Mon Aug 19 14:49:46 UTC 2024 I: starting to build fastdnaml/unstable/amd64 on jenkins on '2024-08-19 14:49' Mon Aug 19 14:49:46 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_2/16583/console.log Mon Aug 19 14:49:46 UTC 2024 I: Downloading source for unstable/fastdnaml=1.2.2-17 --2024-08-19 14:49:46-- http://deb.debian.org/debian/pool/main/f/fastdnaml/fastdnaml_1.2.2-17.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2197 (2.1K) [text/prs.lines.tag] Saving to: ‘fastdnaml_1.2.2-17.dsc’ 0K .. 100% 315M=0s 2024-08-19 14:49:46 (315 MB/s) - ‘fastdnaml_1.2.2-17.dsc’ saved [2197/2197] Mon Aug 19 14:49:46 UTC 2024 I: fastdnaml_1.2.2-17.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: fastdnaml Binary: fastdnaml Architecture: any Version: 1.2.2-17 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Charles Plessy , Étienne Mollier Homepage: ftp://ftp.bio.indiana.edu/molbio/evolve/fastdnaml/fastDNAml.html Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/fastdnaml Vcs-Git: https://salsa.debian.org/med-team/fastdnaml.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: fastdnaml deb science optional arch=any Checksums-Sha1: 78197cbd760163f65085ac80c36d4286a1f29e34 70005 fastdnaml_1.2.2.orig.tar.gz 054179337daeb14b09b2bfcf408976332e2044f6 8896 fastdnaml_1.2.2-17.debian.tar.xz Checksums-Sha256: 34690ec9a8e2fe1d86bea4a7cb10f7bc47e5e4c30719e1c9451210df4f160180 70005 fastdnaml_1.2.2.orig.tar.gz 1993ee8517706010c23bffcd24068d25d411e0d1576397443f08ccc147e8595f 8896 fastdnaml_1.2.2-17.debian.tar.xz Files: dd9c737e0f433879500391d0e229f763 70005 fastdnaml_1.2.2.orig.tar.gz 14613854f87cb24648de917dc8de5ec9 8896 fastdnaml_1.2.2-17.debian.tar.xz Dgit: ee25a3fb0a699b35904091838e380c376b1fc967 debian archive/debian/1.2.2-17 https://git.dgit.debian.org/fastdnaml -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmacDYYUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdob1Q/9FPa4tviCnDM+Pf4Bo8t+KnRw+LTq u0NFlt+mHbUwydJqWyAhTcERMS8KrmA0Ubl9RoRPnqrQQd4gaur+/GdrRYwE5i9c IMBBhv8JzAWjVV6Ajufj9inb6CNPwKSWRZDJ8Hg6YSUGolQPME4mEdperKLY2+b/ XUYHRpzkeOXzOAHtKg4fxsuawhEawWWqY/tPXDNT/GBt4QZ7LPfjo1bq5CSv+P+x yn/9hOMfZ6yufk6vJloPFzWEiQBltG3WnBDqQVdpxXSg+R3lektkBGF9t5aUwPhf fdKPXhNYtiryzktmLPAwZ+7chliDjXzOuLhvNGA1swP01+1yLjIhKyOLEqlmVgRq zseFRIYqgyj+0JeeVPSdWOn3bZ9vUYBTXktPW/XjCp3i2+qD9Er2snwJOj+Tsoui VKL8ovlKA/wsOgou7tvcLj0YOvuqgyAaShiUFWoajLIcqMOBUC7xy8ZJNPVEt0WH InwYFcqL6s1rDoEgyY5cJq/T9XTexaC1HTSuy0n5PRAlksU8+ByAi8PByaEwVO7d QR/43VD2PC/TrMNpt+cHQwFiT89Y9CsncbmNrF+CgoLrnQ+Oqhs85rCt+QEOYXIh 7y2JuzGWixcfdPzQARA/R299P7g/NTe/o6sUXE2LtICATrDFRosMmdjzhoU127yv sTvCub4MDEEEBHI= =52hA -----END PGP SIGNATURE----- Mon Aug 19 14:49:46 UTC 2024 I: Checking whether the package is not for us Mon Aug 19 14:49:46 UTC 2024 I: Starting 1st build on remote node ionos5-amd64.debian.net. Mon Aug 19 14:49:46 UTC 2024 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Mon Aug 19 14:51:25 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 21 09:12:48 -12 2025 I: pbuilder-time-stamp: 1758489168 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fastdnaml_1.2.2-17.dsc] I: copying [./fastdnaml_1.2.2.orig.tar.gz] I: copying [./fastdnaml_1.2.2-17.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Jul 20 19:18:30 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fastdnaml_1.2.2-17.dsc: no acceptable signature found dpkg-source: info: extracting fastdnaml in fastdnaml-1.2.2 dpkg-source: info: unpacking fastdnaml_1.2.2.orig.tar.gz dpkg-source: info: unpacking fastdnaml_1.2.2-17.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile.patch dpkg-source: info: applying scripts.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying fixup-implicit-function-declaration.patch dpkg-source: info: applying gcc-14.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3120105/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='b8d1e2cd954d40f8a47b27acf2e66ec7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3120105' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QQv7Rxqw/pbuilderrc_yj1i --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QQv7Rxqw/b1 --logfile b1/build.log fastdnaml_1.2.2-17.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.9.7+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1~bpo12+1 (2024-07-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3120105/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19723 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.8 MB of archives. After unpacking 75.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-7 [96.8 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-3 [1414 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.19 [89.7 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.19 [916 kB] Fetched 19.8 MB in 3s (6706 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19723 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-7_amd64.deb ... Unpacking bsdextrautils (2.40.2-7) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-3_amd64.deb ... Unpacking man-db (2.12.1-3) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.19_all.deb ... Unpacking libdebhelper-perl (13.19) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.191-2_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../23-libicu72_72.1-5_amd64.deb ... Unpacking libicu72:amd64 (72.1-5) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg-3+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg-3+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.19_all.deb ... Unpacking debhelper (13.19) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-5) ... Setting up bsdextrautils (2.40.2-7) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.19) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-3) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.19) ... Processing triggers for libc-bin (2.39-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/fastdnaml-1.2.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fastdnaml_1.2.2-17_source.changes dpkg-buildpackage: info: source package fastdnaml dpkg-buildpackage: info: source version 1.2.2-17 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j42 clean make[1]: Entering directory '/build/reproducible-path/fastdnaml-1.2.2' (cd source; rm -f *.o fastDNAml) rm -rf tests rm -f checkpoint.* make[1]: Leaving directory '/build/reproducible-path/fastdnaml-1.2.2' debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/fastdnaml-1.2.2' dh_clean rm -fr source/fastDNAml make[1]: Leaving directory '/build/reproducible-path/fastdnaml-1.2.2' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j42 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/fastdnaml-1.2.2' cd source && cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fastdnaml-1.2.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection fastDNAml.c -o fastDNAml -lm -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/reproducible-path/fastdnaml-1.2.2' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/fastdnaml-1.2.2' # do nothing make[1]: Leaving directory '/build/reproducible-path/fastdnaml-1.2.2' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/fastdnaml-1.2.2' dh_install cp -a docs/fastDNAml_doc_1.2.txt `pwd`/debian/`dh_listpackages`/usr/share/`dh_listpackages`/fastdnaml_help # the scripts have to be executable thus mentioning these in debian/install is not enough cp -a scripts/* `pwd`/debian/`dh_listpackages`/usr/lib/`dh_listpackages`/bin chmod 755 `pwd`/debian/`dh_listpackages`/usr/lib/`dh_listpackages`/bin/* make[1]: Leaving directory '/build/reproducible-path/fastdnaml-1.2.2' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_installmenu dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'fastdnaml' in '../fastdnaml_1.2.2-17_amd64.deb'. dpkg-deb: building package 'fastdnaml-dbgsym' in '../fastdnaml-dbgsym_1.2.2-17_amd64.deb'. dpkg-genbuildinfo --build=binary -O../fastdnaml_1.2.2-17_amd64.buildinfo dpkg-genchanges --build=binary -O../fastdnaml_1.2.2-17_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3120105 and its subdirectories I: Current time: Sun Sep 21 09:14:23 -12 2025 I: pbuilder-time-stamp: 1758489263 Mon Aug 19 14:51:25 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Mon Aug 19 14:51:25 UTC 2024 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Mon Aug 19 14:52:07 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Mon Aug 19 14:52:07 UTC 2024 I: fastdnaml_1.2.2-17_amd64.changes: Format: 1.8 Date: Sat, 20 Jul 2024 21:08:42 +0200 Source: fastdnaml Binary: fastdnaml fastdnaml-dbgsym Architecture: amd64 Version: 1.2.2-17 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: fastdnaml - Tool for construction of phylogenetic trees of DNA sequences Closes: 1074947 Changes: fastdnaml (1.2.2-17) unstable; urgency=medium . * gcc-14.patch: new: fix implicit return type for "main". (Closes: #1074947) * d/control: declare compliance to standards version 4.7.0. * d/control: add myself to uploaders. Checksums-Sha1: 6afffb415e30a7aed91850c6721f1e2042af09ca 71328 fastdnaml-dbgsym_1.2.2-17_amd64.deb 201873832032e75c73b240a91e62b4386ce68338 4871 fastdnaml_1.2.2-17_amd64.buildinfo eec76b33f57689af5730542b03a1ddbd0603e82f 60004 fastdnaml_1.2.2-17_amd64.deb Checksums-Sha256: 5aa2a9bd4f060f755dc74e67fc2b8c0c2e5779b7648f9f12d3d617f363d0f7ff 71328 fastdnaml-dbgsym_1.2.2-17_amd64.deb 95bf8e0d880af33818040920d56765e046b36b23a8a98da281706495cdc2886f 4871 fastdnaml_1.2.2-17_amd64.buildinfo 8285735b9d89adb83dd23d13175a22d762b281e555b511ab7233af4eced5ab2d 60004 fastdnaml_1.2.2-17_amd64.deb Files: 3249bb6cc832525960ad1673a953f73d 71328 debug optional fastdnaml-dbgsym_1.2.2-17_amd64.deb cb1258eedb1806ace52eb662369f2d74 4871 science optional fastdnaml_1.2.2-17_amd64.buildinfo 507bffae6f5b710f22057e9712354fa1 60004 science optional fastdnaml_1.2.2-17_amd64.deb Mon Aug 19 14:52:08 UTC 2024 I: diffoscope 274 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_2-16583.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.QQv7Rxqw/fastdnaml_1.2.2-17.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.QQv7Rxqw/fastdnaml_1.2.2-17.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.QQv7Rxqw/fastdnaml_1.2.2-17.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.QQv7Rxqw/b1/fastdnaml_1.2.2-17_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.QQv7Rxqw/b2/fastdnaml_1.2.2-17_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.398s) 0.398s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.017s) 0.017s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 745ms CPU time consumed: 746ms Mon Aug 19 14:52:10 UTC 2024 I: diffoscope 274 found no differences in the changes files, and a .buildinfo file also exists. Mon Aug 19 14:52:10 UTC 2024 I: fastdnaml from unstable built successfully and reproducibly on amd64. Mon Aug 19 14:52:11 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Aug 19 14:52:11 UTC 2024 I: Submitting 8.0K b1/fastdnaml_1.2.2-17_amd64.buildinfo.asc Mon Aug 19 14:52:12 UTC 2024 I: Submitting 8.0K b2/fastdnaml_1.2.2-17_amd64.buildinfo.asc Mon Aug 19 14:52:13 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Aug 19 14:52:13 UTC 2024 I: Done submitting .buildinfo files. Mon Aug 19 14:52:13 UTC 2024 I: Removing signed fastdnaml_1.2.2-17_amd64.buildinfo.asc files: removed './b1/fastdnaml_1.2.2-17_amd64.buildinfo.asc' removed './b2/fastdnaml_1.2.2-17_amd64.buildinfo.asc'