Mon Dec 30 08:19:27 UTC 2024 I: starting to build fastaq/unstable/amd64 on jenkins on '2024-12-30 08:19' Mon Dec 30 08:19:27 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_19/41442/console.log Mon Dec 30 08:19:27 UTC 2024 I: Downloading source for unstable/fastaq=3.17.0-9 --2024-12-30 08:19:27-- http://deb.debian.org/debian/pool/main/f/fastaq/fastaq_3.17.0-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2147 (2.1K) [text/prs.lines.tag] Saving to: ‘fastaq_3.17.0-9.dsc’ 0K .. 100% 353M=0s 2024-12-30 08:19:27 (353 MB/s) - ‘fastaq_3.17.0-9.dsc’ saved [2147/2147] Mon Dec 30 08:19:27 UTC 2024 I: fastaq_3.17.0-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: fastaq Binary: fastaq Architecture: all Version: 3.17.0-9 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Jorge Soares , Sascha Steinbiss Homepage: https://github.com/sanger-pathogens/Fastaq Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/fastaq Vcs-Git: https://salsa.debian.org/med-team/fastaq.git Testsuite: autopkgtest Testsuite-Triggers: python3, samtools Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, python3-pytest, samtools, help2man Package-List: fastaq deb science optional arch=all Checksums-Sha1: 7f62b54535d50f657173ac52717e048d3c6a06a3 71324 fastaq_3.17.0.orig.tar.gz 32d75c6b6f329da993822687216decfe7918bb44 5688 fastaq_3.17.0-9.debian.tar.xz Checksums-Sha256: bb63c03e4bdde92deb43469f8a93a7f440272e47adc8edb9d94cd5fa107fa746 71324 fastaq_3.17.0.orig.tar.gz c67eb57777436a35ee9c30474dc297ed6614c2558d56c063e968ba9f85da6ccd 5688 fastaq_3.17.0-9.debian.tar.xz Files: 4133971445c9c9037bc384d86cdfe4d8 71324 fastaq_3.17.0.orig.tar.gz 4171cb4b8742ba5ab4238439195d31c2 5688 fastaq_3.17.0-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmdTY1ERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFJ/g//U29kz16cEP/MKWreBG2wnKA2wI7H1TCg 7bZkyffoBnO3O0DQ4FlPsU32sDNYTyu4w4Jtz/hr7Q39vM3GIWz8eTjnHIg5oqj1 j7ZQdlqd4uh0lc162LI8yDqbQVSb+nfnwiLxh3SgMbXaSo8jxZXwoWK8FAPcHZGO fn66ZTYJrohftvOTV9SYWUx+pmNkYh2CRdVez3s9+84MlHELNgeD3ASY0MljpEUg Nn2HW6omVmvsvzbyW7EsBaEwqJaQHVKwWlhh6Mvh7K1S3YEhMwEOKiwJorXJtoOr s42B1pQykwt03PQ6qB7aTLV//i23u5uBAjk9eDo0K1tZ8bEEbJkHWUVcqCOxEhEi UrQpvibZqw6CmX6d2gVGiLbzlrb8Nel+l6GdPSAryLqctyhrTTQoEjH1L6TqVRFB v66L1yY0ykCOpQYbPadr5zA42Osoydx8l6IOdTcxBJdMFHoj72dmjuEuJITfxkIo ugtu6Zk6kddjbKYN+2F5iYLCLScw/KoBfFb6zQcvG2ceqbbLAng+Ynmwdyw1cyyh etvXXi4gd+CUywclCjJi0lgBEmDI8UdESilx3Yng3KhZ5WkFdivN4AOkP4B2oyeo rPiOvYU0/jS7xsdMr17i3AQDVjCG4HCwaHnV3IHExvv8Xi+ZVHEG5V2Qqfi70QKX C7NDXOOXK4U= =exqX -----END PGP SIGNATURE----- Mon Dec 30 08:19:27 UTC 2024 I: Checking whether the package is not for us Mon Dec 30 08:19:27 UTC 2024 I: Starting 1st build on remote node ionos1-amd64.debian.net. Mon Dec 30 08:19:27 UTC 2024 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Mon Dec 30 08:21:53 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Dec 29 20:19:29 -12 2024 I: pbuilder-time-stamp: 1735546769 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fastaq_3.17.0-9.dsc] I: copying [./fastaq_3.17.0.orig.tar.gz] I: copying [./fastaq_3.17.0-9.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./fastaq_3.17.0-9.dsc: unsupported subcommand dpkg-source: info: extracting fastaq in fastaq-3.17.0 dpkg-source: info: unpacking fastaq_3.17.0.orig.tar.gz dpkg-source: info: unpacking fastaq_3.17.0-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying tests dpkg-source: info: applying remove-pkg_resources.patch dpkg-source: info: applying python3.12-syntax.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3074112/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='e1a86853e6e74488b8827c5594f0b9ba' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3074112' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6nzk8G85/pbuilderrc_qm58 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6nzk8G85/b1 --logfile b1/build.log fastaq_3.17.0-9.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3074112/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, python3-pytest, samtools, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19859 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} samtools{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-pygments wget 0 packages upgraded, 92 newly installed, 0 to remove and 0 not upgraded. Need to get 34.3 MB of archives. After unpacking 129 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.8-3 [817 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.8-3 [2162 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.8-1 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-4 [256 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2~rc1-2 [23.8 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 14 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.8-3 [1969 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.8-3 [677 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.8-1 [9788 B] Get: 24 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.8-1 [27.9 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-3 [200 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-13 [91.9 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-3 [723 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.23 [90.6 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 46 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-3 [1600 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.23 [919 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 61 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.6.0-1 [720 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20241217 [113 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.19.0-3+b3 [49.5 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.8-2 [1454 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.19+dfsg-1 [187 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.11.1-1 [360 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libhtscodecs2 amd64 1.6.1-1 [95.6 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libhts3t64 amd64 1.20+ds-2 [455 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.5-2+b1 [105 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 89 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.4-1 [250 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 samtools amd64 1.20-3 [653 kB] Fetched 34.3 MB in 2s (16.8 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19859 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../libpython3.12-minimal_3.12.8-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.8-3) ... 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Setting up libdeflate0:amd64 (1.22-1) ... Setting up gettext-base (0.22.5-3) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:amd64 (1.47.2~rc1-2) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Dec 30 08:20:56 UTC 2024. Universal Time is now: Mon Dec 30 08:20:56 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libncurses6:amd64 (6.5-2+b1) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up autopoint (0.22.5-3) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up libffi8:amd64 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libtasn1-6:amd64 (4.19.0-3+b3) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:amd64 (1.9.1-1) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-3) ... Setting up libtool (2.4.7-8) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-7) ... Setting up libgnutls30t64:amd64 (3.8.8-2) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libldap-2.5-0:amd64 (2.5.19+dfsg-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Setting up libpython3.12-stdlib:amd64 (3.12.8-3) ... Setting up python3.12 (3.12.8-3) ... Setting up libcurl3t64-gnutls:amd64 (8.11.1-1) ... Setting up debhelper (13.23) ... Setting up libhts3t64:amd64 (1.20+ds-2) ... Setting up libpython3-stdlib:amd64 (3.12.8-1) ... Setting up python3 (3.12.8-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up samtools (1.20-3) ... Setting up python3-packaging (24.2-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-pytest (8.3.4-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up dh-python (6.20241217) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/fastaq-3.17.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fastaq_3.17.0-9_source.changes dpkg-buildpackage: info: source package fastaq dpkg-buildpackage: info: source version 3.17.0-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/fastaq-3.17.0' rm -rf build .pybuild doc pyfastaq.egg-info .pytest_cache find . -name __pycache__ | xargs rm -rf rm -rf /build/reproducible-path/fastaq-3.17.0/debian/man make[1]: Leaving directory '/build/reproducible-path/fastaq-3.17.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/fastaq.substvars debian/files rm -fr -- debian/fastaq/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.12 I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/fastaq-3.17.0' dh_python3 D: dh_python3 dh_python3:180: version: 6.20241217 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=None) D: dh_python3 dh_python3:183: supported Python versions: 3.12,3.13 (default=3.12) D: dh_python3 debhelper:174: source=fastaq, binary packages=['fastaq'] D: dh_python3 dh_python3:205: processing package fastaq... D: dh_python3 fs:338: package fastaq details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package fastaq D: dh_python3 depends:253: D=set(); R=[]; S=[]; E=[], B=[]; RT=[] dh_auto_build pybuild --build -i python{version} -p 3.12 I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq copying pyfastaq/intervals.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq copying pyfastaq/caf.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq copying pyfastaq/__init__.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq copying pyfastaq/tasks.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq copying pyfastaq/genetic_codes.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq copying pyfastaq/utils.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq copying pyfastaq/sequences.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq creating /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/add_indels.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/get_ids.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/acgtn_only.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/trim_Ns_at_end.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/merge.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/get_seq_flanking_gaps.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_random_subset.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/count_sequences.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/interleave.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/trim_ends.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/enumerate_names.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_boulderio.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_tiling_bam.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_mira_xml.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/reverse_complement.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/scaffolds_to_contigs.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/sort_by_size.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/version.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/__init__.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/caf_to_fastq.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_perfect_reads.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/strip_illumina_suffix.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/split_by_base_count.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/expand_nucleotides.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/make_random_contigs.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/capillary_to_pairs.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/search_for_seq.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_unique_by_id.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/sort_by_name.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/replace_bases.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_orfs_gff.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_fasta.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/translate.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/chunker.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/fasta_to_fastq.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/trim_contigs.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/filter.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_fake_qual.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/deinterleave.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners copying pyfastaq/runners/sequence_trim.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners running build_scripts creating build/scripts-3.12 copying and adjusting scripts/fastaq -> build/scripts-3.12 changing mode of build/scripts-3.12/fastaq from 644 to 755 mkdir /build/reproducible-path/fastaq-3.17.0/doc cd /build/reproducible-path/fastaq-3.17.0/doc make[1]: Leaving directory '/build/reproducible-path/fastaq-3.17.0' rm -f debian/fastaq.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/fastaq-3.17.0' PYBUILD_SYSTEM=custom \ PYBUILD_TEST_ARGS="cd {dir}; {interpreter} -m pytest pyfastaq/tests/" dh_auto_test pybuild --test -i python{version} -p 3.12 I: pybuild base:311: cd /build/reproducible-path/fastaq-3.17.0; python3.12 -m pytest pyfastaq/tests/ ============================= test session starts ============================== platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/fastaq-3.17.0 plugins: typeguard-4.4.1 collected 125 items pyfastaq/tests/caf_test.py . [ 0%] pyfastaq/tests/intervals_test.py ............. [ 11%] pyfastaq/tests/sequences_test.py ....................................... [ 42%] ........... [ 51%] pyfastaq/tests/tasks_test.py ........................................... [ 85%] .............. [ 96%] pyfastaq/tests/utils_test.py .... [100%] =============================== warnings summary =============================== pyfastaq/__init__.py:3 /build/reproducible-path/fastaq-3.17.0/pyfastaq/__init__.py:3: DeprecationWarning: Unimplemented abstract methods {'locate_file', 'read_text'} __version__ = Distribution().from_name('pyfastaq').version pyfastaq/__init__.py:6 /build/reproducible-path/fastaq-3.17.0/pyfastaq/__init__.py:6: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html from pkg_resources import get_distribution -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================= 125 passed, 2 warnings in 0.73s ======================== rm -fr -- /tmp/dh-xdg-rundir-iuloaM9P make[1]: Leaving directory '/build/reproducible-path/fastaq-3.17.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/fastaq.substvars rm -fr -- debian/.debhelper/generated/fastaq/ debian/fastaq/ debian/tmp/ dh_auto_install --destdir=debian/fastaq/ -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/fastaq-3.17.0/debian/fastaq pybuild --install -i python{version} -p 3.12 --dest-dir=/build/reproducible-path/fastaq-3.17.0/debian/fastaq I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/fastaq-3.17.0/debian/fastaq /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_scripts running install_lib creating /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages creating /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/intervals.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/caf.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/__init__.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/tasks.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/genetic_codes.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/utils.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/sequences.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq creating /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/add_indels.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/get_ids.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/acgtn_only.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/trim_Ns_at_end.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/merge.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/get_seq_flanking_gaps.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/to_random_subset.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/count_sequences.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/interleave.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/trim_ends.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/enumerate_names.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/to_boulderio.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/to_tiling_bam.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/to_mira_xml.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/reverse_complement.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/scaffolds_to_contigs.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/sort_by_size.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/version.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/__init__.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/caf_to_fastq.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/to_perfect_reads.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/strip_illumina_suffix.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/split_by_base_count.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/expand_nucleotides.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/make_random_contigs.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/capillary_to_pairs.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/search_for_seq.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/to_unique_by_id.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/sort_by_name.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/replace_bases.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/to_orfs_gff.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/to_fasta.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/translate.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/chunker.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/fasta_to_fastq.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/trim_contigs.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/filter.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/to_fake_qual.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/deinterleave.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.12_fastaq/build/pyfastaq/runners/sequence_trim.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/intervals.py to intervals.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/caf.py to caf.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/tasks.py to tasks.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/genetic_codes.py to genetic_codes.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/utils.py to utils.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/sequences.py to sequences.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/add_indels.py to add_indels.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/get_ids.py to get_ids.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/acgtn_only.py to acgtn_only.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/trim_Ns_at_end.py to trim_Ns_at_end.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/merge.py to merge.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/get_seq_flanking_gaps.py to get_seq_flanking_gaps.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/to_random_subset.py to to_random_subset.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/count_sequences.py to count_sequences.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/interleave.py to interleave.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/trim_ends.py to trim_ends.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/enumerate_names.py to enumerate_names.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/to_boulderio.py to to_boulderio.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/to_tiling_bam.py to to_tiling_bam.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/to_mira_xml.py to to_mira_xml.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/reverse_complement.py to reverse_complement.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/scaffolds_to_contigs.py to scaffolds_to_contigs.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/sort_by_size.py to sort_by_size.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/version.py to version.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/caf_to_fastq.py to caf_to_fastq.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/to_perfect_reads.py to to_perfect_reads.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/strip_illumina_suffix.py to strip_illumina_suffix.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/split_by_base_count.py to split_by_base_count.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/expand_nucleotides.py to expand_nucleotides.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/make_random_contigs.py to make_random_contigs.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/capillary_to_pairs.py to capillary_to_pairs.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/search_for_seq.py to search_for_seq.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/to_unique_by_id.py to to_unique_by_id.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/sort_by_name.py to sort_by_name.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/replace_bases.py to replace_bases.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/to_orfs_gff.py to to_orfs_gff.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/to_fasta.py to to_fasta.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/translate.py to translate.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/chunker.py to chunker.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/fasta_to_fastq.py to fasta_to_fastq.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/trim_contigs.py to trim_contigs.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/filter.py to filter.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/to_fake_qual.py to to_fake_qual.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/deinterleave.py to deinterleave.cpython-312.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq/runners/sequence_trim.py to sequence_trim.cpython-312.pyc running install_egg_info running egg_info creating pyfastaq.egg-info writing pyfastaq.egg-info/PKG-INFO writing dependency_links to pyfastaq.egg-info/dependency_links.txt writing top-level names to pyfastaq.egg-info/top_level.txt writing manifest file 'pyfastaq.egg-info/SOURCES.txt' reading manifest file 'pyfastaq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'pyfastaq.egg-info/SOURCES.txt' Copying pyfastaq.egg-info to /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.12/dist-packages/pyfastaq-3.17.0.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/bin copying build/scripts-3.12/fastaq -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/bin changing mode of /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/bin/fastaq to 755 dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/fastaq/usr/share/doc/fastaq install -p -m0644 debian/copyright debian/fastaq/usr/share/doc/fastaq/copyright dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/fastaq/usr/share/doc/fastaq install -p -m0644 debian/.debhelper/generated/fastaq/dh_installchangelogs.dch.trimmed debian/fastaq/usr/share/doc/fastaq/changelog.Debian rm -f debian/fastaq.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/fastaq-3.17.0' mkdir -p /build/reproducible-path/fastaq-3.17.0/debian/man PYTHONPATH=. help2man -N -o debian/man/fastaq.1 \ -n 'FASTA and FASTQ file manipulation tools' \ --no-discard-stderr \ --version-string=`PYTHONPATH=. scripts/fastaq version` scripts/fastaq sed -i 's/.SH DESCRIPTION/.SH DESCRIPTION\\n.nf/' debian/man/fastaq.1 scripts/fastaq 2>&1 | tail -n +13 | debian/make_man dh_installman -- install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-fasta_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-filter.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-get_ids.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-search_for_seq.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-split_by_base_count.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_orfs_gff.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-trim_Ns_at_end.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq.1 debian/fastaq/usr/share/man/man1/fastaq.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 mv debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 mv debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 mv debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 mv debian/fastaq/usr/share/man/man1/fastaq-interleave.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-interleave.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 mv debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 mv debian/fastaq/usr/share/man/man1/fastaq-add_indels.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 mv debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 mv debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 mv debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 mv debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 mv debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 mv debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 mv debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 mv debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 mv debian/fastaq/usr/share/man/man1/fastaq-merge.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-merge.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1 mv debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 mv debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 mv debian/fastaq/usr/share/man/man1/fastaq-chunker.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-chunker.1 mv debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 mv debian/fastaq/usr/share/man/man1/fastaq-filter.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-filter.1 mv debian/fastaq/usr/share/man/man1/fastaq-get_ids.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 mv debian/fastaq/usr/share/man/man1/fastaq-translate.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-translate.1 mv debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 mv debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 mv debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 mv debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 mv debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 mv debian/fastaq/usr/share/man/man1/fastaq-version.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-version.1 mv debian/fastaq/usr/share/man/man1/fastaq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 mv debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 mv debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 make[1]: Leaving directory '/build/reproducible-path/fastaq-3.17.0' dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20241217 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:183: supported Python versions: 3.12,3.13 (default=3.12) D: dh_python3 debhelper:174: source=fastaq, binary packages=['fastaq'] D: dh_python3 dh_python3:205: processing package fastaq... D: dh_python3 fs:50: moving files from debian/fastaq/usr/lib/python3.12/dist-packages to debian/fastaq/usr/lib/python3/dist-packages/ D: dh_python3 fs:338: package fastaq details = {'requires.txt': set(), 'egg-info': {'debian/fastaq/usr/lib/python3/dist-packages/pyfastaq-3.17.0.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package fastaq D: dh_python3 depends:253: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild cd debian/fastaq chmod a-x usr/share/doc/fastaq/changelog.Debian usr/share/man/man1/fastaq-acgtn_only.1 usr/share/man/man1/fastaq-add_indels.1 usr/share/man/man1/fastaq-caf_to_fastq.1 usr/share/man/man1/fastaq-capillary_to_pairs.1 usr/share/man/man1/fastaq-chunker.1 usr/share/man/man1/fastaq-count_sequences.1 usr/share/man/man1/fastaq-deinterleave.1 usr/share/man/man1/fastaq-enumerate_names.1 usr/share/man/man1/fastaq-expand_nucleotides.1 usr/share/man/man1/fastaq-fasta_to_fastq.1 usr/share/man/man1/fastaq-filter.1 usr/share/man/man1/fastaq-get_ids.1 usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 usr/share/man/man1/fastaq-interleave.1 usr/share/man/man1/fastaq-make_random_contigs.1 usr/share/man/man1/fastaq-merge.1 usr/share/man/man1/fastaq-replace_bases.1 usr/share/man/man1/fastaq-reverse_complement.1 usr/share/man/man1/fastaq-scaffolds_to_contigs.1 usr/share/man/man1/fastaq-search_for_seq.1 usr/share/man/man1/fastaq-sequence_trim.1 usr/share/man/man1/fastaq-sort_by_name.1 usr/share/man/man1/fastaq-sort_by_size.1 usr/share/man/man1/fastaq-split_by_base_count.1 usr/share/man/man1/fastaq-strip_illumina_suffix.1 usr/share/man/man1/fastaq-to_boulderio.1 usr/share/man/man1/fastaq-to_fake_qual.1 usr/share/man/man1/fastaq-to_fasta.1 usr/share/man/man1/fastaq-to_mira_xml.1 usr/share/man/man1/fastaq-to_orfs_gff.1 usr/share/man/man1/fastaq-to_perfect_reads.1 usr/share/man/man1/fastaq-to_random_subset.1 usr/share/man/man1/fastaq-to_tiling_bam.1 usr/share/man/man1/fastaq-to_unique_by_id.1 usr/share/man/man1/fastaq-translate.1 usr/share/man/man1/fastaq-trim_Ns_at_end.1 usr/share/man/man1/fastaq-trim_contigs.1 usr/share/man/man1/fastaq-trim_ends.1 usr/share/man/man1/fastaq-version.1 usr/share/man/man1/fastaq.1 gzip -9nf usr/share/doc/fastaq/changelog.Debian usr/share/man/man1/fastaq-acgtn_only.1 usr/share/man/man1/fastaq-add_indels.1 usr/share/man/man1/fastaq-caf_to_fastq.1 usr/share/man/man1/fastaq-capillary_to_pairs.1 usr/share/man/man1/fastaq-chunker.1 usr/share/man/man1/fastaq-count_sequences.1 usr/share/man/man1/fastaq-deinterleave.1 usr/share/man/man1/fastaq-enumerate_names.1 usr/share/man/man1/fastaq-expand_nucleotides.1 usr/share/man/man1/fastaq-fasta_to_fastq.1 usr/share/man/man1/fastaq-filter.1 usr/share/man/man1/fastaq-get_ids.1 usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 usr/share/man/man1/fastaq-interleave.1 usr/share/man/man1/fastaq-make_random_contigs.1 usr/share/man/man1/fastaq-merge.1 usr/share/man/man1/fastaq-replace_bases.1 usr/share/man/man1/fastaq-reverse_complement.1 usr/share/man/man1/fastaq-scaffolds_to_contigs.1 usr/share/man/man1/fastaq-search_for_seq.1 usr/share/man/man1/fastaq-sequence_trim.1 usr/share/man/man1/fastaq-sort_by_name.1 usr/share/man/man1/fastaq-sort_by_size.1 usr/share/man/man1/fastaq-split_by_base_count.1 usr/share/man/man1/fastaq-strip_illumina_suffix.1 usr/share/man/man1/fastaq-to_boulderio.1 usr/share/man/man1/fastaq-to_fake_qual.1 usr/share/man/man1/fastaq-to_fasta.1 usr/share/man/man1/fastaq-to_mira_xml.1 usr/share/man/man1/fastaq-to_orfs_gff.1 usr/share/man/man1/fastaq-to_perfect_reads.1 usr/share/man/man1/fastaq-to_random_subset.1 usr/share/man/man1/fastaq-to_tiling_bam.1 usr/share/man/man1/fastaq-to_unique_by_id.1 usr/share/man/man1/fastaq-translate.1 usr/share/man/man1/fastaq-trim_Ns_at_end.1 usr/share/man/man1/fastaq-trim_contigs.1 usr/share/man/man1/fastaq-trim_ends.1 usr/share/man/man1/fastaq-version.1 usr/share/man/man1/fastaq.1 cd '/build/reproducible-path/fastaq-3.17.0' dh_fixperms -O--buildsystem=pybuild find debian/fastaq ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/fastaq/usr/share/doc -type f -a -true -a ! -regex 'debian/fastaq/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/fastaq/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/fastaq/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/fastaq/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/fastaq/DEBIAN/postinst cat debian/fastaq.postinst.debhelper >> debian/fastaq/DEBIAN/postinst chmod 0755 -- debian/fastaq/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/fastaq/DEBIAN/prerm cat debian/fastaq.prerm.debhelper >> debian/fastaq/DEBIAN/prerm chmod 0755 -- debian/fastaq/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/fastaq/DEBIAN echo misc:Depends= >> debian/fastaq.substvars echo misc:Pre-Depends= >> debian/fastaq.substvars dpkg-gencontrol -pfastaq -ldebian/changelog -Tdebian/fastaq.substvars -cdebian/control -Pdebian/fastaq chmod 0644 -- debian/fastaq/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/fastaq/DEBIAN cd debian/fastaq >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/fastaq/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/fastaq .. dpkg-deb: building package 'fastaq' in '../fastaq_3.17.0-9_all.deb'. dpkg-genbuildinfo --build=binary -O../fastaq_3.17.0-9_amd64.buildinfo dpkg-genchanges --build=binary -O../fastaq_3.17.0-9_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3074112 and its subdirectories I: Current time: Sun Dec 29 20:21:52 -12 2024 I: pbuilder-time-stamp: 1735546912 Mon Dec 30 08:21:53 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Mon Dec 30 08:21:53 UTC 2024 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Mon Dec 30 08:26:57 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Mon Dec 30 08:26:57 UTC 2024 I: fastaq_3.17.0-9_amd64.changes: Format: 1.8 Date: Fri, 06 Dec 2024 21:44:29 +0100 Source: fastaq Binary: fastaq Architecture: all Version: 3.17.0-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: fastaq - FASTA and FASTQ file manipulation tools Closes: 1085573 Changes: fastaq (3.17.0-9) unstable; urgency=medium . * Fix Python3.12 string syntax Closes: #1085573 Checksums-Sha1: 8d766e5977b922d9d041be3b660188569a3a9eb4 47808 fastaq_3.17.0-9_all.deb 223c2f9ceb04e8f40b9520fa0ea8aaf255c6eaf9 6716 fastaq_3.17.0-9_amd64.buildinfo Checksums-Sha256: 2cf650da943f66f65ef8bdb554436c9d73d10f5b9263246ce2ff8a9f799d2c31 47808 fastaq_3.17.0-9_all.deb 05945da946bbeb7abee2e5ed08024f267dc11ed8673bc825f1830e7df9d60d8a 6716 fastaq_3.17.0-9_amd64.buildinfo Files: b41370718ca61314bf18249dad386b8b 47808 science optional fastaq_3.17.0-9_all.deb dea36b7cec142d9e7153de33905f1dd6 6716 science optional fastaq_3.17.0-9_amd64.buildinfo Mon Dec 30 08:26:58 UTC 2024 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_19-41442.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.6nzk8G85/fastaq_3.17.0-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.6nzk8G85/fastaq_3.17.0-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.6nzk8G85/fastaq_3.17.0-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.6nzk8G85/b1/fastaq_3.17.0-9_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.6nzk8G85/b2/fastaq_3.17.0-9_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.333s) 0.333s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.013s) 0.013s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 643ms CPU time consumed: 643ms Mon Dec 30 08:26:59 UTC 2024 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Mon Dec 30 08:26:59 UTC 2024 I: fastaq from unstable built successfully and reproducibly on amd64. Mon Dec 30 08:27:01 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Dec 30 08:27:01 UTC 2024 I: Submitting 8.0K b1/fastaq_3.17.0-9_amd64.buildinfo.asc Mon Dec 30 08:27:01 UTC 2024 I: Submitting 8.0K b2/fastaq_3.17.0-9_amd64.buildinfo.asc Mon Dec 30 08:27:02 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Dec 30 08:27:02 UTC 2024 I: Done submitting .buildinfo files. Mon Dec 30 08:27:02 UTC 2024 I: Removing signed fastaq_3.17.0-9_amd64.buildinfo.asc files: removed './b1/fastaq_3.17.0-9_amd64.buildinfo.asc' removed './b2/fastaq_3.17.0-9_amd64.buildinfo.asc'