMakeFiles/dolfinx.dir/common/Timer.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Timer.cpp [ 20%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/timing.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o -MF CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o.d -o CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/TimeLogger.cpp cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o -MF CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o.d -o CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/TimeLogManager.cpp cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/timing.cpp.o -MF CMakeFiles/dolfinx.dir/common/timing.cpp.o.d -o CMakeFiles/dolfinx.dir/common/timing.cpp.o -c 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dolfinx/CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o -MF CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/sparsitybuild.cpp cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem 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/usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/utils.cpp.o -MF CMakeFiles/dolfinx.dir/fem/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/utils.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/utils.cpp [ 44%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/graph/ordering.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 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dolfinx/CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o -MF CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o.d -o CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/partitioners.cpp [ 48%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/graph/partition.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem 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-I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o -MF CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o.d -o CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_mesh.cpp [ 69%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI 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/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_utils.cpp [ 72%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include 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-Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/la/slepc.cpp.o -MF CMakeFiles/dolfinx.dir/la/slepc.cpp.o.d -o CMakeFiles/dolfinx.dir/la/slepc.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/slepc.cpp [ 79%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o.d -o 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-isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/graphbuild.cpp [ 86%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC 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/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/permutationcomputation.cpp [ 88%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/topologycomputation.cpp [ 90%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/utils.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/utils.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/utils.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/utils.cpp [ 93%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED 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CXX object dolfinx/CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o -MF CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o.d -o CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/plaza.cpp [ 97%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/refinement/utils.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/refinement/utils.cpp.o -MF CMakeFiles/dolfinx.dir/refinement/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/refinement/utils.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/utils.cpp [100%] Linking CXX shared library libdolfinx_complex.so cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfinx.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -fpermissive -O2 -g -DNDEBUG -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/dolfinx.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libdolfinx_complex.so.0.9 -o libdolfinx_complex.so.0.9.0 CMakeFiles/dolfinx.dir/common/defines.cpp.o CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o CMakeFiles/dolfinx.dir/common/log.cpp.o CMakeFiles/dolfinx.dir/common/MPI.cpp.o CMakeFiles/dolfinx.dir/common/Table.cpp.o CMakeFiles/dolfinx.dir/common/Timer.cpp.o CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o CMakeFiles/dolfinx.dir/common/timing.cpp.o CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o CMakeFiles/dolfinx.dir/fem/FiniteElement.cpp.o CMakeFiles/dolfinx.dir/fem/dofmapbuilder.cpp.o CMakeFiles/dolfinx.dir/fem/petsc.cpp.o CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o CMakeFiles/dolfinx.dir/fem/utils.cpp.o CMakeFiles/dolfinx.dir/graph/ordering.cpp.o CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o CMakeFiles/dolfinx.dir/graph/partition.cpp.o CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o CMakeFiles/dolfinx.dir/io/cells.cpp.o CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o CMakeFiles/dolfinx.dir/la/petsc.cpp.o CMakeFiles/dolfinx.dir/la/slepc.cpp.o CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o CMakeFiles/dolfinx.dir/mesh/utils.cpp.o CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o CMakeFiles/dolfinx.dir/refinement/utils.cpp.o /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/libpetsc_complex.so /usr/lib/x86_64-linux-gnu/libptscotch.so /usr/lib/x86_64-linux-gnu/libscotch.so /usr/lib/x86_64-linux-gnu/libptscotcherr.so cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/cmake -E cmake_symlink_library libdolfinx_complex.so.0.9.0 libdolfinx_complex.so.0.9 libdolfinx_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' [100%] Built target dolfinx make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' echo "Tests must be run after installation" Tests must be run after installation make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_auto_install --builddir=/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real --destdir=debian/tmp-real cd obj-x86_64-linux-gnu-real && make -j20 install DESTDIR=/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -B/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9.0 -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9 -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets-relwithdebinfo.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/defines.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/dolfinx_common.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/dolfinx_doc.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/IndexMap.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/log.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/sort.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/types.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/math.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/MPI.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/Scatterer.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/Table.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/Timer.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/TimeLogger.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/TimeLogManager.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/timing.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/Constant.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/CoordinateElement.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/DirichletBC.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/DofMap.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/ElementDofLayout.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/Expression.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/FiniteElement.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/Form.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/Function.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/FunctionSpace.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/assembler.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/assemble_matrix_impl.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/assemble_scalar_impl.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/assemble_vector_impl.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/discreteoperators.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/dofmapbuilder.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/dolfinx_fem.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/interpolate.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/petsc.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/sparsitybuild.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/traits.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/geometry/BoundingBoxTree.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/geometry/gjk.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/geometry/dolfinx_geometry.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/geometry/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/graph/AdjacencyList.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/graph/dolfinx_graph.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/graph/ordering.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/graph/partitioners.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/graph/partition.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/io/dolfinx_io.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/io/ADIOS2Writers.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/io/cells.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/io/HDF5Interface.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/io/vtk_utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/io/VTKFile.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/io/XDMFFile.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/io/xdmf_function.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/io/xdmf_mesh.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/io/xdmf_utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/la/dolfinx_la.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/la/MatrixCSR.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/la/matrix_csr_impl.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/la/SparsityPattern.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/la/Vector.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/la/petsc.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/la/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/la/slepc.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/mesh/dolfinx_mesh.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/mesh/Mesh.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/mesh/Geometry.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/mesh/Topology.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/mesh/MeshTags.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/mesh/cell_types.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/mesh/generation.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/mesh/graphbuild.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/mesh/permutationcomputation.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/mesh/topologycomputation.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/mesh/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/nls/dolfinx_nls.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/nls/NewtonSolver.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/refinement/dolfinx_refinement.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/refinement/interval.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/refinement/plaza.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/refinement/refine.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/refinement/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/refinement/option.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/version.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfig.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfigVersion.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx_real.pc -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf ---------------------------------------------------------------------------- DOLFINx has now been installed in /usr and demo programs have been installed in /usr/share/dolfinx/demo Don't forget to update your environment variables. This can be done easily using the helper file 'dolfinx.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf ---------------------------------------------------------------------------- make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real' cp COPYING.LESSER python for build in real; do \ PATH=/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-${build}/usr/bin:$PATH \ PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-${build} SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-${build} \ CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-${build}/usr/include" \ VERBOSE=1 \ ADIOS2_ALWAYS_USE_MPI=1 \ PUSIMP_EXPECT_DOLFINX_IN_CWD=1 \ pybuild --dir=/build/reproducible-path/fenics-dolfinx-0.9.0/python --dest-dir=/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-${build} --system=pyproject --name=dolfinx-${build} --test-pytest; \ done I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.13_dolfinx-real * Building wheel... *** scikit-build-core 0.10.7 using CMake 3.31.1 (wheel) *** Configuring CMake... loading initial cache file /tmp/tmpvwpr0uto/build/CMakeInit.txt Re-run cmake no build system arguments -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python: /usr/bin/python3.13 (found version "3.13.0") found components: Interpreter Development Development.Module Development.Embed -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Checking for Basix hints with /usr/bin/python3.13 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.1", minimum required is "2.8.1") found components: CXX -- Found DOLFINx at /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx -- Found petsc4py include directory at /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -- Found mpi4py include directory at /usr/lib/python3/dist-packages/mpi4py/include -- Configuring done (14.1s) -- Generating done (0.0s) -- Build files have been written to: /tmp/tmpvwpr0uto/build *** Building project with Unix Makefiles... Change Dir: '/tmp/tmpvwpr0uto/build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile gmake[2]: Entering directory '/tmp/tmpvwpr0uto/build' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.9.0/python -B/tmp/tmpvwpr0uto/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /tmp/tmpvwpr0uto/build/CMakeFiles /tmp/tmpvwpr0uto/build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[3]: Entering directory '/tmp/tmpvwpr0uto/build' /usr/bin/gmake -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/depend gmake[4]: Entering directory '/tmp/tmpvwpr0uto/build' cd /tmp/tmpvwpr0uto/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/python /build/reproducible-path/fenics-dolfinx-0.9.0/python /tmp/tmpvwpr0uto/build /tmp/tmpvwpr0uto/build /tmp/tmpvwpr0uto/build/CMakeFiles/nanobind-static.dir/DependInfo.cmake "--color=" gmake[4]: Leaving directory '/tmp/tmpvwpr0uto/build' /usr/bin/gmake -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/build gmake[4]: Entering directory '/tmp/tmpvwpr0uto/build' [ 4%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -c /usr/share/nanobind/src/nb_internals.cpp [ 8%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o -c /usr/share/nanobind/src/nb_func.cpp [ 12%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o -c /usr/share/nanobind/src/nb_type.cpp [ 16%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o -c /usr/share/nanobind/src/nb_enum.cpp [ 20%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o -c /usr/share/nanobind/src/nb_ndarray.cpp [ 25%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o -c /usr/share/nanobind/src/nb_static_property.cpp [ 29%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o -c /usr/share/nanobind/src/common.cpp [ 33%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o -c /usr/share/nanobind/src/error.cpp [ 37%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o -c /usr/share/nanobind/src/trampoline.cpp [ 41%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o -c /usr/share/nanobind/src/implicit.cpp [ 45%] Linking CXX static library libnanobind-static.a /usr/bin/cmake -P CMakeFiles/nanobind-static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/nanobind-static.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libnanobind-static.a "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o" /usr/bin/x86_64-linux-gnu-ranlib libnanobind-static.a gmake[4]: Leaving directory '/tmp/tmpvwpr0uto/build' [ 45%] Built target nanobind-static /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/depend gmake[4]: Entering directory '/tmp/tmpvwpr0uto/build' cd /tmp/tmpvwpr0uto/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/python /build/reproducible-path/fenics-dolfinx-0.9.0/python /tmp/tmpvwpr0uto/build /tmp/tmpvwpr0uto/build /tmp/tmpvwpr0uto/build/CMakeFiles/cpp.dir/DependInfo.cmake "--color=" gmake[4]: Leaving directory '/tmp/tmpvwpr0uto/build' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/build gmake[4]: Entering directory '/tmp/tmpvwpr0uto/build' [ 50%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PETSC4PY -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Dcpp_EXPORTS -Dcxx_std_20 -I/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -I/usr/include/python3.13 -I/usr/share/nanobind/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -O3 -DNDEBUG -std=gnu++20 -fPIC -fvisibility=hidden -fno-stack-protector -ffunction-sections -fdata-sections -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/python/dolfinx/wrappers/dolfinx.cpp [ 54%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/assemble.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PETSC4PY -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Dcpp_EXPORTS -Dcxx_std_20 -I/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -I/usr/include/python3.13 -I/usr/share/nanobind/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem 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[100%] =============================== warnings summary =============================== test/unit/fem/test_expression.py::test_facet_expression[complex64] test/unit/fem/test_expression.py::test_facet_expression[complex128] /usr/lib/python3/dist-packages/ffcx/element_interface.py:47: ComplexWarning: Casting complex values to real discards the imaginary part return np.asarray( test/unit/fem/test_function.py::test_cffi_expression[float32-float] test/unit/fem/test_function.py::test_cffi_expression[float64-double] /usr/lib/python3/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.13_dolfinx-real/build/../README.md' cannot be found for path in _filter_existing_files(_filepaths) test/unit/fem/test_function.py::test_cffi_expression[float32-float] test/unit/fem/test_function.py::test_cffi_expression[float64-double] /usr/lib/python3/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.13_dolfinx-real/build/COPYING.LESSER' cannot be found for path in _filter_existing_files(_filepaths) test/unit/fem/test_function.py::test_cffi_expression[float32-float] /usr/lib/python3/dist-packages/setuptools/command/easy_install.py:41: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================= slowest 20 durations ============================= 76.08s call test/unit/fem/test_assembler.py::TestPETScAssemblers::test_symmetry_interior_facet_assembly[mesh1] 35.50s call test/unit/la/test_nullspace.py::test_nullspace_check[2-3-complex128] 29.81s call test/unit/la/test_nullspace.py::test_nullspace_check[2-3-complex64] 25.74s call test/unit/la/test_nullspace.py::test_nullspace_check[2-3-float32] 24.61s call test/unit/fem/test_fem_pipeline.py::test_NC_hex[3-NCF-CellType.hexahedron] 24.50s call test/unit/fem/test_petsc_nonlinear_assembler.py::TestNLSPETSc::test_assembly_solve_taylor_hood_nl[mesh2] 23.60s call test/unit/fem/test_element_integrals.py::test_facet_normals[complex128-CellType.hexahedron] 21.55s call test/unit/fem/test_petsc_nonlinear_assembler.py::TestNLSPETSc::test_assembly_solve_block_nl 21.50s call test/unit/fem/test_petsc_nonlinear_assembler.py::TestNLSPETSc::test_assembly_solve_taylor_hood_nl[mesh0] 19.25s call test/unit/la/test_nullspace.py::test_nullspace_check[1-3-complex128] 18.06s call test/unit/la/test_nullspace.py::test_nullspace_check[1-3-complex64] 17.95s call test/unit/fem/test_assembler.py::TestPETScAssemblers::test_assembly_solve_taylor_hood[mesh2] 17.60s call test/unit/la/test_nullspace.py::test_nullspace_check[2-3-float64] 17.60s call test/unit/fem/test_assembler.py::TestPETScAssemblers::test_symmetry_interior_facet_assembly[mesh0] 17.24s call test/unit/fem/test_element_integrals.py::test_plus_minus[float32-CellType.hexahedron-Lagrange] 16.38s call test/unit/fem/test_element_integrals.py::test_plus_minus[float32-CellType.hexahedron-DG] 15.05s call test/unit/fem/test_element_integrals.py::test_facet_normals[float32-CellType.hexahedron] 14.55s call test/unit/la/test_nullspace.py::test_nullspace_check[1-3-float64] 14.05s call test/unit/fem/test_fem_pipeline.py::test_DPC_hex[2-DPC-CellType.hexahedron] 13.77s call test/unit/fem/test_dof_permuting.py::test_integral[2-hexahedron-NCE] = 2517 passed, 96 skipped, 27 xfailed, 5 xpassed, 7 warnings in 5323.47s (1:28:43) = I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.12_dolfinx-real * Building wheel... *** scikit-build-core 0.10.7 using CMake 3.31.1 (wheel) *** Configuring CMake... loading initial cache file /tmp/tmp_f1z5qio/build/CMakeInit.txt Re-run cmake no build system arguments -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python: /usr/bin/python3.12 (found version "3.12.7") found components: Interpreter Development Development.Module Development.Embed -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Checking for Basix hints with /usr/bin/python3.12 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.1", minimum required is "2.8.1") found components: CXX -- Found DOLFINx at /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx -- Found petsc4py include directory at /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -- Found mpi4py include directory at /usr/lib/python3/dist-packages/mpi4py/include -- Configuring done (17.8s) -- Generating done (0.4s) -- Build files have been written to: /tmp/tmp_f1z5qio/build *** Building project with Unix Makefiles... 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[ 11%] ........................................................................ [ 14%] ............................................. [ 15%] test/unit/fem/test_dof_coordinates.py ................ [ 16%] test/unit/fem/test_dof_permuting.py .................................... [ 17%] ........................................................................ [ 20%] ..................................ssssss [ 22%] test/unit/fem/test_dofmap.py ss.ss.ssss......... [ 22%] test/unit/fem/test_element_integrals.py ................................ [ 24%] ........................................................................ [ 26%] ........................................................................ [ 29%] ........................................................................ [ 32%] ................................ssssssssssssssss........................ [ 34%] [ 34%] test/unit/fem/test_expression.py ............................. [ 36%] test/unit/fem/test_fem_pipeline.py ...........s.................s....... [ 37%] ..........s.s.......s.............................s..................... [ 40%] .s.............................. [ 41%] test/unit/fem/test_forms.py .. [ 41%] test/unit/fem/test_function.py ............ [ 41%] test/unit/fem/test_function_space.py ............. [ 42%] test/unit/fem/test_ghost_mesh_assembly.py ..X..X [ 42%] test/unit/fem/test_interpolation.py .................................... [ 44%] ........................................................................ [ 46%] ........................................................................ [ 49%] ...s............................ [ 50%] test/unit/fem/test_mixed_element.py ...................... [ 51%] test/unit/fem/test_mixed_mesh_dofmap.py .. [ 51%] test/unit/fem/test_petsc_discrete_operators.py ......................... [ 52%] ........................................................................ [ 55%] ................ [ 55%] test/unit/fem/test_petsc_nonlinear_assembler.py ...... [ 56%] test/unit/fem/test_petsc_solver_wrappers.py .. [ 56%] test/unit/fem/test_quadrature_elements.py .............................. [ 57%] ...... [ 57%] test/unit/fem/test_special_functions.py ... [ 57%] test/unit/fem/test_symmetric_tensor.py ........ [ 57%] test/unit/fem/test_symmetry.py ......................................... [ 59%] ....................................................... [ 61%] test/unit/fem/test_vector_assemble.py .. [ 61%] test/unit/fem/test_vector_function.py .......... [ 62%] test/unit/geometry/test_bounding_box_tree.py ........................... [ 63%] ................................. [ 64%] test/unit/geometry/test_gjk.py ......................................... [ 65%] ...................... [ 66%] test/unit/graph/test_adjacencylist.py .. [ 66%] test/unit/io/test_adios2.py ............................................ [ 68%] .....ssssssss [ 68%] test/unit/io/test_vtk.py ....................... [ 69%] test/unit/io/test_xdmf_function.py ..................................... [ 71%] ...........................................s [ 72%] test/unit/io/test_xdmf_mesh.py ..........ss............................. [ 74%] ................................... [ 75%] test/unit/io/test_xdmf_meshdata.py .. [ 75%] test/unit/io/test_xdmf_meshtags.py .... [ 75%] test/unit/la/test_matrix_csr.py ............................ [ 77%] test/unit/la/test_matrix_vector.py ............xxx....xxx....xxxxxxxxxx [ 78%] test/unit/la/test_nullspace.py ................................ [ 79%] test/unit/la/test_sparsity_pattern.py . [ 79%] test/unit/la/test_vector_scatter.py ........... [ 80%] test/unit/mesh/test_cell.py ... [ 80%] test/unit/mesh/test_create_mixed_mesh.py . [ 80%] test/unit/mesh/test_dual_graph.py . [ 80%] test/unit/mesh/test_face.py s. [ 80%] test/unit/mesh/test_ghost_mesh.py X..X...X [ 80%] test/unit/mesh/test_higher_order_mesh.py ............................... [ 81%] ....................x...x..........xx..xx.......ssssssssssssssssssssssss [ 84%] .................. [ 85%] test/unit/mesh/test_manifold_point_search.py . [ 85%] test/unit/mesh/test_mesh.py ....................ss....s................. [ 86%] ........................................................................ [ 89%] ........................................................................ [ 92%] ...................................................................... [ 95%] test/unit/mesh/test_mesh_partitioners.py ..ss..ss..ss..ss..ss..ss....... [ 96%] . [ 96%] test/unit/mesh/test_meshtags.py .... [ 96%] test/unit/mesh/test_mixed_topology.py .... [ 96%] test/unit/nls/test_newton.py ... [ 96%] test/unit/refinement/test_interval.py .................................. [ 97%] ...................................... [ 99%] test/unit/refinement/test_refinement.py ................. [100%] =============================== warnings summary =============================== test/unit/fem/test_expression.py::test_facet_expression[complex64] test/unit/fem/test_expression.py::test_facet_expression[complex128] /usr/lib/python3/dist-packages/ffcx/element_interface.py:47: ComplexWarning: Casting complex values to real discards the imaginary part return np.asarray( test/unit/fem/test_function.py::test_cffi_expression[float32-float] test/unit/fem/test_function.py::test_cffi_expression[float64-double] /usr/lib/python3/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.12_dolfinx-real/build/../README.md' cannot be found for path in _filter_existing_files(_filepaths) test/unit/fem/test_function.py::test_cffi_expression[float32-float] test/unit/fem/test_function.py::test_cffi_expression[float64-double] /usr/lib/python3/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.12_dolfinx-real/build/COPYING.LESSER' cannot be found for path in _filter_existing_files(_filepaths) test/unit/fem/test_function.py::test_cffi_expression[float32-float] /usr/lib/python3/dist-packages/setuptools/command/easy_install.py:41: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================= slowest 20 durations ============================= 72.76s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[2-DQ-CellType.hexahedron] 60.00s call test/unit/fem/test_assembler.py::TestPETScAssemblers::test_symmetry_interior_facet_assembly[mesh1] 59.85s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[1-DQ-CellType.hexahedron] 44.11s call test/unit/fem/test_element_integrals.py::test_facet_normals[float64-CellType.hexahedron] 43.43s call test/unit/fem/test_fem_pipeline.py::test_petsc_curl_curl_eigenvalue[1-N2curl] 41.28s call test/unit/fem/test_fem_pipeline.py::test_dP_simplex[3-DG-CellType.tetrahedron] 40.60s call test/unit/fem/test_fem_pipeline.py::test_BDM_N2curl_simplex_highest_order[3-BDM-CellType.tetrahedron] 39.98s call test/unit/fem/test_fem_pipeline.py::test_P_tp[4-Q-CellType.hexahedron] 38.30s call test/unit/fem/test_fem_pipeline.py::test_DPC_hex[2-DPC-CellType.hexahedron] 38.06s call test/unit/la/test_nullspace.py::test_nullspace_check[2-3-complex64] 35.51s call test/unit/fem/test_fem_pipeline.py::test_biharmonic[HHJ-float64] 33.69s call test/unit/fem/test_element_integrals.py::test_facet_normals[float32-CellType.hexahedron] 33.55s call test/unit/la/test_nullspace.py::test_nullspace_check[2-3-float32] 33.15s call test/unit/fem/test_fem_pipeline.py::test_vector_P_tp[3-Q-CellType.hexahedron] 32.51s call test/unit/fem/test_element_integrals.py::test_facet_normals[complex64-CellType.hexahedron] 32.44s call test/unit/fem/test_fem_pipeline.py::test_BDM_N2curl_simplex_highest_order[3-N2curl-CellType.tetrahedron] 32.03s call test/unit/fem/test_fem_pipeline.py::test_biharmonic[HHJ-float32] 31.60s call test/unit/fem/test_petsc_nonlinear_assembler.py::TestNLSPETSc::test_assembly_solve_taylor_hood_nl[mesh2] 31.11s call test/unit/fem/test_fem_pipeline.py::test_dP_simplex[2-DG-CellType.tetrahedron] 30.05s call test/unit/fem/test_dof_permuting.py::test_integral[2-hexahedron-AAE] = 2517 passed, 96 skipped, 27 xfailed, 5 xpassed, 7 warnings in 9110.44s (2:31:50) = dh_auto_install -a --builddir=/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex --destdir=debian/tmp-complex cd obj-x86_64-linux-gnu-complex && make -j20 install DESTDIR=/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -B/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.9.0 -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.9 -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets-relwithdebinfo.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/defines.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/dolfinx_common.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/dolfinx_doc.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/IndexMap.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/log.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/sort.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/types.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/math.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/MPI.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/Scatterer.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/Table.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/Timer.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/TimeLogger.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/TimeLogManager.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/timing.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/Constant.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/CoordinateElement.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/DirichletBC.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/DofMap.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/ElementDofLayout.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/Expression.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/FiniteElement.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/Form.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/Function.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/FunctionSpace.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/assembler.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/assemble_matrix_impl.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/assemble_scalar_impl.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/assemble_vector_impl.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/discreteoperators.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/dofmapbuilder.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/dolfinx_fem.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/interpolate.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/petsc.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/sparsitybuild.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/traits.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/geometry/BoundingBoxTree.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/geometry/gjk.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/geometry/dolfinx_geometry.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/geometry/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/graph/AdjacencyList.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/graph/dolfinx_graph.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/graph/ordering.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/graph/partitioners.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/graph/partition.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/dolfinx_io.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/ADIOS2Writers.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/cells.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/HDF5Interface.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/vtk_utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/VTKFile.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/XDMFFile.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/xdmf_function.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/xdmf_mesh.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/xdmf_utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/dolfinx_la.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/MatrixCSR.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/matrix_csr_impl.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/SparsityPattern.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/Vector.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/petsc.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/slepc.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/dolfinx_mesh.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/Mesh.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/Geometry.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/Topology.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/MeshTags.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/cell_types.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/generation.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/graphbuild.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/permutationcomputation.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/topologycomputation.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/nls/dolfinx_nls.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/nls/NewtonSolver.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/refinement/dolfinx_refinement.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/refinement/interval.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/refinement/plaza.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/refinement/refine.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/refinement/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/refinement/option.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/version.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfig.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfigVersion.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx_complex.pc -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf ---------------------------------------------------------------------------- DOLFINx has now been installed in /usr and demo programs have been installed in /usr/share/dolfinx/demo Don't forget to update your environment variables. This can be done easily using the helper file 'dolfinx.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf ---------------------------------------------------------------------------- make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' cp COPYING.LESSER python dh_numpy3 -a for build in complex; do \ PATH=/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-${build}/usr/bin:$PATH \ PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-${build} SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-${build} \ CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-${build}/usr/include" \ VERBOSE=1 \ PUSIMP_EXPECT_DOLFINX_IN_CWD=1 \ pybuild --dir=/build/reproducible-path/fenics-dolfinx-0.9.0/python --dest-dir=/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-${build} --system=pyproject --name=dolfinx-${build} --test-pytest; \ done I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.13_dolfinx-complex * Building wheel... *** scikit-build-core 0.10.7 using CMake 3.31.1 (wheel) *** Configuring CMake... loading initial cache file /tmp/tmpln9gus70/build/CMakeInit.txt Re-run cmake no build system arguments -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python: /usr/bin/python3.13 (found version "3.13.0") found components: Interpreter Development Development.Module Development.Embed -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Checking for Basix hints with /usr/bin/python3.13 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.1", minimum required is "2.8.1") found components: CXX -- Found DOLFINx at /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx -- Found petsc4py include directory at /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -- Found mpi4py include directory at /usr/lib/python3/dist-packages/mpi4py/include -- Configuring done (28.2s) -- Generating done (0.5s) -- Build files have been written to: /tmp/tmpln9gus70/build *** Building project with Unix Makefiles... Change Dir: '/tmp/tmpln9gus70/build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile gmake[2]: Entering directory '/tmp/tmpln9gus70/build' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.9.0/python -B/tmp/tmpln9gus70/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /tmp/tmpln9gus70/build/CMakeFiles /tmp/tmpln9gus70/build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[3]: Entering directory '/tmp/tmpln9gus70/build' /usr/bin/gmake -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/depend gmake[4]: Entering directory '/tmp/tmpln9gus70/build' cd /tmp/tmpln9gus70/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/python /build/reproducible-path/fenics-dolfinx-0.9.0/python /tmp/tmpln9gus70/build /tmp/tmpln9gus70/build /tmp/tmpln9gus70/build/CMakeFiles/nanobind-static.dir/DependInfo.cmake "--color=" gmake[4]: Leaving directory '/tmp/tmpln9gus70/build' /usr/bin/gmake -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/build gmake[4]: Entering directory '/tmp/tmpln9gus70/build' [ 4%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -c /usr/share/nanobind/src/nb_internals.cpp [ 8%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o -c /usr/share/nanobind/src/nb_func.cpp [ 12%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o -c /usr/share/nanobind/src/nb_type.cpp [ 16%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o -c /usr/share/nanobind/src/nb_enum.cpp [ 20%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o -c /usr/share/nanobind/src/nb_ndarray.cpp [ 25%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o -c /usr/share/nanobind/src/nb_static_property.cpp [ 29%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o -c /usr/share/nanobind/src/common.cpp [ 33%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o -c /usr/share/nanobind/src/error.cpp [ 37%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o -c /usr/share/nanobind/src/trampoline.cpp [ 41%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o -c /usr/share/nanobind/src/implicit.cpp [ 45%] Linking CXX static library libnanobind-static.a /usr/bin/cmake -P CMakeFiles/nanobind-static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/nanobind-static.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libnanobind-static.a "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o" /usr/bin/x86_64-linux-gnu-ranlib libnanobind-static.a gmake[4]: Leaving directory '/tmp/tmpln9gus70/build' [ 45%] Built target nanobind-static /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/depend gmake[4]: Entering directory '/tmp/tmpln9gus70/build' cd /tmp/tmpln9gus70/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/python /build/reproducible-path/fenics-dolfinx-0.9.0/python /tmp/tmpln9gus70/build /tmp/tmpln9gus70/build /tmp/tmpln9gus70/build/CMakeFiles/cpp.dir/DependInfo.cmake "--color=" gmake[4]: Leaving directory '/tmp/tmpln9gus70/build' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/build gmake[4]: Entering directory '/tmp/tmpln9gus70/build' [ 50%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PETSC4PY -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Dcpp_EXPORTS -Dcxx_std_20 -I/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include 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/usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/libpetsc_complex.so gmake[4]: Leaving directory '/tmp/tmpln9gus70/build' [100%] Built target cpp gmake[3]: Leaving directory '/tmp/tmpln9gus70/build' /usr/bin/cmake -E cmake_progress_start /tmp/tmpln9gus70/build/CMakeFiles 0 gmake[2]: Leaving directory '/tmp/tmpln9gus70/build' *** Installing project into wheel... -- Install configuration: "Release" -- Installing: /tmp/tmpln9gus70/wheel/platlib/dolfinx/cpp.cpython-313-x86_64-linux-gnu.so -- Set non-toolchain portion of runtime path of "/tmp/tmpln9gus70/wheel/platlib/dolfinx/cpp.cpython-313-x86_64-linux-gnu.so" to "/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib" *** Making wheel... *** Created fenics_dolfinx-0.9.0-cp313-cp313-linux_x86_64.whl Successfully built fenics_dolfinx-0.9.0-cp313-cp313-linux_x86_64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir I: pybuild base:311: cd /build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.13_dolfinx-complex/build; python3.13 -m pytest --durations=20 -k "" ============================= test session starts ============================== platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.13_dolfinx-complex/build configfile: pyproject.toml plugins: typeguard-4.4.1 collected 2643 items / 2 skipped test/debian-only/test_pusimp.py .sss.. 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[ 11%] ........................................................................ [ 14%] ............................................. [ 15%] test/unit/fem/test_dof_coordinates.py ................ [ 16%] test/unit/fem/test_dof_permuting.py .................................... [ 17%] ........................................................................ [ 20%] ..................................ssssss [ 22%] test/unit/fem/test_dofmap.py ss.ss.ssss......... [ 22%] test/unit/fem/test_element_integrals.py ................................ [ 24%] ........................................................................ [ 26%] ........................................................................ [ 29%] ........................................................................ [ 32%] ................................ssssssssssssssss........................ [ 34%] [ 34%] test/unit/fem/test_expression.py ............................. 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[100%] =============================== warnings summary =============================== test/unit/fem/test_discrete_operators.py: 72 warnings /build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.13_dolfinx-complex/build/test/unit/fem/test_discrete_operators.py:253: ComplexWarning: Casting complex values to real discards the imaginary part ux[: len(u.x.array)] = u.x.array[:] test/unit/fem/test_expression.py::test_facet_expression[complex64] test/unit/fem/test_expression.py::test_facet_expression[complex128] /usr/lib/python3/dist-packages/ffcx/element_interface.py:47: ComplexWarning: Casting complex values to real discards the imaginary part return np.asarray( test/unit/fem/test_function.py::test_cffi_expression[float32-float] test/unit/fem/test_function.py::test_cffi_expression[float64-double] /usr/lib/python3/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.13_dolfinx-complex/build/../README.md' cannot be found for path in _filter_existing_files(_filepaths) test/unit/fem/test_function.py::test_cffi_expression[float32-float] test/unit/fem/test_function.py::test_cffi_expression[float64-double] /usr/lib/python3/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.13_dolfinx-complex/build/COPYING.LESSER' cannot be found for path in _filter_existing_files(_filepaths) test/unit/fem/test_function.py::test_cffi_expression[float32-float] /usr/lib/python3/dist-packages/setuptools/command/easy_install.py:41: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================= slowest 20 durations ============================= 109.66s call test/unit/fem/test_assembler.py::TestPETScAssemblers::test_symmetry_interior_facet_assembly[mesh1] 50.59s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[2-DQ-CellType.hexahedron] 35.78s call test/unit/fem/test_assembler.py::TestPETScAssemblers::test_symmetry_interior_facet_assembly[mesh0] 33.30s call test/unit/fem/test_fem_pipeline.py::test_BDM_N2curl_simplex_highest_order[3-BDM-CellType.tetrahedron] 30.29s call test/unit/la/test_nullspace.py::test_nullspace_check[2-3-complex128] 29.63s call test/unit/fem/test_assembler.py::TestPETScAssemblers::test_assembly_solve_taylor_hood[mesh2] 27.01s call test/unit/fem/test_fem_pipeline.py::test_petsc_curl_curl_eigenvalue[1-N2curl] 27.00s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[1-DQ-CellType.hexahedron] 26.63s call test/unit/fem/test_petsc_nonlinear_assembler.py::TestNLSPETSc::test_assembly_solve_taylor_hood_nl[mesh2] 24.62s call test/unit/fem/test_fem_pipeline.py::test_NC_hex[3-NCE-CellType.hexahedron] 24.13s call test/unit/fem/test_fem_pipeline.py::test_vector_P_tp[3-Q-CellType.hexahedron] 23.93s call test/unit/fem/test_fem_pipeline.py::test_DPC_hex[2-DPC-CellType.hexahedron] 23.06s call test/unit/fem/test_fem_pipeline.py::test_P_tp[4-Q-CellType.hexahedron] 22.66s call test/unit/la/test_nullspace.py::test_nullspace_check[2-3-complex64] 22.32s call test/unit/fem/test_fem_pipeline.py::test_BDM_N2curl_simplex_highest_order[3-N2curl-CellType.tetrahedron] 20.26s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name0] 19.87s call test/unit/fem/test_fem_pipeline.py::test_NC_hex[3-NCF-CellType.hexahedron] 18.58s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name1] 18.45s call test/unit/la/test_nullspace.py::test_nullspace_check[2-3-float32] 18.35s call test/unit/la/test_nullspace.py::test_nullspace_check[2-3-float64] = 2517 passed, 96 skipped, 27 xfailed, 5 xpassed, 79 warnings in 5797.98s (1:36:37) = I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.12_dolfinx-complex * Building wheel... *** scikit-build-core 0.10.7 using CMake 3.31.1 (wheel) *** Configuring CMake... loading initial cache file /tmp/tmpw5r416uf/build/CMakeInit.txt Re-run cmake no build system arguments -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python: /usr/bin/python3.12 (found version "3.12.7") found components: Interpreter Development Development.Module Development.Embed -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Checking for Basix hints with /usr/bin/python3.12 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.1", minimum required is "2.8.1") found components: CXX -- Found DOLFINx at /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx -- Found petsc4py include directory at /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -- Found mpi4py include directory at /usr/lib/python3/dist-packages/mpi4py/include -- Configuring done (18.2s) -- Generating done (0.1s) -- Build files have been written to: /tmp/tmpw5r416uf/build *** Building project with Unix Makefiles... 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[ 55%] test/unit/fem/test_petsc_nonlinear_assembler.py ...... [ 56%] test/unit/fem/test_petsc_solver_wrappers.py .. [ 56%] test/unit/fem/test_quadrature_elements.py .............................. [ 57%] ...... [ 57%] test/unit/fem/test_special_functions.py ... [ 57%] test/unit/fem/test_symmetric_tensor.py ........ [ 57%] test/unit/fem/test_symmetry.py ......................................... [ 59%] ....................................................... [ 61%] test/unit/fem/test_vector_assemble.py .. [ 61%] test/unit/fem/test_vector_function.py .......... [ 62%] test/unit/geometry/test_bounding_box_tree.py ........................... [ 63%] ................................. [ 64%] test/unit/geometry/test_gjk.py ......................................... [ 65%] ...................... [ 66%] test/unit/graph/test_adjacencylist.py .. [ 66%] test/unit/io/test_adios2.py ............................................ [ 68%] .....ssssssss [ 68%] test/unit/io/test_vtk.py ....................... [ 69%] test/unit/io/test_xdmf_function.py ..................................... [ 71%] ...........................................s [ 72%] test/unit/io/test_xdmf_mesh.py ..........ss............................. [ 74%] ................................... [ 75%] test/unit/io/test_xdmf_meshdata.py .. [ 75%] test/unit/io/test_xdmf_meshtags.py .... [ 75%] test/unit/la/test_matrix_csr.py ............................ [ 77%] test/unit/la/test_matrix_vector.py ............xxx....xxx....xxxxxxxxxx [ 78%] test/unit/la/test_nullspace.py ................................ [ 79%] test/unit/la/test_sparsity_pattern.py . [ 79%] test/unit/la/test_vector_scatter.py ........... [ 80%] test/unit/mesh/test_cell.py ... [ 80%] test/unit/mesh/test_create_mixed_mesh.py . [ 80%] test/unit/mesh/test_dual_graph.py . [ 80%] test/unit/mesh/test_face.py s. [ 80%] test/unit/mesh/test_ghost_mesh.py X..X...X [ 80%] test/unit/mesh/test_higher_order_mesh.py ............................... [ 81%] ....................x...x..........xx..xx.......ssssssssssssssssssssssss [ 84%] .................. [ 85%] test/unit/mesh/test_manifold_point_search.py . [ 85%] test/unit/mesh/test_mesh.py ....................ss....s................. [ 86%] ........................................................................ [ 89%] ........................................................................ [ 92%] ...................................................................... [ 95%] test/unit/mesh/test_mesh_partitioners.py ..ss..ss..ss..ss..ss..ss....... [ 96%] . [ 96%] test/unit/mesh/test_meshtags.py .... [ 96%] test/unit/mesh/test_mixed_topology.py .... [ 96%] test/unit/nls/test_newton.py ... [ 96%] test/unit/refinement/test_interval.py .................................. [ 97%] ...................................... [ 99%] test/unit/refinement/test_refinement.py ................. [100%] =============================== warnings summary =============================== test/unit/fem/test_discrete_operators.py: 72 warnings /build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.12_dolfinx-complex/build/test/unit/fem/test_discrete_operators.py:253: ComplexWarning: Casting complex values to real discards the imaginary part ux[: len(u.x.array)] = u.x.array[:] test/unit/fem/test_expression.py::test_facet_expression[complex64] test/unit/fem/test_expression.py::test_facet_expression[complex128] /usr/lib/python3/dist-packages/ffcx/element_interface.py:47: ComplexWarning: Casting complex values to real discards the imaginary part return np.asarray( test/unit/fem/test_function.py::test_cffi_expression[float32-float] test/unit/fem/test_function.py::test_cffi_expression[float64-double] /usr/lib/python3/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.12_dolfinx-complex/build/../README.md' cannot be found for path in _filter_existing_files(_filepaths) test/unit/fem/test_function.py::test_cffi_expression[float32-float] test/unit/fem/test_function.py::test_cffi_expression[float64-double] /usr/lib/python3/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.12_dolfinx-complex/build/COPYING.LESSER' cannot be found for path in _filter_existing_files(_filepaths) test/unit/fem/test_function.py::test_cffi_expression[float32-float] /usr/lib/python3/dist-packages/setuptools/command/easy_install.py:41: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================= slowest 20 durations ============================= 56.57s call test/unit/fem/test_fem_pipeline.py::test_BDM_N2curl_simplex_highest_order[3-BDM-CellType.tetrahedron] 55.53s call test/unit/fem/test_fem_pipeline.py::test_petsc_curl_curl_eigenvalue[1-N2curl] 54.99s call test/unit/fem/test_assembler.py::TestPETScAssemblers::test_symmetry_interior_facet_assembly[mesh1] 39.50s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[2-DQ-CellType.hexahedron] 30.39s call test/unit/fem/test_petsc_nonlinear_assembler.py::TestNLSPETSc::test_assembly_solve_taylor_hood_nl[mesh2] 27.17s call test/unit/fem/test_fem_pipeline.py::test_BDM_N2curl_simplex_highest_order[3-N2curl-CellType.tetrahedron] 24.70s call test/unit/fem/test_fem_pipeline.py::test_biharmonic[HHJ-float32] 22.92s call test/unit/fem/test_fem_pipeline.py::test_NC_hex[3-NCF-CellType.hexahedron] 22.88s call test/unit/fem/test_petsc_nonlinear_assembler.py::TestNLSPETSc::test_assembly_solve_block_nl 22.75s call test/unit/fem/test_fem_pipeline.py::test_dP_simplex[3-DG-CellType.tetrahedron] 22.28s call test/unit/fem/test_petsc_nonlinear_assembler.py::TestNLSPETSc::test_matrix_assembly_block_nl 21.66s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[1-DQ-CellType.hexahedron] 21.60s call test/unit/fem/test_fem_pipeline.py::test_vector_P_tp[3-Q-CellType.hexahedron] 21.14s call test/unit/fem/test_fem_pipeline.py::test_BDM_N2curl_simplex[2-N2curl-CellType.tetrahedron] 21.10s call test/unit/fem/test_fem_pipeline.py::test_NC_hex[3-NCE-CellType.hexahedron] 20.32s call test/unit/fem/test_fem_pipeline.py::test_biharmonic[Regge-float64] 20.27s call test/unit/fem/test_fem_pipeline.py::test_biharmonic[HHJ-float64] 19.66s call test/unit/fem/test_fem_pipeline.py::test_dP_simplex[2-DG-CellType.tetrahedron] 18.93s call test/unit/fem/test_petsc_nonlinear_assembler.py::TestNLSPETSc::test_assembly_solve_taylor_hood_nl[mesh0] 18.83s call test/unit/fem/test_fem_pipeline.py::test_DPC_hex[2-DPC-CellType.hexahedron] = 2517 passed, 96 skipped, 27 xfailed, 5 xpassed, 79 warnings in 5121.90s (1:25:21) = chrpath -d /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp*/usr/lib/python*/dist-packages/dolfinx/*.so sed -i "s/-D_FORTIFY_SOURCE=2//g" /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp*/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx*.pc sed -i "s|-DNDEBUG||g" /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp*/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx*.pc if [ "x" != "xno" ]; then \ case " mips64el hurd-i386 m68k sh4 " in \ *\ amd64\ *) echo "ALL tests have been disabled on amd64";; \ *) set -e; \ export CTEST_OUTPUT_ON_FAILURE=1; \ for build in real complex; do \ echo "== testing $build number build =="; \ builddir=/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-${build}; \ for mytest in test demo; do \ echo "running tests from $mytest for $build build"; \ testdir=${builddir}/run_${mytest}; \ mkdir -p $testdir; \ cd $testdir; \ if [ "x" != "x" ]; then echo "set(CTEST_CUSTOM_TESTS_IGNORE )" >> CTestCustom.cmake; fi; \ PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-${build} SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-${build} cmake -DCMAKE_MODULE_PATH=/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-${build}/usr/lib/x86_64-linux-gnu/cmake/dolfinx \ -DDOLFINX_DIR=/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-${build}/usr/lib/x86_64-linux-gnu/cmake/dolfinx \ -DMPIEXEC_PARAMS:STRING="--oversubscribe" \ /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/${mytest}; \ make all VERBOSE=1; \ OMPI_ALLOW_RUN_AS_ROOT=1 OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1 make test VERBOSE=1; \ done; \ cd /build/reproducible-path/fenics-dolfinx-0.9.0; \ done; \ esac; \ fi == testing real number build == running tests from test for real build -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Checking for Basix hints with /usr/bin/python3 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.1", minimum required is "2.8.1") found components: CXX -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Configuring done (10.4s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: MPIEXEC_PARAMS -- Build files have been written to: /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test -B/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test/CMakeFiles /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test' make -f CMakeFiles/unittests.dir/build.make CMakeFiles/unittests.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test' [ 5%] Compile poisson.py using FFCx ffcx /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/poisson.py cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test/CMakeFiles/unittests.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test' make -f CMakeFiles/unittests.dir/build.make CMakeFiles/unittests.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test' [ 11%] Building CXX object CMakeFiles/unittests.dir/main.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/main.cpp.o -MF CMakeFiles/unittests.dir/main.cpp.o.d -o CMakeFiles/unittests.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/main.cpp [ 17%] Building CXX object CMakeFiles/unittests.dir/vector.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/vector.cpp.o -MF CMakeFiles/unittests.dir/vector.cpp.o.d -o CMakeFiles/unittests.dir/vector.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/vector.cpp [ 23%] Building CXX object CMakeFiles/unittests.dir/matrix.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 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CMakeFiles/unittests.dir/common/sort.cpp.o CMakeFiles/unittests.dir/fem/functionspace.cpp.o CMakeFiles/unittests.dir/mesh/distributed_mesh.cpp.o CMakeFiles/unittests.dir/mesh/generation.cpp.o CMakeFiles/unittests.dir/common/CIFailure.cpp.o CMakeFiles/unittests.dir/mesh/refinement/interval.cpp.o CMakeFiles/unittests.dir/mesh/refinement/option.cpp.o CMakeFiles/unittests.dir/mesh/refinement/rectangle.cpp.o CMakeFiles/unittests.dir/poisson.c.o -o unittests -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib /usr/lib/libCatch2Main.a /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9.0 /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test' [100%] Built target unittests make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test' make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test' Running tests... /usr/bin/ctest --force-new-ctest-process Test project /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test Start 1: unittests 1/1 Test #1: unittests ........................ Passed 1.27 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 1.28 sec make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test' running tests from demo for real build -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Checking for Basix hints with /usr/bin/python3 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.1", minimum required is "2.8.1") found components: CXX -- Looking for PETSC_USE_REAL_DOUBLE -- Looking for PETSC_USE_REAL_DOUBLE - found -- Performing Test HAVE_NO_MULTLINE -- Performing Test HAVE_NO_MULTLINE - Success -- Configuring done (7.8s) -- Generating done (0.1s) -- Build files have been written to: /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo -B/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/CMakeFiles /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' make -f biharmonic/CMakeFiles/demo_biharmonic.dir/build.make biharmonic/CMakeFiles/demo_biharmonic.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 3%] Compile biharmonic.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic && ffcx /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic/biharmonic.py --scalar_type=float64 cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic/CMakeFiles/demo_biharmonic.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' make -f biharmonic/CMakeFiles/demo_biharmonic.dir/build.make biharmonic/CMakeFiles/demo_biharmonic.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 7%] Building CXX object biharmonic/CMakeFiles/demo_biharmonic.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT biharmonic/CMakeFiles/demo_biharmonic.dir/main.cpp.o -MF CMakeFiles/demo_biharmonic.dir/main.cpp.o.d -o CMakeFiles/demo_biharmonic.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic/main.cpp [ 11%] Building C object biharmonic/CMakeFiles/demo_biharmonic.dir/biharmonic.c.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT biharmonic/CMakeFiles/demo_biharmonic.dir/biharmonic.c.o -MF CMakeFiles/demo_biharmonic.dir/biharmonic.c.o.d -o CMakeFiles/demo_biharmonic.dir/biharmonic.c.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic/biharmonic.c [ 15%] Linking CXX executable demo_biharmonic cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_biharmonic.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_biharmonic.dir/link.d CMakeFiles/demo_biharmonic.dir/main.cpp.o CMakeFiles/demo_biharmonic.dir/biharmonic.c.o -o demo_biharmonic -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 15%] Built target demo_biharmonic make -f codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/build.make codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 19%] Compile mixed_codim0.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/codim_0_assembly && ffcx /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly/mixed_codim0.py --scalar_type=float64 cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/codim_0_assembly /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' make -f codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/build.make codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 23%] Building CXX object codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/codim_0_assembly && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/codim_0_assembly -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/main.cpp.o -MF CMakeFiles/demo_codim_0_assembly.dir/main.cpp.o.d -o CMakeFiles/demo_codim_0_assembly.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly/main.cpp [ 26%] Building C object codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/mixed_codim0.c.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/codim_0_assembly && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/codim_0_assembly -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/mixed_codim0.c.o -MF CMakeFiles/demo_codim_0_assembly.dir/mixed_codim0.c.o.d -o CMakeFiles/demo_codim_0_assembly.dir/mixed_codim0.c.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/codim_0_assembly/mixed_codim0.c [ 30%] Linking CXX executable demo_codim_0_assembly cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/codim_0_assembly && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_codim_0_assembly.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_codim_0_assembly.dir/link.d CMakeFiles/demo_codim_0_assembly.dir/main.cpp.o CMakeFiles/demo_codim_0_assembly.dir/mixed_codim0.c.o -o demo_codim_0_assembly -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 30%] Built target demo_codim_0_assembly make -f custom_kernel/CMakeFiles/demo_custom_kernel.dir/build.make custom_kernel/CMakeFiles/demo_custom_kernel.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/custom_kernel /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/custom_kernel /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/custom_kernel/CMakeFiles/demo_custom_kernel.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' make -f custom_kernel/CMakeFiles/demo_custom_kernel.dir/build.make custom_kernel/CMakeFiles/demo_custom_kernel.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 34%] Building CXX object custom_kernel/CMakeFiles/demo_custom_kernel.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/custom_kernel && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/custom_kernel -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/custom_kernel -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT custom_kernel/CMakeFiles/demo_custom_kernel.dir/main.cpp.o -MF CMakeFiles/demo_custom_kernel.dir/main.cpp.o.d -o CMakeFiles/demo_custom_kernel.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/custom_kernel/main.cpp [ 38%] Linking CXX executable demo_custom_kernel cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/custom_kernel && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_custom_kernel.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_custom_kernel.dir/link.d CMakeFiles/demo_custom_kernel.dir/main.cpp.o -o demo_custom_kernel -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 38%] Built target demo_custom_kernel make -f poisson/CMakeFiles/demo_poisson.dir/build.make poisson/CMakeFiles/demo_poisson.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 42%] Compile poisson.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson && ffcx /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson/poisson.py --scalar_type=float64 cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson/CMakeFiles/demo_poisson.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' make -f poisson/CMakeFiles/demo_poisson.dir/build.make poisson/CMakeFiles/demo_poisson.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 46%] Building CXX object poisson/CMakeFiles/demo_poisson.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT poisson/CMakeFiles/demo_poisson.dir/main.cpp.o -MF CMakeFiles/demo_poisson.dir/main.cpp.o.d -o CMakeFiles/demo_poisson.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson/main.cpp [ 50%] Building C object poisson/CMakeFiles/demo_poisson.dir/poisson.c.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT poisson/CMakeFiles/demo_poisson.dir/poisson.c.o -MF CMakeFiles/demo_poisson.dir/poisson.c.o.d -o CMakeFiles/demo_poisson.dir/poisson.c.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson/poisson.c [ 53%] Linking CXX executable demo_poisson cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_poisson.dir/link.d CMakeFiles/demo_poisson.dir/main.cpp.o CMakeFiles/demo_poisson.dir/poisson.c.o -o demo_poisson -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 53%] Built target demo_poisson make -f poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/build.make poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 57%] Compile poisson.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free && ffcx /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free/poisson.py --scalar_type=float64 cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' make -f poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/build.make poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 61%] Building CXX object poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o -MF CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o.d -o CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free/main.cpp [ 65%] Building C object poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o -MF CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o.d -o CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free/poisson.c [ 69%] Linking CXX executable demo_poisson_matrix_free cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson_matrix_free.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_poisson_matrix_free.dir/link.d CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o -o demo_poisson_matrix_free -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 69%] Built target demo_poisson_matrix_free make -f hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/build.make hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 73%] Compile hyperelasticity.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity && ffcx /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/hyperelasticity/hyperelasticity.py --scalar_type=float64 cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/hyperelasticity /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' make -f hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/build.make hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 76%] Building CXX object hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/hyperelasticity -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/main.cpp.o -MF CMakeFiles/demo_hyperelasticity.dir/main.cpp.o.d -o CMakeFiles/demo_hyperelasticity.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/hyperelasticity/main.cpp [ 80%] Building C object hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/hyperelasticity.c.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/hyperelasticity -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/hyperelasticity.c.o -MF CMakeFiles/demo_hyperelasticity.dir/hyperelasticity.c.o.d -o CMakeFiles/demo_hyperelasticity.dir/hyperelasticity.c.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity/hyperelasticity.c [ 84%] Linking CXX executable demo_hyperelasticity cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_hyperelasticity.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_hyperelasticity.dir/link.d CMakeFiles/demo_hyperelasticity.dir/main.cpp.o CMakeFiles/demo_hyperelasticity.dir/hyperelasticity.c.o -o demo_hyperelasticity -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 84%] Built target demo_hyperelasticity make -f interpolation-io/CMakeFiles/demo_interpolation-io.dir/build.make interpolation-io/CMakeFiles/demo_interpolation-io.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation-io /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/interpolation-io /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/interpolation-io/CMakeFiles/demo_interpolation-io.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' make -f interpolation-io/CMakeFiles/demo_interpolation-io.dir/build.make interpolation-io/CMakeFiles/demo_interpolation-io.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 88%] Building CXX object interpolation-io/CMakeFiles/demo_interpolation-io.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/interpolation-io && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/interpolation-io -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation-io -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT interpolation-io/CMakeFiles/demo_interpolation-io.dir/main.cpp.o -MF CMakeFiles/demo_interpolation-io.dir/main.cpp.o.d -o CMakeFiles/demo_interpolation-io.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation-io/main.cpp [ 92%] Linking CXX executable demo_interpolation-io cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/interpolation-io && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_interpolation-io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_interpolation-io.dir/link.d "CMakeFiles/demo_interpolation-io.dir/main.cpp.o" -o demo_interpolation-io -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 92%] Built target demo_interpolation-io make -f interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/build.make interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation_different_meshes /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/interpolation_different_meshes /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' make -f interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/build.make interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 96%] Building CXX object interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/interpolation_different_meshes && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/interpolation_different_meshes -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation_different_meshes -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o -MF CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o.d -o CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation_different_meshes/main.cpp [100%] Linking CXX executable demo_interpolation_different_meshes cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/interpolation_different_meshes && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_interpolation_different_meshes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_interpolation_different_meshes.dir/link.d CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o -o demo_interpolation_different_meshes -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [100%] Built target demo_interpolation_different_meshes make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' Running tests... /usr/bin/ctest --force-new-ctest-process Test project /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo Start 1: demo_biharmonic_mpi_2 1/24 Test #1: demo_biharmonic_mpi_2 ........................ Passed 1.19 sec Start 2: demo_biharmonic_mpi_3 2/24 Test #2: demo_biharmonic_mpi_3 ........................ Passed 1.39 sec Start 3: demo_biharmonic_serial 3/24 Test #3: demo_biharmonic_serial ....................... Passed 0.66 sec Start 4: demo_codim_0_assembly_mpi_2 4/24 Test #4: demo_codim_0_assembly_mpi_2 .................. Passed 0.68 sec Start 5: demo_codim_0_assembly_mpi_3 5/24 Test #5: demo_codim_0_assembly_mpi_3 .................. Passed 0.58 sec Start 6: demo_codim_0_assembly_serial 6/24 Test #6: demo_codim_0_assembly_serial ................. Passed 0.43 sec Start 7: demo_custom_kernel_mpi_2 7/24 Test #7: demo_custom_kernel_mpi_2 ..................... Passed 2.14 sec Start 8: demo_custom_kernel_mpi_3 8/24 Test #8: demo_custom_kernel_mpi_3 ..................... Passed 2.62 sec Start 9: demo_custom_kernel_serial 9/24 Test #9: demo_custom_kernel_serial .................... Passed 1.59 sec Start 10: demo_poisson_mpi_2 10/24 Test #10: demo_poisson_mpi_2 ........................... Passed 1.04 sec Start 11: demo_poisson_mpi_3 11/24 Test #11: demo_poisson_mpi_3 ........................... Passed 0.81 sec Start 12: demo_poisson_serial 12/24 Test #12: demo_poisson_serial .......................... Passed 0.46 sec Start 13: demo_poisson_matrix_free_mpi_2 13/24 Test #13: demo_poisson_matrix_free_mpi_2 ............... Passed 0.61 sec Start 14: demo_poisson_matrix_free_mpi_3 14/24 Test #14: demo_poisson_matrix_free_mpi_3 ............... Passed 0.78 sec Start 15: demo_poisson_matrix_free_serial 15/24 Test #15: demo_poisson_matrix_free_serial .............. Passed 0.43 sec Start 16: demo_hyperelasticity_mpi_2 16/24 Test #16: demo_hyperelasticity_mpi_2 ................... Passed 2.75 sec Start 17: demo_hyperelasticity_mpi_3 17/24 Test #17: demo_hyperelasticity_mpi_3 ................... Passed 3.95 sec Start 18: demo_hyperelasticity_serial 18/24 Test #18: demo_hyperelasticity_serial .................. Passed 1.93 sec Start 19: demo_interpolation-io_mpi_2 19/24 Test #19: demo_interpolation-io_mpi_2 .................. Passed 0.77 sec Start 20: demo_interpolation-io_mpi_3 20/24 Test #20: demo_interpolation-io_mpi_3 .................. Passed 0.69 sec Start 21: demo_interpolation-io_serial 21/24 Test #21: demo_interpolation-io_serial ................. Passed 0.58 sec Start 22: demo_interpolation_different_meshes_mpi_2 22/24 Test #22: demo_interpolation_different_meshes_mpi_2 .... Passed 5.42 sec Start 23: demo_interpolation_different_meshes_mpi_3 23/24 Test #23: demo_interpolation_different_meshes_mpi_3 .... Passed 10.74 sec Start 24: demo_interpolation_different_meshes_serial 24/24 Test #24: demo_interpolation_different_meshes_serial ... Passed 1.90 sec 100% tests passed, 0 tests failed out of 24 Total Test time (real) = 44.19 sec make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' == testing complex number build == running tests from test for complex build -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Checking for Basix hints with /usr/bin/python3 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.1", minimum required is "2.8.1") found components: CXX -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Configuring done (5.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: MPIEXEC_PARAMS -- Build files have been written to: /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test -B/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test/CMakeFiles /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test' make -f CMakeFiles/unittests.dir/build.make CMakeFiles/unittests.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test' [ 5%] Compile poisson.py using FFCx ffcx /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/poisson.py cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test/CMakeFiles/unittests.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test' make -f CMakeFiles/unittests.dir/build.make CMakeFiles/unittests.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test' [ 11%] Building CXX object CMakeFiles/unittests.dir/main.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/main.cpp.o -MF CMakeFiles/unittests.dir/main.cpp.o.d -o CMakeFiles/unittests.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/main.cpp [ 17%] Building CXX object CMakeFiles/unittests.dir/vector.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/vector.cpp.o -MF CMakeFiles/unittests.dir/vector.cpp.o.d -o CMakeFiles/unittests.dir/vector.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/vector.cpp [ 23%] Building CXX object CMakeFiles/unittests.dir/matrix.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/matrix.cpp.o -MF CMakeFiles/unittests.dir/matrix.cpp.o.d -o CMakeFiles/unittests.dir/matrix.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/matrix.cpp [ 29%] Building CXX object CMakeFiles/unittests.dir/io.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/io.cpp.o -MF CMakeFiles/unittests.dir/io.cpp.o.d -o CMakeFiles/unittests.dir/io.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/io.cpp [ 35%] Building CXX object CMakeFiles/unittests.dir/common/sub_systems_manager.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/common/sub_systems_manager.cpp.o -MF CMakeFiles/unittests.dir/common/sub_systems_manager.cpp.o.d -o CMakeFiles/unittests.dir/common/sub_systems_manager.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/common/sub_systems_manager.cpp [ 41%] Building CXX object CMakeFiles/unittests.dir/common/index_map.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/common/index_map.cpp.o -MF CMakeFiles/unittests.dir/common/index_map.cpp.o.d -o CMakeFiles/unittests.dir/common/index_map.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/common/index_map.cpp [ 47%] Building CXX object CMakeFiles/unittests.dir/common/sort.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem 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-g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/mesh/distributed_mesh.cpp.o -MF CMakeFiles/unittests.dir/mesh/distributed_mesh.cpp.o.d -o CMakeFiles/unittests.dir/mesh/distributed_mesh.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/mesh/distributed_mesh.cpp [ 64%] Building CXX object CMakeFiles/unittests.dir/mesh/generation.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/mesh/generation.cpp.o -MF CMakeFiles/unittests.dir/mesh/generation.cpp.o.d -o CMakeFiles/unittests.dir/mesh/generation.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/mesh/generation.cpp [ 70%] Building CXX object CMakeFiles/unittests.dir/common/CIFailure.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB 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/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/libpetsc_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test' [100%] Built target unittests make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test' make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test' Running tests... /usr/bin/ctest --force-new-ctest-process Test project /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test Start 1: unittests 1/1 Test #1: unittests ........................ Passed 2.30 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 2.31 sec make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test' running tests from demo for complex build -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Checking for Basix hints with /usr/bin/python3 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.1", minimum required is "2.8.1") found components: CXX -- Looking for PETSC_USE_REAL_DOUBLE -- Looking for PETSC_USE_REAL_DOUBLE - found -- Performing Test HAVE_NO_MULTLINE -- Performing Test HAVE_NO_MULTLINE - Success -- ** This demo does not support complex mode -- Configuring done (14.9s) -- Generating done (0.2s) -- Build files have been written to: /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo -B/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/CMakeFiles /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' make -f biharmonic/CMakeFiles/demo_biharmonic.dir/build.make biharmonic/CMakeFiles/demo_biharmonic.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 4%] Compile biharmonic.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic && ffcx /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic/biharmonic.py --scalar_type=complex128 cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic/CMakeFiles/demo_biharmonic.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' make -f biharmonic/CMakeFiles/demo_biharmonic.dir/build.make biharmonic/CMakeFiles/demo_biharmonic.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 9%] Building CXX object biharmonic/CMakeFiles/demo_biharmonic.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT biharmonic/CMakeFiles/demo_biharmonic.dir/main.cpp.o -MF CMakeFiles/demo_biharmonic.dir/main.cpp.o.d -o CMakeFiles/demo_biharmonic.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic/main.cpp [ 13%] Building C object biharmonic/CMakeFiles/demo_biharmonic.dir/biharmonic.c.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT biharmonic/CMakeFiles/demo_biharmonic.dir/biharmonic.c.o -MF CMakeFiles/demo_biharmonic.dir/biharmonic.c.o.d -o CMakeFiles/demo_biharmonic.dir/biharmonic.c.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic/biharmonic.c [ 18%] Linking CXX executable demo_biharmonic cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_biharmonic.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_biharmonic.dir/link.d CMakeFiles/demo_biharmonic.dir/main.cpp.o CMakeFiles/demo_biharmonic.dir/biharmonic.c.o -o demo_biharmonic -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/libpetsc_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 18%] Built target demo_biharmonic make -f codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/build.make codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 22%] Compile mixed_codim0.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/codim_0_assembly && ffcx /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly/mixed_codim0.py --scalar_type=complex128 cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/codim_0_assembly /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' make -f codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/build.make codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 27%] Building CXX object codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/codim_0_assembly && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/codim_0_assembly -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/main.cpp.o -MF CMakeFiles/demo_codim_0_assembly.dir/main.cpp.o.d -o CMakeFiles/demo_codim_0_assembly.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly/main.cpp [ 31%] Building C object codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/mixed_codim0.c.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/codim_0_assembly && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/codim_0_assembly -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/mixed_codim0.c.o -MF CMakeFiles/demo_codim_0_assembly.dir/mixed_codim0.c.o.d -o CMakeFiles/demo_codim_0_assembly.dir/mixed_codim0.c.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/codim_0_assembly/mixed_codim0.c [ 36%] Linking CXX executable demo_codim_0_assembly cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/codim_0_assembly && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_codim_0_assembly.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_codim_0_assembly.dir/link.d CMakeFiles/demo_codim_0_assembly.dir/main.cpp.o CMakeFiles/demo_codim_0_assembly.dir/mixed_codim0.c.o -o demo_codim_0_assembly -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/libpetsc_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 36%] Built target demo_codim_0_assembly make -f custom_kernel/CMakeFiles/demo_custom_kernel.dir/build.make custom_kernel/CMakeFiles/demo_custom_kernel.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/custom_kernel /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/custom_kernel /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/custom_kernel/CMakeFiles/demo_custom_kernel.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' make -f custom_kernel/CMakeFiles/demo_custom_kernel.dir/build.make custom_kernel/CMakeFiles/demo_custom_kernel.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 40%] Building CXX object custom_kernel/CMakeFiles/demo_custom_kernel.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/custom_kernel && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/custom_kernel -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/custom_kernel -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT custom_kernel/CMakeFiles/demo_custom_kernel.dir/main.cpp.o -MF CMakeFiles/demo_custom_kernel.dir/main.cpp.o.d -o CMakeFiles/demo_custom_kernel.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/custom_kernel/main.cpp [ 45%] Linking CXX executable demo_custom_kernel cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/custom_kernel && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_custom_kernel.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_custom_kernel.dir/link.d CMakeFiles/demo_custom_kernel.dir/main.cpp.o -o demo_custom_kernel -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/libpetsc_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 45%] Built target demo_custom_kernel make -f poisson/CMakeFiles/demo_poisson.dir/build.make poisson/CMakeFiles/demo_poisson.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 50%] Compile poisson.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson && ffcx /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson/poisson.py --scalar_type=complex128 cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson/CMakeFiles/demo_poisson.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' make -f poisson/CMakeFiles/demo_poisson.dir/build.make poisson/CMakeFiles/demo_poisson.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 54%] Building CXX object poisson/CMakeFiles/demo_poisson.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT poisson/CMakeFiles/demo_poisson.dir/main.cpp.o -MF CMakeFiles/demo_poisson.dir/main.cpp.o.d -o CMakeFiles/demo_poisson.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson/main.cpp [ 59%] Building C object poisson/CMakeFiles/demo_poisson.dir/poisson.c.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT poisson/CMakeFiles/demo_poisson.dir/poisson.c.o -MF CMakeFiles/demo_poisson.dir/poisson.c.o.d -o CMakeFiles/demo_poisson.dir/poisson.c.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson/poisson.c [ 63%] Linking CXX executable demo_poisson cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_poisson.dir/link.d CMakeFiles/demo_poisson.dir/main.cpp.o CMakeFiles/demo_poisson.dir/poisson.c.o -o demo_poisson -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/libpetsc_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 63%] Built target demo_poisson make -f poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/build.make poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 68%] Compile poisson.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free && ffcx /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free/poisson.py --scalar_type=complex128 cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' make -f poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/build.make poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 72%] Building CXX object poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o -MF CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o.d -o CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free/main.cpp [ 77%] Building C object poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o -MF CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o.d -o CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free/poisson.c [ 81%] Linking CXX executable demo_poisson_matrix_free cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson_matrix_free.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_poisson_matrix_free.dir/link.d CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o -o demo_poisson_matrix_free -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/libpetsc_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 81%] Built target demo_poisson_matrix_free make -f interpolation-io/CMakeFiles/demo_interpolation-io.dir/build.make interpolation-io/CMakeFiles/demo_interpolation-io.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation-io /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation-io /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation-io/CMakeFiles/demo_interpolation-io.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' make -f interpolation-io/CMakeFiles/demo_interpolation-io.dir/build.make interpolation-io/CMakeFiles/demo_interpolation-io.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 86%] Building CXX object interpolation-io/CMakeFiles/demo_interpolation-io.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation-io && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation-io -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation-io -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT interpolation-io/CMakeFiles/demo_interpolation-io.dir/main.cpp.o -MF CMakeFiles/demo_interpolation-io.dir/main.cpp.o.d -o CMakeFiles/demo_interpolation-io.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation-io/main.cpp [ 90%] Linking CXX executable demo_interpolation-io cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation-io && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_interpolation-io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_interpolation-io.dir/link.d "CMakeFiles/demo_interpolation-io.dir/main.cpp.o" -o demo_interpolation-io -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/libpetsc_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 90%] Built target demo_interpolation-io make -f interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/build.make interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation_different_meshes /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation_different_meshes /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' make -f interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/build.make interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 95%] Building CXX object interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation_different_meshes && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation_different_meshes -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation_different_meshes -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o -MF CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o.d -o CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation_different_meshes/main.cpp [100%] Linking CXX executable demo_interpolation_different_meshes cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation_different_meshes && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_interpolation_different_meshes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_interpolation_different_meshes.dir/link.d CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o -o demo_interpolation_different_meshes -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/libpetsc_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [100%] Built target demo_interpolation_different_meshes make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' Running tests... /usr/bin/ctest --force-new-ctest-process Test project /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo Start 1: demo_biharmonic_mpi_2 1/21 Test #1: demo_biharmonic_mpi_2 ........................ Passed 0.79 sec Start 2: demo_biharmonic_mpi_3 2/21 Test #2: demo_biharmonic_mpi_3 ........................ Passed 0.74 sec Start 3: demo_biharmonic_serial 3/21 Test #3: demo_biharmonic_serial ....................... Passed 0.82 sec Start 4: demo_codim_0_assembly_mpi_2 4/21 Test #4: demo_codim_0_assembly_mpi_2 .................. Passed 0.53 sec Start 5: demo_codim_0_assembly_mpi_3 5/21 Test #5: demo_codim_0_assembly_mpi_3 .................. Passed 0.58 sec Start 6: demo_codim_0_assembly_serial 6/21 Test #6: demo_codim_0_assembly_serial ................. Passed 0.40 sec Start 7: demo_custom_kernel_mpi_2 7/21 Test #7: demo_custom_kernel_mpi_2 ..................... Passed 4.19 sec Start 8: demo_custom_kernel_mpi_3 8/21 Test #8: demo_custom_kernel_mpi_3 ..................... Passed 5.93 sec Start 9: demo_custom_kernel_serial 9/21 Test #9: demo_custom_kernel_serial .................... Passed 1.50 sec Start 10: demo_poisson_mpi_2 10/21 Test #10: demo_poisson_mpi_2 ........................... Passed 3.17 sec Start 11: demo_poisson_mpi_3 11/21 Test #11: demo_poisson_mpi_3 ........................... Passed 3.22 sec Start 12: demo_poisson_serial 12/21 Test #12: demo_poisson_serial .......................... Passed 0.65 sec Start 13: demo_poisson_matrix_free_mpi_2 13/21 Test #13: demo_poisson_matrix_free_mpi_2 ............... Passed 1.47 sec Start 14: demo_poisson_matrix_free_mpi_3 14/21 Test #14: demo_poisson_matrix_free_mpi_3 ............... Passed 1.05 sec Start 15: demo_poisson_matrix_free_serial 15/21 Test #15: demo_poisson_matrix_free_serial .............. Passed 0.50 sec Start 16: demo_interpolation-io_mpi_2 16/21 Test #16: demo_interpolation-io_mpi_2 .................. Passed 1.27 sec Start 17: demo_interpolation-io_mpi_3 17/21 Test #17: demo_interpolation-io_mpi_3 .................. Passed 3.00 sec Start 18: demo_interpolation-io_serial 18/21 Test #18: demo_interpolation-io_serial ................. Passed 0.58 sec Start 19: demo_interpolation_different_meshes_mpi_2 19/21 Test #19: demo_interpolation_different_meshes_mpi_2 .... Passed 6.34 sec Start 20: demo_interpolation_different_meshes_mpi_3 20/21 Test #20: demo_interpolation_different_meshes_mpi_3 .... Passed 12.31 sec Start 21: demo_interpolation_different_meshes_serial 21/21 Test #21: demo_interpolation_different_meshes_serial ... Passed 1.90 sec 100% tests passed, 0 tests failed out of 21 Total Test time (real) = 50.96 sec make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' debian/rules override_dh_auto_install-indep make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_auto_install -i --builddir=/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex --destdir=debian/tmp-complex cd obj-x86_64-linux-gnu-complex && make -j20 install DESTDIR=/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -B/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.9.0 -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.9 -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets.cmake -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets-relwithdebinfo.cmake -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/defines.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/dolfinx_common.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/dolfinx_doc.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/IndexMap.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/log.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/sort.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/types.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/math.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/MPI.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/Scatterer.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/Table.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/Timer.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/TimeLogger.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/TimeLogManager.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/timing.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/utils.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/Constant.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/CoordinateElement.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/DirichletBC.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/DofMap.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/ElementDofLayout.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/Expression.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/FiniteElement.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/Form.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/Function.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/FunctionSpace.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/assembler.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/assemble_matrix_impl.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/assemble_scalar_impl.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/assemble_vector_impl.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/discreteoperators.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/dofmapbuilder.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/dolfinx_fem.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/interpolate.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/petsc.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/sparsitybuild.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/traits.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/utils.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/geometry/BoundingBoxTree.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/geometry/gjk.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/geometry/dolfinx_geometry.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/geometry/utils.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/graph/AdjacencyList.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/graph/dolfinx_graph.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/graph/ordering.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/graph/partitioners.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/graph/partition.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/dolfinx_io.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/ADIOS2Writers.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/cells.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/HDF5Interface.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/vtk_utils.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/VTKFile.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/XDMFFile.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/xdmf_function.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/xdmf_mesh.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/xdmf_utils.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/dolfinx_la.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/MatrixCSR.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/matrix_csr_impl.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/SparsityPattern.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/Vector.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/petsc.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/utils.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/slepc.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/dolfinx_mesh.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/Mesh.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/Geometry.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/Topology.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/MeshTags.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/cell_types.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/generation.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/graphbuild.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/permutationcomputation.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/topologycomputation.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/utils.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/nls/dolfinx_nls.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/nls/NewtonSolver.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/refinement/dolfinx_refinement.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/refinement/interval.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/refinement/plaza.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/refinement/refine.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/refinement/utils.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/refinement/option.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/version.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfig.cmake -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfigVersion.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx_complex.pc -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf ---------------------------------------------------------------------------- DOLFINx has now been installed in /usr and demo programs have been installed in /usr/share/dolfinx/demo Don't forget to update your environment variables. This can be done easily using the helper file 'dolfinx.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf ---------------------------------------------------------------------------- make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' (cd cpp/doc; doxygen) warning: Tag 'HTML_TIMESTAMP' at line 1387 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 2055 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Doxygen version used: 1.9.8 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/nls Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/custom_kernel Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation_different_meshes Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation-io Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/hyperelasticity Reading and parsing tag files Parsing files Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/defines.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/defines.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/defines.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/defines.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/dolfinx_common.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/dolfinx_common.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/dolfinx_doc.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/dolfinx_doc.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/IndexMap.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/IndexMap.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/IndexMap.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/IndexMap.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/log.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/log.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/log.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/log.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/math.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/math.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/MPI.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/MPI.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/MPI.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/MPI.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Scatterer.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Scatterer.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/sort.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/sort.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Table.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Table.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Table.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Table.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/TimeLogger.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/TimeLogger.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/TimeLogger.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/TimeLogger.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/TimeLogManager.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/TimeLogManager.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/TimeLogManager.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/TimeLogManager.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Timer.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Timer.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Timer.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Timer.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/timing.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/timing.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/timing.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/timing.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/types.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/types.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/utils.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/utils.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/dolfinx.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/dolfinx.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/assemble_matrix_impl.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/assemble_matrix_impl.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/assemble_scalar_impl.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/assemble_scalar_impl.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/assemble_vector_impl.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/assemble_vector_impl.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/assembler.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/assembler.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/Constant.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/Constant.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/CoordinateElement.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/CoordinateElement.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/CoordinateElement.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/CoordinateElement.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/DirichletBC.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/DirichletBC.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/DirichletBC.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/DirichletBC.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/discreteoperators.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/discreteoperators.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/DofMap.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/DofMap.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/DofMap.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/DofMap.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/dofmapbuilder.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/dofmapbuilder.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/dofmapbuilder.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/dofmapbuilder.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/dolfinx_fem.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/dolfinx_fem.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/ElementDofLayout.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/ElementDofLayout.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/ElementDofLayout.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/ElementDofLayout.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/Expression.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/Expression.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/FiniteElement.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/FiniteElement.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/FiniteElement.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/FiniteElement.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/Form.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/Form.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/Function.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/Function.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/FunctionSpace.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/FunctionSpace.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/interpolate.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/interpolate.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/petsc.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/petsc.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/petsc.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/petsc.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/sparsitybuild.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/sparsitybuild.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/sparsitybuild.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/sparsitybuild.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/traits.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/traits.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/utils.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/utils.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/utils.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/utils.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/BoundingBoxTree.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/BoundingBoxTree.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/dolfinx_geometry.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/dolfinx_geometry.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/gjk.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/gjk.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/utils.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/utils.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/AdjacencyList.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/AdjacencyList.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/dolfinx_graph.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/dolfinx_graph.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/ordering.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/ordering.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/ordering.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/ordering.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/partition.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/partition.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/partition.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/partition.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/partitioners.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/partitioners.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/partitioners.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/partitioners.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/ADIOS2Writers.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/ADIOS2Writers.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/ADIOS2Writers.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/ADIOS2Writers.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/cells.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/cells.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/cells.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/cells.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/dolfinx_io.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/dolfinx_io.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/HDF5Interface.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/HDF5Interface.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/HDF5Interface.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/HDF5Interface.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/vtk_utils.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/vtk_utils.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/vtk_utils.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/vtk_utils.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/VTKFile.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/VTKFile.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/VTKFile.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/VTKFile.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_function.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_function.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_function.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_function.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_mesh.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_mesh.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_mesh.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_mesh.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_utils.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_utils.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_utils.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_utils.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/XDMFFile.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/XDMFFile.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/XDMFFile.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/XDMFFile.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/dolfinx_la.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/dolfinx_la.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/matrix_csr_impl.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/matrix_csr_impl.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/MatrixCSR.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/MatrixCSR.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/petsc.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/petsc.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/petsc.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/petsc.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/slepc.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/slepc.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/slepc.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/slepc.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/SparsityPattern.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/SparsityPattern.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/SparsityPattern.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/SparsityPattern.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/utils.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/utils.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/Vector.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/Vector.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/cell_types.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/cell_types.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/cell_types.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/cell_types.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/dolfinx_mesh.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/dolfinx_mesh.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/generation.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/generation.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/Geometry.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/Geometry.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/graphbuild.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/graphbuild.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/graphbuild.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/graphbuild.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/Mesh.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/Mesh.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/MeshTags.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/MeshTags.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/permutationcomputation.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/permutationcomputation.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/permutationcomputation.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/permutationcomputation.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/Topology.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/Topology.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/Topology.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/Topology.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/topologycomputation.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/topologycomputation.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/topologycomputation.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/topologycomputation.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/utils.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/utils.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/utils.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/utils.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/nls/dolfinx_nls.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/nls/dolfinx_nls.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/nls/NewtonSolver.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/nls/NewtonSolver.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/nls/NewtonSolver.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/nls/NewtonSolver.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/dolfinx_refinement.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/dolfinx_refinement.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/interval.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/interval.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/option.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/option.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/plaza.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/plaza.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/plaza.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/plaza.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/refine.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/refine.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/utils.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/utils.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/utils.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/utils.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic/biharmonic.py... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic/biharmonic.py... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic/main.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic/main.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly/main.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly/main.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly/mixed_codim0.py... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly/mixed_codim0.py... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/custom_kernel/main.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/custom_kernel/main.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/hyperelasticity/hyperelasticity.py... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/hyperelasticity/hyperelasticity.py... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/hyperelasticity/main.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/hyperelasticity/main.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation-io/main.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation-io/main.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation_different_meshes/main.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation_different_meshes/main.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson/main.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson/main.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson/poisson.py... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson/poisson.py... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free/main.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free/main.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free/poisson.py... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free/poisson.py... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/README.md... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/defines.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/dolfinx_common.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/dolfinx_doc.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/IndexMap.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/log.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/math.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/MPI.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Scatterer.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/sort.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Table.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/TimeLogger.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/TimeLogManager.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Timer.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/timing.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/types.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/dolfinx.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/assemble_matrix_impl.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/assemble_scalar_impl.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/assemble_vector_impl.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/assembler.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/Constant.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/CoordinateElement.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/DirichletBC.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/discreteoperators.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/DofMap.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/dofmapbuilder.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/dolfinx_fem.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/ElementDofLayout.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/Expression.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/FiniteElement.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/Form.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/Function.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/FunctionSpace.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/interpolate.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/sparsitybuild.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/traits.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/BoundingBoxTree.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/dolfinx_geometry.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/gjk.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/AdjacencyList.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/dolfinx_graph.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/ordering.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/partition.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/partitioners.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/ADIOS2Writers.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/cells.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/dolfinx_io.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/HDF5Interface.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/vtk_utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/VTKFile.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_function.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_mesh.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/XDMFFile.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/dolfinx_la.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/matrix_csr_impl.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/MatrixCSR.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/petsc.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/petsc.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/slepc.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/SparsityPattern.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/Vector.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/cell_types.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/dolfinx_mesh.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/generation.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/Geometry.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/graphbuild.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/Mesh.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/MeshTags.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/permutationcomputation.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/Topology.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/topologycomputation.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/nls/dolfinx_nls.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/nls/NewtonSolver.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/dolfinx_refinement.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/interval.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/option.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/plaza.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/refine.h... Generating file documentation... Generating docs for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/DofMap.h... Generating docs for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/utils.h... Generating docs for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/utils.h... Generating docs for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/ADIOS2Writers.h... Generating page documentation... Generating docs for page md__2build_2reproducible-path_2fenics-dolfinx-0_89_80_2cpp_2demo_2README... Generating docs for page todo... Generating group documentation... Generating class documentation... Generating docs for compound HyperElasticProblem... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating docs for compound basix::FiniteElement... Generating docs for namespace dolfinx Generating docs for compound dolfinx::Table... Generating docs for concept dolfinx::scalar... Generating docs for namespace dolfinx::common Generating docs for compound dolfinx::common::IndexMap... Generating docs for compound dolfinx::common::Scatterer... Generating docs for compound dolfinx::common::TimeLogger... Generating docs for compound dolfinx::common::TimeLogManager... Generating docs for compound dolfinx::common::Timer... Generating docs for namespace dolfinx::fem Generating docs for compound dolfinx::fem::Constant... Generating docs for compound dolfinx::fem::CoordinateElement... Generating docs for compound dolfinx::fem::DirichletBC... Generating docs for compound dolfinx::fem::DofMap... Generating docs for compound dolfinx::fem::ElementDofLayout... Generating docs for compound dolfinx::fem::Expression... Generating docs for compound dolfinx::fem::FiniteElement... Generating docs for compound dolfinx::fem::Form... Generating docs for compound dolfinx::fem::Function... Generating docs for compound dolfinx::fem::FunctionSpace... Generating docs for compound dolfinx::fem::integral_data... Generating docs for concept dolfinx::fem::MDSpan... Generating docs for concept dolfinx::fem::DofTransformKernel... Generating docs for concept dolfinx::fem::FEkernel... Generating docs for concept dolfinx::fem::impl::FetchCells... Generating docs for namespace dolfinx::fem::petsc Generating docs for namespace dolfinx::fem::sparsitybuild Generating docs for namespace dolfinx::geometry Generating docs for compound dolfinx::geometry::BoundingBoxTree... Generating docs for compound dolfinx::geometry::PointOwnershipData... Generating docs for namespace dolfinx::graph Generating docs for compound dolfinx::graph::AdjacencyList... Generating docs for namespace dolfinx::graph::build Generating docs for namespace dolfinx::graph::kahip Generating docs for namespace dolfinx::io Generating docs for compound dolfinx::io::ADIOS2Writer... Generating docs for compound dolfinx::io::VTKFile... Generating docs for compound dolfinx::io::XDMFFile... Generating docs for namespace dolfinx::io::cells Generating docs for namespace dolfinx::io::xdmf_function Generating docs for namespace dolfinx::io::xdmf_mesh Generating docs for namespace dolfinx::la Generating docs for compound dolfinx::la::MatrixCSR... Generating docs for compound dolfinx::la::SLEPcEigenSolver... Generating docs for compound dolfinx::la::SparsityPattern... Generating docs for compound dolfinx::la::Vector... Generating docs for concept dolfinx::la::MatSet... Generating docs for namespace dolfinx::la::petsc Generating docs for compound dolfinx::la::petsc::KrylovSolver... Generating docs for compound dolfinx::la::petsc::Matrix... Generating docs for compound dolfinx::la::petsc::Operator... Generating docs for compound dolfinx::la::petsc::Vector... Generating docs for namespace dolfinx::la::petsc::options Generating docs for namespace dolfinx::mesh Generating docs for compound dolfinx::mesh::Geometry... Generating docs for compound dolfinx::mesh::Mesh... Generating docs for compound dolfinx::mesh::MeshTags... Generating docs for compound dolfinx::mesh::Topology... Generating docs for concept dolfinx::mesh::MarkerFn... Generating docs for namespace dolfinx::MPI Generating docs for compound dolfinx::MPI::Comm... Generating docs for compound dolfinx::MPI::dependent_false... Generating docs for namespace dolfinx::nls Generating docs for compound dolfinx::nls::petsc::NewtonSolver... Generating docs for namespace dolfinx::refinement Generating docs for namespace dolfinx::refinement::plaza Generating graph info page... Generating directory documentation... Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/custom_kernel Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/hyperelasticity Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation-io Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation_different_meshes Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/nls Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement Generating index page... Generating main page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating graphical class hierarchy... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class dolfinx::io::ADIOS2Writer Generating XML output for class dolfinx::graph::AdjacencyList Generating XML output for class dolfinx::geometry::BoundingBoxTree Generating XML output for class dolfinx::MPI::Comm Generating XML output for class dolfinx::fem::Constant Generating XML output for class dolfinx::fem::CoordinateElement Generating XML output for class dolfinx::MPI::dependent_false Generating XML output for class dolfinx::fem::DirichletBC Generating XML output for class dolfinx::fem::DofMap Generating XML output for class dolfinx::fem::ElementDofLayout Generating XML output for class dolfinx::fem::Expression Generating XML output for class dolfinx::io::FidesWriter Generating XML output for class basix::FiniteElement Generating XML output for class dolfinx::fem::FiniteElement Generating XML output for class dolfinx::fem::Form Generating XML output for class dolfinx::fem::Function Generating XML output for class dolfinx::fem::FunctionSpace Generating XML output for class dolfinx::mesh::Geometry Generating XML output for class HyperElasticProblem Generating XML output for class dolfinx::common::IndexMap Generating XML output for class dolfinx::fem::integral_data Generating XML output for class dolfinx::la::petsc::KrylovSolver Generating XML output for class dolfinx::la::petsc::Matrix Generating XML output for class dolfinx::la::MatrixCSR Generating XML output for class dolfinx::mesh::Mesh Generating XML output for class dolfinx::mesh::MeshTags Generating XML output for class dolfinx::nls::petsc::NewtonSolver Generating XML output for class dolfinx::la::petsc::Operator Generating XML output for class dolfinx::geometry::PointOwnershipData Generating XML output for class dolfinx::scalar_value_type Generating XML output for class dolfinx::scalar_value_type< T, std::void_t< typename T::value_type > > Generating XML output for class dolfinx::common::Scatterer Generating XML output for class dolfinx::la::SLEPcEigenSolver Generating XML output for class dolfinx::la::SparsityPattern Generating XML output for class dolfinx::Table Generating XML output for class dolfinx::common::TimeLogger Generating XML output for class dolfinx::common::TimeLogManager Generating XML output for class dolfinx::common::Timer Generating XML output for class dolfinx::mesh::Topology Generating XML output for class dolfinx::la::petsc::Vector Generating XML output for class dolfinx::la::Vector Generating XML output for class dolfinx::io::VTKFile Generating XML output for class dolfinx::io::VTXWriter Generating XML output for class dolfinx::io::XDMFFile Generating XML output for concept dolfinx::fem::DofTransformKernel Generating XML output for concept dolfinx::fem::FEkernel Generating XML output for concept dolfinx::fem::impl::FetchCells Generating XML output for concept dolfinx::fem::MDSpan Generating XML output for concept dolfinx::la::MatSet Generating XML output for concept dolfinx::mesh::MarkerFn Generating XML output for concept dolfinx::scalar Generating XML output for namespace @104 Generating XML output for namespace @108 Generating XML output for namespace @110 Generating XML output for namespace @112 Generating XML output for namespace @117 Generating XML output for namespace @122 Generating XML output for namespace @13 Generating XML output for namespace @33 Generating XML output for namespace @36 Generating XML output for namespace @38 Generating XML output for namespace @4 Generating XML output for namespace @44 Generating XML output for namespace @63 Generating XML output for namespace @67 Generating XML output for namespace @69 Generating XML output for namespace @71 Generating XML output for namespace @74 Generating XML output for namespace @78 Generating XML output for namespace @80 Generating XML output for namespace @84 Generating XML output for namespace basix Generating XML output for namespace biharmonic Generating XML output for namespace dolfinx Generating XML output for namespace dolfinx::common Generating XML output for namespace dolfinx::fem Generating XML output for namespace dolfinx::fem::impl Generating XML output for namespace dolfinx::fem::petsc Generating XML output for namespace dolfinx::fem::sparsitybuild Generating XML output for namespace dolfinx::geometry Generating XML output for namespace dolfinx::geometry::impl Generating XML output for namespace dolfinx::geometry::impl_bb Generating XML output for namespace dolfinx::geometry::impl_gjk Generating XML output for namespace dolfinx::graph Generating XML output for namespace dolfinx::graph::build Generating XML output for namespace dolfinx::graph::kahip Generating XML output for namespace dolfinx::graph::parmetis Generating XML output for namespace dolfinx::graph::scotch Generating XML output for namespace dolfinx::io Generating XML output for namespace dolfinx::io::adios2_writer Generating XML output for namespace dolfinx::io::cells Generating XML output for namespace dolfinx::io::hdf5 Generating XML output for namespace dolfinx::io::impl Generating XML output for namespace dolfinx::io::impl_adios2 Generating XML output for namespace dolfinx::io::impl_fides Generating XML output for namespace dolfinx::io::impl_vtx Generating XML output for namespace dolfinx::io::xdmf_function Generating XML output for namespace dolfinx::io::xdmf_mesh Generating XML output for namespace dolfinx::io::xdmf_utils Generating XML output for namespace dolfinx::la Generating XML output for namespace dolfinx::la::impl Generating XML output for namespace dolfinx::la::petsc Generating XML output for namespace dolfinx::la::petsc::options Generating XML output for namespace dolfinx::math Generating XML output for namespace dolfinx::mesh Generating XML output for namespace dolfinx::mesh::impl Generating XML output for namespace dolfinx::MPI Generating XML output for namespace dolfinx::nls Generating XML output for namespace dolfinx::nls::petsc Generating XML output for namespace dolfinx::refinement Generating XML output for namespace dolfinx::refinement::impl Generating XML output for namespace dolfinx::refinement::interval Generating XML output for namespace dolfinx::refinement::plaza Generating XML output for namespace dolfinx::refinement::plaza::impl Generating XML output for namespace hyperelasticity Generating XML output for namespace linalg Generating XML output for namespace mixed_codim0 Generating XML output for namespace poisson Generating XML output for namespace pugi Generating XML output for namespace std Generating XML output for file biharmonic.py Generating XML output for file mixed_codim0.py Generating XML output for file main.cpp Generating XML output for file main.cpp Generating XML output for file main.cpp Generating XML output for file main.cpp Generating XML output for file main.cpp Generating XML output for file main.cpp Generating XML output for file main.cpp Generating XML output for file main.cpp Generating XML output for file hyperelasticity.py Generating XML output for file poisson.py Generating XML output for file poisson.py Generating XML output for file README.md Generating XML output for file defines.cpp Generating XML output for file defines.h Generating XML output for file dolfinx_common.h Generating XML output for file dolfinx_doc.h Generating XML output for file IndexMap.cpp Generating XML output for file IndexMap.h Generating XML output for file log.cpp Generating XML output for file log.h Generating XML output for file math.h Generating XML output for file MPI.cpp Generating XML output for file MPI.h Generating XML output for file Scatterer.h Generating XML output for file sort.h Generating XML output for file Table.cpp Generating XML output for file Table.h Generating XML output for file TimeLogger.cpp Generating XML output for file TimeLogger.h Generating XML output for file TimeLogManager.cpp Generating XML output for file TimeLogManager.h Generating XML output for file Timer.cpp Generating XML output for file Timer.h Generating XML output for file timing.cpp Generating XML output for file timing.h Generating XML output for file types.h Generating XML output for file dolfinx.h Generating XML output for file assemble_matrix_impl.h Generating XML output for file assemble_scalar_impl.h Generating XML output for file assemble_vector_impl.h Generating XML output for file assembler.h Generating XML output for file Constant.h Generating XML output for file CoordinateElement.cpp Generating XML output for file CoordinateElement.h Generating XML output for file DirichletBC.cpp Generating XML output for file DirichletBC.h Generating XML output for file discreteoperators.h Generating XML output for file DofMap.cpp Generating XML output for file DofMap.h Generating XML output for file dofmapbuilder.cpp Generating XML output for file dofmapbuilder.h Generating XML output for file dolfinx_fem.h Generating XML output for file ElementDofLayout.cpp Generating XML output for file ElementDofLayout.h Generating XML output for file Expression.h Generating XML output for file FiniteElement.cpp Generating XML output for file FiniteElement.h Generating XML output for file Form.h Generating XML output for file Function.h Generating XML output for file FunctionSpace.h Generating XML output for file interpolate.h Generating XML output for file sparsitybuild.cpp Generating XML output for file sparsitybuild.h Generating XML output for file traits.h Generating XML output for file BoundingBoxTree.h Generating XML output for file dolfinx_geometry.h Generating XML output for file gjk.h Generating XML output for file utils.h Generating XML output for file utils.h Generating XML output for file utils.h Generating XML output for file utils.h Generating XML output for file utils.h Generating XML output for file utils.h Generating XML output for file AdjacencyList.h Generating XML output for file dolfinx_graph.h Generating XML output for file ordering.cpp Generating XML output for file ordering.h Generating XML output for file partition.cpp Generating XML output for file partition.h Generating XML output for file partitioners.cpp Generating XML output for file partitioners.h Generating XML output for file ADIOS2Writers.cpp Generating XML output for file ADIOS2Writers.h Generating XML output for file cells.cpp Generating XML output for file cells.h Generating XML output for file dolfinx_io.h Generating XML output for file HDF5Interface.cpp Generating XML output for file HDF5Interface.h Generating XML output for file vtk_utils.cpp Generating XML output for file vtk_utils.h Generating XML output for file VTKFile.cpp Generating XML output for file VTKFile.h Generating XML output for file xdmf_function.cpp Generating XML output for file xdmf_function.h Generating XML output for file xdmf_mesh.cpp Generating XML output for file xdmf_mesh.h Generating XML output for file xdmf_utils.cpp Generating XML output for file xdmf_utils.h Generating XML output for file XDMFFile.cpp Generating XML output for file XDMFFile.h Generating XML output for file dolfinx_la.h Generating XML output for file matrix_csr_impl.h Generating XML output for file MatrixCSR.h Generating XML output for file petsc.cpp Generating XML output for file petsc.cpp Generating XML output for file petsc.h Generating XML output for file petsc.h Generating XML output for file slepc.cpp Generating XML output for file slepc.h Generating XML output for file SparsityPattern.cpp Generating XML output for file SparsityPattern.h Generating XML output for file Vector.h Generating XML output for file cell_types.cpp Generating XML output for file cell_types.h Generating XML output for file dolfinx_mesh.h Generating XML output for file generation.h Generating XML output for file Geometry.h Generating XML output for file graphbuild.cpp Generating XML output for file graphbuild.h Generating XML output for file Mesh.h Generating XML output for file MeshTags.h Generating XML output for file permutationcomputation.cpp Generating XML output for file permutationcomputation.h Generating XML output for file Topology.cpp Generating XML output for file Topology.h Generating XML output for file topologycomputation.cpp Generating XML output for file topologycomputation.h Generating XML output for file utils.cpp Generating XML output for file utils.cpp Generating XML output for file utils.cpp Generating XML output for file dolfinx_nls.h Generating XML output for file NewtonSolver.cpp Generating XML output for file NewtonSolver.h Generating XML output for file dolfinx_refinement.h Generating XML output for file interval.h Generating XML output for file option.h Generating XML output for file plaza.cpp Generating XML output for file plaza.h Generating XML output for file refine.h Generating XML output for page md__2build_2reproducible-path_2fenics-dolfinx-0_89_80_2cpp_2demo_2README Generating XML output for page todo Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/custom_kernel/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/hyperelasticity/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation-io/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation_different_meshes/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/nls/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/ Generating XML output for the main page Running plantuml with JAVA... Running dot... Generating dot graphs using 21 parallel threads... 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(cd python/doc; \ mkdir -p build/pkgconfig; \ cp /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx_real.pc build/pkgconfig; \ sed "s|prefix=/usr|prefix=/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr|" -i build/pkgconfig/dolfinx_real.pc; \ PYTHONPATH=/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/python3.12/dist-packages \ PKG_CONFIG_PATH=`pwd`/build/pkgconfig:${PKG_CONFIG_PATH} \ LD_LIBRARY_PATH=/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/:${LD_LIBRARY_PATH} \ XDG_CACHE_HOME=`pwd`/build \ RDMAV_FORK_SAFE=1 \ python3 -m sphinx -W -b html source/ .pybuild/html/) Running Sphinx v7.4.7 Matplotlib created a temporary cache directory at /tmp/matplotlib-y_v01izm because the default path (/nonexistent/first-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. TNT degree 2 error: 0.0029421918345155706 TNT degree 2 error: 0.00017118942553986642 TNT degree 3 error: 8.385106828737192e-06 TNT degree 4 error: 3.394990183622027e-07 TNT degree 5 error: 1.252824324455349e-08 TNT degree 6 error: 4.2427477009663855e-10 TNT degree 7 error: 1.9794047713048823e-10 TNT degree 8 error: 2.9565584931541024e-10 Q degree 1 error: 0.04076382001057708 Q degree 2 error: 0.0029182213395268987 Q degree 3 error: 0.00015944660110819704 Q degree 4 error: 7.937421445108184e-06 Q degree 5 error: 3.1034668624613837e-07 Q degree 6 error: 1.1356498987237013e-08 Q degree 7 error: 3.4161428239866125e-10 Q degree 8 error: 6.19100847885188e-11 Computed L2 interpolation error (equispaced): 0.01588506513458592 Computed L2 interpolation error (gll_warped): 0.0015137108623519335 loading translations [en]... done making output directory... done [autosummary] generating autosummary for: api.rst, contributing.rst, demos.rst, demos/demo_axis.md, demos/demo_biharmonic.md, demos/demo_cahn-hilliard.md, demos/demo_elasticity.md, demos/demo_gmsh.md, demos/demo_half_loaded_waveguide.md, demos/demo_hdg.md, ..., demos/demo_pyvista.md, demos/demo_scattering_boundary_conditions.md, demos/demo_static-condensation.md, demos/demo_stokes.md, demos/demo_tnt-elements.md, demos/demo_types.md, developer.rst, index.rst, installation.rst, styleguide_cpp.rst [autosummary] generating autosummary for: /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.common.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.cpp.common.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.cpp.fem.petsc.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.cpp.fem.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.cpp.geometry.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.cpp.graph.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.cpp.io.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.cpp.la.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.cpp.log.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.cpp.mesh.rst, ..., /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.geometry.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.graph.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.io.gmshio.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.io.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.jit.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.la.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.mesh.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.nls.petsc.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.pkgconfig.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.plot.rst myst v4.0.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions={'dollarmath'}, disable_syntax=[], all_links_external=False, links_external_new_tab=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=3, heading_slug_func=None, html_meta={}, footnote_sort=True, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True) building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 29 source files that are out of date updating environment: [new config] 54 added, 0 changed, 0 removed reading sources... [ 2%] api reading sources... [ 4%] contributing reading sources... [ 6%] demos reading sources... [ 7%] demos/demo_axis reading sources... [ 9%] demos/demo_biharmonic reading sources... [ 11%] demos/demo_cahn-hilliard reading sources... [ 13%] demos/demo_elasticity reading sources... [ 15%] demos/demo_gmsh reading sources... [ 17%] demos/demo_half_loaded_waveguide reading sources... [ 19%] demos/demo_hdg reading sources... [ 20%] demos/demo_helmholtz reading sources... [ 22%] demos/demo_interpolation-io reading sources... [ 24%] demos/demo_lagrange_variants reading sources... [ 26%] demos/demo_mixed-poisson reading sources... [ 28%] demos/demo_navier-stokes reading sources... [ 30%] demos/demo_pml reading sources... [ 31%] demos/demo_poisson reading sources... [ 33%] demos/demo_poisson_matrix_free reading sources... [ 35%] demos/demo_pyamg reading sources... [ 37%] demos/demo_pyvista reading sources... [ 39%] demos/demo_scattering_boundary_conditions reading sources... [ 41%] demos/demo_static-condensation reading sources... [ 43%] demos/demo_stokes reading sources... [ 44%] demos/demo_tnt-elements reading sources... [ 46%] demos/demo_types reading sources... [ 48%] developer reading sources... [ 50%] generated/dolfinx.common reading sources... [ 52%] generated/dolfinx.cpp.common reading sources... [ 54%] generated/dolfinx.cpp.fem reading sources... [ 56%] generated/dolfinx.cpp.fem.petsc reading sources... [ 57%] generated/dolfinx.cpp.geometry reading sources... [ 59%] generated/dolfinx.cpp.graph reading sources... [ 61%] generated/dolfinx.cpp.io reading sources... [ 63%] generated/dolfinx.cpp.la reading sources... [ 65%] generated/dolfinx.cpp.log reading sources... [ 67%] generated/dolfinx.cpp.mesh reading sources... [ 69%] generated/dolfinx.cpp.nls reading sources... [ 70%] generated/dolfinx.cpp.nls.petsc reading sources... [ 72%] generated/dolfinx.cpp.refinement reading sources... [ 74%] generated/dolfinx.fem reading sources... [ 76%] generated/dolfinx.fem.petsc reading sources... [ 78%] generated/dolfinx.geometry reading sources... [ 80%] generated/dolfinx.graph reading sources... [ 81%] generated/dolfinx.io reading sources... [ 83%] generated/dolfinx.io.gmshio reading sources... [ 85%] generated/dolfinx.jit reading sources... [ 87%] generated/dolfinx.la reading sources... [ 89%] generated/dolfinx.mesh reading sources... [ 91%] generated/dolfinx.nls.petsc reading sources... [ 93%] generated/dolfinx.pkgconfig reading sources... [ 94%] generated/dolfinx.plot reading sources... [ 96%] index reading sources... [ 98%] installation reading sources... [100%] styleguide_cpp looking for now-outdated files... none found pickling environment... done checking consistency... /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_axis.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_axis /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_biharmonic.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_biharmonic /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_cahn-hilliard.md: document is referenced in multiple toctrees: ['demos', 'demos', 'demos'], selecting: demos <- demos/demo_cahn-hilliard /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_elasticity.md: document is referenced in multiple toctrees: ['demos', 'demos', 'demos'], selecting: demos <- demos/demo_elasticity /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_gmsh.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_gmsh /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_half_loaded_waveguide.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_half_loaded_waveguide /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_hdg.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_hdg /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_helmholtz.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_helmholtz /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_interpolation-io.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_interpolation-io /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_lagrange_variants.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_lagrange_variants /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_mixed-poisson.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_mixed-poisson /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_navier-stokes.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_navier-stokes /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_pml.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_pml /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_poisson.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_poisson /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_pyamg.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_pyamg /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_pyvista.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_pyvista /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_scattering_boundary_conditions.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_scattering_boundary_conditions /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_static-condensation.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_static-condensation /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_stokes.md: document is referenced in multiple toctrees: ['demos', 'demos', 'demos'], selecting: demos <- demos/demo_stokes /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_tnt-elements.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_tnt-elements /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_types.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_types done preparing documents... done copying assets... copying downloadable files... [ 6%] demos/demo_biharmonic.py copying downloadable files... [ 12%] demos/demo_cahn-hilliard.py copying downloadable files... [ 18%] demos/demo_elasticity.py copying downloadable files... [ 24%] demos/demo_gmsh.py copying downloadable files... [ 29%] demos/demo_hdg.py copying downloadable files... [ 35%] demos/demo_interpolation-io.py copying downloadable files... [ 41%] demos/demo_lagrange_variants.py copying downloadable files... [ 47%] demos/demo_mixed-poisson.py copying downloadable files... [ 53%] demos/demo_mixed-poisson.ipynb copying downloadable files... [ 59%] demos/demo_navier-stokes.py copying downloadable files... [ 65%] demos/demo_poisson.py copying downloadable files... [ 71%] demos/demo_poisson_matrix_free.py copying downloadable files... [ 76%] demos/demo_poisson_matrix_free.ipynb copying downloadable files... [ 82%] demos/demo_pyamg.py copying downloadable files... [ 88%] demos/demo_stokes.py copying downloadable files... [ 94%] demos/demo_tnt-elements.py copying downloadable files... [100%] demos/demo_types.py copying static files... done copying extra files... done copying assets: done writing output... [ 2%] api writing output... [ 4%] contributing writing output... [ 6%] demos writing output... [ 7%] demos/demo_axis writing output... [ 9%] demos/demo_biharmonic writing output... [ 11%] demos/demo_cahn-hilliard writing output... [ 13%] demos/demo_elasticity writing output... [ 15%] demos/demo_gmsh writing output... [ 17%] demos/demo_half_loaded_waveguide writing output... [ 19%] demos/demo_hdg writing output... [ 20%] demos/demo_helmholtz writing output... [ 22%] demos/demo_interpolation-io writing output... [ 24%] demos/demo_lagrange_variants writing output... [ 26%] demos/demo_mixed-poisson writing output... [ 28%] demos/demo_navier-stokes writing output... [ 30%] demos/demo_pml writing output... [ 31%] demos/demo_poisson writing output... [ 33%] demos/demo_poisson_matrix_free writing output... [ 35%] demos/demo_pyamg writing output... [ 37%] demos/demo_pyvista writing output... [ 39%] demos/demo_scattering_boundary_conditions writing output... [ 41%] demos/demo_static-condensation writing output... [ 43%] demos/demo_stokes writing output... [ 44%] demos/demo_tnt-elements writing output... [ 46%] demos/demo_types writing output... [ 48%] developer writing output... [ 50%] generated/dolfinx.common writing output... [ 52%] generated/dolfinx.cpp.common writing output... [ 54%] generated/dolfinx.cpp.fem writing output... [ 56%] generated/dolfinx.cpp.fem.petsc writing output... [ 57%] generated/dolfinx.cpp.geometry writing output... [ 59%] generated/dolfinx.cpp.graph writing output... [ 61%] generated/dolfinx.cpp.io writing output... [ 63%] generated/dolfinx.cpp.la writing output... [ 65%] generated/dolfinx.cpp.log writing output... [ 67%] generated/dolfinx.cpp.mesh writing output... [ 69%] generated/dolfinx.cpp.nls writing output... [ 70%] generated/dolfinx.cpp.nls.petsc writing output... [ 72%] generated/dolfinx.cpp.refinement writing output... [ 74%] generated/dolfinx.fem writing output... [ 76%] generated/dolfinx.fem.petsc writing output... [ 78%] generated/dolfinx.geometry writing output... [ 80%] generated/dolfinx.graph writing output... [ 81%] generated/dolfinx.io writing output... [ 83%] generated/dolfinx.io.gmshio writing output... [ 85%] generated/dolfinx.jit writing output... [ 87%] generated/dolfinx.la writing output... [ 89%] generated/dolfinx.mesh writing output... [ 91%] generated/dolfinx.nls.petsc writing output... [ 93%] generated/dolfinx.pkgconfig writing output... [ 94%] generated/dolfinx.plot writing output... [ 96%] index writing output... [ 98%] installation writing output... [100%] styleguide_cpp generating indices... genindex py-modindex done highlighting module code... [ 3%] dolfinx.common highlighting module code... [ 7%] dolfinx.cpp.common highlighting module code... [ 10%] dolfinx.cpp.fem highlighting module code... [ 14%] dolfinx.cpp.geometry highlighting module code... [ 17%] dolfinx.cpp.graph highlighting module code... [ 21%] dolfinx.cpp.io highlighting module code... [ 24%] dolfinx.cpp.la highlighting module code... [ 28%] dolfinx.cpp.log highlighting module code... [ 31%] dolfinx.cpp.mesh highlighting module code... [ 34%] dolfinx.cpp.nls.petsc highlighting module code... [ 38%] dolfinx.cpp.refinement highlighting module code... [ 41%] dolfinx.fem highlighting module code... [ 45%] dolfinx.fem.assemble highlighting module code... [ 48%] dolfinx.fem.bcs highlighting module code... [ 52%] dolfinx.fem.dofmap highlighting module code... [ 55%] dolfinx.fem.element highlighting module code... [ 59%] dolfinx.fem.forms highlighting module code... [ 62%] dolfinx.fem.function highlighting module code... [ 66%] dolfinx.fem.petsc highlighting module code... [ 69%] dolfinx.geometry highlighting module code... [ 72%] dolfinx.graph highlighting module code... [ 76%] dolfinx.io.gmshio highlighting module code... [ 79%] dolfinx.io.utils highlighting module code... [ 83%] dolfinx.jit highlighting module code... [ 86%] dolfinx.la highlighting module code... [ 90%] dolfinx.mesh highlighting module code... [ 93%] dolfinx.nls.petsc highlighting module code... [ 97%] dolfinx.pkgconfig highlighting module code... [100%] dolfinx.plot writing additional pages... search done copying images... [ 17%] demos/demo_lagrange_variants_equispaced_10.png copying images... [ 33%] demos/demo_lagrange_variants_gll_10.png copying images... [ 50%] demos/demo_lagrange_variants_interpolation_equispaced.png copying images... [ 67%] demos/demo_lagrange_variants_interpolation_gll_warped.png copying images... [ 83%] demos/demo_tnt-elements_degrees_vs_error.png copying images... [100%] demos/demo_tnt-elements_ndofs_vs_error.png dumping search index in English (code: en)... done dumping object inventory... done build succeeded. The HTML pages are in .pybuild/html. dh_numpy3 -i make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' debian/rules override_dh_install-arch make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_install -a sed "s/set(CMAKE_IMPORT_FILE_VERSION 1)/set(CMAKE_IMPORT_FILE_VERSION 1)\n\nif(PETSC_SCALAR_COMPLEX)\n set(LIB_NAME_EXT \"_complex\")\nelse()\n set(LIB_NAME_EXT \"_real\")\nendif()/; \ s/libdolfinx_real.so/libdolfinx\${LIB_NAME_EXT}.so/g" \ -i debian/libdolfinx-dev/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets-relwithdebinfo.cmake make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_install -O--buildsystem=cmake -Nlibdolfinx-dev -Nlibdolfinx-real-dev -Nlibdolfinx-complex-dev -Nlibdolfinx-real0.9 -Nlibdolfinx-complex0.9 -Npython3-dolfinx -Npython3-dolfinx-real -Npython3-dolfinx-complex dh_installdocs -O--buildsystem=cmake dh_installdocs: warning: Cannot auto-detect main package for dolfinx-doc. If the default is wrong, please use --doc-main-package dh_sphinxdoc -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake debian/rules override_dh_python3-arch make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_python3 -a dh_numpy3 -a mkdir -p debian/python3-dolfinx-real//usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib mv debian/python3-dolfinx-real/usr/lib/python3 debian/python3-dolfinx-real//usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib rm -rf debian/python3-dolfinx-real//usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/python3/dist-packages/dolfinx_utils mkdir -p debian/python3-dolfinx-complex//usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib mv debian/python3-dolfinx-complex/usr/lib/python3 debian/python3-dolfinx-complex//usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib rm -rf debian/python3-dolfinx-complex//usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/python3/dist-packages/dolfinx_utils make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_python3 -O--buildsystem=cmake -Nlibdolfinx-dev -Nlibdolfinx-real-dev -Nlibdolfinx-complex-dev -Nlibdolfinx-real0.9 -Nlibdolfinx-complex0.9 -Npython3-dolfinx -Npython3-dolfinx-real -Npython3-dolfinx-complex E: dh_python3 dh_python3:198: no package to act on (python3-foo or one with ${python3:Depends} in Depends) dh_installsystemduser -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_compress -X.py -X.cpp -X.h -X.pdf -X.ufl make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake debian/rules override_dh_dwz make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_dwz -Xcpp.cpython make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' debian/rules override_dh_strip make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_strip --package=libdolfinx-real0.9 -Xcomplex -Xpython dh_strip --package=libdolfinx-complex0.9 -Xreal -Xpython dh_strip --package=python3-dolfinx-real make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_makeshlibs -a -O--buildsystem=cmake debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_shlibdeps --dpkg-shlibdeps-params=--ignore-missing-info make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_installdeb -O--buildsystem=cmake debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' echo "python3-petsc4py-real:Depends=python3-petsc4py, python3-slepc4py, python3-petsc4py-real (>= 3.22), python3-petsc4py-real (<< 3.23), python3-slepc4py-real (>= 3.22), python3-slepc4py-real (<< 3.23)" >> debian/python3-dolfinx-real.substvars echo "python3-petsc4py-complex:Depends=python3-petsc4py, python3-slepc4py, python3-petsc4py-complex (>= 3.22), python3-petsc4py-complex (<< 3.23), python3-slepc4py-complex (>= 3.22), python3-slepc4py-complex (<< 3.23)" >> debian/python3-dolfinx-complex.substvars echo "python-petsc4py-alt:Depends=python3-petsc4py, python3-slepc4py, python3-petsc4py-real (>= 3.22), python3-petsc4py-real (<< 3.23), python3-slepc4py-real (>= 3.22), python3-slepc4py-real (<< 3.23)" >> debian/libdolfinx-dev.substvars dh_gencontrol -- -Vpetsc:Depends="libpetsc-real3.22-dev, libslepc-real3.22-dev" -Vpetsc-complex:Depends="libpetsc-complex3.22-dev, libslepc-complex3.22-dev" -Vdolfinx:Next-Upstream-Version=1:0.10~ \ -Vnanobind:Upstream-Version=2.2 -Vnanobind:Next-Upstream-Version=3 dpkg-gencontrol: warning: package dolfinx-doc: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package dolfinx-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-dev: substitution variable ${python-petsc4py-alt:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-complex0.9: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-real-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-real0.9: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-complex-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-complex0.9: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-real0.9: substitution variable ${python3:Depends} unused, but is defined make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'libdolfinx-dev' in '../libdolfinx-dev_0.9.0-5_amd64.deb'. dpkg-deb: building package 'libdolfinx-real0.9-dbgsym' in '../libdolfinx-real0.9-dbgsym_0.9.0-5_amd64.deb'. dpkg-deb: building package 'libdolfinx-real-dev' in '../libdolfinx-real-dev_0.9.0-5_amd64.deb'. dpkg-deb: building package 'libdolfinx-complex0.9-dbgsym' in '../libdolfinx-complex0.9-dbgsym_0.9.0-5_amd64.deb'. dpkg-deb: building package 'libdolfinx-complex-dev' in '../libdolfinx-complex-dev_0.9.0-5_amd64.deb'. dpkg-deb: building package 'python3-dolfinx' in '../python3-dolfinx_0.9.0-5_amd64.deb'. dpkg-deb: building package 'dolfinx-doc' in '../dolfinx-doc_0.9.0-5_all.deb'. dpkg-deb: building package 'libdolfinx-complex0.9' in '../libdolfinx-complex0.9_0.9.0-5_amd64.deb'. dpkg-deb: building package 'python3-dolfinx-real' in '../python3-dolfinx-real_0.9.0-5_amd64.deb'. dpkg-deb: building package 'python3-dolfinx-complex' in '../python3-dolfinx-complex_0.9.0-5_amd64.deb'. dpkg-deb: building package 'libdolfinx-real0.9' in '../libdolfinx-real0.9_0.9.0-5_amd64.deb'. dpkg-genbuildinfo --build=binary -O../fenics-dolfinx_0.9.0-5_amd64.buildinfo dpkg-genchanges --build=binary -O../fenics-dolfinx_0.9.0-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2837077 and its subdirectories I: Current time: Tue Dec 3 14:27:18 -12 2024 I: pbuilder-time-stamp: 1733279238 Wed Dec 4 02:27:20 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Wed Dec 4 02:27:20 UTC 2024 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Wed Dec 4 04:27:14 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Wed Dec 4 04:27:15 UTC 2024 I: fenics-dolfinx_0.9.0-5_amd64.changes: Format: 1.8 Date: Mon, 02 Dec 2024 16:55:08 +0100 Source: fenics-dolfinx Binary: dolfinx-doc libdolfinx-complex-dev libdolfinx-complex0.9 libdolfinx-complex0.9-dbgsym libdolfinx-dev libdolfinx-real-dev libdolfinx-real0.9 libdolfinx-real0.9-dbgsym python3-dolfinx python3-dolfinx-complex python3-dolfinx-real Architecture: all amd64 Version: 1:0.9.0-5 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Drew Parsons Description: dolfinx-doc - Documentation and demo programs for DOLFIN libdolfinx-complex-dev - Shared links and header files for DOLFIN (complex numbers) libdolfinx-complex0.9 - Shared libraries for DOLFIN libdolfinx-dev - Shared links and header files for DOLFIN libdolfinx-real-dev - Shared links and header files for DOLFIN (real numbers) libdolfinx-real0.9 - Shared libraries for DOLFIN python3-dolfinx - Python interface for DOLFIN (Python 3) python3-dolfinx-complex - Python interface for DOLFIN (Python 3) python3-dolfinx-real - Python interface for DOLFIN (Python 3) Changes: fenics-dolfinx (1:0.9.0-5) unstable; urgency=medium . * skip test_compare_solvers on ppc64 same as mips64el * debian/tests: skip demo_hdg in demo tests. It is very slow (even when it passes) and causes time-out failures. Checksums-Sha1: 6b26217c569fc49e8aa93ec451968a36340a7e79 1239072 dolfinx-doc_0.9.0-5_all.deb 5b795adbc99e1c847fe1bd40b05d08afd038a356 25760 fenics-dolfinx_0.9.0-5_amd64.buildinfo d5c344fbaf32cdf4e2a5fb83b3f5fa034b8270a2 48528 libdolfinx-complex-dev_0.9.0-5_amd64.deb 7aad06611019de78db65c8f8d93986987e17ae69 11431064 libdolfinx-complex0.9-dbgsym_0.9.0-5_amd64.deb 0f9726bc48ffede0aea8ebc0e6775f4d63cd71ab 575856 libdolfinx-complex0.9_0.9.0-5_amd64.deb 6bf1963aadc5fed5fe4d42c7d16a24ba1eff4256 201564 libdolfinx-dev_0.9.0-5_amd64.deb 5ffff614d71d9c7e2a5bb8f0a1178dd2f927e122 48528 libdolfinx-real-dev_0.9.0-5_amd64.deb 1e3ecd812f22572be8877a2e254f279c5cd48d37 11429156 libdolfinx-real0.9-dbgsym_0.9.0-5_amd64.deb db688de590d52e8b9274581dc887ba8a268fe14f 576084 libdolfinx-real0.9_0.9.0-5_amd64.deb 4a9a42f558d4eacf19aec17745f69f883d726cb9 1347028 python3-dolfinx-complex_0.9.0-5_amd64.deb 2109c31df55d5fd1e4ad0b5ac5c6c1425ff5421c 1346360 python3-dolfinx-real_0.9.0-5_amd64.deb d13d202fea396ee6b24d696c6c47aa3271bb471d 49864 python3-dolfinx_0.9.0-5_amd64.deb Checksums-Sha256: 85ddaf5431b3ab883b869ba86bc4681996219bbb1795355ef70a340ad4166462 1239072 dolfinx-doc_0.9.0-5_all.deb f90542d2c8e669fa89f5ea8577b947aa990582ebca36c7af1dfbf3231e03313d 25760 fenics-dolfinx_0.9.0-5_amd64.buildinfo defc80cebd859b27e139599cb8f601b905a1a71715886612efb37be973b11f4b 48528 libdolfinx-complex-dev_0.9.0-5_amd64.deb c9b4cea1ed2a36bfb45c46e5b6b12f7b3866c1795e9b0c812c12434fbb60da2f 11431064 libdolfinx-complex0.9-dbgsym_0.9.0-5_amd64.deb 3343c4023b1b9fe2e2688485e075b15cec73f2c652f7f9ac292b4c0acf993c3d 575856 libdolfinx-complex0.9_0.9.0-5_amd64.deb 42c0064e00512919591b7e2e9bc5f7e4b43b8178768a76fd9b156aa5e7802d81 201564 libdolfinx-dev_0.9.0-5_amd64.deb 275419745835360602685d9877f6b806f919532eba7cac7eed78f8a92c0adec3 48528 libdolfinx-real-dev_0.9.0-5_amd64.deb d141c6d98223386bc92b48ffdfe84845a391888015b3e63911f04d58c7f107b8 11429156 libdolfinx-real0.9-dbgsym_0.9.0-5_amd64.deb 0b790cfea266090498454168a385bf227c189d6f25d14ac8f8ccbe22e6f4ff70 576084 libdolfinx-real0.9_0.9.0-5_amd64.deb 2479f287df650d884646b8ad4c6e489563316cee2f582a16b8659280c7443471 1347028 python3-dolfinx-complex_0.9.0-5_amd64.deb f54d6ac66cab07f8daaf62cbc2b5f4eec6ac7d73f8c39b1442e5bf560db51f9b 1346360 python3-dolfinx-real_0.9.0-5_amd64.deb bb54ea62b8b82c3d5777073b4a1431880994d56088e71338736415276fe99ee5 49864 python3-dolfinx_0.9.0-5_amd64.deb Files: 57fadb8750fb51dd9373040f47965825 1239072 doc optional dolfinx-doc_0.9.0-5_all.deb 446d08baf09b1c96244c46e606f25e31 25760 math optional fenics-dolfinx_0.9.0-5_amd64.buildinfo d09e4edbc0a57eb693d2953257b710cf 48528 libdevel optional libdolfinx-complex-dev_0.9.0-5_amd64.deb e9e43f83dfddfd464545c581e7c0b78b 11431064 debug optional libdolfinx-complex0.9-dbgsym_0.9.0-5_amd64.deb 5347e41969521594dc98762016665a55 575856 libs optional libdolfinx-complex0.9_0.9.0-5_amd64.deb 93e666b13b00873b7983019ba9027817 201564 libdevel optional libdolfinx-dev_0.9.0-5_amd64.deb 2695bc154d5c2f05cefec6728c759bd8 48528 libdevel optional libdolfinx-real-dev_0.9.0-5_amd64.deb 435cc1cb4c67cc2baa6edc984ee57a45 11429156 debug optional libdolfinx-real0.9-dbgsym_0.9.0-5_amd64.deb d2644ffaa266675b3cadbe62c066c788 576084 libs optional libdolfinx-real0.9_0.9.0-5_amd64.deb 6fa741a8230b4b493d8f9197a911a1ea 1347028 python optional python3-dolfinx-complex_0.9.0-5_amd64.deb c5119fadd83a9dc87c3e2020a37c4d22 1346360 python optional python3-dolfinx-real_0.9.0-5_amd64.deb 8b07e1640b457e861154aa0444d63802 49864 python optional python3-dolfinx_0.9.0-5_amd64.deb Wed Dec 4 04:27:15 UTC 2024 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Wed Dec 4 14:50:47 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 3 16:27:18 -12 2024 I: pbuilder-time-stamp: 1733286438 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fenics-dolfinx_0.9.0-5.dsc] I: copying [./fenics-dolfinx_0.9.0.orig.tar.gz] I: copying [./fenics-dolfinx_0.9.0-5.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Dec 2 15:56:09 2024 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: issuer "dparsons@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fenics-dolfinx_0.9.0-5.dsc: no acceptable signature found dpkg-source: info: extracting fenics-dolfinx in fenics-dolfinx-0.9.0 dpkg-source: info: unpacking fenics-dolfinx_0.9.0.orig.tar.gz dpkg-source: info: unpacking fenics-dolfinx_0.9.0-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying extra_CXXFLAGS.patch dpkg-source: info: applying python_cmake_module_path.patch dpkg-source: info: applying lib_rename.patch dpkg-source: info: applying python_unit_test_32bit.patch dpkg-source: info: applying docs_local_mathjax.patch dpkg-source: info: applying debian_version_id.patch dpkg-source: info: applying demo_no_vtk_adios2.patch dpkg-source: info: applying adios_config_mpi.patch dpkg-source: info: applying big_endian_skip_adios2_tests.patch dpkg-source: info: applying python_local_license.patch dpkg-source: info: applying pusimp.patch dpkg-source: info: applying drop_Werror.patch dpkg-source: info: applying demo_stokes_mumps_instead_of_superlu_dist.patch dpkg-source: info: applying test_adios2_skip.patch dpkg-source: info: applying unpin_cffi.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/647716/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='0259590c0ce945699a44ceed133519b3' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='647716' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XJiscdJa/pbuilderrc_Xaec --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XJiscdJa/b1 --logfile b1/build.log fenics-dolfinx_0.9.0-5.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/647716/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake, debhelper-compat (= 13), dh-python, gfortran, catch2 (>= 3~), chrpath, libbasix-dev (>= 0.9.0~), python3-basix, libboost-chrono-dev, libboost-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-math-dev, libboost-mpi-dev, libboost-program-options-dev, libboost-serialization-dev, libboost-thread-dev, libboost-timer-dev, libeigen3-dev, libhdf5-mpi-dev, libadios2-mpi-c++11-dev, libpugixml-dev, libsuitesparse-dev, libscotch-dev, libxml2-dev, mpi-default-dev, libpetsc-real-dev, libpetsc-complex-dev, libslepc-real-dev, libslepc-complex-dev, python3-setuptools, pybuild-plugin-pyproject, python3-petsc4py, python3-petsc4py-real, python3-petsc4py-complex, python3-slepc4py, python3-slepc4py-real, python3-slepc4py-complex, pkgconf, python3-all-dev, python3-cffi, python3-ffcx (>= 1:0.9.0~), python3-ffcx (<< 1:0.10.0), python3-ufl (>= 2024.2.0~), python3-mpi4py, python3-nanobind (>= 2.0.0~), python3-numpy (>= 1:1.21~), python3-pip, python3-ply, python3-pytest, python3-pusimp (>= 0.1.1~), python3-requests, python3-scikit-build-core, python3-scipy, python3-sphinx, python3-virtualenv, libspdlog-dev, doxygen, graphviz, libjs-mathjax, libjs-modernizr, python3-jupytext, python3-matplotlib, python3-myst-parser, python3-sphinx-rtd-theme dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19968 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on catch2 (>= 3~); however: Package catch2 is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. pbuilder-satisfydepends-dummy depends on libbasix-dev (>= 0.9.0~); however: Package libbasix-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-basix; however: Package python3-basix is not installed. pbuilder-satisfydepends-dummy depends on libboost-chrono-dev; however: Package libboost-chrono-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-math-dev; however: Package libboost-math-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-mpi-dev; however: Package libboost-mpi-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-serialization-dev; however: Package libboost-serialization-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however: Package libboost-thread-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-timer-dev; however: Package libboost-timer-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-mpi-dev; however: Package libhdf5-mpi-dev is not installed. pbuilder-satisfydepends-dummy depends on libadios2-mpi-c++11-dev; however: Package libadios2-mpi-c++11-dev is not installed. pbuilder-satisfydepends-dummy depends on libpugixml-dev; however: Package libpugixml-dev is not installed. pbuilder-satisfydepends-dummy depends on libsuitesparse-dev; however: Package libsuitesparse-dev is not installed. pbuilder-satisfydepends-dummy depends on libscotch-dev; however: Package libscotch-dev is not installed. pbuilder-satisfydepends-dummy depends on libxml2-dev; however: Package libxml2-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on libpetsc-real-dev; however: Package libpetsc-real-dev is not installed. pbuilder-satisfydepends-dummy depends on libpetsc-complex-dev; however: Package libpetsc-complex-dev is not installed. pbuilder-satisfydepends-dummy depends on libslepc-real-dev; however: Package libslepc-real-dev is not installed. pbuilder-satisfydepends-dummy depends on libslepc-complex-dev; however: Package libslepc-complex-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-petsc4py; however: Package python3-petsc4py is not installed. pbuilder-satisfydepends-dummy depends on python3-petsc4py-real; however: Package python3-petsc4py-real is not installed. pbuilder-satisfydepends-dummy depends on python3-petsc4py-complex; however: Package python3-petsc4py-complex is not installed. pbuilder-satisfydepends-dummy depends on python3-slepc4py; however: Package python3-slepc4py is not installed. pbuilder-satisfydepends-dummy depends on python3-slepc4py-real; however: Package python3-slepc4py-real is not installed. pbuilder-satisfydepends-dummy depends on python3-slepc4py-complex; however: Package python3-slepc4py-complex is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-cffi; however: Package python3-cffi is not installed. pbuilder-satisfydepends-dummy depends on python3-ffcx (>= 1:0.9.0~); however: Package python3-ffcx is not installed. pbuilder-satisfydepends-dummy depends on python3-ffcx (<< 1:0.10.0); however: Package python3-ffcx is not installed. pbuilder-satisfydepends-dummy depends on python3-ufl (>= 2024.2.0~); however: Package python3-ufl is not installed. pbuilder-satisfydepends-dummy depends on python3-mpi4py; however: Package python3-mpi4py is not installed. pbuilder-satisfydepends-dummy depends on python3-nanobind (>= 2.0.0~); however: Package python3-nanobind is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy (>= 1:1.21~); however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pip; however: Package python3-pip is not installed. pbuilder-satisfydepends-dummy depends on python3-ply; however: Package python3-ply is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pusimp (>= 0.1.1~); however: Package python3-pusimp is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-scikit-build-core; however: Package python3-scikit-build-core is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-virtualenv; however: Package python3-virtualenv is not installed. pbuilder-satisfydepends-dummy depends on libspdlog-dev; however: Package libspdlog-dev is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on graphviz; however: Package graphviz is not installed. pbuilder-satisfydepends-dummy depends on libjs-mathjax; however: Package libjs-mathjax is not installed. pbuilder-satisfydepends-dummy depends on libjs-modernizr; however: Package libjs-modernizr is not installed. pbuilder-satisfydepends-dummy depends on python3-jupytext; however: Package python3-jupytext is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-myst-parser; however: Package python3-myst-parser is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} catch2{a} chrpath{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} doxygen{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-lato{a} fonts-lyx{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} graphviz{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libabsl20230802{a} libadios2-common-c++11-dev{a} libadios2-common-core-dev{a} libadios2-mpi-auxiliary-2.10{a} libadios2-mpi-auxiliary-dev{a} libadios2-mpi-c++11-2.10{a} libadios2-mpi-c++11-dev{a} libadios2-mpi-core-2.10{a} libadios2-mpi-core-dev{a} libadios2-mpi-plugins{a} libaec-dev{a} libaec0{a} libamd-comgr2{a} libamd3{a} libamdhip64-5{a} libann0{a} libaom3{a} libarchive-zip-perl{a} libarchive13t64{a} libarpack2-dev{a} libarpack2t64{a} libavif16{a} libbasix-dev{a} libbasix0.9{a} libblas-dev{a} libblas3{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-math-dev{a} libboost-math1.83-dev{a} libboost-math1.83.0{a} libboost-mpi-dev{a} libboost-mpi1.83-dev{a} libboost-mpi1.83.0{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization-dev{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost-timer-dev{a} libboost-timer1.83-dev{a} libboost-timer1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbtf2{a} libc6-dbg{a} libcairo2{a} libcamd3{a} libcatch2-dev{a} libcbor0.10{a} libccolamd3{a} libcdt5{a} libcgraph6{a} libcholmod5{a} libclang-cpp19{a} libclang1-19{a} libcolamd3{a} libcom-err2{a} libcombblas2.0.0t64{a} libcurl4-openssl-dev{a} libcurl4t64{a} libcxsparse4{a} libdatrie1{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm2{a} libedit2{a} libeigen3-dev{a} libelf1t64{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-quad3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libfmt-dev{a} libfmt10{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libgts-0.7-5t64{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libhdf5-mpi-dev{a} libhdf5-openmpi-103-1t64{a} libhdf5-openmpi-cpp-103-1t64{a} libhdf5-openmpi-dev{a} libhdf5-openmpi-fortran-102t64{a} libhdf5-openmpi-hl-100t64{a} libhdf5-openmpi-hl-cpp-100t64{a} libhdf5-openmpi-hl-fortran-100t64{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libhypre-2.32.0{a} libhypre-dev{a} libibmad5{a} libibumad3{a} libibverbs-dev{a} libibverbs1{a} libice6{a} libicu-dev{a} libicu72{a} libidn2-dev{a} libimagequant0{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-modernizr{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libklu2{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblab-gamut1{a} liblapack-dev{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} libldap-dev{a} libldl3{a} liblerc4{a} libllvm17t64{a} libllvm19{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libmetis5{a} libmumps-5.7{a} libmumps-dev{a} libmumps-headers-dev{a} libmunge2{a} libnghttp2-14{a} libnghttp2-dev{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnorm1t64{a} libnsl2{a} libnuma-dev{a} libnuma1{a} libopenjp2-7{a} libopenmpi-dev{a} libopenmpi40{a} libp11-kit-dev{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libparpack2-dev{a} libparpack2t64{a} libparu1{a} libpathplan4{a} libpciaccess0{a} libpetsc-complex-dev{a} libpetsc-complex3.22{a} libpetsc-complex3.22-dev{a} libpetsc-real-dev{a} libpetsc-real3.22{a} libpetsc-real3.22-dev{a} libpetsc3.22-dev-common{a} libpgm-5.3-0t64{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpmix-dev{a} libpmix2t64{a} libpng16-16t64{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpsm-infinipath1{a} libpsm2-2{a} libptscotch-7.0{a} libptscotch-dev{a} libpugixml-dev{a} libpugixml1v5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} librav1e0.7{a} librbio4{a} librdmacm1t64{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.2{a} libscotch-7.0{a} libscotch-dev{a} libsharpyuv0{a} libslepc-complex-dev{a} libslepc-complex3.22{a} libslepc-complex3.22-dev{a} libslepc-real-dev{a} libslepc-real3.22{a} libslepc-real3.22-dev{a} libsm6{a} libsodium23{a} libspdlog-dev{a} libspdlog1.12{a} libspex3{a} libspqr4{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsuitesparse-dev{a} libsuitesparse-mongoose3{a} libsuitesparseconfig7{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist8{a} libsuperlu7{a} libsvtav1enc2{a} libsz2{a} libtasn1-6-dev{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libucx0{a} libumfpack6{a} libunbound8{a} libuv1t64{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxml2-dev{a} libxmu6{a} libxnvctrl0{a} libxpm4{a} libxrender1{a} libxslt1.1{a} libxss1{a} libxt6t64{a} libyaml-0-2{a} libyaml-cpp0.8{a} libyaml-dev{a} libyuv0{a} libz3-4{a} libzmq5{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} nanobind-dev{a} netbase{a} nettle-dev{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} pybuild-plugin-pyproject{a} python-babel-localedata{a} python-matplotlib-data{a} python-petsc4py-doc{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-autocommand{a} python3-babel{a} python3-basix{a} python3-brotli{a} python3-build{a} python3-certifi{a} python3-cffi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-dev{a} python3-distlib{a} python3-docutils{a} python3-fastjsonschema{a} python3-ffcx{a} python3-filelock{a} python3-fonttools{a} python3-fs{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-jupyter-core{a} python3-jupytext{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-markdown-it{a} python3-markupsafe{a} python3-matplotlib{a} python3-mdit-py-plugins{a} python3-mdurl{a} python3-minimal{a} python3-more-itertools{a} python3-mpi4py{a} python3-mpmath{a} python3-myst-parser{a} python3-nanobind{a} python3-nbformat{a} python3-numpy{a} python3-packaging{a} python3-pathspec{a} python3-petsc4py{a} python3-petsc4py-complex{a} python3-petsc4py-complex3.22{a} python3-petsc4py-real{a} python3-petsc4py-real3.22{a} python3-pil{a} python3-pil.imagetk{a} python3-pip{a} python3-pip-whl{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-ply{a} python3-pusimp{a} python3-pycparser{a} python3-pygments{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pyproject-metadata{a} python3-pytest{a} python3-referencing{a} python3-requests{a} python3-roman{a} python3-rpds-py{a} python3-scikit-build-core{a} python3-scipy{a} python3-setuptools{a} python3-setuptools-whl{a} python3-slepc4py{a} python3-slepc4py-complex{a} python3-slepc4py-complex3.22{a} python3-slepc4py-real{a} python3-slepc4py-real3.22{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sphinx-rtd-theme{a} python3-sphinxcontrib.jquery{a} python3-sympy{a} python3-tk{a} python3-toml{a} python3-traitlets{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufl{a} python3-ufolib2{a} python3-urllib3{a} python3-virtualenv{a} python3-wheel{a} python3-wheel-whl{a} python3-yaml{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.12-tk{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} robin-map-dev{a} sensible-utils{a} sgml-base{a} sphinx-common{a} sphinx-rtd-theme-common{a} swig{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} valgrind{a} valgrind-mpi{a} x11-common{a} x11proto-dev{a} xml-core{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-liberation gdb isympy-common javascript-common krb5-locales ksh ksh93u+m libarchive-cpio-perl libcoarrays-openmpi-dev libgl-dev libglib2.0-data libgraphblas-dev libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libjson-xs-perl libldap-common libmail-sendmail-perl libpaper-utils libpetsc3.22-dev-examples libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx mksh psmisc publicsuffix python3-bs4 python3-cssselect python3-html5lib python3-json-pointer python3-olefile python3-pooch python3-rfc3987 python3-uritemplate python3-webcolors shared-mime-info wget xauth xdg-user-dirs zsh 0 packages upgraded, 549 newly installed, 0 to remove and 0 not upgraded. Need to get 473 MB of archives. After unpacking 2159 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 fonts-lato all 2.015-1 [2780 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.7-1 [26.8 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-4 [256 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2~rc1-1 [23.6 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 13 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.7-1 [9712 B] Get: 23 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.7-1 [27.8 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.0-2 [856 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.0-2 [2038 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31 [15.4 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20240808-1 [93.9 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libcbor0.10 amd64 0.10.2-2 [28.3 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libfido2-1 amd64 1.15.0-1+b1 [78.7 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 openssh-client amd64 1:9.9p1-3 [991 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1042 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b2 [54.5 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b2 [17.0 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.15-1 [791 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get: 71 http://deb.debian.org/debian unstable/main amd64 libcatch2-dev amd64 3.7.1-0.4 [613 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 catch2 all 3.7.1-0.4 [5052 B] Get: 73 http://deb.debian.org/debian unstable/main amd64 chrpath amd64 0.18-1 [13.5 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.1-1 [2267 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.11.0-1 [351 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.1-1 [11.9 MB] Get: 90 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.2~rc1-1 [55.3 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 97 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 109 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.2.0-1 [731 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20241024 [109 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libllvm19 amd64 1:19.1.4-1 [26.0 MB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libclang-cpp19 amd64 1:19.1.4-1 [13.2 MB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libclang1-19 amd64 1:19.1.4-1 [7622 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libfmt10 amd64 10.1.1+ds1-4 [127 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 doxygen amd64 1.9.8+ds-2+b3 [5011 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-1.1+b1 [463 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 fonts-lyx all 2.4.2.1-1 [190 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libgfortran-14-dev amd64 14.2.0-8 [878 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-8 [11.7 MB] Get: 130 http://deb.debian.org/debian unstable/main amd64 gfortran-14 amd64 14.2.0-8 [12.2 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B] Get: 132 http://deb.debian.org/debian unstable/main amd64 gfortran amd64 4:14.2.0-1 [1436 B] Get: 133 http://deb.debian.org/debian unstable/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libcdt5 amd64 2.42.4-2+b1 [40.5 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libcgraph6 amd64 2.42.4-2+b1 [64.2 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libaom3 amd64 3.11.0-1 [1879 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.5.0-1+b1 [550 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libabsl20230802 amd64 20230802.1-4 [464 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libgav1-1 amd64 0.19.0-2+b2 [350 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 librav1e0.7 amd64 0.7.1-7+b2 [936 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libsvtav1enc2 amd64 2.2.1+dfsg-2 [2173 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libyuv0 amd64 0.0.1898.20241125-1 [172 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libavif16 amd64 1.1.1-1 [117 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-dav1d amd64 1.19.3-1 [11.2 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libde265-0 amd64 1.0.15-1+b2 [189 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-libde265 amd64 1.19.3-1 [15.0 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libheif1 amd64 1.19.3-1 [489 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.82.2-3 [1501 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 10.0.1-1 [477 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.1-1+b2 [14.1 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b2 [56.3 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 libgd3 amd64 2.3.3-12+b1 [126 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2+b1 [160 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 libltdl7 amd64 2.4.7-8 [393 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.55.0+ds-3 [225 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.55.0+ds-3 [54.6 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.55.0+ds-3 [35.4 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 libpathplan4 amd64 2.42.4-2+b1 [42.8 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 libgvc6 amd64 2.42.4-2+b1 [685 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 libgvpr2 amd64 2.42.4-2+b1 [193 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 liblab-gamut1 amd64 2.42.4-2+b1 [198 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b1 [188 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-3+b3 [58.8 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.16-1 [212 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 graphviz amd64 2.42.4-2+b1 [616 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 libnl-3-200 amd64 3.7.0-0.3+b1 [59.4 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-200 amd64 3.7.0-0.3+b1 [182 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 libibverbs1 amd64 52.0-2+b1 [62.2 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 ibverbs-providers amd64 52.0-2+b1 [343 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 72.1-5+b1 [210 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.21.3-3 [59.5 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.21.3-3 [41.7 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.21.3-3 [42.0 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.21.3-3 [53.5 kB] Get: 194 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.21.3-3 [126 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 libadios2-common-c++11-dev all 2.10.1+dfsg1-13 [25.5 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 libadios2-common-core-dev amd64 2.10.1+dfsg1-13 [124 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 libadios2-mpi-auxiliary-2.10 amd64 2.10.1+dfsg1-13 [402 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 libadios2-mpi-auxiliary-dev amd64 2.10.1+dfsg1-13 [23.0 kB] Get: 199 http://deb.debian.org/debian unstable/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB] Get: 201 http://deb.debian.org/debian unstable/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 librdmacm1t64 amd64 52.0-2+b1 [70.4 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 libfabric1 amd64 1.17.0-3.1 [631 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10+b1 [132 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10+b1 [54.3 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 libhwloc15 amd64 2.11.2-1 [164 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 libmunge2 amd64 0.5.15-4+b1 [20.0 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b2 [51.9 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 libxnvctrl0 amd64 535.171.04-1+b1 [14.2 kB] Get: 210 http://deb.debian.org/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b2 [40.2 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 libhwloc-plugins amd64 2.11.2-1 [18.1 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 libpmix2t64 amd64 5.0.4-1 [661 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 libllvm17t64 amd64 1:17.0.6-18 [23.6 MB] Get: 214 http://deb.debian.org/debian unstable/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b2 [13.0 MB] Get: 215 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.123-1 [8084 B] Get: 216 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 libhsakmt1 amd64 6.1.2+ds-1 [59.8 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 libhsa-runtime64-1 amd64 6.1.2-2 [535 kB] Get: 220 http://deb.debian.org/debian unstable/main amd64 libamdhip64-5 amd64 5.7.1-5 [8877 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 libibumad3 amd64 52.0-2+b1 [28.2 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 libibmad5 amd64 52.0-2+b1 [43.4 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 libucx0 amd64 1.17.0+ds-3 [1130 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 libopenmpi40 amd64 5.0.6-3 [2360 kB] Get: 225 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get: 226 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get: 227 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-103-1t64 amd64 1.10.10+repack-5+b1 [1311 kB] Get: 228 http://deb.debian.org/debian unstable/main amd64 libpugixml1v5 amd64 1.14-2 [88.6 kB] Get: 229 http://deb.debian.org/debian unstable/main amd64 libyaml-cpp0.8 amd64 0.8.0+dfsg-6+b2 [133 kB] Get: 230 http://deb.debian.org/debian unstable/main amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1+b1 [221 kB] Get: 231 http://deb.debian.org/debian unstable/main amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1+b1 [162 kB] Get: 232 http://deb.debian.org/debian unstable/main amd64 libsodium23 amd64 1.0.18-1+b2 [165 kB] Get: 233 http://deb.debian.org/debian unstable/main amd64 libzmq5 amd64 4.3.5-1+b3 [283 kB] Get: 234 http://deb.debian.org/debian unstable/main amd64 libadios2-mpi-plugins amd64 2.10.1+dfsg1-13 [15.0 kB] Get: 235 http://deb.debian.org/debian unstable/main amd64 libadios2-mpi-core-2.10 amd64 2.10.1+dfsg1-13 [1733 kB] Get: 236 http://deb.debian.org/debian unstable/main amd64 libadios2-mpi-c++11-2.10 amd64 2.10.1+dfsg1-13 [207 kB] Get: 237 http://deb.debian.org/debian unstable/main amd64 libadios2-mpi-core-dev amd64 2.10.1+dfsg1-13 [79.6 kB] Get: 238 http://deb.debian.org/debian unstable/main amd64 libadios2-mpi-c++11-dev amd64 2.10.1+dfsg1-13 [11.1 kB] Get: 239 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.3-1+b1 [21.5 kB] Get: 240 http://deb.debian.org/debian unstable/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-2 [23.8 kB] Get: 241 http://deb.debian.org/debian unstable/main amd64 libamd3 amd64 1:7.8.3+dfsg-2 [40.7 kB] Get: 242 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get: 243 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get: 244 http://deb.debian.org/debian unstable/main amd64 libarpack2t64 amd64 3.9.1-1.2+b1 [104 kB] Get: 245 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.0-4 [161 kB] Get: 246 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.0-4 [4991 kB] Get: 247 http://deb.debian.org/debian unstable/main amd64 libarpack2-dev amd64 3.9.1-1.2+b1 [120 kB] Get: 248 http://deb.debian.org/debian unstable/main amd64 libbasix0.9 amd64 0.9.0-2+b1 [410 kB] Get: 249 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 250 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 251 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 252 http://deb.debian.org/debian unstable/main amd64 pkg-config amd64 1.8.1-4 [14.0 kB] Get: 253 http://deb.debian.org/debian unstable/main amd64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 254 http://deb.debian.org/debian unstable/main amd64 libbasix-dev amd64 0.9.0-2+b1 [67.1 kB] Get: 255 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-3.2+b2 [10.6 MB] Get: 256 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83.0 amd64 1.83.0-3.2+b2 [234 kB] Get: 257 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83-dev amd64 1.83.0-3.2+b2 [235 kB] Get: 258 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.83.0t64 amd64 1.83.0-3.2+b2 [240 kB] Get: 259 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.83-dev amd64 1.83.0-3.2+b2 [246 kB] Get: 260 http://deb.debian.org/debian unstable/main amd64 libboost-chrono-dev amd64 1.83.0.2+b2 [4224 B] Get: 261 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83.0 amd64 1.83.0-3.2+b2 [230 kB] Get: 262 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83.0 amd64 1.83.0-3.2+b2 [333 kB] Get: 263 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83-dev amd64 1.83.0-3.2+b2 [373 kB] Get: 264 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83-dev amd64 1.83.0-3.2+b2 [239 kB] Get: 265 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 266 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-3.2+b2 [282 kB] Get: 267 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83.0 amd64 1.83.0-3.2+b2 [230 kB] Get: 268 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83-dev amd64 1.83.0-3.2+b2 [232 kB] Get: 269 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83-dev amd64 1.83.0-3.2+b2 [298 kB] Get: 270 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem-dev amd64 1.83.0.2+b2 [3628 B] Get: 271 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83.0 amd64 1.83.0-3.2+b2 [330 kB] Get: 272 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 72.1-5+b1 [10.4 MB] Get: 273 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83-dev amd64 1.83.0-3.2+b2 [347 kB] Get: 274 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-3.2+b2 [261 kB] Get: 275 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 276 http://deb.debian.org/debian unstable/main amd64 libboost-math1.83.0 amd64 1.83.0-3.2+b2 [524 kB] Get: 277 http://deb.debian.org/debian unstable/main amd64 libboost-math1.83-dev amd64 1.83.0-3.2+b2 [571 kB] Get: 278 http://deb.debian.org/debian unstable/main amd64 libboost-math-dev amd64 1.83.0.2+b2 [3796 B] Get: 279 http://deb.debian.org/debian unstable/main amd64 libboost-mpi1.83.0 amd64 1.83.0-3.2+b2 [271 kB] Get: 280 http://deb.debian.org/debian unstable/main amd64 openmpi-common all 5.0.6-3 [97.0 kB] Get: 281 http://deb.debian.org/debian unstable/main amd64 libnl-3-dev amd64 3.7.0-0.3+b1 [100 kB] Get: 282 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-dev amd64 3.7.0-0.3+b1 [200 kB] Get: 283 http://deb.debian.org/debian unstable/main amd64 libibverbs-dev amd64 52.0-2+b1 [636 kB] Get: 284 http://deb.debian.org/debian unstable/main amd64 libnuma-dev amd64 2.0.18-1+b1 [36.6 kB] Get: 285 http://deb.debian.org/debian unstable/main amd64 libltdl-dev amd64 2.4.7-8 [165 kB] Get: 286 http://deb.debian.org/debian unstable/main amd64 libhwloc-dev amd64 2.11.2-1 [254 kB] Get: 287 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 288 http://deb.debian.org/debian unstable/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-10+b1 [108 kB] Get: 289 http://deb.debian.org/debian unstable/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-10+b1 [61.1 kB] Get: 290 http://deb.debian.org/debian unstable/main amd64 libevent-dev amd64 2.1.12-stable-10+b1 [305 kB] Get: 291 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 292 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-2 [43.3 kB] Get: 293 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 294 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 295 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 296 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 297 http://deb.debian.org/debian unstable/main amd64 sphinx-common all 7.4.7-4 [731 kB] Get: 298 http://deb.debian.org/debian unstable/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 299 http://deb.debian.org/debian unstable/main amd64 python-babel-localedata all 2.16.0-1 [5696 kB] Get: 300 http://deb.debian.org/debian unstable/main amd64 python3-babel all 2.16.0-1 [114 kB] Get: 301 http://deb.debian.org/debian unstable/main amd64 python3-roman all 4.2-1 [10.4 kB] Get: 302 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 303 http://deb.debian.org/debian unstable/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 304 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 2.1.5-1+b2 [13.9 kB] Get: 305 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 306 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 307 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get: 308 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 309 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.0-1+b1 [140 kB] Get: 310 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.8-2 [41.6 kB] Get: 311 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.2.3-3 [112 kB] Get: 312 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 313 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 314 http://deb.debian.org/debian unstable/main amd64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 315 http://deb.debian.org/debian unstable/main amd64 python3-sphinx all 7.4.7-4 [588 kB] Get: 316 http://deb.debian.org/debian unstable/main amd64 libpmix-dev amd64 5.0.4-1 [3972 kB] Get: 317 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 318 http://deb.debian.org/debian unstable/main amd64 openmpi-bin amd64 5.0.6-3 [188 kB] Get: 319 http://deb.debian.org/debian unstable/main amd64 libopenmpi-dev amd64 5.0.6-3 [1088 kB] Get: 320 http://deb.debian.org/debian unstable/main amd64 mpi-default-dev amd64 1.17 [3148 B] Get: 321 http://deb.debian.org/debian unstable/main amd64 libboost-mpi1.83-dev amd64 1.83.0-3.2+b2 [290 kB] Get: 322 http://deb.debian.org/debian unstable/main amd64 libboost-mpi-dev amd64 1.83.0.2+b2 [3680 B] Get: 323 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.83.0 amd64 1.83.0-3.2+b2 [347 kB] Get: 324 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.83-dev amd64 1.83.0-3.2+b2 [376 kB] Get: 325 http://deb.debian.org/debian unstable/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B] Get: 326 http://deb.debian.org/debian unstable/main amd64 libboost-serialization-dev amd64 1.83.0.2+b2 [3832 B] Get: 327 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83.0 amd64 1.83.0-3.2+b2 [269 kB] Get: 328 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83-dev amd64 1.83.0-3.2+b2 [277 kB] Get: 329 http://deb.debian.org/debian unstable/main amd64 libboost-thread-dev amd64 1.83.0.2+b2 [3624 B] Get: 330 http://deb.debian.org/debian unstable/main amd64 libboost-timer1.83.0 amd64 1.83.0-3.2+b2 [235 kB] Get: 331 http://deb.debian.org/debian unstable/main amd64 libboost-timer1.83-dev amd64 1.83.0-3.2+b2 [237 kB] Get: 332 http://deb.debian.org/debian unstable/main amd64 libboost-timer-dev amd64 1.83.0.2+b2 [3716 B] Get: 333 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b6 [316 kB] Get: 334 http://deb.debian.org/debian unstable/main amd64 libbtf2 amd64 1:7.8.3+dfsg-2 [24.7 kB] Get: 335 http://deb.debian.org/debian unstable/main amd64 libc6-dbg amd64 2.40-4 [7117 kB] Get: 336 http://deb.debian.org/debian unstable/main amd64 libcamd3 amd64 1:7.8.3+dfsg-2 [37.5 kB] Get: 337 http://deb.debian.org/debian unstable/main amd64 libccolamd3 amd64 1:7.8.3+dfsg-2 [39.2 kB] Get: 338 http://deb.debian.org/debian unstable/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-2 [32.5 kB] Get: 339 http://deb.debian.org/debian unstable/main amd64 libcholmod5 amd64 1:7.8.3+dfsg-2 [638 kB] Get: 340 http://deb.debian.org/debian unstable/main amd64 libcombblas2.0.0t64 amd64 2.0.0-6+b1 [265 kB] Get: 341 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.7-2+b1 [123 kB] Get: 342 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.21.3-3 [15.7 kB] Get: 343 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.5.18+dfsg-3+b1 [303 kB] Get: 344 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB] Get: 345 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 346 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get: 347 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get: 348 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.22.0-1 [598 kB] Get: 349 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.8-2 [449 kB] Get: 350 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.8-2 [449 kB] Get: 351 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-2+b1 [208 kB] Get: 352 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.19.0-3+b3 [98.9 kB] Get: 353 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10-1+b1 [1317 kB] Get: 354 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.8-2 [1391 kB] Get: 355 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 356 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.3.2-2 [2742 kB] Get: 357 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 358 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.6+dfsg-1+b1 [365 kB] Get: 359 http://deb.debian.org/debian unstable/main amd64 libcurl4-openssl-dev amd64 8.11.0-1 [461 kB] Get: 360 http://deb.debian.org/debian unstable/main amd64 libcxsparse4 amd64 1:7.8.3+dfsg-2 [84.2 kB] Get: 361 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Get: 362 http://deb.debian.org/debian unstable/main amd64 libfftw3-double3 amd64 3.3.10-2+b1 [781 kB] Get: 363 http://deb.debian.org/debian unstable/main amd64 libfftw3-long3 amd64 3.3.10-2+b1 [347 kB] Get: 364 http://deb.debian.org/debian unstable/main amd64 libfftw3-quad3 amd64 3.3.10-2+b1 [618 kB] Get: 365 http://deb.debian.org/debian unstable/main amd64 libfftw3-single3 amd64 3.3.10-2+b1 [809 kB] Get: 366 http://deb.debian.org/debian unstable/main amd64 libfftw3-bin amd64 3.3.10-2+b1 [51.3 kB] Get: 367 http://deb.debian.org/debian unstable/main amd64 libfftw3-dev amd64 3.3.10-2+b1 [2118 kB] Get: 368 http://deb.debian.org/debian unstable/main amd64 libfftw3-mpi3 amd64 3.3.10-2+b1 [63.0 kB] Get: 369 http://deb.debian.org/debian unstable/main amd64 libfftw3-mpi-dev amd64 3.3.10-2+b1 [67.8 kB] Get: 370 http://deb.debian.org/debian unstable/main amd64 libfmt-dev amd64 10.1.1+ds1-4 [177 kB] Get: 371 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-fortran-102t64 amd64 1.10.10+repack-5+b1 [90.4 kB] Get: 372 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-hl-100t64 amd64 1.10.10+repack-5+b1 [64.3 kB] Get: 373 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-hl-fortran-100t64 amd64 1.10.10+repack-5+b1 [41.1 kB] Get: 374 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-cpp-103-1t64 amd64 1.10.10+repack-5+b1 [131 kB] Get: 375 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-hl-cpp-100t64 amd64 1.10.10+repack-5+b1 [21.8 kB] Get: 376 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3+b1 [292 kB] Get: 377 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-3+b1 [72.2 kB] Get: 378 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-dev amd64 1.10.10+repack-5+b1 [2720 kB] Get: 379 http://deb.debian.org/debian unstable/main amd64 libhdf5-mpi-dev amd64 1.10.10+repack-5+b1 [15.9 kB] Get: 380 http://deb.debian.org/debian unstable/main amd64 libmetis5 amd64 5.1.0.dfsg-7+b2 [176 kB] Get: 381 http://deb.debian.org/debian unstable/main amd64 libptscotch-7.0 amd64 7.0.5-2+b1 [657 kB] Get: 382 http://deb.debian.org/debian unstable/main amd64 libsuperlu-dist8 amd64 8.2.1+dfsg1-5+b1 [611 kB] Get: 383 http://deb.debian.org/debian unstable/main amd64 libhypre-2.32.0 amd64 2.32.0-2+b1 [1713 kB] Get: 384 http://deb.debian.org/debian unstable/main amd64 libsuperlu7 amd64 7.0.0+dfsg1-2 [174 kB] Get: 385 http://deb.debian.org/debian unstable/main amd64 libsuperlu-dev amd64 7.0.0+dfsg1-2 [21.9 kB] Get: 386 http://deb.debian.org/debian unstable/main amd64 libhypre-dev amd64 2.32.0-2+b1 [1988 kB] Get: 387 http://deb.debian.org/debian unstable/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 388 http://deb.debian.org/debian unstable/main amd64 libjs-modernizr all 3.13.0-0.1 [191 kB] Get: 389 http://deb.debian.org/debian unstable/main amd64 libklu2 amd64 1:7.8.3+dfsg-2 [90.6 kB] Get: 390 http://deb.debian.org/debian unstable/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b2 [29.4 kB] Get: 391 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 392 http://deb.debian.org/debian unstable/main amd64 libldl3 amd64 1:7.8.3+dfsg-2 [24.5 kB] Get: 393 http://deb.debian.org/debian unstable/main amd64 mpi-default-bin amd64 1.17 [2372 B] Get: 394 http://deb.debian.org/debian unstable/main amd64 libscalapack-openmpi2.2 amd64 2.2.1-7+b1 [1580 kB] Get: 395 http://deb.debian.org/debian unstable/main amd64 libmumps-5.7 amd64 5.7.3-3+b1 [1967 kB] Get: 396 http://deb.debian.org/debian unstable/main amd64 libmumps-headers-dev all 5.7.3-3 [36.3 kB] Get: 397 http://deb.debian.org/debian unstable/main amd64 libscalapack-openmpi-dev amd64 2.2.1-7+b1 [11.3 kB] Get: 398 http://deb.debian.org/debian unstable/main amd64 libscalapack-mpi-dev amd64 2.2.1-7+b1 [6420 B] Get: 399 http://deb.debian.org/debian unstable/main amd64 libmumps-dev amd64 5.7.3-3+b1 [1863 kB] Get: 400 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.0-2+b4 [199 kB] Get: 401 http://deb.debian.org/debian unstable/main amd64 libparpack2t64 amd64 3.9.1-1.2+b1 [99.9 kB] Get: 402 http://deb.debian.org/debian unstable/main amd64 libparpack2-dev amd64 3.9.1-1.2+b1 [112 kB] Get: 403 http://deb.debian.org/debian unstable/main amd64 libumfpack6 amd64 1:7.8.3+dfsg-2 [280 kB] Get: 404 http://deb.debian.org/debian unstable/main amd64 libparu1 amd64 1:7.8.3+dfsg-2 [65.1 kB] Get: 405 http://deb.debian.org/debian unstable/main amd64 libspqr4 amd64 1:7.8.3+dfsg-2 [146 kB] Get: 406 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-1+b2 [52.7 kB] Get: 407 http://deb.debian.org/debian unstable/main amd64 libpetsc-complex3.22 amd64 3.22.1+dfsg1-2 [8031 kB] Get: 408 http://deb.debian.org/debian unstable/main amd64 libsuitesparse-mongoose3 amd64 1:7.8.3+dfsg-2 [47.3 kB] Get: 409 http://deb.debian.org/debian unstable/main amd64 librbio4 amd64 1:7.8.3+dfsg-2 [39.9 kB] Get: 410 http://deb.debian.org/debian unstable/main amd64 libspex3 amd64 1:7.8.3+dfsg-2 [59.9 kB] Get: 411 http://deb.debian.org/debian unstable/main amd64 libsuitesparse-dev amd64 1:7.8.3+dfsg-2 [1476 kB] Get: 412 http://deb.debian.org/debian unstable/main amd64 libscotch-7.0 amd64 7.0.5-2+b1 [412 kB] Get: 413 http://deb.debian.org/debian unstable/main amd64 libscotch-dev amd64 7.0.5-2+b1 [1576 kB] Get: 414 http://deb.debian.org/debian unstable/main amd64 libptscotch-dev amd64 7.0.5-2+b1 [1376 kB] Get: 415 http://deb.debian.org/debian unstable/main amd64 opencl-c-headers all 3.0~2024.10.24-2 [46.8 kB] Get: 416 http://deb.debian.org/debian unstable/main amd64 opencl-clhpp-headers all 3.0~2024.10.24-2 [50.7 kB] Get: 417 http://deb.debian.org/debian unstable/main amd64 ocl-icd-opencl-dev amd64 2.3.2-1+b2 [8672 B] Get: 418 http://deb.debian.org/debian unstable/main amd64 libsuperlu-dist-dev amd64 8.2.1+dfsg1-5+b1 [904 kB] Get: 419 http://deb.debian.org/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 420 http://deb.debian.org/debian unstable/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get: 421 http://deb.debian.org/debian unstable/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB] Get: 422 http://deb.debian.org/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.5-1 [44.3 kB] Get: 423 http://deb.debian.org/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 424 http://deb.debian.org/debian unstable/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB] Get: 425 http://deb.debian.org/debian unstable/main amd64 libx11-dev amd64 2:1.8.10-2 [891 kB] Get: 426 http://deb.debian.org/debian unstable/main amd64 libyaml-dev amd64 0.2.5-1+b2 [63.5 kB] Get: 427 http://deb.debian.org/debian unstable/main amd64 libpetsc3.22-dev-common all 3.22.1+dfsg1-2 [310 kB] Get: 428 http://deb.debian.org/debian unstable/main amd64 valgrind amd64 1:3.20.0-2.1 [14.3 MB] Get: 429 http://deb.debian.org/debian unstable/main amd64 valgrind-mpi amd64 1:3.20.0-2.1 [123 kB] Get: 430 http://deb.debian.org/debian unstable/main amd64 libpetsc-complex3.22-dev amd64 3.22.1+dfsg1-2 [7923 kB] Get: 431 http://deb.debian.org/debian unstable/main amd64 libpetsc-complex-dev all 3.22.1+dfsg1-2 [12.8 kB] Get: 432 http://deb.debian.org/debian unstable/main amd64 libpetsc-real3.22 amd64 3.22.1+dfsg1-2 [7853 kB] Get: 433 http://deb.debian.org/debian unstable/main amd64 libpetsc-real3.22-dev amd64 3.22.1+dfsg1-2 [7948 kB] Get: 434 http://deb.debian.org/debian unstable/main amd64 libpetsc-real-dev all 3.22.1+dfsg1-2 [12.8 kB] Get: 435 http://deb.debian.org/debian unstable/main amd64 libpugixml-dev amd64 1.14-2 [109 kB] Get: 436 http://deb.debian.org/debian unstable/main amd64 libpython3.12t64 amd64 3.12.7-3 [2153 kB] Get: 437 http://deb.debian.org/debian unstable/main amd64 libpython3.12-dev amd64 3.12.7-3 [5124 kB] Get: 438 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.12.7-1 [9976 B] Get: 439 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [1992 kB] Get: 440 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.0-2 [2137 kB] Get: 441 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.0-2 [4994 kB] Get: 442 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.12.7-1 [1072 B] Get: 443 http://deb.debian.org/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-6+b2 [248 kB] Get: 444 http://deb.debian.org/debian unstable/main amd64 libslepc-complex3.22 amd64 3.22.1+dfsg1-2 [1425 kB] Get: 445 http://deb.debian.org/debian unstable/main amd64 libslepc-complex3.22-dev amd64 3.22.1+dfsg1-2 [6419 kB] Get: 446 http://deb.debian.org/debian unstable/main amd64 libslepc-complex-dev amd64 3.22.1+dfsg1-2 [15.9 kB] Get: 447 http://deb.debian.org/debian unstable/main amd64 libslepc-real3.22 amd64 3.22.1+dfsg1-2 [1388 kB] Get: 448 http://deb.debian.org/debian unstable/main amd64 libslepc-real3.22-dev amd64 3.22.1+dfsg1-2 [6394 kB] Get: 449 http://deb.debian.org/debian unstable/main amd64 libslepc-real-dev amd64 3.22.1+dfsg1-2 [15.9 kB] Get: 450 http://deb.debian.org/debian unstable/main amd64 libspdlog1.12 amd64 1:1.12.0+ds-2+b3 [104 kB] Get: 451 http://deb.debian.org/debian unstable/main amd64 libspdlog-dev amd64 1:1.12.0+ds-2+b3 [85.5 kB] Get: 452 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.4.0-0.1+b1 [111 kB] Get: 453 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.4.0-0.1+b1 [123 kB] Get: 454 http://deb.debian.org/debian unstable/main amd64 libxml2-dev amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [795 kB] Get: 455 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.35-1.1+b1 [233 kB] Get: 456 http://deb.debian.org/debian unstable/main amd64 robin-map-dev all 1.3.0-1 [29.8 kB] Get: 457 http://deb.debian.org/debian unstable/main amd64 nanobind-dev all 2.2.0-2 [159 kB] Get: 458 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 459 http://deb.debian.org/debian unstable/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get: 460 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.45.1-1 [56.7 kB] Get: 461 http://deb.debian.org/debian unstable/main amd64 python3-build all 1.2.2-1 [36.0 kB] Get: 462 http://deb.debian.org/debian unstable/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 463 http://deb.debian.org/debian unstable/main amd64 pybuild-plugin-pyproject all 6.20241024 [11.4 kB] Get: 464 http://deb.debian.org/debian unstable/main amd64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 465 http://deb.debian.org/debian unstable/main amd64 python-petsc4py-doc all 3.22.1-2 [778 kB] Get: 466 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.0-2 [730 kB] Get: 467 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.12.7-1 [1052 B] Get: 468 http://deb.debian.org/debian unstable/main amd64 python3.12-dev amd64 3.12.7-3 [505 kB] Get: 469 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.12.7-1 [26.1 kB] Get: 470 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.0-2 [504 kB] Get: 471 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.12.7-1 [1076 B] Get: 472 http://deb.debian.org/debian unstable/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 473 http://deb.debian.org/debian unstable/main amd64 python3-attr all 24.2.0-1 [68.4 kB] Get: 474 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [4738 kB] Get: 475 http://deb.debian.org/debian unstable/main amd64 python3-ufl all 2024.2.0-2 [150 kB] Get: 476 http://deb.debian.org/debian unstable/main amd64 python3-basix amd64 0.9.0-2+b1 [134 kB] Get: 477 http://deb.debian.org/debian unstable/main amd64 python3-brotli amd64 1.1.0-2+b6 [321 kB] Get: 478 http://deb.debian.org/debian unstable/main amd64 python3-cffi-backend amd64 1.17.1-2+b1 [96.2 kB] Get: 479 http://deb.debian.org/debian unstable/main amd64 python3-ply all 3.11-7 [62.6 kB] Get: 480 http://deb.debian.org/debian unstable/main amd64 python3-pycparser all 2.22-2 [78.0 kB] Get: 481 http://deb.debian.org/debian unstable/main amd64 python3-cffi all 1.17.1-2 [89.4 kB] Get: 482 http://deb.debian.org/debian unstable/main amd64 python3-contourpy amd64 1.3.0-2+b1 [264 kB] Get: 483 http://deb.debian.org/debian unstable/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get: 484 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 485 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 486 http://deb.debian.org/debian unstable/main amd64 python3-distlib all 0.3.9-1 [257 kB] Get: 487 http://deb.debian.org/debian unstable/main amd64 python3-fastjsonschema all 2.20.0-1 [21.8 kB] Get: 488 http://deb.debian.org/debian unstable/main amd64 python3-ffcx all 1:0.9.0-2 [94.9 kB] Get: 489 http://deb.debian.org/debian unstable/main amd64 python3-filelock all 3.16.1-1 [12.6 kB] Get: 490 http://deb.debian.org/debian unstable/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get: 491 http://deb.debian.org/debian unstable/main amd64 python3-fs all 2.4.16-5 [95.1 kB] Get: 492 http://deb.debian.org/debian unstable/main amd64 python3-lxml amd64 5.3.0-1+b1 [1676 kB] Get: 493 http://deb.debian.org/debian unstable/main amd64 python3-lz4 amd64 4.4.0+dfsg-1 [25.5 kB] Get: 494 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.14.1-3 [20.5 MB] Get: 495 http://deb.debian.org/debian unstable/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 496 http://deb.debian.org/debian unstable/main amd64 python3-sympy all 1.13.3-1 [4147 kB] Get: 497 http://deb.debian.org/debian unstable/main amd64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 498 http://deb.debian.org/debian unstable/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get: 499 http://deb.debian.org/debian unstable/main amd64 python3-fonttools amd64 4.55.0-3 [1634 kB] Get: 500 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 501 http://deb.debian.org/debian unstable/main amd64 python3-rpds-py amd64 0.21.0-2 [287 kB] Get: 502 http://deb.debian.org/debian unstable/main amd64 python3-referencing all 0.35.1-1 [23.5 kB] Get: 503 http://deb.debian.org/debian unstable/main amd64 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get: 504 http://deb.debian.org/debian unstable/main amd64 python3-jsonschema all 4.19.2-5 [71.4 kB] Get: 505 http://deb.debian.org/debian unstable/main amd64 python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 506 http://deb.debian.org/debian unstable/main amd64 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Get: 507 http://deb.debian.org/debian unstable/main amd64 python3-jupyter-core all 5.7.2-4 [35.1 kB] Get: 508 http://deb.debian.org/debian unstable/main amd64 python3-mdurl all 0.1.2-1 [9444 B] Get: 509 http://deb.debian.org/debian unstable/main amd64 python3-markdown-it all 3.0.0-2 [62.5 kB] Get: 510 http://deb.debian.org/debian unstable/main amd64 python3-mdit-py-plugins all 0.4.2-1 [32.4 kB] Get: 511 http://deb.debian.org/debian unstable/main amd64 python3-nbformat all 5.9.1-1 [45.1 kB] Get: 512 http://deb.debian.org/debian unstable/main amd64 python3-yaml amd64 6.0.2-1+b1 [178 kB] Get: 513 http://deb.debian.org/debian unstable/main amd64 python3-jupytext all 1.16.1+ds1-2 [87.2 kB] Get: 514 http://deb.debian.org/debian unstable/main amd64 python3-kiwisolver amd64 1.4.7-2+b1 [77.0 kB] Get: 515 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 10.4.0-1+b1 [522 kB] Get: 516 http://deb.debian.org/debian unstable/main amd64 python3.12-tk amd64 3.12.7-3 [112 kB] Get: 517 http://deb.debian.org/debian unstable/main amd64 python3.13-tk amd64 3.13.0-2 [103 kB] Get: 518 http://deb.debian.org/debian unstable/main amd64 python3-tk amd64 3.12.7-1 [9444 B] Get: 519 http://deb.debian.org/debian unstable/main amd64 python3-pil.imagetk amd64 10.4.0-1+b1 [79.8 kB] Get: 520 http://deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 521 http://deb.debian.org/debian unstable/main amd64 python3-matplotlib amd64 3.8.3-3+b1 [5654 kB] Get: 522 http://deb.debian.org/debian unstable/main amd64 python3-mpi4py amd64 4.0.1-6+b1 [1000 kB] Get: 523 http://deb.debian.org/debian unstable/main amd64 python3-myst-parser all 4.0.0-1 [78.7 kB] Get: 524 http://deb.debian.org/debian unstable/main amd64 python3-nanobind all 2.2.0-2 [39.5 kB] Get: 525 http://deb.debian.org/debian unstable/main amd64 python3-pathspec all 0.12.1-1 [28.1 kB] Get: 526 http://deb.debian.org/debian unstable/main amd64 swig amd64 4.2.1-1 [1437 kB] Get: 527 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py-real3.22 amd64 3.22.1-2 [1994 kB] Get: 528 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py-real all 3.22.1-2 [10.7 kB] Get: 529 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py-complex3.22 amd64 3.22.1-2 [1998 kB] Get: 530 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py-complex all 3.22.1-2 [10.7 kB] Get: 531 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py all 3.22.1-2 [10.9 kB] Get: 532 http://deb.debian.org/debian unstable/main amd64 python3-pip all 24.3.1+dfsg-1 [1441 kB] Get: 533 http://deb.debian.org/debian unstable/main amd64 python3-pip-whl all 24.3.1+dfsg-1 [1501 kB] Get: 534 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 535 http://deb.debian.org/debian unstable/main amd64 python3-pusimp all 0.1.1-1 [10.1 kB] Get: 536 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-metadata all 0.9.0-1 [20.8 kB] Get: 537 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.3-1 [249 kB] Get: 538 http://deb.debian.org/debian unstable/main amd64 python3-scikit-build-core all 0.10.7-2 [123 kB] Get: 539 http://deb.debian.org/debian unstable/main amd64 python3-setuptools-whl all 75.2.0-1 [1249 kB] Get: 540 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-real3.22 amd64 3.22.1-2 [492 kB] Get: 541 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-real all 3.22.1-2 [6616 B] Get: 542 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-complex3.22 amd64 3.22.1-2 [490 kB] Get: 543 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-complex all 3.22.1-2 [6688 B] Get: 544 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py all 3.22.1-2 [6808 B] Get: 545 http://deb.debian.org/debian unstable/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-1 [1023 kB] Get: 546 http://deb.debian.org/debian unstable/main amd64 python3-sphinxcontrib.jquery all 4.1-5 [7348 B] Get: 547 http://deb.debian.org/debian unstable/main amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-1 [29.5 kB] Get: 548 http://deb.debian.org/debian unstable/main amd64 python3-wheel-whl all 0.45.1-1 [75.3 kB] Get: 549 http://deb.debian.org/debian unstable/main amd64 python3-virtualenv all 20.28.0+ds-1 [71.3 kB] Fetched 473 MB in 21s (23.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19968 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. 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Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (3.0.2+dfsg-1) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b6) ... Setting up libfmt10:amd64 (10.1.1+ds1-4) ... Setting up chrpath (0.18-1) ... Setting up libp11-kit-dev:amd64 (0.25.5-2+b1) ... Setting up libblas-dev:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgfortran-14-dev:amd64 (14.2.0-8) ... Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libllvm19:amd64 (1:19.1.4-1) ... Setting up catch2 (3.7.1-0.4) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up liblapack3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libarpack2t64:amd64 (3.9.1-1.2+b1) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-3) ... Setting up libamd3:amd64 (1:7.8.3+dfsg-2) ... Setting up libclang1-19 (1:19.1.4-1) ... Setting up libxau-dev:amd64 (1:1.0.11-1) ... Setting up libboost-chrono1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libspdlog1.12:amd64 (1:1.12.0+ds-2+b3) ... Setting up libxpm4:amd64 (1:3.5.17-1+b2) ... Setting up nettle-dev:amd64 (3.10-1+b1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b2) ... Setting up libyaml-dev:amd64 (0.2.5-1+b2) ... Setting up libboost-math1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libtool (2.4.7-8) ... Setting up libcolamd3:amd64 (1:7.8.3+dfsg-2) ... Setting up libspex3:amd64 (1:7.8.3+dfsg-2) ... Setting up libboost-chrono-dev:amd64 (1.83.0.2+b2) ... Setting up libfftw3-bin (3.3.10-2+b1) ... Setting up libsuitesparse-mongoose3:amd64 (1:7.8.3+dfsg-2) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libboost-math-dev:amd64 (1.83.0.2+b2) ... Setting up libwebpdemux2:amd64 (1.4.0-0.1+b1) ... Setting up libevent-openssl-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libpugixml-dev:amd64 (1.14-2) ... Setting up libaec-dev:amd64 (1.1.3-1+b1) ... Setting up libcxsparse4:amd64 (1:7.8.3+dfsg-2) ... Setting up libboost-serialization1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libjpeg-dev:amd64 (1:2.1.5-3+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up libboost-filesystem1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up libcamd3:amd64 (1:7.8.3+dfsg-2) ... Setting up libsuperlu7:amd64 (7.0.0+dfsg1-2) ... Setting up gfortran-14-x86-64-linux-gnu (14.2.0-8) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:amd64 (2.0.18-1+b1) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.3+b1) ... Setting up libxnvctrl0:amd64 (535.171.04-1+b1) ... Setting up dh-autoreconf (20) ... Setting up libltdl-dev:amd64 (2.4.7-8) ... Setting up libthai0:amd64 (0.1.29-2+b1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libxdmcp-dev:amd64 (1:1.1.5-1) ... Setting up libxml2-dev:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libboost-timer1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libllvm17t64:amd64 (1:17.0.6-18) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up librbio4:amd64 (1:7.8.3+dfsg-2) ... Setting up libboost-date-time1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libldap-dev:amd64 (2.5.18+dfsg-3+b1) ... Setting up opencl-clhpp-headers (3.0~2024.10.24-2) ... Setting up liblapack-dev:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libeigen3-dev (3.4.0-4) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libfmt-dev:amd64 (10.1.1+ds1-4) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up pkg-config:amd64 (1.8.1-4) ... Setting up libgav1-1:amd64 (0.19.0-2+b2) ... Setting up libboost-serialization-dev:amd64 (1.83.0.2+b2) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up ocl-icd-opencl-dev:amd64 (2.3.2-1+b2) ... Setting up libevent-extra-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libccolamd3:amd64 (1:7.8.3+dfsg-2) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libgvpr2:amd64 (2.42.4-2+b1) ... Setting up libdrm2:amd64 (2.4.123-1) ... Setting up libnl-3-dev:amd64 (3.7.0-0.3+b1) ... Setting up libbasix0.9:amd64 (0.9.0-2+b1) ... Setting up groff-base (1.23.0-5) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:amd64 (1.1.35-1.1+b1) ... Setting up libharfbuzz0b:amd64 (10.0.1-1) ... Setting up libhwloc-dev:amd64 (2.11.2-1) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up libxss1:amd64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:amd64 (2.15.0-1.1+b1) ... Setting up gfortran-14 (14.2.0-8) ... Setting up libsuperlu-dev:amd64 (7.0.0+dfsg1-2) ... Setting up libbasix-dev:amd64 (0.9.0-2+b1) ... Setting up libsm6:amd64 (2:1.2.4-1) ... Setting up libarchive13t64:amd64 (3.7.4-1.1) ... Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... Setting up libfftw3-dev:amd64 (3.3.10-2+b1) ... Setting up libboost-timer-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-filesystem-dev:amd64 (1.83.0.2+b2) ... Setting up libclang-cpp19 (1:19.1.4-1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... Setting up libpython3.13:amd64 (3.13.0-2) ... Setting up libboost-thread1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up libgnutls28-dev:amd64 (3.8.8-2) ... Setting up libnghttp2-dev:amd64 (1.64.0-1) ... Setting up libibverbs1:amd64 (52.0-2+b1) ... Setting up fontconfig (2.15.0-1.1+b1) ... Regenerating fonts cache... done. Setting up libavif16:amd64 (1.1.1-1) ... Setting up libcholmod5:amd64 (1:7.8.3+dfsg-2) ... Setting up libxft2:amd64 (2.3.6-1+b2) ... Setting up libarpack2-dev:amd64 (3.9.1-1.2+b1) ... Setting up libxcb1-dev:amd64 (1.17.0-2+b1) ... Setting up libzmq5:amd64 (4.3.5-1+b3) ... Setting up libcurl4t64:amd64 (8.11.0-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up ibverbs-providers:amd64 (52.0-2+b1) ... Setting up libspqr4:amd64 (1:7.8.3+dfsg-2) ... Setting up python3.13 (3.13.0-2) ... Setting up python3-pip-whl (24.3.1+dfsg-1) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-3.2+b2) ... Setting up openssh-client (1:9.9p1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:amd64 (8.6.15-1) ... Setting up nanobind-dev (2.2.0-2) ... Setting up libpango-1.0-0:amd64 (1.55.0+ds-3) ... Setting up python3.12-tk (3.12.7-3) ... Setting up libx11-dev:amd64 (2:1.8.10-2) ... Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up libhwloc-plugins:amd64 (2.11.2-1) ... Setting up libspdlog-dev:amd64 (1:1.12.0+ds-2+b3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1) ... Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:amd64 (1.18.2-2) ... Setting up python3.13-tk (3.13.0-2) ... Setting up libnl-route-3-dev:amd64 (3.7.0-0.3+b1) ... Setting up doxygen (1.9.8+ds-2+b3) ... Setting up libklu2:amd64 (1:7.8.3+dfsg-2) ... Setting up libgssrpc4t64:amd64 (1.21.3-3) ... Setting up libraqm0:amd64 (0.10.1-1+b2) ... Setting up libpython3.13-dev:amd64 (3.13.0-2) ... Setting up sphinx-common (7.4.7-4) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2+b1) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libevent-dev (2.1.12-stable-10+b1) ... Setting up libpmix2t64:amd64 (5.0.4-1) ... Setting up libumfpack6:amd64 (1:7.8.3+dfsg-2) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up cmake (3.31.1-1) ... Setting up librdmacm1t64:amd64 (52.0-2+b1) ... Setting up libpangoft2-1.0-0:amd64 (1.55.0+ds-3) ... Setting up libhsakmt1:amd64 (6.1.2+ds-1) ... Setting up libboost-thread-dev:amd64 (1.83.0.2+b2) ... Setting up libpangocairo-1.0-0:amd64 (1.55.0+ds-3) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-3) ... Setting up libfabric1:amd64 (1.17.0-3.1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up libxmu6:amd64 (2:1.1.3-3+b3) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ... Setting up libkdb5-10t64:amd64 (1.21.3-3) ... Setting up python3.13-dev (3.13.0-2) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libxaw7:amd64 (2:1.0.16-1) ... Setting up python-petsc4py-doc (3.22.1-2) ... Setting up libibverbs-dev:amd64 (52.0-2+b1) ... Setting up libparu1:amd64 (1:7.8.3+dfsg-2) ... Setting up libpython3.12t64:amd64 (3.12.7-3) ... Setting up libhsa-runtime64-1:amd64 (6.1.2-2) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-3) ... Setting up libpython3-stdlib:amd64 (3.12.7-1) ... Setting up krb5-multidev:amd64 (1.21.3-3) ... Setting up libsuitesparse-dev:amd64 (1:7.8.3+dfsg-2) ... Setting up python3 (3.12.7-1) ... /usr/share/petsc/3.22/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l' axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') /usr/share/petsc/3.22/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l' axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:253: SyntaxWarning: invalid escape sequence '\d' print("\documentclass{article}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:256: SyntaxWarning: invalid escape sequence '\c' print("\centering") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:259: SyntaxWarning: invalid escape sequence '\m' print(" & & \multicolumn{4}{c}{--------------- Percent of -------------} & \\\\") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:261: SyntaxWarning: invalid escape sequence '\h' print("\hline") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:321: SyntaxWarning: invalid escape sequence '\e' print("\end{tabular}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:322: SyntaxWarning: invalid escape sequence '\e' print("\end{table}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:323: SyntaxWarning: invalid escape sequence '\e' print("\end{document}") Setting up libpython3.12-dev:amd64 (3.12.7-3) ... Setting up python3-distlib (0.3.9-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-markupsafe (2.1.5-1+b2) ... Setting up python3-wheel (0.45.1-1) ... Setting up python3-platformdirs (4.3.6-1) ... Setting up python3-tz (2024.1-2) ... Setting up libkrb5-dev:amd64 (1.21.3-3) ... Setting up python3-pil:amd64 (10.4.0-1+b1) ... Setting up python3-roman (4.2-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.2-1) ... Setting up libamdhip64-5 (5.7.1-5) ... Setting up python3-pyproject-hooks (1.2.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up libcurl4-openssl-dev:amd64 (8.11.0-1) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up python3-brotli (1.1.0-2+b6) ... Setting up python3-mdurl (0.1.2-1) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.7-2+b1) ... Setting up python3-idna (3.8-2) ... Setting up python3.12-dev (3.12.7-3) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-pip (24.3.1+dfsg-1) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up python3-urllib3 (2.2.3-3) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-markdown-it (3.0.0-2) ... Setting up python3-rpds-py (0.21.0-2) ... Setting up python3-fastjsonschema (2.20.0-1) ... Setting up python3-lxml:amd64 (5.3.0-1+b1) ... Setting up python3-traitlets (5.14.3+really5.14.3-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-build (1.2.2-1) ... Setting up python3-pathspec (0.12.1-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-pusimp (0.1.1-1) ... Setting up python3-jupyter-core (5.7.2-4) ... Setting up python3-cffi-backend:amd64 (1.17.1-2+b1) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.13.3-1) ... Setting up python3-attr (24.2.0-1) ... Setting up libucx0:amd64 (1.17.0+ds-3) ... Setting up python3-nanobind (2.2.0-2) ... Setting up python3-filelock (3.16.1-1) ... Setting up libpython3-dev:amd64 (3.12.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-pyproject-metadata (0.9.0-1) ... Setting up python3-lz4 (4.4.0+dfsg-1) ... Setting up python3-defusedxml (0.7.1-2) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up python3-ply (3.11-7) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-mdit-py-plugins (0.4.2-1) ... Setting up python3-virtualenv (20.28.0+ds-1) ... Setting up python3-all (3.12.7-1) ... Setting up python3-yaml (6.0.2-1+b1) ... Setting up python3-tk:amd64 (3.12.7-1) ... Setting up python3-pycparser (2.22-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pil.imagetk:amd64 (10.4.0-1+b1) ... Setting up libpython3-all-dev:amd64 (3.12.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.12.7-1) ... Setting up python3-referencing (0.35.1-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-all-dev (3.12.7-1) ... Setting up libopenmpi40:amd64 (5.0.6-3) ... Setting up libptscotch-7.0:amd64 (7.0.5-2+b1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-scikit-build-core (0.10.7-2) ... Setting up python3-babel (2.16.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-cffi (1.17.1-2) ... Setting up libcombblas2.0.0t64:amd64 (2.0.0-6+b1) ... Setting up libfftw3-mpi3:amd64 (3.3.10-2+b1) ... Setting up libhdf5-openmpi-103-1t64:amd64 (1.10.10+repack-5+b1) ... Setting up python3-fs (2.4.16-5) ... Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up libhdf5-openmpi-fortran-102t64:amd64 (1.10.10+repack-5+b1) ... Setting up libparpack2t64:amd64 (3.9.1-1.2+b1) ... Setting up libhdf5-openmpi-cpp-103-1t64:amd64 (1.10.10+repack-5+b1) ... Setting up python3-contourpy (1.3.0-2+b1) ... Setting up libboost-mpi1.83.0 (1.83.0-3.2+b2) ... Setting up python3-jsonschema-specifications (2023.12.1-2) ... Setting up openmpi-bin (5.0.6-3) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up dh-python (6.20241024) ... Setting up python3-scipy (1.14.1-3) ... Setting up python3-ufl (2024.2.0-2) ... Setting up libsuperlu-dist8:amd64 (8.2.1+dfsg1-5+b1) ... Setting up pybuild-plugin-pyproject (6.20241024) ... Setting up libfftw3-mpi-dev:amd64 (3.3.10-2+b1) ... Setting up mpi-default-bin (1.17) ... Setting up libhdf5-openmpi-hl-100t64:amd64 (1.10.10+repack-5+b1) ... Setting up libhypre-2.32.0:amd64 (2.32.0-2+b1) ... Setting up python3-mpi4py (4.0.1-6+b1) ... Setting up libsuperlu-dist-dev:amd64 (8.2.1+dfsg1-5+b1) ... Setting up libhdf5-openmpi-hl-fortran-100t64:amd64 (1.10.10+repack-5+b1) ... Setting up python3-jsonschema (4.19.2-5) ... Setting up libhdf5-openmpi-hl-cpp-100t64:amd64 (1.10.10+repack-5+b1) ... Setting up python3-basix (0.9.0-2+b1) ... Setting up libscalapack-openmpi2.2:amd64 (2.2.1-7+b1) ... Setting up python3-nbformat (5.9.1-1) ... Setting up python3-ffcx (1:0.9.0-2) ... Setting up libmumps-5.7:amd64 (5.7.3-3+b1) ... Setting up python3-jupytext (1.16.1+ds1-2) ... Setting up libscalapack-openmpi-dev:amd64 (2.2.1-7+b1) ... Setting up libpetsc-complex3.22:amd64 (3.22.1+dfsg1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_complex.so.3.22.1 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.22 (libpetsc.so.3.22) in auto mode Setting up python3-petsc4py-complex3.22 (3.22.1-2) ... Setting up python3-petsc4py (3.22.1-2) ... Setting up libpetsc-real3.22:amd64 (3.22.1+dfsg1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.22.1 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.22 (libpetsc.so.3.22) in auto mode Setting up python3-petsc4py-real3.22 (3.22.1-2) ... Setting up libslepc-complex3.22 (3.22.1+dfsg1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_complex.so.3.22.1 to provide /usr/lib/x86_64-linux-gnu/libslepc.so.3.22 (libslepc.so.3.22) in auto mode Setting up python3-petsc4py-complex (3.22.1-2) ... Setting up libslepc-real3.22 (3.22.1+dfsg1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.22.1 to provide /usr/lib/x86_64-linux-gnu/libslepc.so.3.22 (libslepc.so.3.22) in auto mode Setting up python3-slepc4py-complex3.22 (3.22.1-2) ... Setting up python3-petsc4py-real (3.22.1-2) ... Setting up python3-slepc4py-complex (3.22.1-2) ... Setting up python3-slepc4py-real3.22 (3.22.1-2) ... Setting up python3-slepc4py (3.22.1-2) ... Setting up python3-slepc4py-real (3.22.1-2) ... Setting up python3-fonttools (4.55.0-3) ... Setting up libadios2-mpi-plugins:amd64 (2.10.1+dfsg1-13) ... Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... Setting up libheif-plugin-dav1d:amd64 (1.19.3-1) ... Setting up python3-matplotlib (3.8.3-3+b1) ... Setting up libadios2-mpi-core-2.10:amd64 (2.10.1+dfsg1-13) ... Setting up libheif1:amd64 (1.19.3-1) ... Setting up libadios2-mpi-c++11-2.10:amd64 (2.10.1+dfsg1-13) ... Setting up libadios2-mpi-core-dev:amd64 (2.10.1+dfsg1-13) ... Setting up libgd3:amd64 (2.3.3-12+b1) ... Setting up libgvc6 (2.42.4-2+b1) ... Setting up graphviz (2.42.4-2+b1) ... Setting up libheif-plugin-libde265:amd64 (1.19.3-1) ... Setting up libadios2-mpi-c++11-dev:amd64 (2.10.1+dfsg1-13) ... Processing triggers for libc-bin (2.40-4) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up python3-sphinx (7.4.7-4) ... Setting up python3-myst-parser (4.0.0-1) ... Setting up libpmix-dev:amd64 (5.0.4-1) ... Setting up python3-sphinxcontrib.jquery (4.1-5) ... Setting up libopenmpi-dev:amd64 (5.0.6-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libhdf5-openmpi-dev (1.10.10+repack-5+b1) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-1) ... Setting up mpi-default-dev (1.17) ... Setting up libscalapack-mpi-dev:amd64 (2.2.1-7+b1) ... Setting up libmumps-dev:amd64 (5.7.3-3+b1) ... Setting up libscotch-dev (7.0.5-2+b1) ... Setting up libparpack2-dev:amd64 (3.9.1-1.2+b1) ... Setting up libhypre-dev:amd64 (2.32.0-2+b1) ... Setting up libptscotch-dev (7.0.5-2+b1) ... Setting up libboost-mpi1.83-dev (1.83.0-3.2+b2) ... Setting up libboost-mpi-dev (1.83.0.2+b2) ... Setting up libhdf5-mpi-dev (1.10.10+repack-5+b1) ... Setting up libpetsc3.22-dev-common (3.22.1+dfsg1-2) ... Setting up libpetsc-real3.22-dev:amd64 (3.22.1+dfsg1-2) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.22.1 to provide /usr/lib/x86_64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real to provide /usr/lib/petscdir/3.22 (petsc3.22) in auto mode Setting up libpetsc-complex3.22-dev:amd64 (3.22.1+dfsg1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_complex.so.3.22.1 to provide /usr/lib/x86_64-linux-gnu/libpetsc_complex.so (libpetsc_complex.so) in auto mode Setting up libslepc-complex3.22-dev (3.22.1+dfsg1-2) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_complex.so.3.22.1 to provide /usr/lib/x86_64-linux-gnu/libslepc_complex.so (libslepc_complex.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex to provide /usr/lib/slepcdir/3.22 (slepc3.22) in auto mode Setting up libpetsc-real-dev (3.22.1+dfsg1-2) ... Setting up libpetsc-complex-dev (3.22.1+dfsg1-2) ... Setting up libslepc-real3.22-dev (3.22.1+dfsg1-2) ... update-alternatives: using /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.22.1 to provide /usr/lib/x86_64-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/3.22 (slepc3.22) in auto mode Setting up libslepc-real-dev (3.22.1+dfsg1-2) ... Setting up libslepc-complex-dev (3.22.1+dfsg1-2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/fenics-dolfinx-0.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fenics-dolfinx_0.9.0-5_source.changes dpkg-buildpackage: info: source package fenics-dolfinx dpkg-buildpackage: info: source version 1:0.9.0-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake --with python3,sphinxdoc debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_auto_clean --builddir=/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real dh_auto_clean --builddir=/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex rm -rf python/build-real python/build-complex rm -rf debian/tmp-real debian/tmp-complex rm -rf python/fenics_dolfinx.egg-info rm -rf python/doc/build python/doc/source/generated rm -rf cpp/doc/latex cpp/doc/html cpp/doc/xml rm -rf /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake --with python3,sphinxdoc dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real dh_auto_configure --builddir=/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real -D/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -- -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING="--oversubscribe" -D CMAKE_CXX_FLAGS:STRING="-fpermissive" -D DOLFINX_EXTRA_CXX_FLAGS:STRING="-g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" -D DEBIAN_VERSION_ID=debian_1:0.9.0-5 cd obj-x86_64-linux-gnu-real && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING=--oversubscribe -D CMAKE_CXX_FLAGS:STRING=-fpermissive -D "DOLFINX_EXTRA_CXX_FLAGS:STRING=-g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" -D DEBIAN_VERSION_ID=debian_1:0.9.0-5 ../cpp -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found suitable version "3.1", minimum required is "3") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found suitable version "3.1", minimum required is "3") -- Found MPI: TRUE (found suitable version "3.1", minimum required is "3") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Checking for Basix hints with /usr/bin/python3 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found Python3: /usr/bin/python3 (found version "3.12.7") found components: Interpreter -- Asking Python module FFCx for location of ufcx.h... -- Found UFCx: /usr/lib/python3/dist-packages/ffcx/codegeneration (found suitable version "0.9.0", minimum required is "0.9") -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.1", minimum required is "2.8.1") found components: CXX -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'OPTIONAL;PETSc>=3.15;petsc>=3.15' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Found PETSc version 3.22.1, prefix: /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real -- Checking for one of the modules 'slepc>=3.15' -- Found SLEPc version 3.22.1, prefix: /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real -- Could NOT find SCOTCH (missing: SCOTCH_DIR) -- Checking for package 'SCOTCH-PT' -- Found SCOTCH (version 7.0.5) -- Performing test SCOTCH_TEST_RUNS -- Performing test SCOTCH_TEST_RUNS - Success -- Found SCOTCH: /usr/lib/x86_64-linux-gnu/libptscotch.so;/usr/lib/x86_64-linux-gnu/libscotch.so;/usr/lib/x86_64-linux-gnu/libptscotcherr.so -- Checking for package 'KaHIP' -- KaHIP could not be found/configured. (missing: KAHIP_INCLUDE_DIRS KAHIP_LIBRARIES KAHIP_TEST_RUNS) -- The following features have been enabled: * BUILD_SHARED_LIBS, Build DOLFINx with shared libraries. * DOLFINX_BASIX_PYTHON, Ask Python basix module for hint where to find Basix C++ install using CONFIG mode. * DOLFINX_UFCX_PYTHON, Ask Python FFCx module where to find ufcx.h header using MODULE mode. Otherwise use CONFIG mode. -- The following OPTIONAL packages have been found: * ADIOS2 (required version >= 2.8.1), Adaptable Input/Output (I/O) System., IO, including in parallel -- The following RECOMMENDED packages have been found: * PETSc, Portable, Extensible Toolkit for Scientific Computation, Linear and nonlinear solvers * SLEPc, Scalable Library for Eigenvalue Problem Computations, Eigenvalue computation -- The following REQUIRED packages have been found: * MPI (required version >= 3) * Threads * spdlog * pugixml * boost_headers (required version == 1.83.0) * boost_timer (required version == 1.83.0) * Boost (required version >= 1.70), Boost C++ libraries, * Basix (required version >= 0.8) * HDF5, Hierarchical Data Format 5 (HDF5), * Python3 * UFCx (required version >= 0.9), Interface for form-compilers (part of FFCx), * PkgConfig * SCOTCH, Programs and libraries for graph, mesh and hypergraph partitioning, Parallel graph partitioning -- The following features have been disabled: * INSTALL_RUNTIME_DEPENDENCIES, Include runtime dependencies in install (Windows-only) * DOLFINX_SKIP_BUILD_TESTS, Skip build tests for testing usability of dependency packages. * CMAKE_INSTALL_RPATH_USE_LINK_PATH, Add paths to linker search and installed rpath. -- The following OPTIONAL packages have not been found: * KaHIP, A family of graph partitioning programs, Parallel graph partitioning -- Configuring done (33.1s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY DOLFINX_ENABLE_DOCS DOLFINX_ENABLE_HDF5 DOLFINX_ENABLE_MPI DOLFINX_ENABLE_TRILINOS DOLFINX_EXTRA_CXX_FLAGS FETCHCONTENT_FULLY_DISCONNECTED MPIEXEC_PARAMS -- Build files have been written to: /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex dh_auto_configure --builddir=/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex -D/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -- -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING="--oversubscribe" -D CMAKE_CXX_FLAGS:STRING="-fpermissive" -D DOLFINX_EXTRA_CXX_FLAGS:STRING="-g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" -D DEBIAN_VERSION_ID=debian_1:0.9.0-5 cd obj-x86_64-linux-gnu-complex && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING=--oversubscribe -D CMAKE_CXX_FLAGS:STRING=-fpermissive -D "DOLFINX_EXTRA_CXX_FLAGS:STRING=-g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" -D DEBIAN_VERSION_ID=debian_1:0.9.0-5 ../cpp -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found suitable version "3.1", minimum required is "3") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found suitable version "3.1", minimum required is "3") -- Found MPI: TRUE (found suitable version "3.1", minimum required is "3") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Checking for Basix hints with /usr/bin/python3 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found Python3: /usr/bin/python3 (found version "3.12.7") found components: Interpreter -- Asking Python module FFCx for location of ufcx.h... -- Found UFCx: /usr/lib/python3/dist-packages/ffcx/codegeneration (found suitable version "0.9.0", minimum required is "0.9") -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.1", minimum required is "2.8.1") found components: CXX -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'OPTIONAL;PETSc>=3.15;petsc>=3.15' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - found -- Found PETSc version 3.22.1, prefix: /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex -- Checking for one of the modules 'slepc>=3.15' -- Found SLEPc version 3.22.1, prefix: /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex -- Could NOT find SCOTCH (missing: SCOTCH_DIR) -- Checking for package 'SCOTCH-PT' -- Found SCOTCH (version 7.0.5) -- Performing test SCOTCH_TEST_RUNS -- Performing test SCOTCH_TEST_RUNS - Success -- Found SCOTCH: /usr/lib/x86_64-linux-gnu/libptscotch.so;/usr/lib/x86_64-linux-gnu/libscotch.so;/usr/lib/x86_64-linux-gnu/libptscotcherr.so -- Checking for package 'KaHIP' -- KaHIP could not be found/configured. (missing: KAHIP_INCLUDE_DIRS KAHIP_LIBRARIES KAHIP_TEST_RUNS) -- The following features have been enabled: * BUILD_SHARED_LIBS, Build DOLFINx with shared libraries. * DOLFINX_BASIX_PYTHON, Ask Python basix module for hint where to find Basix C++ install using CONFIG mode. * DOLFINX_UFCX_PYTHON, Ask Python FFCx module where to find ufcx.h header using MODULE mode. Otherwise use CONFIG mode. -- The following OPTIONAL packages have been found: * ADIOS2 (required version >= 2.8.1), Adaptable Input/Output (I/O) System., IO, including in parallel -- The following RECOMMENDED packages have been found: * PETSc, Portable, Extensible Toolkit for Scientific Computation, Linear and nonlinear solvers * SLEPc, Scalable Library for Eigenvalue Problem Computations, Eigenvalue computation -- The following REQUIRED packages have been found: * MPI (required version >= 3) * Threads * spdlog * pugixml * boost_headers (required version == 1.83.0) * boost_timer (required version == 1.83.0) * Boost (required version >= 1.70), Boost C++ libraries, * Basix (required version >= 0.8) * HDF5, Hierarchical Data Format 5 (HDF5), * Python3 * UFCx (required version >= 0.9), Interface for form-compilers (part of FFCx), * PkgConfig * SCOTCH, Programs and libraries for graph, mesh and hypergraph partitioning, Parallel graph partitioning -- The following features have been disabled: * INSTALL_RUNTIME_DEPENDENCIES, Include runtime dependencies in install (Windows-only) * DOLFINX_SKIP_BUILD_TESTS, Skip build tests for testing usability of dependency packages. * CMAKE_INSTALL_RPATH_USE_LINK_PATH, Add paths to linker search and installed rpath. -- The following OPTIONAL packages have not been found: * KaHIP, A family of graph partitioning programs, Parallel graph partitioning -- Configuring done (29.3s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY DOLFINX_ENABLE_DOCS DOLFINX_ENABLE_HDF5 DOLFINX_ENABLE_MPI DOLFINX_ENABLE_TRILINOS DOLFINX_EXTRA_CXX_FLAGS FETCHCONTENT_FULLY_DISCONNECTED MPIEXEC_PARAMS -- Build files have been written to: /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real dh_auto_build --builddir=/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real cd obj-x86_64-linux-gnu-real && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -B/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/CMakeFiles /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real' make -f dolfinx/CMakeFiles/dolfinx.dir/build.make dolfinx/CMakeFiles/dolfinx.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real' cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx/CMakeFiles/dolfinx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real' make -f dolfinx/CMakeFiles/dolfinx.dir/build.make dolfinx/CMakeFiles/dolfinx.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real' [ 2%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/defines.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -DDOLFINX_GIT_COMMIT_HASH=\"debian_1:0.9.0-5\" -DUFCX_SIGNATURE=\"475c28073ccb3c02130118a9af65e8309bf276c3\" -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/defines.cpp.o -MF CMakeFiles/dolfinx.dir/common/defines.cpp.o.d -o CMakeFiles/dolfinx.dir/common/defines.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/defines.cpp [ 4%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o [ 6%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/log.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o -MF CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o.d -o CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/IndexMap.cpp [ 9%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Timer.cpp.o [ 11%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/MPI.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/log.cpp.o -MF CMakeFiles/dolfinx.dir/common/log.cpp.o.d -o CMakeFiles/dolfinx.dir/common/log.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/log.cpp [ 13%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Table.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/MPI.cpp.o -MF CMakeFiles/dolfinx.dir/common/MPI.cpp.o.d -o CMakeFiles/dolfinx.dir/common/MPI.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/MPI.cpp cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem 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/usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o -MF CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o.d -o CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/partitioners.cpp cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/utils.cpp.o -MF CMakeFiles/dolfinx.dir/fem/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/utils.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/utils.cpp [ 48%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/graph/partition.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/graph/partition.cpp.o -MF CMakeFiles/dolfinx.dir/graph/partition.cpp.o.d -o CMakeFiles/dolfinx.dir/graph/partition.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/partition.cpp [ 51%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o -MF CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o.d -o CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/ADIOS2Writers.cpp [ 53%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/cells.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi 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/usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o -MF CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o.d -o CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/HDF5Interface.cpp [ 58%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED 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dolfinx/CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o -MF CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o.d -o CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/vtk_utils.cpp [ 62%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o -MF CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o.d -o CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/XDMFFile.cpp [ 65%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem 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dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT 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/usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/cell_types.cpp [ 83%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/graphbuild.cpp [ 86%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI 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dolfinx/CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o -MF CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o.d -o CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/plaza.cpp [ 97%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/refinement/utils.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/refinement/utils.cpp.o -MF CMakeFiles/dolfinx.dir/refinement/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/refinement/utils.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/utils.cpp [100%] Linking CXX shared library libdolfinx_real.so cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfinx.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -fpermissive -O2 -g -DNDEBUG -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/dolfinx.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libdolfinx_real.so.0.9 -o libdolfinx_real.so.0.9.0 CMakeFiles/dolfinx.dir/common/defines.cpp.o CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o CMakeFiles/dolfinx.dir/common/log.cpp.o CMakeFiles/dolfinx.dir/common/MPI.cpp.o CMakeFiles/dolfinx.dir/common/Table.cpp.o CMakeFiles/dolfinx.dir/common/Timer.cpp.o CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o CMakeFiles/dolfinx.dir/common/timing.cpp.o CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o CMakeFiles/dolfinx.dir/fem/FiniteElement.cpp.o CMakeFiles/dolfinx.dir/fem/dofmapbuilder.cpp.o CMakeFiles/dolfinx.dir/fem/petsc.cpp.o CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o CMakeFiles/dolfinx.dir/fem/utils.cpp.o CMakeFiles/dolfinx.dir/graph/ordering.cpp.o CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o CMakeFiles/dolfinx.dir/graph/partition.cpp.o CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o CMakeFiles/dolfinx.dir/io/cells.cpp.o CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o CMakeFiles/dolfinx.dir/la/petsc.cpp.o CMakeFiles/dolfinx.dir/la/slepc.cpp.o CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o CMakeFiles/dolfinx.dir/mesh/utils.cpp.o CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o CMakeFiles/dolfinx.dir/refinement/utils.cpp.o /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/libptscotch.so /usr/lib/x86_64-linux-gnu/libscotch.so /usr/lib/x86_64-linux-gnu/libptscotcherr.so cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/cmake -E cmake_symlink_library libdolfinx_real.so.0.9.0 libdolfinx_real.so.0.9 libdolfinx_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real' [100%] Built target dolfinx make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real' PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex dh_auto_build --builddir=/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex cd obj-x86_64-linux-gnu-complex && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -B/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/CMakeFiles /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' make -f dolfinx/CMakeFiles/dolfinx.dir/build.make dolfinx/CMakeFiles/dolfinx.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx/CMakeFiles/dolfinx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' make -f dolfinx/CMakeFiles/dolfinx.dir/build.make dolfinx/CMakeFiles/dolfinx.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' [ 2%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/defines.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -DDOLFINX_GIT_COMMIT_HASH=\"debian_1:0.9.0-5\" -DUFCX_SIGNATURE=\"475c28073ccb3c02130118a9af65e8309bf276c3\" -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/defines.cpp.o -MF CMakeFiles/dolfinx.dir/common/defines.cpp.o.d -o CMakeFiles/dolfinx.dir/common/defines.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/defines.cpp [ 4%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o 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/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/log.cpp.o -MF CMakeFiles/dolfinx.dir/common/log.cpp.o.d -o CMakeFiles/dolfinx.dir/common/log.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/log.cpp cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/MPI.cpp.o -MF CMakeFiles/dolfinx.dir/common/MPI.cpp.o.d -o CMakeFiles/dolfinx.dir/common/MPI.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/MPI.cpp [ 13%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Timer.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/Table.cpp.o -MF CMakeFiles/dolfinx.dir/common/Table.cpp.o.d -o CMakeFiles/dolfinx.dir/common/Table.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Table.cpp cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time 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/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/graph/ordering.cpp.o -MF CMakeFiles/dolfinx.dir/graph/ordering.cpp.o.d -o CMakeFiles/dolfinx.dir/graph/ordering.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/ordering.cpp [ 48%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/graph/partition.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/graph/partition.cpp.o -MF CMakeFiles/dolfinx.dir/graph/partition.cpp.o.d -o CMakeFiles/dolfinx.dir/graph/partition.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/partition.cpp [ 51%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI 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/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/ADIOS2Writers.cpp [ 53%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/cells.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/cells.cpp.o -MF CMakeFiles/dolfinx.dir/io/cells.cpp.o.d -o CMakeFiles/dolfinx.dir/io/cells.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/cells.cpp [ 55%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o -MF CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o.d -o CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/HDF5Interface.cpp [ 58%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o -MF CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o.d -o CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/VTKFile.cpp [ 60%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o cd 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-MF CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o.d -o CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/vtk_utils.cpp [ 62%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem 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/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_mesh.cpp [ 69%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o -MF CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o.d -o CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_utils.cpp [ 72%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o -MF CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o.d -o CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/SparsityPattern.cpp [ 74%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/la/petsc.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/la/petsc.cpp.o -MF CMakeFiles/dolfinx.dir/la/petsc.cpp.o.d -o CMakeFiles/dolfinx.dir/la/petsc.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/petsc.cpp [ 76%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/la/slepc.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/la/slepc.cpp.o -MF 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Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC 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/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/topologycomputation.cpp [ 90%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/utils.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/utils.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/utils.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/utils.cpp [ 93%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o -MF CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o.d -o CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/nls/NewtonSolver.cpp [ 95%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o -MF CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o.d -o CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/plaza.cpp [ 97%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/refinement/utils.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -isystem /usr/include/scotch -fpermissive -O2 -g -DNDEBUG -std=gnu++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/refinement/utils.cpp.o -MF CMakeFiles/dolfinx.dir/refinement/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/refinement/utils.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/utils.cpp [100%] Linking CXX shared library libdolfinx_complex.so cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/cmake -E cmake_link_script 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CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o CMakeFiles/dolfinx.dir/fem/utils.cpp.o CMakeFiles/dolfinx.dir/graph/ordering.cpp.o CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o CMakeFiles/dolfinx.dir/graph/partition.cpp.o CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o CMakeFiles/dolfinx.dir/io/cells.cpp.o CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o CMakeFiles/dolfinx.dir/la/petsc.cpp.o CMakeFiles/dolfinx.dir/la/slepc.cpp.o CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o CMakeFiles/dolfinx.dir/mesh/utils.cpp.o CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o CMakeFiles/dolfinx.dir/refinement/utils.cpp.o /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/libpetsc_complex.so /usr/lib/x86_64-linux-gnu/libptscotch.so /usr/lib/x86_64-linux-gnu/libscotch.so /usr/lib/x86_64-linux-gnu/libptscotcherr.so cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/cmake -E cmake_symlink_library libdolfinx_complex.so.0.9.0 libdolfinx_complex.so.0.9 libdolfinx_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' [100%] Built target dolfinx make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' echo "Tests must be run after installation" Tests must be run after installation make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_auto_install --builddir=/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real --destdir=debian/tmp-real cd obj-x86_64-linux-gnu-real && make -j20 install DESTDIR=/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -B/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9.0 -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9 -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets-relwithdebinfo.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/defines.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/dolfinx_common.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/dolfinx_doc.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/IndexMap.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/log.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/sort.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/types.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/math.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/MPI.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/Scatterer.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/Table.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/Timer.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/TimeLogger.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/TimeLogManager.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/timing.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/Constant.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/CoordinateElement.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/DirichletBC.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/DofMap.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/ElementDofLayout.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/Expression.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/FiniteElement.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/Form.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/Function.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/FunctionSpace.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/assembler.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/assemble_matrix_impl.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/assemble_scalar_impl.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/assemble_vector_impl.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/discreteoperators.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/dofmapbuilder.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/dolfinx_fem.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/interpolate.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/petsc.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/sparsitybuild.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/traits.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/fem/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/geometry/BoundingBoxTree.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/geometry/gjk.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/geometry/dolfinx_geometry.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/geometry/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/graph/AdjacencyList.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/graph/dolfinx_graph.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/graph/ordering.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/graph/partitioners.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/graph/partition.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/io/dolfinx_io.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/io/ADIOS2Writers.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/io/cells.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/io/HDF5Interface.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/io/vtk_utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/io/VTKFile.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/io/XDMFFile.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/io/xdmf_function.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/io/xdmf_mesh.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/io/xdmf_utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/la/dolfinx_la.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/la/MatrixCSR.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/la/matrix_csr_impl.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/la/SparsityPattern.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/la/Vector.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/la/petsc.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/la/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/la/slepc.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/mesh/dolfinx_mesh.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/mesh/Mesh.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/mesh/Geometry.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/mesh/Topology.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/mesh/MeshTags.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/mesh/cell_types.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/mesh/generation.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/mesh/graphbuild.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/mesh/permutationcomputation.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/mesh/topologycomputation.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/mesh/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/nls/dolfinx_nls.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/nls/NewtonSolver.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/refinement/dolfinx_refinement.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/refinement/interval.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/refinement/plaza.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/refinement/refine.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/refinement/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/refinement/option.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include/dolfinx/common/version.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfig.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfigVersion.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx_real.pc -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf ---------------------------------------------------------------------------- DOLFINx has now been installed in /usr and demo programs have been installed in /usr/share/dolfinx/demo Don't forget to update your environment variables. This can be done easily using the helper file 'dolfinx.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf ---------------------------------------------------------------------------- make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real' cp COPYING.LESSER python for build in real; do \ PATH=/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-${build}/usr/bin:$PATH \ PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-${build} SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-${build} \ CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-${build}/usr/include" \ VERBOSE=1 \ ADIOS2_ALWAYS_USE_MPI=1 \ PUSIMP_EXPECT_DOLFINX_IN_CWD=1 \ pybuild --dir=/build/reproducible-path/fenics-dolfinx-0.9.0/python --dest-dir=/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-${build} --system=pyproject --name=dolfinx-${build} --test-pytest; \ done I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.13_dolfinx-real * Building wheel... *** scikit-build-core 0.10.7 using CMake 3.31.1 (wheel) *** Configuring CMake... loading initial cache file /tmp/tmpvrk7rcj3/build/CMakeInit.txt Re-run cmake no build system arguments -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python: /usr/bin/python3.13 (found version "3.13.0") found components: Interpreter Development Development.Module Development.Embed -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Checking for Basix hints with /usr/bin/python3.13 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.1", minimum required is "2.8.1") found components: CXX -- Found DOLFINx at /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx -- Found petsc4py include directory at /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -- Found mpi4py include directory at /usr/lib/python3/dist-packages/mpi4py/include -- Configuring done (15.5s) -- Generating done (0.0s) -- Build files have been written to: /tmp/tmpvrk7rcj3/build *** Building project with Unix Makefiles... Change Dir: '/tmp/tmpvrk7rcj3/build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile gmake[2]: Entering directory '/tmp/tmpvrk7rcj3/build' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.9.0/python -B/tmp/tmpvrk7rcj3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /tmp/tmpvrk7rcj3/build/CMakeFiles /tmp/tmpvrk7rcj3/build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[3]: Entering directory '/tmp/tmpvrk7rcj3/build' /usr/bin/gmake -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/depend gmake[4]: Entering directory '/tmp/tmpvrk7rcj3/build' cd /tmp/tmpvrk7rcj3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/python /build/reproducible-path/fenics-dolfinx-0.9.0/python /tmp/tmpvrk7rcj3/build /tmp/tmpvrk7rcj3/build /tmp/tmpvrk7rcj3/build/CMakeFiles/nanobind-static.dir/DependInfo.cmake "--color=" gmake[4]: Leaving directory '/tmp/tmpvrk7rcj3/build' /usr/bin/gmake -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/build gmake[4]: Entering directory '/tmp/tmpvrk7rcj3/build' [ 4%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -c /usr/share/nanobind/src/nb_internals.cpp [ 8%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o -c /usr/share/nanobind/src/nb_func.cpp [ 12%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o -c /usr/share/nanobind/src/nb_type.cpp [ 16%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o -c /usr/share/nanobind/src/nb_enum.cpp [ 20%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o -c /usr/share/nanobind/src/nb_ndarray.cpp [ 25%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o -c /usr/share/nanobind/src/nb_static_property.cpp [ 29%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o -c /usr/share/nanobind/src/common.cpp [ 33%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o -c /usr/share/nanobind/src/error.cpp [ 37%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o -c /usr/share/nanobind/src/trampoline.cpp [ 41%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o -c /usr/share/nanobind/src/implicit.cpp [ 45%] Linking CXX static library libnanobind-static.a /usr/bin/cmake -P CMakeFiles/nanobind-static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/nanobind-static.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libnanobind-static.a "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o" /usr/bin/x86_64-linux-gnu-ranlib libnanobind-static.a gmake[4]: Leaving directory '/tmp/tmpvrk7rcj3/build' [ 45%] Built target nanobind-static /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/depend gmake[4]: Entering directory '/tmp/tmpvrk7rcj3/build' cd /tmp/tmpvrk7rcj3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/python /build/reproducible-path/fenics-dolfinx-0.9.0/python /tmp/tmpvrk7rcj3/build /tmp/tmpvrk7rcj3/build /tmp/tmpvrk7rcj3/build/CMakeFiles/cpp.dir/DependInfo.cmake "--color=" gmake[4]: Leaving directory '/tmp/tmpvrk7rcj3/build' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/build gmake[4]: Entering directory '/tmp/tmpvrk7rcj3/build' [ 50%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PETSC4PY -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Dcpp_EXPORTS -Dcxx_std_20 -I/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -I/usr/include/python3.13 -I/usr/share/nanobind/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -O3 -DNDEBUG -std=gnu++20 -fPIC -fvisibility=hidden -fno-stack-protector -ffunction-sections -fdata-sections -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/python/dolfinx/wrappers/dolfinx.cpp [ 54%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/assemble.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PETSC4PY -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Dcpp_EXPORTS -Dcxx_std_20 -I/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -I/usr/include/python3.13 -I/usr/share/nanobind/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem 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[100%] =============================== warnings summary =============================== test/unit/fem/test_expression.py::test_facet_expression[complex64] test/unit/fem/test_expression.py::test_facet_expression[complex128] /usr/lib/python3/dist-packages/ffcx/element_interface.py:47: ComplexWarning: Casting complex values to real discards the imaginary part return np.asarray( test/unit/fem/test_function.py::test_cffi_expression[float32-float] test/unit/fem/test_function.py::test_cffi_expression[float64-double] /usr/lib/python3/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.13_dolfinx-real/build/../README.md' cannot be found for path in _filter_existing_files(_filepaths) test/unit/fem/test_function.py::test_cffi_expression[float32-float] test/unit/fem/test_function.py::test_cffi_expression[float64-double] /usr/lib/python3/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.13_dolfinx-real/build/COPYING.LESSER' cannot be found for path in _filter_existing_files(_filepaths) test/unit/fem/test_function.py::test_cffi_expression[float32-float] /usr/lib/python3/dist-packages/setuptools/command/easy_install.py:41: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================= slowest 20 durations ============================= 68.66s call test/unit/fem/test_petsc_nonlinear_assembler.py::TestNLSPETSc::test_assembly_solve_taylor_hood_nl[mesh2] 53.64s call test/unit/fem/test_petsc_nonlinear_assembler.py::TestNLSPETSc::test_assembly_solve_taylor_hood_nl[mesh0] 36.60s call test/unit/fem/test_assembler.py::TestPETScAssemblers::test_symmetry_interior_facet_assembly[mesh1] 36.31s call test/unit/la/test_nullspace.py::test_nullspace_check[2-3-complex128] 30.40s call test/unit/fem/test_fem_pipeline.py::test_NC_hex[3-NCE-CellType.hexahedron] 23.56s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[2-DQ-CellType.hexahedron] 23.32s call test/unit/fem/test_dof_permuting.py::test_integral[2-hexahedron-NCE] 23.02s call test/unit/fem/test_dof_permuting.py::test_integral[2-hexahedron-AAE] 22.98s call test/unit/fem/test_fem_pipeline.py::test_biharmonic[HHJ-float64] 22.68s call test/unit/la/test_nullspace.py::test_nullspace_check[2-3-complex64] 21.40s call test/unit/fem/test_element_integrals.py::test_facet_normals[float32-CellType.hexahedron] 19.99s call test/unit/fem/test_fem_pipeline.py::test_biharmonic[Regge-float32] 19.36s call test/unit/fem/test_element_integrals.py::test_facet_normals[complex64-CellType.hexahedron] 19.04s call test/unit/fem/test_fem_pipeline.py::test_NC_hex[3-NCF-CellType.hexahedron] 18.79s call test/unit/fem/test_fem_pipeline.py::test_P_simplex_built_in[float32-4-Lagrange-CellType.tetrahedron] 17.52s call test/unit/fem/test_fem_pipeline.py::test_biharmonic[Regge-float64] 17.44s call test/unit/fem/test_dof_permuting.py::test_integral[2-hexahedron-AAF] 17.03s call test/unit/fem/test_dof_permuting.py::test_integral[2-tetrahedron-N1curl] 16.88s call test/unit/fem/test_element_integrals.py::test_facet_normals[complex128-CellType.hexahedron] 16.74s call test/unit/fem/test_interpolation.py::test_interpolation_non_affine_nonmatching_maps = 2517 passed, 96 skipped, 27 xfailed, 5 xpassed, 7 warnings in 6290.40s (1:44:50) = I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.12_dolfinx-real * Building wheel... *** scikit-build-core 0.10.7 using CMake 3.31.1 (wheel) *** Configuring CMake... loading initial cache file /tmp/tmp8j1tb8yz/build/CMakeInit.txt Re-run cmake no build system arguments -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - 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not found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.1", minimum required is "2.8.1") found components: CXX -- Found DOLFINx at /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx -- Found petsc4py include directory at /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -- Found mpi4py include directory at /usr/lib/python3/dist-packages/mpi4py/include -- Configuring done (28.6s) -- Generating done (0.2s) -- Build files have been written to: /tmp/tmp8j1tb8yz/build *** Building project with Unix Makefiles... 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[ 11%] ........................................................................ [ 14%] ............................................. [ 15%] test/unit/fem/test_dof_coordinates.py ................ [ 16%] test/unit/fem/test_dof_permuting.py .................................... [ 17%] ........................................................................ [ 20%] ..................................ssssss [ 22%] test/unit/fem/test_dofmap.py ss.ss.ssss......... [ 22%] test/unit/fem/test_element_integrals.py ................................ [ 24%] ........................................................................ [ 26%] ........................................................................ [ 29%] ........................................................................ [ 32%] ................................ssssssssssssssss........................ [ 34%] [ 34%] test/unit/fem/test_expression.py ............................. [ 36%] test/unit/fem/test_fem_pipeline.py ...........s.................s....... [ 37%] ..........s.s.......s.............................s..................... [ 40%] .s.............................. [ 41%] test/unit/fem/test_forms.py .. [ 41%] test/unit/fem/test_function.py ............ [ 41%] test/unit/fem/test_function_space.py ............. [ 42%] test/unit/fem/test_ghost_mesh_assembly.py ..X..X [ 42%] test/unit/fem/test_interpolation.py .................................... [ 44%] ........................................................................ [ 46%] ........................................................................ [ 49%] ...s............................ [ 50%] test/unit/fem/test_mixed_element.py ...................... [ 51%] test/unit/fem/test_mixed_mesh_dofmap.py .. [ 51%] test/unit/fem/test_petsc_discrete_operators.py ......................... [ 52%] ........................................................................ [ 55%] ................ [ 55%] test/unit/fem/test_petsc_nonlinear_assembler.py ...... [ 56%] test/unit/fem/test_petsc_solver_wrappers.py .. [ 56%] test/unit/fem/test_quadrature_elements.py .............................. [ 57%] ...... [ 57%] test/unit/fem/test_special_functions.py ... [ 57%] test/unit/fem/test_symmetric_tensor.py ........ [ 57%] test/unit/fem/test_symmetry.py ......................................... [ 59%] ....................................................... [ 61%] test/unit/fem/test_vector_assemble.py .. [ 61%] test/unit/fem/test_vector_function.py .......... [ 62%] test/unit/geometry/test_bounding_box_tree.py ........................... [ 63%] ................................. [ 64%] test/unit/geometry/test_gjk.py ......................................... [ 65%] ...................... [ 66%] test/unit/graph/test_adjacencylist.py .. [ 66%] test/unit/io/test_adios2.py ............................................ [ 68%] .....ssssssss [ 68%] test/unit/io/test_vtk.py ....................... [ 69%] test/unit/io/test_xdmf_function.py ..................................... [ 71%] ...........................................s [ 72%] test/unit/io/test_xdmf_mesh.py ..........ss............................. [ 74%] ................................... [ 75%] test/unit/io/test_xdmf_meshdata.py .. [ 75%] test/unit/io/test_xdmf_meshtags.py .... [ 75%] test/unit/la/test_matrix_csr.py ............................ [ 77%] test/unit/la/test_matrix_vector.py ............xxx....xxx....xxxxxxxxxx [ 78%] test/unit/la/test_nullspace.py ................................ [ 79%] test/unit/la/test_sparsity_pattern.py . [ 79%] test/unit/la/test_vector_scatter.py ........... [ 80%] test/unit/mesh/test_cell.py ... [ 80%] test/unit/mesh/test_create_mixed_mesh.py . [ 80%] test/unit/mesh/test_dual_graph.py . [ 80%] test/unit/mesh/test_face.py s. [ 80%] test/unit/mesh/test_ghost_mesh.py X..X...X [ 80%] test/unit/mesh/test_higher_order_mesh.py ............................... [ 81%] ....................x...x..........xx..xx.......ssssssssssssssssssssssss [ 84%] .................. [ 85%] test/unit/mesh/test_manifold_point_search.py . [ 85%] test/unit/mesh/test_mesh.py ....................ss....s................. [ 86%] ........................................................................ [ 89%] ........................................................................ [ 92%] ...................................................................... [ 95%] test/unit/mesh/test_mesh_partitioners.py ..ss..ss..ss..ss..ss..ss....... [ 96%] . [ 96%] test/unit/mesh/test_meshtags.py .... [ 96%] test/unit/mesh/test_mixed_topology.py .... [ 96%] test/unit/nls/test_newton.py ... [ 96%] test/unit/refinement/test_interval.py .................................. [ 97%] ...................................... [ 99%] test/unit/refinement/test_refinement.py ................. [100%] =============================== warnings summary =============================== test/unit/fem/test_expression.py::test_facet_expression[complex64] test/unit/fem/test_expression.py::test_facet_expression[complex128] /usr/lib/python3/dist-packages/ffcx/element_interface.py:47: ComplexWarning: Casting complex values to real discards the imaginary part return np.asarray( test/unit/fem/test_function.py::test_cffi_expression[float32-float] test/unit/fem/test_function.py::test_cffi_expression[float64-double] /usr/lib/python3/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.12_dolfinx-real/build/../README.md' cannot be found for path in _filter_existing_files(_filepaths) test/unit/fem/test_function.py::test_cffi_expression[float32-float] test/unit/fem/test_function.py::test_cffi_expression[float64-double] /usr/lib/python3/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.12_dolfinx-real/build/COPYING.LESSER' cannot be found for path in _filter_existing_files(_filepaths) test/unit/fem/test_function.py::test_cffi_expression[float32-float] /usr/lib/python3/dist-packages/setuptools/command/easy_install.py:41: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================= slowest 20 durations ============================= 59.30s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[2-DQ-CellType.hexahedron] 57.80s call test/unit/fem/test_assembler.py::TestPETScAssemblers::test_symmetry_interior_facet_assembly[mesh1] 47.40s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[1-DQ-CellType.hexahedron] 36.83s call test/unit/fem/test_fem_pipeline.py::test_DPC_hex[2-DPC-CellType.hexahedron] 35.17s call test/unit/fem/test_fem_pipeline.py::test_dP_simplex[3-DG-CellType.tetrahedron] 33.14s call test/unit/la/test_nullspace.py::test_nullspace_check[2-3-complex128] 30.76s call test/unit/fem/test_fem_pipeline.py::test_dP_simplex[2-DG-CellType.tetrahedron] 30.02s call test/unit/fem/test_fem_pipeline.py::test_P_tp[4-Q-CellType.hexahedron] 29.53s call test/unit/fem/test_fem_pipeline.py::test_NC_hex[3-NCE-CellType.hexahedron] 29.41s call test/unit/fem/test_fem_pipeline.py::test_NC_hex[3-NCF-CellType.hexahedron] 28.80s call test/unit/fem/test_fem_pipeline.py::test_BDM_N2curl_simplex_highest_order[3-BDM-CellType.tetrahedron] 28.80s call test/unit/fem/test_assembler.py::TestPETScAssemblers::test_assembly_solve_taylor_hood[mesh2] 27.50s call test/unit/fem/test_fem_pipeline.py::test_vector_P_tp[3-Q-CellType.hexahedron] 25.50s call test/unit/fem/test_fem_pipeline.py::test_biharmonic[Regge-float32] 23.25s call test/unit/la/test_nullspace.py::test_nullspace_check[2-3-complex64] 23.02s call test/unit/la/test_nullspace.py::test_nullspace_check[2-3-float32] 22.34s call test/unit/fem/test_fem_pipeline.py::test_dP_quad[3-DQ-CellType.quadrilateral] 21.51s call test/unit/fem/test_fem_pipeline.py::test_BDM_N2curl_simplex_highest_order[3-N2curl-CellType.tetrahedron] 20.92s call test/unit/fem/test_petsc_nonlinear_assembler.py::TestNLSPETSc::test_matrix_assembly_block_nl 20.40s call test/unit/fem/test_fem_pipeline.py::test_AA_hex[3-AAE-CellType.hexahedron] = 2517 passed, 96 skipped, 27 xfailed, 5 xpassed, 7 warnings in 9007.05s (2:30:07) = dh_auto_install -a --builddir=/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex --destdir=debian/tmp-complex cd obj-x86_64-linux-gnu-complex && make -j20 install DESTDIR=/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -B/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.9.0 -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.9 -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets-relwithdebinfo.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/defines.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/dolfinx_common.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/dolfinx_doc.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/IndexMap.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/log.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/sort.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/types.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/math.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/MPI.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/Scatterer.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/Table.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/Timer.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/TimeLogger.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/TimeLogManager.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/timing.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/Constant.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/CoordinateElement.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/DirichletBC.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/DofMap.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/ElementDofLayout.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/Expression.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/FiniteElement.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/Form.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/Function.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/FunctionSpace.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/assembler.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/assemble_matrix_impl.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/assemble_scalar_impl.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/assemble_vector_impl.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/discreteoperators.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/dofmapbuilder.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/dolfinx_fem.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/interpolate.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/petsc.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/sparsitybuild.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/traits.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/geometry/BoundingBoxTree.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/geometry/gjk.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/geometry/dolfinx_geometry.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/geometry/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/graph/AdjacencyList.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/graph/dolfinx_graph.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/graph/ordering.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/graph/partitioners.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/graph/partition.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/dolfinx_io.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/ADIOS2Writers.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/cells.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/HDF5Interface.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/vtk_utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/VTKFile.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/XDMFFile.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/xdmf_function.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/xdmf_mesh.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/xdmf_utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/dolfinx_la.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/MatrixCSR.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/matrix_csr_impl.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/SparsityPattern.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/Vector.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/petsc.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/slepc.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/dolfinx_mesh.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/Mesh.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/Geometry.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/Topology.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/MeshTags.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/cell_types.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/generation.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/graphbuild.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/permutationcomputation.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/topologycomputation.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/nls/dolfinx_nls.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/nls/NewtonSolver.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/refinement/dolfinx_refinement.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/refinement/interval.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/refinement/plaza.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/refinement/refine.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/refinement/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/refinement/option.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/version.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfig.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfigVersion.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx_complex.pc -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf ---------------------------------------------------------------------------- DOLFINx has now been installed in /usr and demo programs have been installed in /usr/share/dolfinx/demo Don't forget to update your environment variables. This can be done easily using the helper file 'dolfinx.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf ---------------------------------------------------------------------------- make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' cp COPYING.LESSER python dh_numpy3 -a for build in complex; do \ PATH=/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-${build}/usr/bin:$PATH \ PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-${build} SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-${build} \ CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-${build}/usr/include" \ VERBOSE=1 \ PUSIMP_EXPECT_DOLFINX_IN_CWD=1 \ pybuild --dir=/build/reproducible-path/fenics-dolfinx-0.9.0/python --dest-dir=/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-${build} --system=pyproject --name=dolfinx-${build} --test-pytest; \ done I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.13_dolfinx-complex * Building wheel... *** scikit-build-core 0.10.7 using CMake 3.31.1 (wheel) *** Configuring CMake... loading initial cache file /tmp/tmp3ycnjsft/build/CMakeInit.txt Re-run cmake no build system arguments -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python: /usr/bin/python3.13 (found version "3.13.0") found components: Interpreter Development Development.Module Development.Embed -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Checking for Basix hints with /usr/bin/python3.13 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.1", minimum required is "2.8.1") found components: CXX -- Found DOLFINx at /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx -- Found petsc4py include directory at /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -- Found mpi4py include directory at /usr/lib/python3/dist-packages/mpi4py/include -- Configuring done (23.8s) -- Generating done (0.1s) -- Build files have been written to: /tmp/tmp3ycnjsft/build *** Building project with Unix Makefiles... Change Dir: '/tmp/tmp3ycnjsft/build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile gmake[2]: Entering directory '/tmp/tmp3ycnjsft/build' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.9.0/python -B/tmp/tmp3ycnjsft/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /tmp/tmp3ycnjsft/build/CMakeFiles /tmp/tmp3ycnjsft/build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[3]: Entering directory '/tmp/tmp3ycnjsft/build' /usr/bin/gmake -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/depend gmake[4]: Entering directory '/tmp/tmp3ycnjsft/build' cd /tmp/tmp3ycnjsft/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/python /build/reproducible-path/fenics-dolfinx-0.9.0/python /tmp/tmp3ycnjsft/build /tmp/tmp3ycnjsft/build /tmp/tmp3ycnjsft/build/CMakeFiles/nanobind-static.dir/DependInfo.cmake "--color=" gmake[4]: Leaving directory '/tmp/tmp3ycnjsft/build' /usr/bin/gmake -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/build gmake[4]: Entering directory '/tmp/tmp3ycnjsft/build' [ 4%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -c /usr/share/nanobind/src/nb_internals.cpp [ 8%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o -c /usr/share/nanobind/src/nb_func.cpp [ 12%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o -c /usr/share/nanobind/src/nb_type.cpp [ 16%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o -c /usr/share/nanobind/src/nb_enum.cpp [ 20%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o -c /usr/share/nanobind/src/nb_ndarray.cpp [ 25%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o -c /usr/share/nanobind/src/nb_static_property.cpp [ 29%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o -c /usr/share/nanobind/src/common.cpp [ 33%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o -c /usr/share/nanobind/src/error.cpp [ 37%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o -c /usr/share/nanobind/src/trampoline.cpp [ 41%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o -c /usr/share/nanobind/src/implicit.cpp [ 45%] Linking CXX static library libnanobind-static.a /usr/bin/cmake -P CMakeFiles/nanobind-static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/nanobind-static.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libnanobind-static.a "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o" /usr/bin/x86_64-linux-gnu-ranlib libnanobind-static.a gmake[4]: Leaving directory '/tmp/tmp3ycnjsft/build' [ 45%] Built target nanobind-static /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/depend gmake[4]: Entering directory '/tmp/tmp3ycnjsft/build' cd /tmp/tmp3ycnjsft/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/python /build/reproducible-path/fenics-dolfinx-0.9.0/python /tmp/tmp3ycnjsft/build /tmp/tmp3ycnjsft/build /tmp/tmp3ycnjsft/build/CMakeFiles/cpp.dir/DependInfo.cmake "--color=" gmake[4]: Leaving directory '/tmp/tmp3ycnjsft/build' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/build gmake[4]: Entering directory '/tmp/tmp3ycnjsft/build' [ 50%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PETSC4PY -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -Dcpp_EXPORTS -Dcxx_std_20 -I/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include 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[100%] =============================== warnings summary =============================== test/unit/fem/test_discrete_operators.py: 72 warnings /build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.13_dolfinx-complex/build/test/unit/fem/test_discrete_operators.py:253: ComplexWarning: Casting complex values to real discards the imaginary part ux[: len(u.x.array)] = u.x.array[:] test/unit/fem/test_expression.py::test_facet_expression[complex64] test/unit/fem/test_expression.py::test_facet_expression[complex128] /usr/lib/python3/dist-packages/ffcx/element_interface.py:47: ComplexWarning: Casting complex values to real discards the imaginary part return np.asarray( test/unit/fem/test_function.py::test_cffi_expression[float32-float] test/unit/fem/test_function.py::test_cffi_expression[float64-double] /usr/lib/python3/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.13_dolfinx-complex/build/../README.md' cannot be found for path in _filter_existing_files(_filepaths) test/unit/fem/test_function.py::test_cffi_expression[float32-float] test/unit/fem/test_function.py::test_cffi_expression[float64-double] /usr/lib/python3/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.13_dolfinx-complex/build/COPYING.LESSER' cannot be found for path in _filter_existing_files(_filepaths) test/unit/fem/test_function.py::test_cffi_expression[float32-float] /usr/lib/python3/dist-packages/setuptools/command/easy_install.py:41: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================= slowest 20 durations ============================= 72.20s call test/unit/fem/test_assembler.py::TestPETScAssemblers::test_symmetry_interior_facet_assembly[mesh1] 63.25s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[1-DQ-CellType.hexahedron] 44.27s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[2-DQ-CellType.hexahedron] 41.53s call test/unit/fem/test_fem_pipeline.py::test_DPC_hex[2-DPC-CellType.hexahedron] 34.18s call test/unit/fem/test_fem_pipeline.py::test_NC_hex[3-NCE-CellType.hexahedron] 29.81s call test/unit/fem/test_fem_pipeline.py::test_dP_quad[2-DQ-CellType.quadrilateral] 29.46s call test/unit/fem/test_fem_pipeline.py::test_NC_hex[3-NCF-CellType.hexahedron] 27.73s call test/unit/fem/test_fem_pipeline.py::test_BDM_N2curl_simplex_highest_order[3-BDM-CellType.tetrahedron] 26.91s call test/unit/fem/test_assembler.py::TestPETScAssemblers::test_assembly_solve_taylor_hood[mesh2] 25.27s call test/unit/fem/test_petsc_nonlinear_assembler.py::TestNLSPETSc::test_assembly_solve_taylor_hood_nl[mesh2] 22.85s call test/unit/fem/test_assembler.py::TestPETScAssemblers::test_symmetry_interior_facet_assembly[mesh0] 22.33s call test/unit/fem/test_assemble_submesh.py::test_mixed_dom_codim_0[dS-Discontinuous Lagrange-3-4] 22.27s call test/unit/fem/test_fem_pipeline.py::test_vector_S_tp[3-S-CellType.hexahedron] 20.98s call test/unit/la/test_nullspace.py::test_nullspace_check[2-3-float64] 19.93s call test/unit/la/test_nullspace.py::test_nullspace_check[2-3-complex128] 18.73s call test/unit/fem/test_assemble_submesh.py::test_mixed_dom_codim_0[ds-Discontinuous Lagrange-3-4] 18.72s call test/unit/fem/test_assemble_submesh.py::test_mixed_dom_codim_0[dS-Lagrange-1-4] 18.66s call test/unit/fem/test_assemble_submesh.py::test_mixed_dom_codim_0[dx-Lagrange-1-4] 18.50s call test/unit/fem/test_dof_permuting.py::test_integral[2-hexahedron-AAE] 18.39s call test/unit/fem/test_assemble_submesh.py::test_mixed_dom_codim_0[dS-Discontinuous Lagrange-1-4] = 2517 passed, 96 skipped, 27 xfailed, 5 xpassed, 79 warnings in 6090.56s (1:41:30) = I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.12_dolfinx-complex * Building wheel... *** scikit-build-core 0.10.7 using CMake 3.31.1 (wheel) *** Configuring CMake... loading initial cache file /tmp/tmp3zguwhbu/build/CMakeInit.txt Re-run cmake no build system arguments -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python: /usr/bin/python3.12 (found version "3.12.7") found components: Interpreter Development Development.Module Development.Embed -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Checking for Basix hints with /usr/bin/python3.12 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.1", minimum required is "2.8.1") found components: CXX -- Found DOLFINx at /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx -- Found petsc4py include directory at /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -- Found mpi4py include directory at /usr/lib/python3/dist-packages/mpi4py/include -- Configuring done (19.0s) -- Generating done (0.1s) -- Build files have been written to: /tmp/tmp3zguwhbu/build *** Building project with Unix Makefiles... 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[ 55%] test/unit/fem/test_petsc_nonlinear_assembler.py ...... [ 56%] test/unit/fem/test_petsc_solver_wrappers.py .. [ 56%] test/unit/fem/test_quadrature_elements.py .............................. [ 57%] ...... [ 57%] test/unit/fem/test_special_functions.py ... [ 57%] test/unit/fem/test_symmetric_tensor.py ........ [ 57%] test/unit/fem/test_symmetry.py ......................................... [ 59%] ....................................................... [ 61%] test/unit/fem/test_vector_assemble.py .. [ 61%] test/unit/fem/test_vector_function.py .......... [ 62%] test/unit/geometry/test_bounding_box_tree.py ........................... [ 63%] ................................. [ 64%] test/unit/geometry/test_gjk.py ......................................... [ 65%] ...................... [ 66%] test/unit/graph/test_adjacencylist.py .. [ 66%] test/unit/io/test_adios2.py ............................................ [ 68%] .....ssssssss [ 68%] test/unit/io/test_vtk.py ....................... [ 69%] test/unit/io/test_xdmf_function.py ..................................... [ 71%] ...........................................s [ 72%] test/unit/io/test_xdmf_mesh.py ..........ss............................. [ 74%] ................................... [ 75%] test/unit/io/test_xdmf_meshdata.py .. [ 75%] test/unit/io/test_xdmf_meshtags.py .... [ 75%] test/unit/la/test_matrix_csr.py ............................ [ 77%] test/unit/la/test_matrix_vector.py ............xxx....xxx....xxxxxxxxxx [ 78%] test/unit/la/test_nullspace.py ................................ [ 79%] test/unit/la/test_sparsity_pattern.py . [ 79%] test/unit/la/test_vector_scatter.py ........... [ 80%] test/unit/mesh/test_cell.py ... [ 80%] test/unit/mesh/test_create_mixed_mesh.py . [ 80%] test/unit/mesh/test_dual_graph.py . [ 80%] test/unit/mesh/test_face.py s. [ 80%] test/unit/mesh/test_ghost_mesh.py X..X...X [ 80%] test/unit/mesh/test_higher_order_mesh.py ............................... [ 81%] ....................x...x..........xx..xx.......ssssssssssssssssssssssss [ 84%] .................. [ 85%] test/unit/mesh/test_manifold_point_search.py . [ 85%] test/unit/mesh/test_mesh.py ....................ss....s................. [ 86%] ........................................................................ [ 89%] ........................................................................ [ 92%] ...................................................................... [ 95%] test/unit/mesh/test_mesh_partitioners.py ..ss..ss..ss..ss..ss..ss....... [ 96%] . [ 96%] test/unit/mesh/test_meshtags.py .... [ 96%] test/unit/mesh/test_mixed_topology.py .... [ 96%] test/unit/nls/test_newton.py ... [ 96%] test/unit/refinement/test_interval.py .................................. [ 97%] ...................................... [ 99%] test/unit/refinement/test_refinement.py ................. [100%] =============================== warnings summary =============================== test/unit/fem/test_discrete_operators.py: 72 warnings /build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.12_dolfinx-complex/build/test/unit/fem/test_discrete_operators.py:253: ComplexWarning: Casting complex values to real discards the imaginary part ux[: len(u.x.array)] = u.x.array[:] test/unit/fem/test_expression.py::test_facet_expression[complex64] test/unit/fem/test_expression.py::test_facet_expression[complex128] /usr/lib/python3/dist-packages/ffcx/element_interface.py:47: ComplexWarning: Casting complex values to real discards the imaginary part return np.asarray( test/unit/fem/test_function.py::test_cffi_expression[float32-float] test/unit/fem/test_function.py::test_cffi_expression[float64-double] /usr/lib/python3/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.12_dolfinx-complex/build/../README.md' cannot be found for path in _filter_existing_files(_filepaths) test/unit/fem/test_function.py::test_cffi_expression[float32-float] test/unit/fem/test_function.py::test_cffi_expression[float64-double] /usr/lib/python3/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/build/reproducible-path/fenics-dolfinx-0.9.0/.pybuild/cpython3_3.12_dolfinx-complex/build/COPYING.LESSER' cannot be found for path in _filter_existing_files(_filepaths) test/unit/fem/test_function.py::test_cffi_expression[float32-float] /usr/lib/python3/dist-packages/setuptools/command/easy_install.py:41: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================= slowest 20 durations ============================= 40.37s call test/unit/fem/test_assembler.py::TestPETScAssemblers::test_symmetry_interior_facet_assembly[mesh1] 19.86s call test/unit/la/test_nullspace.py::test_nullspace_check[2-3-complex128] 17.43s call test/unit/la/test_nullspace.py::test_nullspace_check[2-3-float32] 16.86s call test/unit/la/test_nullspace.py::test_nullspace_check[2-3-complex64] 16.32s call test/unit/la/test_nullspace.py::test_nullspace_check[2-3-float64] 13.65s call test/unit/fem/test_assembler.py::TestPETScAssemblers::test_assembly_solve_taylor_hood[mesh2] 13.22s call test/unit/fem/test_petsc_nonlinear_assembler.py::TestNLSPETSc::test_assembly_solve_taylor_hood_nl[mesh2] 12.90s call test/unit/fem/test_fem_pipeline.py::test_NC_hex[3-NCF-CellType.hexahedron] 12.76s call test/unit/fem/test_assembler.py::TestPETScAssemblers::test_symmetry_interior_facet_assembly[mesh0] 12.60s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name0] 12.11s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name1] 12.03s call test/unit/fem/test_element_integrals.py::test_facet_normals[complex128-CellType.hexahedron] 11.99s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[2-DQ-CellType.hexahedron] 11.49s call test/unit/fem/test_fem_pipeline.py::test_NC_hex[3-NCE-CellType.hexahedron] 10.93s call test/unit/fem/test_fem_pipeline.py::test_BDM_N2curl_simplex_highest_order[3-BDM-CellType.tetrahedron] 10.70s call test/unit/fem/test_fem_pipeline.py::test_DPC_hex[2-DPC-CellType.hexahedron] 10.64s call test/unit/la/test_nullspace.py::test_nullspace_check[1-3-complex128] 10.16s call test/unit/mesh/test_higher_order_mesh.py::test_submesh[float64-4] 10.11s call test/unit/fem/test_fem_pipeline.py::test_P_tp[3-Q-CellType.hexahedron] 10.01s call test/unit/fem/test_petsc_nonlinear_assembler.py::TestNLSPETSc::test_assembly_solve_taylor_hood_nl[mesh0] = 2517 passed, 96 skipped, 27 xfailed, 5 xpassed, 79 warnings in 3435.75s (0:57:15) = chrpath -d /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp*/usr/lib/python*/dist-packages/dolfinx/*.so sed -i "s/-D_FORTIFY_SOURCE=2//g" /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp*/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx*.pc sed -i "s|-DNDEBUG||g" /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp*/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx*.pc if [ "x" != "xno" ]; then \ case " mips64el hurd-i386 m68k sh4 " in \ *\ amd64\ *) echo "ALL tests have been disabled on amd64";; \ *) set -e; \ export CTEST_OUTPUT_ON_FAILURE=1; \ for build in real complex; do \ echo "== testing $build number build =="; \ builddir=/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-${build}; \ for mytest in test demo; do \ echo "running tests from $mytest for $build build"; \ testdir=${builddir}/run_${mytest}; \ mkdir -p $testdir; \ cd $testdir; \ if [ "x" != "x" ]; then echo "set(CTEST_CUSTOM_TESTS_IGNORE )" >> CTestCustom.cmake; fi; \ PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-${build} SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-${build} cmake -DCMAKE_MODULE_PATH=/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-${build}/usr/lib/x86_64-linux-gnu/cmake/dolfinx \ -DDOLFINX_DIR=/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-${build}/usr/lib/x86_64-linux-gnu/cmake/dolfinx \ -DMPIEXEC_PARAMS:STRING="--oversubscribe" \ /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/${mytest}; \ make all VERBOSE=1; \ OMPI_ALLOW_RUN_AS_ROOT=1 OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1 make test VERBOSE=1; \ done; \ cd /build/reproducible-path/fenics-dolfinx-0.9.0; \ done; \ esac; \ fi == testing real number build == running tests from test for real build -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Checking for Basix hints with /usr/bin/python3 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.1", minimum required is "2.8.1") found components: CXX -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Configuring done (9.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: MPIEXEC_PARAMS -- Build files have been written to: /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test -B/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test/CMakeFiles /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test' make -f CMakeFiles/unittests.dir/build.make CMakeFiles/unittests.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test' [ 5%] Compile poisson.py using FFCx ffcx /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/poisson.py cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test/CMakeFiles/unittests.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test' make -f CMakeFiles/unittests.dir/build.make CMakeFiles/unittests.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test' [ 11%] Building CXX object CMakeFiles/unittests.dir/main.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/main.cpp.o -MF CMakeFiles/unittests.dir/main.cpp.o.d -o CMakeFiles/unittests.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/main.cpp [ 17%] Building CXX object CMakeFiles/unittests.dir/vector.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/vector.cpp.o -MF CMakeFiles/unittests.dir/vector.cpp.o.d -o CMakeFiles/unittests.dir/vector.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/vector.cpp [ 23%] Building CXX object CMakeFiles/unittests.dir/matrix.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 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-isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/io.cpp.o -MF CMakeFiles/unittests.dir/io.cpp.o.d -o CMakeFiles/unittests.dir/io.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/io.cpp [ 35%] Building CXX object CMakeFiles/unittests.dir/common/sub_systems_manager.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem 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CMakeFiles/unittests.dir/common/sort.cpp.o CMakeFiles/unittests.dir/fem/functionspace.cpp.o CMakeFiles/unittests.dir/mesh/distributed_mesh.cpp.o CMakeFiles/unittests.dir/mesh/generation.cpp.o CMakeFiles/unittests.dir/common/CIFailure.cpp.o CMakeFiles/unittests.dir/mesh/refinement/interval.cpp.o CMakeFiles/unittests.dir/mesh/refinement/option.cpp.o CMakeFiles/unittests.dir/mesh/refinement/rectangle.cpp.o CMakeFiles/unittests.dir/poisson.c.o -o unittests -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib /usr/lib/libCatch2Main.a /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9.0 /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test' [100%] Built target unittests make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test' make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test' Running tests... /usr/bin/ctest --force-new-ctest-process Test project /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test Start 1: unittests 1/1 Test #1: unittests ........................ Passed 2.20 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 2.23 sec make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_test' running tests from demo for real build -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Checking for Basix hints with /usr/bin/python3 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.1", minimum required is "2.8.1") found components: CXX -- Looking for PETSC_USE_REAL_DOUBLE -- Looking for PETSC_USE_REAL_DOUBLE - found -- Performing Test HAVE_NO_MULTLINE -- Performing Test HAVE_NO_MULTLINE - Success -- Configuring done (7.6s) -- Generating done (0.1s) -- Build files have been written to: /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo -B/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/CMakeFiles /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' make -f biharmonic/CMakeFiles/demo_biharmonic.dir/build.make biharmonic/CMakeFiles/demo_biharmonic.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 3%] Compile biharmonic.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic && ffcx /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic/biharmonic.py --scalar_type=float64 cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic/CMakeFiles/demo_biharmonic.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' make -f biharmonic/CMakeFiles/demo_biharmonic.dir/build.make biharmonic/CMakeFiles/demo_biharmonic.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 7%] Building CXX object biharmonic/CMakeFiles/demo_biharmonic.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT biharmonic/CMakeFiles/demo_biharmonic.dir/main.cpp.o -MF CMakeFiles/demo_biharmonic.dir/main.cpp.o.d -o CMakeFiles/demo_biharmonic.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic/main.cpp [ 11%] Building C object biharmonic/CMakeFiles/demo_biharmonic.dir/biharmonic.c.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT biharmonic/CMakeFiles/demo_biharmonic.dir/biharmonic.c.o -MF CMakeFiles/demo_biharmonic.dir/biharmonic.c.o.d -o CMakeFiles/demo_biharmonic.dir/biharmonic.c.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic/biharmonic.c [ 15%] Linking CXX executable demo_biharmonic cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_biharmonic.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_biharmonic.dir/link.d CMakeFiles/demo_biharmonic.dir/main.cpp.o CMakeFiles/demo_biharmonic.dir/biharmonic.c.o -o demo_biharmonic -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 15%] Built target demo_biharmonic make -f codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/build.make codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 19%] Compile mixed_codim0.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/codim_0_assembly && ffcx /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly/mixed_codim0.py --scalar_type=float64 cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/codim_0_assembly /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' make -f codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/build.make codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 23%] Building CXX object codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/codim_0_assembly && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/codim_0_assembly -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/main.cpp.o -MF CMakeFiles/demo_codim_0_assembly.dir/main.cpp.o.d -o CMakeFiles/demo_codim_0_assembly.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly/main.cpp [ 26%] Building C object codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/mixed_codim0.c.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/codim_0_assembly && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/codim_0_assembly -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/mixed_codim0.c.o -MF CMakeFiles/demo_codim_0_assembly.dir/mixed_codim0.c.o.d -o CMakeFiles/demo_codim_0_assembly.dir/mixed_codim0.c.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/codim_0_assembly/mixed_codim0.c [ 30%] Linking CXX executable demo_codim_0_assembly cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/codim_0_assembly && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_codim_0_assembly.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_codim_0_assembly.dir/link.d CMakeFiles/demo_codim_0_assembly.dir/main.cpp.o CMakeFiles/demo_codim_0_assembly.dir/mixed_codim0.c.o -o demo_codim_0_assembly -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 30%] Built target demo_codim_0_assembly make -f custom_kernel/CMakeFiles/demo_custom_kernel.dir/build.make custom_kernel/CMakeFiles/demo_custom_kernel.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/custom_kernel /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/custom_kernel /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/custom_kernel/CMakeFiles/demo_custom_kernel.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' make -f custom_kernel/CMakeFiles/demo_custom_kernel.dir/build.make custom_kernel/CMakeFiles/demo_custom_kernel.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 34%] Building CXX object custom_kernel/CMakeFiles/demo_custom_kernel.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/custom_kernel && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/custom_kernel -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/custom_kernel -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT custom_kernel/CMakeFiles/demo_custom_kernel.dir/main.cpp.o -MF CMakeFiles/demo_custom_kernel.dir/main.cpp.o.d -o CMakeFiles/demo_custom_kernel.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/custom_kernel/main.cpp [ 38%] Linking CXX executable demo_custom_kernel cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/custom_kernel && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_custom_kernel.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_custom_kernel.dir/link.d CMakeFiles/demo_custom_kernel.dir/main.cpp.o -o demo_custom_kernel -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 38%] Built target demo_custom_kernel make -f poisson/CMakeFiles/demo_poisson.dir/build.make poisson/CMakeFiles/demo_poisson.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 42%] Compile poisson.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson && ffcx /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson/poisson.py --scalar_type=float64 cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson/CMakeFiles/demo_poisson.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' make -f poisson/CMakeFiles/demo_poisson.dir/build.make poisson/CMakeFiles/demo_poisson.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 46%] Building CXX object poisson/CMakeFiles/demo_poisson.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT poisson/CMakeFiles/demo_poisson.dir/main.cpp.o -MF CMakeFiles/demo_poisson.dir/main.cpp.o.d -o CMakeFiles/demo_poisson.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson/main.cpp [ 50%] Building C object poisson/CMakeFiles/demo_poisson.dir/poisson.c.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT poisson/CMakeFiles/demo_poisson.dir/poisson.c.o -MF CMakeFiles/demo_poisson.dir/poisson.c.o.d -o CMakeFiles/demo_poisson.dir/poisson.c.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson/poisson.c [ 53%] Linking CXX executable demo_poisson cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_poisson.dir/link.d CMakeFiles/demo_poisson.dir/main.cpp.o CMakeFiles/demo_poisson.dir/poisson.c.o -o demo_poisson -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 53%] Built target demo_poisson make -f poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/build.make poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 57%] Compile poisson.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free && ffcx /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free/poisson.py --scalar_type=float64 cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' make -f poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/build.make poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 61%] Building CXX object poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o -MF CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o.d -o CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free/main.cpp [ 65%] Building C object poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o -MF CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o.d -o CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free/poisson.c [ 69%] Linking CXX executable demo_poisson_matrix_free cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson_matrix_free.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_poisson_matrix_free.dir/link.d CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o -o demo_poisson_matrix_free -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 69%] Built target demo_poisson_matrix_free make -f hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/build.make hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 73%] Compile hyperelasticity.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity && ffcx /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/hyperelasticity/hyperelasticity.py --scalar_type=float64 cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/hyperelasticity /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' make -f hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/build.make hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 76%] Building CXX object hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/hyperelasticity -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/main.cpp.o -MF CMakeFiles/demo_hyperelasticity.dir/main.cpp.o.d -o CMakeFiles/demo_hyperelasticity.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/hyperelasticity/main.cpp [ 80%] Building C object hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/hyperelasticity.c.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/hyperelasticity -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/hyperelasticity.c.o -MF CMakeFiles/demo_hyperelasticity.dir/hyperelasticity.c.o.d -o CMakeFiles/demo_hyperelasticity.dir/hyperelasticity.c.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity/hyperelasticity.c [ 84%] Linking CXX executable demo_hyperelasticity cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_hyperelasticity.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_hyperelasticity.dir/link.d CMakeFiles/demo_hyperelasticity.dir/main.cpp.o CMakeFiles/demo_hyperelasticity.dir/hyperelasticity.c.o -o demo_hyperelasticity -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 84%] Built target demo_hyperelasticity make -f interpolation-io/CMakeFiles/demo_interpolation-io.dir/build.make interpolation-io/CMakeFiles/demo_interpolation-io.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation-io /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/interpolation-io /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/interpolation-io/CMakeFiles/demo_interpolation-io.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' make -f interpolation-io/CMakeFiles/demo_interpolation-io.dir/build.make interpolation-io/CMakeFiles/demo_interpolation-io.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 88%] Building CXX object interpolation-io/CMakeFiles/demo_interpolation-io.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/interpolation-io && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/interpolation-io -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation-io -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT interpolation-io/CMakeFiles/demo_interpolation-io.dir/main.cpp.o -MF CMakeFiles/demo_interpolation-io.dir/main.cpp.o.d -o CMakeFiles/demo_interpolation-io.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation-io/main.cpp [ 92%] Linking CXX executable demo_interpolation-io cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/interpolation-io && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_interpolation-io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_interpolation-io.dir/link.d "CMakeFiles/demo_interpolation-io.dir/main.cpp.o" -o demo_interpolation-io -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 92%] Built target demo_interpolation-io make -f interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/build.make interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation_different_meshes /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/interpolation_different_meshes /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' make -f interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/build.make interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [ 96%] Building CXX object interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/interpolation_different_meshes && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/interpolation_different_meshes -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation_different_meshes -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o -MF CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o.d -o CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation_different_meshes/main.cpp [100%] Linking CXX executable demo_interpolation_different_meshes cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/interpolation_different_meshes && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_interpolation_different_meshes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_interpolation_different_meshes.dir/link.d CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o -o demo_interpolation_different_meshes -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' [100%] Built target demo_interpolation_different_meshes make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' Running tests... /usr/bin/ctest --force-new-ctest-process Test project /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo Start 1: demo_biharmonic_mpi_2 1/24 Test #1: demo_biharmonic_mpi_2 ........................ Passed 4.26 sec Start 2: demo_biharmonic_mpi_3 2/24 Test #2: demo_biharmonic_mpi_3 ........................ Passed 2.88 sec Start 3: demo_biharmonic_serial 3/24 Test #3: demo_biharmonic_serial ....................... Passed 0.95 sec Start 4: demo_codim_0_assembly_mpi_2 4/24 Test #4: demo_codim_0_assembly_mpi_2 .................. Passed 1.30 sec Start 5: demo_codim_0_assembly_mpi_3 5/24 Test #5: demo_codim_0_assembly_mpi_3 .................. Passed 1.53 sec Start 6: demo_codim_0_assembly_serial 6/24 Test #6: demo_codim_0_assembly_serial ................. Passed 0.95 sec Start 7: demo_custom_kernel_mpi_2 7/24 Test #7: demo_custom_kernel_mpi_2 ..................... Passed 9.29 sec Start 8: demo_custom_kernel_mpi_3 8/24 Test #8: demo_custom_kernel_mpi_3 ..................... Passed 2.96 sec Start 9: demo_custom_kernel_serial 9/24 Test #9: demo_custom_kernel_serial .................... Passed 1.44 sec Start 10: demo_poisson_mpi_2 10/24 Test #10: demo_poisson_mpi_2 ........................... Passed 0.77 sec Start 11: demo_poisson_mpi_3 11/24 Test #11: demo_poisson_mpi_3 ........................... Passed 0.84 sec Start 12: demo_poisson_serial 12/24 Test #12: demo_poisson_serial .......................... Passed 0.54 sec Start 13: demo_poisson_matrix_free_mpi_2 13/24 Test #13: demo_poisson_matrix_free_mpi_2 ............... Passed 1.38 sec Start 14: demo_poisson_matrix_free_mpi_3 14/24 Test #14: demo_poisson_matrix_free_mpi_3 ............... Passed 1.91 sec Start 15: demo_poisson_matrix_free_serial 15/24 Test #15: demo_poisson_matrix_free_serial .............. Passed 0.54 sec Start 16: demo_hyperelasticity_mpi_2 16/24 Test #16: demo_hyperelasticity_mpi_2 ................... Passed 2.77 sec Start 17: demo_hyperelasticity_mpi_3 17/24 Test #17: demo_hyperelasticity_mpi_3 ................... Passed 3.41 sec Start 18: demo_hyperelasticity_serial 18/24 Test #18: demo_hyperelasticity_serial .................. Passed 2.03 sec Start 19: demo_interpolation-io_mpi_2 19/24 Test #19: demo_interpolation-io_mpi_2 .................. Passed 0.63 sec Start 20: demo_interpolation-io_mpi_3 20/24 Test #20: demo_interpolation-io_mpi_3 .................. Passed 0.69 sec Start 21: demo_interpolation-io_serial 21/24 Test #21: demo_interpolation-io_serial ................. Passed 0.82 sec Start 22: demo_interpolation_different_meshes_mpi_2 22/24 Test #22: demo_interpolation_different_meshes_mpi_2 .... Passed 4.77 sec Start 23: demo_interpolation_different_meshes_mpi_3 23/24 Test #23: demo_interpolation_different_meshes_mpi_3 .... Passed 17.29 sec Start 24: demo_interpolation_different_meshes_serial 24/24 Test #24: demo_interpolation_different_meshes_serial ... Passed 2.91 sec 100% tests passed, 0 tests failed out of 24 Total Test time (real) = 66.97 sec make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-real/run_demo' == testing complex number build == running tests from test for complex build -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Checking for Basix hints with /usr/bin/python3 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.1", minimum required is "2.8.1") found components: CXX -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Configuring done (15.2s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: MPIEXEC_PARAMS -- Build files have been written to: /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test -B/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test/CMakeFiles /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test' make -f CMakeFiles/unittests.dir/build.make CMakeFiles/unittests.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test' [ 5%] Compile poisson.py using FFCx ffcx /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/poisson.py cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test/CMakeFiles/unittests.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test' make -f CMakeFiles/unittests.dir/build.make CMakeFiles/unittests.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test' [ 11%] Building CXX object CMakeFiles/unittests.dir/main.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/main.cpp.o -MF CMakeFiles/unittests.dir/main.cpp.o.d -o CMakeFiles/unittests.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/main.cpp [ 17%] Building CXX object CMakeFiles/unittests.dir/vector.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/vector.cpp.o -MF CMakeFiles/unittests.dir/vector.cpp.o.d -o CMakeFiles/unittests.dir/vector.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/vector.cpp [ 23%] Building CXX object CMakeFiles/unittests.dir/matrix.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/matrix.cpp.o -MF CMakeFiles/unittests.dir/matrix.cpp.o.d -o CMakeFiles/unittests.dir/matrix.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/matrix.cpp [ 29%] Building CXX object CMakeFiles/unittests.dir/io.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/io.cpp.o -MF CMakeFiles/unittests.dir/io.cpp.o.d -o CMakeFiles/unittests.dir/io.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/io.cpp [ 35%] Building CXX object CMakeFiles/unittests.dir/common/sub_systems_manager.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/common/sub_systems_manager.cpp.o -MF CMakeFiles/unittests.dir/common/sub_systems_manager.cpp.o.d -o CMakeFiles/unittests.dir/common/sub_systems_manager.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/common/sub_systems_manager.cpp [ 41%] Building CXX object CMakeFiles/unittests.dir/common/index_map.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/common/index_map.cpp.o -MF CMakeFiles/unittests.dir/common/index_map.cpp.o.d -o CMakeFiles/unittests.dir/common/index_map.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/common/index_map.cpp [ 47%] Building CXX object CMakeFiles/unittests.dir/common/sort.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem 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-g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/mesh/distributed_mesh.cpp.o -MF CMakeFiles/unittests.dir/mesh/distributed_mesh.cpp.o.d -o CMakeFiles/unittests.dir/mesh/distributed_mesh.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/mesh/distributed_mesh.cpp [ 64%] Building CXX object CMakeFiles/unittests.dir/mesh/generation.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/mesh/generation.cpp.o -MF CMakeFiles/unittests.dir/mesh/generation.cpp.o.d -o CMakeFiles/unittests.dir/mesh/generation.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/test/mesh/generation.cpp [ 70%] Building CXX object CMakeFiles/unittests.dir/common/CIFailure.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB 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/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/libpetsc_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test' [100%] Built target unittests make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test' make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test' Running tests... /usr/bin/ctest --force-new-ctest-process Test project /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test Start 1: unittests 1/1 Test #1: unittests ........................ Passed 2.81 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 2.82 sec make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_test' running tests from demo for complex build -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Checking for Basix hints with /usr/bin/python3 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.1", minimum required is "2.8.1") found components: CXX -- Looking for PETSC_USE_REAL_DOUBLE -- Looking for PETSC_USE_REAL_DOUBLE - found -- Performing Test HAVE_NO_MULTLINE -- Performing Test HAVE_NO_MULTLINE - Success -- ** This demo does not support complex mode -- Configuring done (25.4s) -- Generating done (0.3s) -- Build files have been written to: /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo -B/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/CMakeFiles /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' make -f biharmonic/CMakeFiles/demo_biharmonic.dir/build.make biharmonic/CMakeFiles/demo_biharmonic.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 4%] Compile biharmonic.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic && ffcx /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic/biharmonic.py --scalar_type=complex128 cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic/CMakeFiles/demo_biharmonic.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' make -f biharmonic/CMakeFiles/demo_biharmonic.dir/build.make biharmonic/CMakeFiles/demo_biharmonic.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 9%] Building CXX object biharmonic/CMakeFiles/demo_biharmonic.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT biharmonic/CMakeFiles/demo_biharmonic.dir/main.cpp.o -MF CMakeFiles/demo_biharmonic.dir/main.cpp.o.d -o CMakeFiles/demo_biharmonic.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic/main.cpp [ 13%] Building C object biharmonic/CMakeFiles/demo_biharmonic.dir/biharmonic.c.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT biharmonic/CMakeFiles/demo_biharmonic.dir/biharmonic.c.o -MF CMakeFiles/demo_biharmonic.dir/biharmonic.c.o.d -o CMakeFiles/demo_biharmonic.dir/biharmonic.c.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic/biharmonic.c [ 18%] Linking CXX executable demo_biharmonic cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_biharmonic.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_biharmonic.dir/link.d CMakeFiles/demo_biharmonic.dir/main.cpp.o CMakeFiles/demo_biharmonic.dir/biharmonic.c.o -o demo_biharmonic -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/libpetsc_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 18%] Built target demo_biharmonic make -f codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/build.make codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 22%] Compile mixed_codim0.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/codim_0_assembly && ffcx /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly/mixed_codim0.py --scalar_type=complex128 cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/codim_0_assembly /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' make -f codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/build.make codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 27%] Building CXX object codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/codim_0_assembly && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/codim_0_assembly -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/main.cpp.o -MF CMakeFiles/demo_codim_0_assembly.dir/main.cpp.o.d -o CMakeFiles/demo_codim_0_assembly.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly/main.cpp [ 31%] Building C object codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/mixed_codim0.c.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/codim_0_assembly && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/codim_0_assembly -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT codim_0_assembly/CMakeFiles/demo_codim_0_assembly.dir/mixed_codim0.c.o -MF CMakeFiles/demo_codim_0_assembly.dir/mixed_codim0.c.o.d -o CMakeFiles/demo_codim_0_assembly.dir/mixed_codim0.c.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/codim_0_assembly/mixed_codim0.c [ 36%] Linking CXX executable demo_codim_0_assembly cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/codim_0_assembly && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_codim_0_assembly.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_codim_0_assembly.dir/link.d CMakeFiles/demo_codim_0_assembly.dir/main.cpp.o CMakeFiles/demo_codim_0_assembly.dir/mixed_codim0.c.o -o demo_codim_0_assembly -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/libpetsc_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 36%] Built target demo_codim_0_assembly make -f custom_kernel/CMakeFiles/demo_custom_kernel.dir/build.make custom_kernel/CMakeFiles/demo_custom_kernel.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/custom_kernel /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/custom_kernel /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/custom_kernel/CMakeFiles/demo_custom_kernel.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' make -f custom_kernel/CMakeFiles/demo_custom_kernel.dir/build.make custom_kernel/CMakeFiles/demo_custom_kernel.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 40%] Building CXX object custom_kernel/CMakeFiles/demo_custom_kernel.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/custom_kernel && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/custom_kernel -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/custom_kernel -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT custom_kernel/CMakeFiles/demo_custom_kernel.dir/main.cpp.o -MF CMakeFiles/demo_custom_kernel.dir/main.cpp.o.d -o CMakeFiles/demo_custom_kernel.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/custom_kernel/main.cpp [ 45%] Linking CXX executable demo_custom_kernel cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/custom_kernel && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_custom_kernel.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_custom_kernel.dir/link.d CMakeFiles/demo_custom_kernel.dir/main.cpp.o -o demo_custom_kernel -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/libpetsc_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 45%] Built target demo_custom_kernel make -f poisson/CMakeFiles/demo_poisson.dir/build.make poisson/CMakeFiles/demo_poisson.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 50%] Compile poisson.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson && ffcx /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson/poisson.py --scalar_type=complex128 cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson/CMakeFiles/demo_poisson.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' make -f poisson/CMakeFiles/demo_poisson.dir/build.make poisson/CMakeFiles/demo_poisson.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 54%] Building CXX object poisson/CMakeFiles/demo_poisson.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT poisson/CMakeFiles/demo_poisson.dir/main.cpp.o -MF CMakeFiles/demo_poisson.dir/main.cpp.o.d -o CMakeFiles/demo_poisson.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson/main.cpp [ 59%] Building C object poisson/CMakeFiles/demo_poisson.dir/poisson.c.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT poisson/CMakeFiles/demo_poisson.dir/poisson.c.o -MF CMakeFiles/demo_poisson.dir/poisson.c.o.d -o CMakeFiles/demo_poisson.dir/poisson.c.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson/poisson.c [ 63%] Linking CXX executable demo_poisson cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_poisson.dir/link.d CMakeFiles/demo_poisson.dir/main.cpp.o CMakeFiles/demo_poisson.dir/poisson.c.o -o demo_poisson -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/libpetsc_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 63%] Built target demo_poisson make -f poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/build.make poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 68%] Compile poisson.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free && ffcx /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free/poisson.py --scalar_type=complex128 cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' make -f poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/build.make poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 72%] Building CXX object poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o -MF CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o.d -o CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free/main.cpp [ 77%] Building C object poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o -MF CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o.d -o CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free/poisson.c [ 81%] Linking CXX executable demo_poisson_matrix_free cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson_matrix_free.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_poisson_matrix_free.dir/link.d CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o -o demo_poisson_matrix_free -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/libpetsc_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 81%] Built target demo_poisson_matrix_free make -f interpolation-io/CMakeFiles/demo_interpolation-io.dir/build.make interpolation-io/CMakeFiles/demo_interpolation-io.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation-io /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation-io /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation-io/CMakeFiles/demo_interpolation-io.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' make -f interpolation-io/CMakeFiles/demo_interpolation-io.dir/build.make interpolation-io/CMakeFiles/demo_interpolation-io.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 86%] Building CXX object interpolation-io/CMakeFiles/demo_interpolation-io.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation-io && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation-io -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation-io -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT interpolation-io/CMakeFiles/demo_interpolation-io.dir/main.cpp.o -MF CMakeFiles/demo_interpolation-io.dir/main.cpp.o.d -o CMakeFiles/demo_interpolation-io.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation-io/main.cpp [ 90%] Linking CXX executable demo_interpolation-io cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation-io && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_interpolation-io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_interpolation-io.dir/link.d "CMakeFiles/demo_interpolation-io.dir/main.cpp.o" -o demo_interpolation-io -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/libpetsc_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 90%] Built target demo_interpolation-io make -f interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/build.make interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation_different_meshes /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation_different_meshes /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' make -f interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/build.make interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [ 95%] Building CXX object interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation_different_meshes && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation_different_meshes -I/build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation_different_meshes -isystem /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -MD -MT interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o -MF CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o.d -o CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation_different_meshes/main.cpp [100%] Linking CXX executable demo_interpolation_different_meshes cd /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation_different_meshes && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_interpolation_different_meshes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,--dependency-file,CMakeFiles/demo_interpolation_different_meshes.dir/link.d CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o -o demo_interpolation_different_meshes -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.9.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.12.0 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.1 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.1 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/libpetsc_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' [100%] Built target demo_interpolation_different_meshes make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' Running tests... /usr/bin/ctest --force-new-ctest-process Test project /build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo Start 1: demo_biharmonic_mpi_2 1/21 Test #1: demo_biharmonic_mpi_2 ........................ Passed 0.80 sec Start 2: demo_biharmonic_mpi_3 2/21 Test #2: demo_biharmonic_mpi_3 ........................ Passed 1.45 sec Start 3: demo_biharmonic_serial 3/21 Test #3: demo_biharmonic_serial ....................... Passed 0.79 sec Start 4: demo_codim_0_assembly_mpi_2 4/21 Test #4: demo_codim_0_assembly_mpi_2 .................. Passed 0.53 sec Start 5: demo_codim_0_assembly_mpi_3 5/21 Test #5: demo_codim_0_assembly_mpi_3 .................. Passed 0.85 sec Start 6: demo_codim_0_assembly_serial 6/21 Test #6: demo_codim_0_assembly_serial ................. Passed 0.57 sec Start 7: demo_custom_kernel_mpi_2 7/21 Test #7: demo_custom_kernel_mpi_2 ..................... Passed 6.24 sec Start 8: demo_custom_kernel_mpi_3 8/21 Test #8: demo_custom_kernel_mpi_3 ..................... Passed 9.37 sec Start 9: demo_custom_kernel_serial 9/21 Test #9: demo_custom_kernel_serial .................... Passed 1.82 sec Start 10: demo_poisson_mpi_2 10/21 Test #10: demo_poisson_mpi_2 ........................... Passed 2.36 sec Start 11: demo_poisson_mpi_3 11/21 Test #11: demo_poisson_mpi_3 ........................... Passed 0.89 sec Start 12: demo_poisson_serial 12/21 Test #12: demo_poisson_serial .......................... Passed 0.70 sec Start 13: demo_poisson_matrix_free_mpi_2 13/21 Test #13: demo_poisson_matrix_free_mpi_2 ............... Passed 1.73 sec Start 14: demo_poisson_matrix_free_mpi_3 14/21 Test #14: demo_poisson_matrix_free_mpi_3 ............... Passed 1.76 sec Start 15: demo_poisson_matrix_free_serial 15/21 Test #15: demo_poisson_matrix_free_serial .............. Passed 0.73 sec Start 16: demo_interpolation-io_mpi_2 16/21 Test #16: demo_interpolation-io_mpi_2 .................. Passed 0.76 sec Start 17: demo_interpolation-io_mpi_3 17/21 Test #17: demo_interpolation-io_mpi_3 .................. Passed 0.76 sec Start 18: demo_interpolation-io_serial 18/21 Test #18: demo_interpolation-io_serial ................. Passed 1.31 sec Start 19: demo_interpolation_different_meshes_mpi_2 19/21 Test #19: demo_interpolation_different_meshes_mpi_2 .... Passed 5.56 sec Start 20: demo_interpolation_different_meshes_mpi_3 20/21 Test #20: demo_interpolation_different_meshes_mpi_3 .... Passed 11.30 sec Start 21: demo_interpolation_different_meshes_serial 21/21 Test #21: demo_interpolation_different_meshes_serial ... Passed 2.87 sec 100% tests passed, 0 tests failed out of 21 Total Test time (real) = 53.19 sec make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex/run_demo' make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' debian/rules override_dh_auto_install-indep make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_auto_install -i --builddir=/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex --destdir=debian/tmp-complex cd obj-x86_64-linux-gnu-complex && make -j20 install DESTDIR=/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.9.0/cpp -B/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.9.0 -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.9 -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets.cmake -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets-relwithdebinfo.cmake -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/defines.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/dolfinx_common.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/dolfinx_doc.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/IndexMap.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/log.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/sort.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/types.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/math.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/MPI.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/Scatterer.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/Table.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/Timer.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/TimeLogger.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/TimeLogManager.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/timing.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/utils.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/Constant.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/CoordinateElement.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/DirichletBC.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/DofMap.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/ElementDofLayout.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/Expression.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/FiniteElement.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/Form.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/Function.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/FunctionSpace.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/assembler.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/assemble_matrix_impl.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/assemble_scalar_impl.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/assemble_vector_impl.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/discreteoperators.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/dofmapbuilder.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/dolfinx_fem.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/interpolate.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/petsc.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/sparsitybuild.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/traits.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/fem/utils.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/geometry/BoundingBoxTree.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/geometry/gjk.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/geometry/dolfinx_geometry.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/geometry/utils.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/graph/AdjacencyList.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/graph/dolfinx_graph.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/graph/ordering.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/graph/partitioners.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/graph/partition.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/dolfinx_io.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/ADIOS2Writers.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/cells.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/HDF5Interface.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/vtk_utils.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/VTKFile.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/XDMFFile.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/xdmf_function.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/xdmf_mesh.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/io/xdmf_utils.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/dolfinx_la.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/MatrixCSR.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/matrix_csr_impl.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/SparsityPattern.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/Vector.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/petsc.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/utils.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/la/slepc.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/dolfinx_mesh.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/Mesh.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/Geometry.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/Topology.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/MeshTags.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/cell_types.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/generation.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/graphbuild.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/permutationcomputation.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/topologycomputation.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/mesh/utils.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/nls/dolfinx_nls.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/nls/NewtonSolver.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/refinement/dolfinx_refinement.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/refinement/interval.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/refinement/plaza.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/refinement/refine.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/refinement/utils.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/refinement/option.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/include/dolfinx/common/version.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfig.cmake -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfigVersion.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx_complex.pc -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf ---------------------------------------------------------------------------- DOLFINx has now been installed in /usr and demo programs have been installed in /usr/share/dolfinx/demo Don't forget to update your environment variables. This can be done easily using the helper file 'dolfinx.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf ---------------------------------------------------------------------------- make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0/obj-x86_64-linux-gnu-complex' (cd cpp/doc; doxygen) warning: Tag 'HTML_TIMESTAMP' at line 1387 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 2055 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Doxygen version used: 1.9.8 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/nls Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/custom_kernel Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation_different_meshes Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation-io Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/hyperelasticity Reading and parsing tag files Parsing files Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/defines.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/defines.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/defines.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/defines.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/dolfinx_common.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/dolfinx_common.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/dolfinx_doc.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/dolfinx_doc.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/IndexMap.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/IndexMap.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/IndexMap.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/IndexMap.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/log.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/log.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/log.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/log.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/math.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/math.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/MPI.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/MPI.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/MPI.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/MPI.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Scatterer.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Scatterer.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/sort.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/sort.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Table.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Table.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Table.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Table.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/TimeLogger.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/TimeLogger.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/TimeLogger.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/TimeLogger.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/TimeLogManager.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/TimeLogManager.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/TimeLogManager.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/TimeLogManager.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Timer.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Timer.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Timer.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Timer.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/timing.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/timing.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/timing.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/timing.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/types.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/types.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/utils.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/utils.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/dolfinx.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/dolfinx.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/assemble_matrix_impl.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/assemble_matrix_impl.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/assemble_scalar_impl.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/assemble_scalar_impl.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/assemble_vector_impl.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/assemble_vector_impl.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/assembler.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/assembler.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/Constant.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/Constant.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/CoordinateElement.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/CoordinateElement.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/CoordinateElement.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/CoordinateElement.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/DirichletBC.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/DirichletBC.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/DirichletBC.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/DirichletBC.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/discreteoperators.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/discreteoperators.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/DofMap.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/DofMap.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/DofMap.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/DofMap.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/dofmapbuilder.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/dofmapbuilder.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/dofmapbuilder.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/dofmapbuilder.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/dolfinx_fem.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/dolfinx_fem.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/ElementDofLayout.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/ElementDofLayout.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/ElementDofLayout.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/ElementDofLayout.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/Expression.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/Expression.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/FiniteElement.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/FiniteElement.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/FiniteElement.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/FiniteElement.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/Form.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/Form.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/Function.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/Function.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/FunctionSpace.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/FunctionSpace.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/interpolate.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/interpolate.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/petsc.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/petsc.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/petsc.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/petsc.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/sparsitybuild.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/sparsitybuild.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/sparsitybuild.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/sparsitybuild.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/traits.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/traits.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/utils.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/utils.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/utils.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/utils.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/BoundingBoxTree.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/BoundingBoxTree.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/dolfinx_geometry.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/dolfinx_geometry.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/gjk.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/gjk.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/utils.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/utils.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/AdjacencyList.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/AdjacencyList.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/dolfinx_graph.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/dolfinx_graph.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/ordering.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/ordering.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/ordering.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/ordering.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/partition.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/partition.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/partition.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/partition.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/partitioners.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/partitioners.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/partitioners.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/partitioners.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/ADIOS2Writers.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/ADIOS2Writers.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/ADIOS2Writers.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/ADIOS2Writers.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/cells.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/cells.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/cells.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/cells.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/dolfinx_io.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/dolfinx_io.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/HDF5Interface.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/HDF5Interface.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/HDF5Interface.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/HDF5Interface.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/vtk_utils.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/vtk_utils.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/vtk_utils.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/vtk_utils.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/VTKFile.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/VTKFile.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/VTKFile.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/VTKFile.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_function.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_function.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_function.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_function.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_mesh.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_mesh.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_mesh.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_mesh.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_utils.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_utils.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_utils.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_utils.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/XDMFFile.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/XDMFFile.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/XDMFFile.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/XDMFFile.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/dolfinx_la.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/dolfinx_la.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/matrix_csr_impl.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/matrix_csr_impl.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/MatrixCSR.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/MatrixCSR.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/petsc.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/petsc.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/petsc.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/petsc.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/slepc.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/slepc.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/slepc.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/slepc.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/SparsityPattern.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/SparsityPattern.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/SparsityPattern.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/SparsityPattern.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/utils.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/utils.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/Vector.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/Vector.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/cell_types.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/cell_types.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/cell_types.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/cell_types.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/dolfinx_mesh.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/dolfinx_mesh.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/generation.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/generation.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/Geometry.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/Geometry.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/graphbuild.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/graphbuild.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/graphbuild.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/graphbuild.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/Mesh.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/Mesh.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/MeshTags.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/MeshTags.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/permutationcomputation.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/permutationcomputation.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/permutationcomputation.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/permutationcomputation.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/Topology.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/Topology.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/Topology.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/Topology.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/topologycomputation.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/topologycomputation.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/topologycomputation.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/topologycomputation.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/utils.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/utils.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/utils.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/utils.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/nls/dolfinx_nls.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/nls/dolfinx_nls.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/nls/NewtonSolver.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/nls/NewtonSolver.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/nls/NewtonSolver.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/nls/NewtonSolver.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/dolfinx_refinement.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/dolfinx_refinement.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/interval.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/interval.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/option.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/option.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/plaza.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/plaza.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/plaza.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/plaza.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/refine.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/refine.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/utils.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/utils.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/utils.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/utils.h... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic/biharmonic.py... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic/biharmonic.py... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic/main.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic/main.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly/main.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly/main.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly/mixed_codim0.py... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly/mixed_codim0.py... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/custom_kernel/main.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/custom_kernel/main.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/hyperelasticity/hyperelasticity.py... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/hyperelasticity/hyperelasticity.py... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/hyperelasticity/main.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/hyperelasticity/main.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation-io/main.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation-io/main.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation_different_meshes/main.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation_different_meshes/main.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson/main.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson/main.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson/poisson.py... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson/poisson.py... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free/main.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free/main.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free/poisson.py... Parsing file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free/poisson.py... Reading /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/README.md... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/defines.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/dolfinx_common.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/dolfinx_doc.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/IndexMap.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/log.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/math.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/MPI.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Scatterer.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/sort.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Table.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/TimeLogger.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/TimeLogManager.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/Timer.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/timing.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/types.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/dolfinx.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/assemble_matrix_impl.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/assemble_scalar_impl.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/assemble_vector_impl.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/assembler.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/Constant.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/CoordinateElement.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/DirichletBC.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/discreteoperators.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/DofMap.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/dofmapbuilder.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/dolfinx_fem.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/ElementDofLayout.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/Expression.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/FiniteElement.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/Form.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/Function.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/FunctionSpace.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/interpolate.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/sparsitybuild.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/traits.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/BoundingBoxTree.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/dolfinx_geometry.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/gjk.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/AdjacencyList.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/dolfinx_graph.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/ordering.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/partition.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/partitioners.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/ADIOS2Writers.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/cells.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/dolfinx_io.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/HDF5Interface.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/vtk_utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/VTKFile.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_function.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_mesh.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/xdmf_utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/XDMFFile.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/dolfinx_la.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/matrix_csr_impl.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/MatrixCSR.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/petsc.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/petsc.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/slepc.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/SparsityPattern.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/Vector.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/cell_types.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/dolfinx_mesh.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/generation.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/Geometry.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/graphbuild.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/Mesh.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/MeshTags.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/permutationcomputation.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/Topology.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/topologycomputation.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/nls/dolfinx_nls.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/nls/NewtonSolver.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/dolfinx_refinement.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/interval.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/option.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/plaza.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/refine.h... Generating file documentation... Generating docs for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/DofMap.h... Generating docs for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/utils.h... Generating docs for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/utils.h... Generating docs for file /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/ADIOS2Writers.h... Generating page documentation... Generating docs for page md__2build_2reproducible-path_2fenics-dolfinx-0_89_80_2cpp_2demo_2README... Generating docs for page todo... Generating group documentation... Generating class documentation... Generating docs for compound HyperElasticProblem... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating docs for compound basix::FiniteElement... Generating docs for namespace dolfinx Generating docs for compound dolfinx::Table... Generating docs for concept dolfinx::scalar... Generating docs for namespace dolfinx::common Generating docs for compound dolfinx::common::IndexMap... Generating docs for compound dolfinx::common::Scatterer... Generating docs for compound dolfinx::common::TimeLogger... Generating docs for compound dolfinx::common::TimeLogManager... Generating docs for compound dolfinx::common::Timer... Generating docs for namespace dolfinx::fem Generating docs for compound dolfinx::fem::Constant... Generating docs for compound dolfinx::fem::CoordinateElement... Generating docs for compound dolfinx::fem::DirichletBC... Generating docs for compound dolfinx::fem::DofMap... Generating docs for compound dolfinx::fem::ElementDofLayout... Generating docs for compound dolfinx::fem::Expression... Generating docs for compound dolfinx::fem::FiniteElement... Generating docs for compound dolfinx::fem::Form... Generating docs for compound dolfinx::fem::Function... Generating docs for compound dolfinx::fem::FunctionSpace... Generating docs for compound dolfinx::fem::integral_data... Generating docs for concept dolfinx::fem::MDSpan... Generating docs for concept dolfinx::fem::DofTransformKernel... Generating docs for concept dolfinx::fem::FEkernel... Generating docs for concept dolfinx::fem::impl::FetchCells... Generating docs for namespace dolfinx::fem::petsc Generating docs for namespace dolfinx::fem::sparsitybuild Generating docs for namespace dolfinx::geometry Generating docs for compound dolfinx::geometry::BoundingBoxTree... Generating docs for compound dolfinx::geometry::PointOwnershipData... Generating docs for namespace dolfinx::graph Generating docs for compound dolfinx::graph::AdjacencyList... Generating docs for namespace dolfinx::graph::build Generating docs for namespace dolfinx::graph::kahip Generating docs for namespace dolfinx::io Generating docs for compound dolfinx::io::ADIOS2Writer... Generating docs for compound dolfinx::io::VTKFile... Generating docs for compound dolfinx::io::XDMFFile... Generating docs for namespace dolfinx::io::cells Generating docs for namespace dolfinx::io::xdmf_function Generating docs for namespace dolfinx::io::xdmf_mesh Generating docs for namespace dolfinx::la Generating docs for compound dolfinx::la::MatrixCSR... Generating docs for compound dolfinx::la::SLEPcEigenSolver... Generating docs for compound dolfinx::la::SparsityPattern... Generating docs for compound dolfinx::la::Vector... Generating docs for concept dolfinx::la::MatSet... Generating docs for namespace dolfinx::la::petsc Generating docs for compound dolfinx::la::petsc::KrylovSolver... Generating docs for compound dolfinx::la::petsc::Matrix... Generating docs for compound dolfinx::la::petsc::Operator... Generating docs for compound dolfinx::la::petsc::Vector... Generating docs for namespace dolfinx::la::petsc::options Generating docs for namespace dolfinx::mesh Generating docs for compound dolfinx::mesh::Geometry... Generating docs for compound dolfinx::mesh::Mesh... Generating docs for compound dolfinx::mesh::MeshTags... Generating docs for compound dolfinx::mesh::Topology... Generating docs for concept dolfinx::mesh::MarkerFn... Generating docs for namespace dolfinx::MPI Generating docs for compound dolfinx::MPI::Comm... Generating docs for compound dolfinx::MPI::dependent_false... Generating docs for namespace dolfinx::nls Generating docs for compound dolfinx::nls::petsc::NewtonSolver... Generating docs for namespace dolfinx::refinement Generating docs for namespace dolfinx::refinement::plaza Generating graph info page... Generating directory documentation... Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/custom_kernel Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/hyperelasticity Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation-io Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation_different_meshes Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/nls Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement Generating index page... Generating main page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating graphical class hierarchy... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class dolfinx::io::ADIOS2Writer Generating XML output for class dolfinx::graph::AdjacencyList Generating XML output for class dolfinx::geometry::BoundingBoxTree Generating XML output for class dolfinx::MPI::Comm Generating XML output for class dolfinx::fem::Constant Generating XML output for class dolfinx::fem::CoordinateElement Generating XML output for class dolfinx::MPI::dependent_false Generating XML output for class dolfinx::fem::DirichletBC Generating XML output for class dolfinx::fem::DofMap Generating XML output for class dolfinx::fem::ElementDofLayout Generating XML output for class dolfinx::fem::Expression Generating XML output for class dolfinx::io::FidesWriter Generating XML output for class basix::FiniteElement Generating XML output for class dolfinx::fem::FiniteElement Generating XML output for class dolfinx::fem::Form Generating XML output for class dolfinx::fem::Function Generating XML output for class dolfinx::fem::FunctionSpace Generating XML output for class dolfinx::mesh::Geometry Generating XML output for class HyperElasticProblem Generating XML output for class dolfinx::common::IndexMap Generating XML output for class dolfinx::fem::integral_data Generating XML output for class dolfinx::la::petsc::KrylovSolver Generating XML output for class dolfinx::la::petsc::Matrix Generating XML output for class dolfinx::la::MatrixCSR Generating XML output for class dolfinx::mesh::Mesh Generating XML output for class dolfinx::mesh::MeshTags Generating XML output for class dolfinx::nls::petsc::NewtonSolver Generating XML output for class dolfinx::la::petsc::Operator Generating XML output for class dolfinx::geometry::PointOwnershipData Generating XML output for class dolfinx::scalar_value_type Generating XML output for class dolfinx::scalar_value_type< T, std::void_t< typename T::value_type > > Generating XML output for class dolfinx::common::Scatterer Generating XML output for class dolfinx::la::SLEPcEigenSolver Generating XML output for class dolfinx::la::SparsityPattern Generating XML output for class dolfinx::Table Generating XML output for class dolfinx::common::TimeLogger Generating XML output for class dolfinx::common::TimeLogManager Generating XML output for class dolfinx::common::Timer Generating XML output for class dolfinx::mesh::Topology Generating XML output for class dolfinx::la::petsc::Vector Generating XML output for class dolfinx::la::Vector Generating XML output for class dolfinx::io::VTKFile Generating XML output for class dolfinx::io::VTXWriter Generating XML output for class dolfinx::io::XDMFFile Generating XML output for concept dolfinx::fem::DofTransformKernel Generating XML output for concept dolfinx::fem::FEkernel Generating XML output for concept dolfinx::fem::impl::FetchCells Generating XML output for concept dolfinx::fem::MDSpan Generating XML output for concept dolfinx::la::MatSet Generating XML output for concept dolfinx::mesh::MarkerFn Generating XML output for concept dolfinx::scalar Generating XML output for namespace @104 Generating XML output for namespace @108 Generating XML output for namespace @110 Generating XML output for namespace @112 Generating XML output for namespace @117 Generating XML output for namespace @122 Generating XML output for namespace @13 Generating XML output for namespace @33 Generating XML output for namespace @36 Generating XML output for namespace @38 Generating XML output for namespace @4 Generating XML output for namespace @44 Generating XML output for namespace @63 Generating XML output for namespace @67 Generating XML output for namespace @69 Generating XML output for namespace @71 Generating XML output for namespace @74 Generating XML output for namespace @78 Generating XML output for namespace @80 Generating XML output for namespace @84 Generating XML output for namespace basix Generating XML output for namespace biharmonic Generating XML output for namespace dolfinx Generating XML output for namespace dolfinx::common Generating XML output for namespace dolfinx::fem Generating XML output for namespace dolfinx::fem::impl Generating XML output for namespace dolfinx::fem::petsc Generating XML output for namespace dolfinx::fem::sparsitybuild Generating XML output for namespace dolfinx::geometry Generating XML output for namespace dolfinx::geometry::impl Generating XML output for namespace dolfinx::geometry::impl_bb Generating XML output for namespace dolfinx::geometry::impl_gjk Generating XML output for namespace dolfinx::graph Generating XML output for namespace dolfinx::graph::build Generating XML output for namespace dolfinx::graph::kahip Generating XML output for namespace dolfinx::graph::parmetis Generating XML output for namespace dolfinx::graph::scotch Generating XML output for namespace dolfinx::io Generating XML output for namespace dolfinx::io::adios2_writer Generating XML output for namespace dolfinx::io::cells Generating XML output for namespace dolfinx::io::hdf5 Generating XML output for namespace dolfinx::io::impl Generating XML output for namespace dolfinx::io::impl_adios2 Generating XML output for namespace dolfinx::io::impl_fides Generating XML output for namespace dolfinx::io::impl_vtx Generating XML output for namespace dolfinx::io::xdmf_function Generating XML output for namespace dolfinx::io::xdmf_mesh Generating XML output for namespace dolfinx::io::xdmf_utils Generating XML output for namespace dolfinx::la Generating XML output for namespace dolfinx::la::impl Generating XML output for namespace dolfinx::la::petsc Generating XML output for namespace dolfinx::la::petsc::options Generating XML output for namespace dolfinx::math Generating XML output for namespace dolfinx::mesh Generating XML output for namespace dolfinx::mesh::impl Generating XML output for namespace dolfinx::MPI Generating XML output for namespace dolfinx::nls Generating XML output for namespace dolfinx::nls::petsc Generating XML output for namespace dolfinx::refinement Generating XML output for namespace dolfinx::refinement::impl Generating XML output for namespace dolfinx::refinement::interval Generating XML output for namespace dolfinx::refinement::plaza Generating XML output for namespace dolfinx::refinement::plaza::impl Generating XML output for namespace hyperelasticity Generating XML output for namespace linalg Generating XML output for namespace mixed_codim0 Generating XML output for namespace poisson Generating XML output for namespace pugi Generating XML output for namespace std Generating XML output for file biharmonic.py Generating XML output for file mixed_codim0.py Generating XML output for file main.cpp Generating XML output for file main.cpp Generating XML output for file main.cpp Generating XML output for file main.cpp Generating XML output for file main.cpp Generating XML output for file main.cpp Generating XML output for file main.cpp Generating XML output for file main.cpp Generating XML output for file hyperelasticity.py Generating XML output for file poisson.py Generating XML output for file poisson.py Generating XML output for file README.md Generating XML output for file defines.cpp Generating XML output for file defines.h Generating XML output for file dolfinx_common.h Generating XML output for file dolfinx_doc.h Generating XML output for file IndexMap.cpp Generating XML output for file IndexMap.h Generating XML output for file log.cpp Generating XML output for file log.h Generating XML output for file math.h Generating XML output for file MPI.cpp Generating XML output for file MPI.h Generating XML output for file Scatterer.h Generating XML output for file sort.h Generating XML output for file Table.cpp Generating XML output for file Table.h Generating XML output for file TimeLogger.cpp Generating XML output for file TimeLogger.h Generating XML output for file TimeLogManager.cpp Generating XML output for file TimeLogManager.h Generating XML output for file Timer.cpp Generating XML output for file Timer.h Generating XML output for file timing.cpp Generating XML output for file timing.h Generating XML output for file types.h Generating XML output for file dolfinx.h Generating XML output for file assemble_matrix_impl.h Generating XML output for file assemble_scalar_impl.h Generating XML output for file assemble_vector_impl.h Generating XML output for file assembler.h Generating XML output for file Constant.h Generating XML output for file CoordinateElement.cpp Generating XML output for file CoordinateElement.h Generating XML output for file DirichletBC.cpp Generating XML output for file DirichletBC.h Generating XML output for file discreteoperators.h Generating XML output for file DofMap.cpp Generating XML output for file DofMap.h Generating XML output for file dofmapbuilder.cpp Generating XML output for file dofmapbuilder.h Generating XML output for file dolfinx_fem.h Generating XML output for file ElementDofLayout.cpp Generating XML output for file ElementDofLayout.h Generating XML output for file Expression.h Generating XML output for file FiniteElement.cpp Generating XML output for file FiniteElement.h Generating XML output for file Form.h Generating XML output for file Function.h Generating XML output for file FunctionSpace.h Generating XML output for file interpolate.h Generating XML output for file sparsitybuild.cpp Generating XML output for file sparsitybuild.h Generating XML output for file traits.h Generating XML output for file BoundingBoxTree.h Generating XML output for file dolfinx_geometry.h Generating XML output for file gjk.h Generating XML output for file utils.h Generating XML output for file utils.h Generating XML output for file utils.h Generating XML output for file utils.h Generating XML output for file utils.h Generating XML output for file utils.h Generating XML output for file AdjacencyList.h Generating XML output for file dolfinx_graph.h Generating XML output for file ordering.cpp Generating XML output for file ordering.h Generating XML output for file partition.cpp Generating XML output for file partition.h Generating XML output for file partitioners.cpp Generating XML output for file partitioners.h Generating XML output for file ADIOS2Writers.cpp Generating XML output for file ADIOS2Writers.h Generating XML output for file cells.cpp Generating XML output for file cells.h Generating XML output for file dolfinx_io.h Generating XML output for file HDF5Interface.cpp Generating XML output for file HDF5Interface.h Generating XML output for file vtk_utils.cpp Generating XML output for file vtk_utils.h Generating XML output for file VTKFile.cpp Generating XML output for file VTKFile.h Generating XML output for file xdmf_function.cpp Generating XML output for file xdmf_function.h Generating XML output for file xdmf_mesh.cpp Generating XML output for file xdmf_mesh.h Generating XML output for file xdmf_utils.cpp Generating XML output for file xdmf_utils.h Generating XML output for file XDMFFile.cpp Generating XML output for file XDMFFile.h Generating XML output for file dolfinx_la.h Generating XML output for file matrix_csr_impl.h Generating XML output for file MatrixCSR.h Generating XML output for file petsc.cpp Generating XML output for file petsc.cpp Generating XML output for file petsc.h Generating XML output for file petsc.h Generating XML output for file slepc.cpp Generating XML output for file slepc.h Generating XML output for file SparsityPattern.cpp Generating XML output for file SparsityPattern.h Generating XML output for file Vector.h Generating XML output for file cell_types.cpp Generating XML output for file cell_types.h Generating XML output for file dolfinx_mesh.h Generating XML output for file generation.h Generating XML output for file Geometry.h Generating XML output for file graphbuild.cpp Generating XML output for file graphbuild.h Generating XML output for file Mesh.h Generating XML output for file MeshTags.h Generating XML output for file permutationcomputation.cpp Generating XML output for file permutationcomputation.h Generating XML output for file Topology.cpp Generating XML output for file Topology.h Generating XML output for file topologycomputation.cpp Generating XML output for file topologycomputation.h Generating XML output for file utils.cpp Generating XML output for file utils.cpp Generating XML output for file utils.cpp Generating XML output for file dolfinx_nls.h Generating XML output for file NewtonSolver.cpp Generating XML output for file NewtonSolver.h Generating XML output for file dolfinx_refinement.h Generating XML output for file interval.h Generating XML output for file option.h Generating XML output for file plaza.cpp Generating XML output for file plaza.h Generating XML output for file refine.h Generating XML output for page md__2build_2reproducible-path_2fenics-dolfinx-0_89_80_2cpp_2demo_2README Generating XML output for page todo Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/biharmonic/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/codim_0_assembly/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/common/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/custom_kernel/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/fem/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/geometry/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/graph/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/hyperelasticity/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation-io/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/interpolation_different_meshes/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/io/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/la/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/mesh/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/nls/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/demo/poisson_matrix_free/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.9.0/cpp/dolfinx/refinement/ Generating XML output for the main page Running plantuml with JAVA... Running dot... Generating dot graphs using 21 parallel threads... 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(cd python/doc; \ mkdir -p build/pkgconfig; \ cp /build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx_real.pc build/pkgconfig; \ sed "s|prefix=/usr|prefix=/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr|" -i build/pkgconfig/dolfinx_real.pc; \ PYTHONPATH=/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/python3.12/dist-packages \ PKG_CONFIG_PATH=`pwd`/build/pkgconfig:${PKG_CONFIG_PATH} \ LD_LIBRARY_PATH=/build/reproducible-path/fenics-dolfinx-0.9.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/:${LD_LIBRARY_PATH} \ XDG_CACHE_HOME=`pwd`/build \ RDMAV_FORK_SAFE=1 \ python3 -m sphinx -W -b html source/ .pybuild/html/) Running Sphinx v7.4.7 Matplotlib created a temporary cache directory at /tmp/matplotlib-d0jhwppc because the default path (/nonexistent/first-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. TNT degree 2 error: 0.0029421918345155706 TNT degree 2 error: 0.00017118942553986642 TNT degree 3 error: 8.385106828737083e-06 TNT degree 4 error: 3.394990183622027e-07 TNT degree 5 error: 1.2528243246291915e-08 TNT degree 6 error: 4.2426963107010777e-10 TNT degree 7 error: 1.9794047713048823e-10 TNT degree 8 error: 2.9565584931541024e-10 Q degree 1 error: 0.04076382001057708 Q degree 2 error: 0.0029182213395269004 Q degree 3 error: 0.00015944660110819758 Q degree 4 error: 7.937421445106478e-06 Q degree 5 error: 3.1034668624523215e-07 Q degree 6 error: 1.1356498987237013e-08 Q degree 7 error: 3.4161428239866125e-10 Q degree 8 error: 6.19100847885188e-11 Computed L2 interpolation error (equispaced): 0.01588506513458592 Computed L2 interpolation error (gll_warped): 0.0015137108623519335 loading translations [en]... done making output directory... done [autosummary] generating autosummary for: api.rst, contributing.rst, demos.rst, demos/demo_axis.md, demos/demo_biharmonic.md, demos/demo_cahn-hilliard.md, demos/demo_elasticity.md, demos/demo_gmsh.md, demos/demo_half_loaded_waveguide.md, demos/demo_hdg.md, ..., demos/demo_pyvista.md, demos/demo_scattering_boundary_conditions.md, demos/demo_static-condensation.md, demos/demo_stokes.md, demos/demo_tnt-elements.md, demos/demo_types.md, developer.rst, index.rst, installation.rst, styleguide_cpp.rst [autosummary] generating autosummary for: /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.common.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.cpp.common.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.cpp.fem.petsc.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.cpp.fem.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.cpp.geometry.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.cpp.graph.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.cpp.io.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.cpp.la.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.cpp.log.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.cpp.mesh.rst, ..., /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.geometry.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.graph.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.io.gmshio.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.io.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.jit.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.la.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.mesh.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.nls.petsc.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.pkgconfig.rst, /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/generated/dolfinx.plot.rst myst v4.0.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions={'dollarmath'}, disable_syntax=[], all_links_external=False, links_external_new_tab=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=3, heading_slug_func=None, html_meta={}, footnote_sort=True, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True) building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 29 source files that are out of date updating environment: [new config] 54 added, 0 changed, 0 removed reading sources... [ 2%] api reading sources... [ 4%] contributing reading sources... [ 6%] demos reading sources... [ 7%] demos/demo_axis reading sources... [ 9%] demos/demo_biharmonic reading sources... [ 11%] demos/demo_cahn-hilliard reading sources... [ 13%] demos/demo_elasticity reading sources... [ 15%] demos/demo_gmsh reading sources... [ 17%] demos/demo_half_loaded_waveguide reading sources... [ 19%] demos/demo_hdg reading sources... [ 20%] demos/demo_helmholtz reading sources... [ 22%] demos/demo_interpolation-io reading sources... [ 24%] demos/demo_lagrange_variants reading sources... [ 26%] demos/demo_mixed-poisson reading sources... [ 28%] demos/demo_navier-stokes reading sources... [ 30%] demos/demo_pml reading sources... [ 31%] demos/demo_poisson reading sources... [ 33%] demos/demo_poisson_matrix_free reading sources... [ 35%] demos/demo_pyamg reading sources... [ 37%] demos/demo_pyvista reading sources... [ 39%] demos/demo_scattering_boundary_conditions reading sources... [ 41%] demos/demo_static-condensation reading sources... [ 43%] demos/demo_stokes reading sources... [ 44%] demos/demo_tnt-elements reading sources... [ 46%] demos/demo_types reading sources... [ 48%] developer reading sources... [ 50%] generated/dolfinx.common reading sources... [ 52%] generated/dolfinx.cpp.common reading sources... [ 54%] generated/dolfinx.cpp.fem reading sources... [ 56%] generated/dolfinx.cpp.fem.petsc reading sources... [ 57%] generated/dolfinx.cpp.geometry reading sources... [ 59%] generated/dolfinx.cpp.graph reading sources... [ 61%] generated/dolfinx.cpp.io reading sources... [ 63%] generated/dolfinx.cpp.la reading sources... [ 65%] generated/dolfinx.cpp.log reading sources... [ 67%] generated/dolfinx.cpp.mesh reading sources... [ 69%] generated/dolfinx.cpp.nls reading sources... [ 70%] generated/dolfinx.cpp.nls.petsc reading sources... [ 72%] generated/dolfinx.cpp.refinement reading sources... [ 74%] generated/dolfinx.fem reading sources... [ 76%] generated/dolfinx.fem.petsc reading sources... [ 78%] generated/dolfinx.geometry reading sources... [ 80%] generated/dolfinx.graph reading sources... [ 81%] generated/dolfinx.io reading sources... [ 83%] generated/dolfinx.io.gmshio reading sources... [ 85%] generated/dolfinx.jit reading sources... [ 87%] generated/dolfinx.la reading sources... [ 89%] generated/dolfinx.mesh reading sources... [ 91%] generated/dolfinx.nls.petsc reading sources... [ 93%] generated/dolfinx.pkgconfig reading sources... [ 94%] generated/dolfinx.plot reading sources... [ 96%] index reading sources... [ 98%] installation reading sources... [100%] styleguide_cpp looking for now-outdated files... none found pickling environment... done checking consistency... /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_axis.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_axis /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_biharmonic.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_biharmonic /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_cahn-hilliard.md: document is referenced in multiple toctrees: ['demos', 'demos', 'demos'], selecting: demos <- demos/demo_cahn-hilliard /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_elasticity.md: document is referenced in multiple toctrees: ['demos', 'demos', 'demos'], selecting: demos <- demos/demo_elasticity /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_gmsh.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_gmsh /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_half_loaded_waveguide.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_half_loaded_waveguide /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_hdg.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_hdg /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_helmholtz.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_helmholtz /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_interpolation-io.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_interpolation-io /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_lagrange_variants.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_lagrange_variants /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_mixed-poisson.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_mixed-poisson /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_navier-stokes.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_navier-stokes /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_pml.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_pml /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_poisson.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_poisson /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_pyamg.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_pyamg /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_pyvista.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_pyvista /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_scattering_boundary_conditions.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_scattering_boundary_conditions /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_static-condensation.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_static-condensation /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_stokes.md: document is referenced in multiple toctrees: ['demos', 'demos', 'demos'], selecting: demos <- demos/demo_stokes /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_tnt-elements.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_tnt-elements /build/reproducible-path/fenics-dolfinx-0.9.0/python/doc/source/demos/demo_types.md: document is referenced in multiple toctrees: ['demos', 'demos'], selecting: demos <- demos/demo_types done preparing documents... done copying assets... copying downloadable files... [ 6%] demos/demo_biharmonic.py copying downloadable files... [ 12%] demos/demo_cahn-hilliard.py copying downloadable files... [ 18%] demos/demo_elasticity.py copying downloadable files... [ 24%] demos/demo_gmsh.py copying downloadable files... [ 29%] demos/demo_hdg.py copying downloadable files... [ 35%] demos/demo_interpolation-io.py copying downloadable files... [ 41%] demos/demo_lagrange_variants.py copying downloadable files... [ 47%] demos/demo_mixed-poisson.py copying downloadable files... [ 53%] demos/demo_mixed-poisson.ipynb copying downloadable files... [ 59%] demos/demo_navier-stokes.py copying downloadable files... [ 65%] demos/demo_poisson.py copying downloadable files... [ 71%] demos/demo_poisson_matrix_free.py copying downloadable files... [ 76%] demos/demo_poisson_matrix_free.ipynb copying downloadable files... [ 82%] demos/demo_pyamg.py copying downloadable files... [ 88%] demos/demo_stokes.py copying downloadable files... [ 94%] demos/demo_tnt-elements.py copying downloadable files... [100%] demos/demo_types.py copying static files... done copying extra files... done copying assets: done writing output... [ 2%] api writing output... [ 4%] contributing writing output... [ 6%] demos writing output... [ 7%] demos/demo_axis writing output... [ 9%] demos/demo_biharmonic writing output... [ 11%] demos/demo_cahn-hilliard writing output... [ 13%] demos/demo_elasticity writing output... [ 15%] demos/demo_gmsh writing output... [ 17%] demos/demo_half_loaded_waveguide writing output... [ 19%] demos/demo_hdg writing output... [ 20%] demos/demo_helmholtz writing output... [ 22%] demos/demo_interpolation-io writing output... [ 24%] demos/demo_lagrange_variants writing output... [ 26%] demos/demo_mixed-poisson writing output... [ 28%] demos/demo_navier-stokes writing output... [ 30%] demos/demo_pml writing output... [ 31%] demos/demo_poisson writing output... [ 33%] demos/demo_poisson_matrix_free writing output... [ 35%] demos/demo_pyamg writing output... [ 37%] demos/demo_pyvista writing output... [ 39%] demos/demo_scattering_boundary_conditions writing output... [ 41%] demos/demo_static-condensation writing output... [ 43%] demos/demo_stokes writing output... [ 44%] demos/demo_tnt-elements writing output... [ 46%] demos/demo_types writing output... [ 48%] developer writing output... [ 50%] generated/dolfinx.common writing output... [ 52%] generated/dolfinx.cpp.common writing output... [ 54%] generated/dolfinx.cpp.fem writing output... [ 56%] generated/dolfinx.cpp.fem.petsc writing output... [ 57%] generated/dolfinx.cpp.geometry writing output... [ 59%] generated/dolfinx.cpp.graph writing output... [ 61%] generated/dolfinx.cpp.io writing output... [ 63%] generated/dolfinx.cpp.la writing output... [ 65%] generated/dolfinx.cpp.log writing output... [ 67%] generated/dolfinx.cpp.mesh writing output... [ 69%] generated/dolfinx.cpp.nls writing output... [ 70%] generated/dolfinx.cpp.nls.petsc writing output... [ 72%] generated/dolfinx.cpp.refinement writing output... [ 74%] generated/dolfinx.fem writing output... [ 76%] generated/dolfinx.fem.petsc writing output... [ 78%] generated/dolfinx.geometry writing output... [ 80%] generated/dolfinx.graph writing output... [ 81%] generated/dolfinx.io writing output... [ 83%] generated/dolfinx.io.gmshio writing output... [ 85%] generated/dolfinx.jit writing output... [ 87%] generated/dolfinx.la writing output... [ 89%] generated/dolfinx.mesh writing output... [ 91%] generated/dolfinx.nls.petsc writing output... [ 93%] generated/dolfinx.pkgconfig writing output... [ 94%] generated/dolfinx.plot writing output... [ 96%] index writing output... [ 98%] installation writing output... [100%] styleguide_cpp generating indices... genindex py-modindex done highlighting module code... [ 3%] dolfinx.common highlighting module code... [ 7%] dolfinx.cpp.common highlighting module code... [ 10%] dolfinx.cpp.fem highlighting module code... [ 14%] dolfinx.cpp.geometry highlighting module code... [ 17%] dolfinx.cpp.graph highlighting module code... [ 21%] dolfinx.cpp.io highlighting module code... [ 24%] dolfinx.cpp.la highlighting module code... [ 28%] dolfinx.cpp.log highlighting module code... [ 31%] dolfinx.cpp.mesh highlighting module code... [ 34%] dolfinx.cpp.nls.petsc highlighting module code... [ 38%] dolfinx.cpp.refinement highlighting module code... [ 41%] dolfinx.fem highlighting module code... [ 45%] dolfinx.fem.assemble highlighting module code... [ 48%] dolfinx.fem.bcs highlighting module code... [ 52%] dolfinx.fem.dofmap highlighting module code... [ 55%] dolfinx.fem.element highlighting module code... [ 59%] dolfinx.fem.forms highlighting module code... [ 62%] dolfinx.fem.function highlighting module code... [ 66%] dolfinx.fem.petsc highlighting module code... [ 69%] dolfinx.geometry highlighting module code... [ 72%] dolfinx.graph highlighting module code... [ 76%] dolfinx.io.gmshio highlighting module code... [ 79%] dolfinx.io.utils highlighting module code... [ 83%] dolfinx.jit highlighting module code... [ 86%] dolfinx.la highlighting module code... [ 90%] dolfinx.mesh highlighting module code... [ 93%] dolfinx.nls.petsc highlighting module code... [ 97%] dolfinx.pkgconfig highlighting module code... [100%] dolfinx.plot writing additional pages... search done copying images... [ 17%] demos/demo_lagrange_variants_equispaced_10.png copying images... [ 33%] demos/demo_lagrange_variants_gll_10.png copying images... [ 50%] demos/demo_lagrange_variants_interpolation_equispaced.png copying images... [ 67%] demos/demo_lagrange_variants_interpolation_gll_warped.png copying images... [ 83%] demos/demo_tnt-elements_degrees_vs_error.png copying images... [100%] demos/demo_tnt-elements_ndofs_vs_error.png dumping search index in English (code: en)... done dumping object inventory... done build succeeded. The HTML pages are in .pybuild/html. dh_numpy3 -i make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' debian/rules override_dh_install-arch make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_install -a sed "s/set(CMAKE_IMPORT_FILE_VERSION 1)/set(CMAKE_IMPORT_FILE_VERSION 1)\n\nif(PETSC_SCALAR_COMPLEX)\n set(LIB_NAME_EXT \"_complex\")\nelse()\n set(LIB_NAME_EXT \"_real\")\nendif()/; \ s/libdolfinx_real.so/libdolfinx\${LIB_NAME_EXT}.so/g" \ -i debian/libdolfinx-dev/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets-relwithdebinfo.cmake make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_install -O--buildsystem=cmake -Nlibdolfinx-dev -Nlibdolfinx-real-dev -Nlibdolfinx-complex-dev -Nlibdolfinx-real0.9 -Nlibdolfinx-complex0.9 -Npython3-dolfinx -Npython3-dolfinx-real -Npython3-dolfinx-complex dh_installdocs -O--buildsystem=cmake dh_installdocs: warning: Cannot auto-detect main package for dolfinx-doc. If the default is wrong, please use --doc-main-package dh_sphinxdoc -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake debian/rules override_dh_python3-arch make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_python3 -a dh_numpy3 -a mkdir -p debian/python3-dolfinx-real//usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib mv debian/python3-dolfinx-real/usr/lib/python3 debian/python3-dolfinx-real//usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib rm -rf debian/python3-dolfinx-real//usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/python3/dist-packages/dolfinx_utils mkdir -p debian/python3-dolfinx-complex//usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib mv debian/python3-dolfinx-complex/usr/lib/python3 debian/python3-dolfinx-complex//usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib rm -rf debian/python3-dolfinx-complex//usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-complex/lib/python3/dist-packages/dolfinx_utils make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_python3 -O--buildsystem=cmake -Nlibdolfinx-dev -Nlibdolfinx-real-dev -Nlibdolfinx-complex-dev -Nlibdolfinx-real0.9 -Nlibdolfinx-complex0.9 -Npython3-dolfinx -Npython3-dolfinx-real -Npython3-dolfinx-complex E: dh_python3 dh_python3:198: no package to act on (python3-foo or one with ${python3:Depends} in Depends) dh_installsystemduser -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_compress -X.py -X.cpp -X.h -X.pdf -X.ufl make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake debian/rules override_dh_dwz make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_dwz -Xcpp.cpython make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' debian/rules override_dh_strip make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_strip --package=libdolfinx-real0.9 -Xcomplex -Xpython dh_strip --package=libdolfinx-complex0.9 -Xreal -Xpython dh_strip --package=python3-dolfinx-real make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_makeshlibs -a -O--buildsystem=cmake debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_shlibdeps --dpkg-shlibdeps-params=--ignore-missing-info make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_installdeb -O--buildsystem=cmake debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.9.0' echo "python3-petsc4py-real:Depends=python3-petsc4py, python3-slepc4py, python3-petsc4py-real (>= 3.22), python3-petsc4py-real (<< 3.23), python3-slepc4py-real (>= 3.22), python3-slepc4py-real (<< 3.23)" >> debian/python3-dolfinx-real.substvars echo "python3-petsc4py-complex:Depends=python3-petsc4py, python3-slepc4py, python3-petsc4py-complex (>= 3.22), python3-petsc4py-complex (<< 3.23), python3-slepc4py-complex (>= 3.22), python3-slepc4py-complex (<< 3.23)" >> debian/python3-dolfinx-complex.substvars echo "python-petsc4py-alt:Depends=python3-petsc4py, python3-slepc4py, python3-petsc4py-real (>= 3.22), python3-petsc4py-real (<< 3.23), python3-slepc4py-real (>= 3.22), python3-slepc4py-real (<< 3.23)" >> debian/libdolfinx-dev.substvars dh_gencontrol -- -Vpetsc:Depends="libpetsc-real3.22-dev, libslepc-real3.22-dev" -Vpetsc-complex:Depends="libpetsc-complex3.22-dev, libslepc-complex3.22-dev" -Vdolfinx:Next-Upstream-Version=1:0.10~ \ -Vnanobind:Upstream-Version=2.2 -Vnanobind:Next-Upstream-Version=3 dpkg-gencontrol: warning: package libdolfinx-real-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-dev: substitution variable ${python-petsc4py-alt:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-complex0.9: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-complex-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-real0.9: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package dolfinx-doc: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package dolfinx-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-real0.9: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-complex0.9: substitution variable ${python3:Depends} unused, but is defined make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.9.0' dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'libdolfinx-dev' in '../libdolfinx-dev_0.9.0-5_amd64.deb'. dpkg-deb: building package 'libdolfinx-complex0.9' in '../libdolfinx-complex0.9_0.9.0-5_amd64.deb'. dpkg-deb: building package 'libdolfinx-complex0.9-dbgsym' in '../libdolfinx-complex0.9-dbgsym_0.9.0-5_amd64.deb'. dpkg-deb: building package 'libdolfinx-complex-dev' in '../libdolfinx-complex-dev_0.9.0-5_amd64.deb'. dpkg-deb: building package 'libdolfinx-real0.9-dbgsym' in '../libdolfinx-real0.9-dbgsym_0.9.0-5_amd64.deb'. dpkg-deb: building package 'python3-dolfinx-complex' in '../python3-dolfinx-complex_0.9.0-5_amd64.deb'. dpkg-deb: building package 'libdolfinx-real-dev' in '../libdolfinx-real-dev_0.9.0-5_amd64.deb'. dpkg-deb: building package 'libdolfinx-real0.9' in '../libdolfinx-real0.9_0.9.0-5_amd64.deb'. dpkg-deb: building package 'dolfinx-doc' in '../dolfinx-doc_0.9.0-5_all.deb'. dpkg-deb: building package 'python3-dolfinx' in '../python3-dolfinx_0.9.0-5_amd64.deb'. dpkg-deb: building package 'python3-dolfinx-real' in '../python3-dolfinx-real_0.9.0-5_amd64.deb'. dpkg-genbuildinfo --build=binary -O../fenics-dolfinx_0.9.0-5_amd64.buildinfo dpkg-genchanges --build=binary -O../fenics-dolfinx_0.9.0-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/647716 and its subdirectories I: Current time: Wed Dec 4 02:50:46 -12 2024 I: pbuilder-time-stamp: 1733323846 Wed Dec 4 14:50:49 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_19-38439.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.XJiscdJa/fenics-dolfinx_0.9.0-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.XJiscdJa/fenics-dolfinx_0.9.0-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.XJiscdJa/fenics-dolfinx_0.9.0-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.XJiscdJa/b1/fenics-dolfinx_0.9.0-5_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.XJiscdJa/b2/fenics-dolfinx_0.9.0-5_amd64.changes ## close_archive (total time: 0.000s) 0.000s 4 calls diffoscope.comparators.gzip.GzipContainer 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 2.928s) 1.007s 2 calls convert 0.846s 2 calls compare 0.445s 9 calls diff 0.191s 6 calls xz 0.157s 20 calls sng 0.138s 4 calls identify 0.066s 9 calls cmp 0.066s 9 calls cmp (external) 0.009s 4 calls gzip 0.003s 42 calls cmp (internal) ## compare_files (cumulative) (total time: 21.848s) 4.774s 1 call abc.DotChangesFile 4.610s 1 call abc.DebFile 4.584s 2 calls abc.XzFile 4.313s 1 call abc.DebDataTarFile 2.737s 2 calls abc.PngFile 0.379s 2 calls abc.GzipFile 0.365s 2 calls abc.JSONFile 0.056s 1 call abc.TarFile 0.031s 1 call abc.Md5sumsFile ## container_extract (total time: 0.554s) 0.345s 1770 calls diffoscope.comparators.deb.DebTarContainer 0.192s 6 calls diffoscope.comparators.xz.XzContainer 0.009s 4 calls diffoscope.comparators.gzip.GzipContainer 0.006s 8 calls diffoscope.comparators.deb.DebContainer 0.003s 6 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 1.856s) 1.856s 143 calls linediff ## has_same_content_as (total time: 0.075s) 0.055s 11 calls abc.DebFile 0.014s 1 call abc.DebDataTarFile 0.003s 23 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.002s 1 call abc.TarFile 0.000s 2 calls abc.Md5sumsFile 0.000s 2 calls abc.JSONFile 0.000s 2 calls abc.TextFile 0.000s 1 call abc.DotChangesFile 0.000s 2 calls abc.XzFile 0.000s 2 calls abc.GzipFile 0.000s 2 calls abc.PngFile ## main (total time: 19.085s) 19.083s 2 calls outputs 0.003s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 4 calls diffoscope.comparators.gzip.GzipContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer ## output (total time: 13.681s) 13.611s 1 call html 0.038s 1 call text 0.032s 1 call json ## recognizes (total time: 0.492s) 0.319s 12 calls diffoscope.comparators.binary.FilesystemFile 0.092s 594 calls diffoscope.comparators.debian.DebControlMember 0.051s 882 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.030s 332 calls diffoscope.comparators.utils.archive.ArchiveMember ## specialize (total time: 0.160s) 0.160s 49 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 19.383s CPU time consumed: 19.724s Wed Dec 4 14:51:09 UTC 2024 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Wed Dec 4 14:51:09 UTC 2024 E: fenics-dolfinx failed to build reproducibly in unstable on amd64. Wed Dec 4 14:51:10 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Dec 4 14:51:10 UTC 2024 I: Submitting 28K b1/fenics-dolfinx_0.9.0-5_amd64.buildinfo.asc Wed Dec 4 14:51:11 UTC 2024 I: Submitting 28K b2/fenics-dolfinx_0.9.0-5_amd64.buildinfo.asc Wed Dec 4 14:51:12 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Dec 4 14:51:12 UTC 2024 I: Done submitting .buildinfo files. Wed Dec 4 14:51:12 UTC 2024 I: Removing signed fenics-dolfinx_0.9.0-5_amd64.buildinfo.asc files: removed './b1/fenics-dolfinx_0.9.0-5_amd64.buildinfo.asc' removed './b2/fenics-dolfinx_0.9.0-5_amd64.buildinfo.asc'