Wed Jun 12 02:39:04 UTC 2024 I: starting to build dipy/unstable/amd64 on jenkins on '2024-06-12 02:39' Wed Jun 12 02:39:04 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_8/24006/console.log Wed Jun 12 02:39:04 UTC 2024 I: Downloading source for unstable/dipy=1.9.0-3 --2024-06-12 02:39:04-- http://deb.debian.org/debian/pool/main/d/dipy/dipy_1.9.0-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2947 (2.9K) [text/prs.lines.tag] Saving to: ‘dipy_1.9.0-3.dsc’ 0K .. 100% 385M=0s 2024-06-12 02:39:04 (385 MB/s) - ‘dipy_1.9.0-3.dsc’ saved [2947/2947] Wed Jun 12 02:39:04 UTC 2024 I: dipy_1.9.0-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: dipy Binary: python3-dipy, python3-dipy-lib, python-dipy-doc Architecture: any all Version: 1.9.0-3 Maintainer: Debian Med Packaging Team Uploaders: Yaroslav Halchenko , Michael Hanke , Étienne Mollier Homepage: https://dipy.org Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/dipy Vcs-Git: https://salsa.debian.org/med-team/dipy.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: python3-all, python3-matplotlib, python3-nibabel, python3-pytest, python3-sklearn, python3-tables, python3-vtk9, xauth, xvfb Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, libgomp1, cython3, python-is-python3, python3-all-dev, python3-setuptools, python3-mesonpy, python3-numpy, python3-scipy, python3-h5py , python3-matplotlib , python3-nibabel , python3-pil.imagetk , python3-pytest , python3-pandas , python3-tables , python3-tk , python3-trx-python , python3-sklearn , python3-tqdm , xvfb , xauth Build-Depends-Indep: python3-sphinx , python3-numpydoc , python3-skimage , python3-sphinx-design Package-List: python-dipy-doc deb doc optional arch=all python3-dipy deb python optional arch=all python3-dipy-lib deb python optional arch=any Checksums-Sha1: 10a246b509c519655a8af8df949fa05d60af458d 6516685 dipy_1.9.0.orig.tar.gz 97163b210ad44c9d6a19e99b24df692bdf4e95d8 16476 dipy_1.9.0-3.debian.tar.xz Checksums-Sha256: 2760c3d1456dd3620c88836b2aa7d576e73bea10a28ccd795f1582bfaefb4ff1 6516685 dipy_1.9.0.orig.tar.gz 13ea52880874a502574b3868b155e93573bed925d05f172751cc00ff4a51c3ab 16476 dipy_1.9.0-3.debian.tar.xz Files: 7df1186f94264d6e658c4b0116754c50 6516685 dipy_1.9.0.orig.tar.gz 170cd3ce1cbf654c858502abc9bc8c25 16476 dipy_1.9.0-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmZODVIACgkQPCZ2P2xn 5uKVmhAAqAObALDgz0fnJpPcHLZXW5sPp9LdUiVuqAChmBtbLra5HiU1fXI5Tm98 tveJwDlg6YH3c4wIxryyJE8sNj+ftDNw9PTGmiSQoKoPS4/J5YbkdSY8UQpSF7dX z7yv4qJQBK3gXG/OAqB7in6GqNowWdRAFnwzX6hIaUFcg40IAFTCGhFoYgYHC/sp 2/qQ3EpprYhvDFU0Xs2ENPUpW98OBqcIcgtB1thDxp/7pcMvPEHYohtSfnT8dtKZ umAEL94LaquxFVla6p9LfdkB4R07C2ExssQVom99uWWLy5ejgOcY4R9e3AzRi2Fc ObSwt4tikKkr2Qs7iDcefdOjYciDCJBDyFbOfiBGIrHN2cTYrf+ZBhRibqaXc67b J3amaWGc7W1oXnut24xkTkXJskmX2S1nBefaEKQ4AlPfbLt7yIsw8tEscqBkjNs+ JNZHwApYxT3WOd/eSYnUipwcH/eIUsYRBDgwnAwMfCWUBPGRf5X5yDSYLs7uQy3Y h73Q8B0+fLiG5ZeYR7zwIRqEYWKdzPv8cH1W+KbnmDKxrG3YB/5UUCKd5tlK5CVw oDbddtUYBH3zPwilp663kbT7jdEa5Jr86JRNdx056KTVztkULHNm3NZWDnOfMTt0 WbdRhCyv+CVd5FbjtW4qdQui+kvqZ4O3bKRlqlEAgVhjIDB/ljo= =Tj4T -----END PGP SIGNATURE----- Wed Jun 12 02:39:04 UTC 2024 I: Checking whether the package is not for us Wed Jun 12 02:39:04 UTC 2024 I: Starting 1st build on remote node ionos15-amd64.debian.net. Wed Jun 12 02:39:04 UTC 2024 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Wed Jun 12 03:34:58 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jul 14 21:02:06 -12 2025 I: pbuilder-time-stamp: 1752570126 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dipy_1.9.0-3.dsc] I: copying [./dipy_1.9.0.orig.tar.gz] I: copying [./dipy_1.9.0-3.debian.tar.xz] I: Extracting source gpgv: Signature made Wed May 22 15:20:50 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./dipy_1.9.0-3.dsc: no acceptable signature found dpkg-source: info: extracting dipy in dipy-1.9.0 dpkg-source: info: unpacking dipy_1.9.0.orig.tar.gz dpkg-source: info: unpacking dipy_1.9.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying deb_no_sources_for_docs dpkg-source: info: applying skip-tests-needing-internet.patch dpkg-source: info: applying fix-i386.patch dpkg-source: info: applying skip_wall-clock_test.patch dpkg-source: info: applying no-network.patch dpkg-source: info: applying skip-streamwarp-test-in-big-endian.patch dpkg-source: info: applying relay_comparison.patch dpkg-source: info: applying sphinx-default.patch dpkg-source: info: applying fix-privacy-breaches.patch dpkg-source: info: applying pytest-8.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4185279/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='4e23cecd5d0e40afa7c85b2f005bce43' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4185279' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.avjxISDF/pbuilderrc_vMHS --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.avjxISDF/b1 --logfile b1/build.log dipy_1.9.0-3.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 5 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4185279/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, libgomp1, cython3, python-is-python3, python3-all-dev, python3-setuptools, python3-mesonpy, python3-numpy, python3-scipy, python3-h5py, python3-matplotlib, python3-nibabel, python3-pil.imagetk, python3-pytest, python3-pandas, python3-tables, python3-tk, python3-trx-python, python3-sklearn, python3-tqdm, xvfb, xauth, python3-sphinx, python3-numpydoc, python3-skimage, python3-sphinx-design dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19713 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python-is-python3; however: Package python-is-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-mesonpy; however: Package python3-mesonpy is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-nibabel; however: Package python3-nibabel is not installed. pbuilder-satisfydepends-dummy depends on python3-pil.imagetk; however: Package python3-pil.imagetk is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-tables; however: Package python3-tables is not installed. pbuilder-satisfydepends-dummy depends on python3-tk; however: Package python3-tk is not installed. pbuilder-satisfydepends-dummy depends on python3-trx-python; however: Package python3-trx-python is not installed. pbuilder-satisfydepends-dummy depends on python3-sklearn; however: Package python3-sklearn is not installed. pbuilder-satisfydepends-dummy depends on python3-tqdm; however: Package python3-tqdm is not installed. pbuilder-satisfydepends-dummy depends on xvfb; however: Package xvfb is not installed. pbuilder-satisfydepends-dummy depends on xauth; however: Package xauth is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-numpydoc; however: Package python3-numpydoc is not installed. pbuilder-satisfydepends-dummy depends on python3-skimage; however: Package python3-skimage is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-design; however: Package python3-sphinx-design is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libblosc1{a} libblosc2-3{a} libbrotli1{a} libbsd0{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-hl-100t64{a} libice6{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libllvm17t64{a} liblzf1{a} liblzo2-2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libopenjp2-7{a} libpciaccess0{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv0{a} libsm6{a} libsnappy1v5{a} libssh2-1t64{a} libsz2{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunwind8{a} libvulkan1{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxfont2{a} libxft2{a} libxkbfile1{a} libxml2{a} libxmu6{a} libxmuu1{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxslt1.1{a} libxss1{a} libxt6t64{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} ninja-build{a} openssl{a} po-debconf{a} procps{a} pybuild-plugin-pyproject{a} python-babel-localedata{a} python-is-python3{a} python-matplotlib-data{a} python-tables-data{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-babel{a} python3-brotli{a} python3-build{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cpuinfo{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-deepdiff{a} python3-dev{a} python3-distutils{a} python3-docutils{a} python3-fonttools{a} python3-fs{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-imageio{a} python3-imagesize{a} python3-iniconfig{a} python3-installer{a} python3-jinja2{a} python3-joblib{a} python3-jsonpickle{a} python3-kiwisolver{a} python3-lazy-loader{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-mesonpy{a} python3-minimal{a} python3-mpmath{a} python3-networkx{a} python3-nibabel{a} python3-numexpr{a} python3-numpy{a} python3-numpydoc{a} python3-ordered-set{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygments{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pyproject-metadata{a} python3-pytest{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-setuptools-scm{a} python3-six{a} python3-skimage{a} python3-skimage-lib{a} python3-sklearn{a} python3-sklearn-lib{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sphinx-design{a} python3-sympy{a} python3-tables{a} python3-tables-lib{a} python3-tabulate{a} python3-threadpoolctl{a} python3-tifffile{a} python3-tk{a} python3-toml{a} python3-tqdm{a} python3-trx-python{a} python3-tz{a} python3-ufolib2{a} python3-urllib3{a} python3-wheel{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} x11-xkb-utils{a} xauth{a} xkb-data{a} xml-core{a} xserver-common{a} xvfb{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules lynx mesa-vulkan-drivers patchelf psmisc publicsuffix python3-bottleneck python3-bs4 python3-clevercsv python3-cssselect python3-dask python3-dipy python3-fuse python3-gdal python3-html5lib python3-numba python3-odf python3-olefile python3-openpyxl python3-psutil python3-pydicom python3-pydot python3-pygraphviz python3-simplejson python3-yaml shared-mime-info wget xdg-user-dirs xfonts-base 0 packages upgraded, 282 newly installed, 0 to remove and 0 not upgraded. Need to get 256 MB of archives. After unpacking 1119 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.3-1 [809 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.3-1 [2139 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31 [15.4 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.2.2-1 [1364 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.1-8.1 [96.2 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-2 [1411 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1 [1034 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2 [144 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b1 [54.2 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b1 [17.0 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.14-1 [784 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get: 58 http://deb.debian.org/debian unstable/main amd64 cython3 amd64 3.0.10+dfsg-5 [3571 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 65 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3 [670 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 python3-lib2to3 all 3.12.3-3.1 [77.7 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 python3-distutils all 3.12.3-3.1 [131 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20240422 [107 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 docutils-common all 0.20.1+dfsg-3 [128 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 fonts-lyx all 2.4.0-1 [189 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libsnappy1v5 amd64 1.2.1-1 [29.1 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libblosc1 amd64 1.21.5+ds-1+b1 [49.6 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libblosc2-3 amd64 2.14.4+ds-2 [186 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 90 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.62.1-1 [75.5 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.0-5 [215 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.8.0-1 [441 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.121-2 [7972 B] Get: 102 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.121-2 [38.3 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.121-2 [22.0 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b1 [51.9 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libdrm-intel1 amd64 2.4.121-2 [62.7 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libdrm-radeon1 amd64 2.4.121-2 [22.3 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20240517-1 [93.3 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.6.2-1 [155 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1 [23.0 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.1.0-1 [836 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libglvnd0 amd64 1.7.0-1+b1 [56.3 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libglapi-mesa amd64 24.1.1-2 [36.6 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libx11-xcb1 amd64 2:1.8.7-1+b1 [232 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libxcb-dri2-0 amd64 1.17.0-2 [106 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [107 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libxcb-glx0 amd64 1.17.0-2 [122 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libxcb-present0 amd64 1.17.0-2 [105 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libxcb-randr0 amd64 1.17.0-2 [116 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2 [105 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libxcb-sync1 amd64 1.17.0-2 [108 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [109 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libxfixes3 amd64 1:6.0.0-2+b1 [20.3 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libxshmfence1 amd64 1.3-1+b1 [8852 B] Get: 125 http://deb.debian.org/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libvulkan1 amd64 1.3.283.0-1 [125 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libllvm17t64 amd64 1:17.0.6-12 [23.7 MB] Get: 129 http://deb.debian.org/debian unstable/main amd64 libsensors-config all 1:3.6.0-10 [14.6 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libsensors5 amd64 1:3.6.0-10 [34.7 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libgl1-mesa-dri amd64 24.1.1-2 [8635 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libglx-mesa0 amd64 24.1.1-2 [152 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libglx0 amd64 1.7.0-1+b1 [35.0 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libgl1 amd64 1.7.0-1+b1 [89.8 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.80.3-1 [1485 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get: 139 http://deb.debian.org/debian unstable/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.3 [1241 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.3 [63.3 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.0.10-1+b1 [56.7 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 2.18.0-1+b1 [35.3 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 7.2.6-8 [150 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 liblzf1 amd64 3.6-4+b1 [10.4 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 liblzo2-2 amd64 2.10-3 [54.4 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libpython3.11t64 amd64 3.11.9-1 [1960 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libpython3.11-dev amd64 3.11.9-1 [4513 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.11.8-1 [9560 B] Get: 162 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.3-1 [1951 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libpython3.12t64 amd64 3.12.3-1 [2107 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 libpython3.12-dev amd64 3.12.3-1 [5069 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.11.8-1 [1072 B] Get: 166 http://deb.debian.org/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-6+b1 [245 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.1-1+b1 [14.2 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1+b1 [33.6 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 libunwind8 amd64 1.6.2-3.1 [51.5 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [110 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.4.0-0.1 [123 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2 [187 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-3+b2 [58.7 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b1 [56.1 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.14-1+b2 [199 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 libxfont2 amd64 1:2.0.6-1+b1 [132 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 libxkbfile1 amd64 1:1.1.0-1+b1 [76.6 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 libxmuu1 amd64 2:1.1.3-3+b2 [21.9 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 libxrandr2 amd64 2:1.5.4-1 [36.1 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.35-1+b1 [232 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 ninja-build amd64 1.12.1-1 [142 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 meson all 1.4.1-1 [604 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.0-1 [45.5 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-hooks all 1.1.0-1 [11.3 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.43.0-1 [52.5 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 python3-build all 1.2.1-1 [34.1 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 pybuild-plugin-pyproject all 6.20240422 [11.1 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 python-babel-localedata all 2.14.0-1 [5701 kB] Get: 194 http://deb.debian.org/debian unstable/main amd64 python-is-python3 all 3.11.4-1 [3044 B] Get: 195 http://deb.debian.org/debian unstable/main amd64 python-matplotlib-data all 3.6.3-2 [2744 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 python-tables-data all 3.9.2-2 [49.8 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.3-1 [659 kB] Get: 199 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.11.8-1 [1056 B] Get: 200 http://deb.debian.org/debian unstable/main amd64 python3.11-dev amd64 3.11.9-1 [501 kB] Get: 201 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.11.8-1 [26.1 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 python3.12-dev amd64 3.12.3-1 [499 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.11.8-1 [1072 B] Get: 204 http://deb.debian.org/debian unstable/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 python3-attr all 23.2.0-2 [65.5 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 python3-babel all 2.14.0-1 [111 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 python3-brotli amd64 1.1.0-2+b3 [312 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2023.11.17-1 [155 kB] Get: 210 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [5465 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 python3-contourpy amd64 1.0.7-3 [285 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 python3-cpuinfo all 9.0.0+git20221119-1 [23.2 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get: 216 http://deb.debian.org/debian unstable/main amd64 python3-six all 1.16.0-6 [16.3 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-2 [79.4 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 python3-jsonpickle all 3.0.4+dfsg-1 [41.4 kB] Get: 220 http://deb.debian.org/debian unstable/main amd64 python3-ordered-set all 4.1.0-1 [9628 B] Get: 221 http://deb.debian.org/debian unstable/main amd64 python3-deepdiff all 6.7.1-2 [65.6 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 python3-roman all 3.3-3 [9880 B] Get: 223 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.20.1+dfsg-3 [389 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.12.0-2 [21.0 MB] Get: 225 http://deb.debian.org/debian unstable/main amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get: 226 http://deb.debian.org/debian unstable/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 227 http://deb.debian.org/debian unstable/main amd64 python3-sympy all 1.12.1-1 [3869 kB] Get: 228 http://deb.debian.org/debian unstable/main amd64 python3-fs all 2.4.16-4 [95.4 kB] Get: 229 http://deb.debian.org/debian unstable/main amd64 python3-lxml amd64 5.2.1-1 [1995 kB] Get: 230 http://deb.debian.org/debian unstable/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b3 [25.5 kB] Get: 231 http://deb.debian.org/debian unstable/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get: 232 http://deb.debian.org/debian unstable/main amd64 python3-fonttools amd64 4.46.0-1 [1623 kB] Get: 233 http://deb.debian.org/debian unstable/main amd64 python3-h5py-serial amd64 3.10.0-1+b3 [1400 kB] Get: 234 http://deb.debian.org/debian unstable/main amd64 python3-h5py all 3.10.0-1 [14.4 kB] Get: 235 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.6-2.1 [38.6 kB] Get: 236 http://deb.debian.org/debian unstable/main amd64 python3-tk amd64 3.12.3-3.1 [113 kB] Get: 237 http://deb.debian.org/debian unstable/main amd64 python3-pil.imagetk amd64 10.3.0-2 [79.5 kB] Get: 238 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 10.3.0-2 [564 kB] Get: 239 http://deb.debian.org/debian unstable/main amd64 python3-imageio all 2.34.1-1 [228 kB] Get: 240 http://deb.debian.org/debian unstable/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 241 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 242 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 2.1.5-1 [14.5 kB] Get: 243 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 244 http://deb.debian.org/debian unstable/main amd64 python3-joblib all 1.3.2-2 [218 kB] Get: 245 http://deb.debian.org/debian unstable/main amd64 python3-kiwisolver amd64 1.4.5-1 [80.7 kB] Get: 246 http://deb.debian.org/debian unstable/main amd64 python3-lazy-loader all 0.3-1 [11.1 kB] Get: 247 http://deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 248 http://deb.debian.org/debian unstable/main amd64 python3-matplotlib amd64 3.6.3-2 [8167 kB] Get: 249 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-metadata all 0.8.0-1 [9648 B] Get: 250 http://deb.debian.org/debian unstable/main amd64 python3-mesonpy all 0.15.0-1 [101 kB] Get: 251 http://deb.debian.org/debian unstable/main amd64 python3-networkx all 3.2.1-4 [14.2 MB] Get: 252 http://deb.debian.org/debian unstable/main amd64 python3-nibabel all 5.2.1-2 [2659 kB] Get: 253 http://deb.debian.org/debian unstable/main amd64 python3-numexpr amd64 2.10.0-2 [101 kB] Get: 254 http://deb.debian.org/debian unstable/main amd64 sphinx-common all 7.2.6-8 [702 kB] Get: 255 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get: 256 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 1.26.18-2 [116 kB] Get: 257 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.31.0+dfsg-2 [68.7 kB] Get: 258 http://deb.debian.org/debian unstable/main amd64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 259 http://deb.debian.org/debian unstable/main amd64 python3-sphinx all 7.2.6-8 [552 kB] Get: 260 http://deb.debian.org/debian unstable/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 261 http://deb.debian.org/debian unstable/main amd64 python3-numpydoc all 1.6.0-2 [49.6 kB] Get: 262 http://deb.debian.org/debian unstable/main amd64 python3-pandas-lib amd64 2.1.4+dfsg-8 [7882 kB] Get: 263 http://deb.debian.org/debian unstable/main amd64 python3-pandas all 2.1.4+dfsg-8 [3015 kB] Get: 264 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 265 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.2.2-1 [248 kB] Get: 266 http://deb.debian.org/debian unstable/main amd64 python3-setuptools-scm all 8.1.0-1 [40.5 kB] Get: 267 http://deb.debian.org/debian unstable/main amd64 python3-skimage-lib amd64 0.23.2-1 [4023 kB] Get: 268 http://deb.debian.org/debian unstable/main amd64 python3-tifffile all 20240522-1 [184 kB] Get: 269 http://deb.debian.org/debian unstable/main amd64 python3-skimage all 0.23.2-1 [20.6 MB] Get: 270 http://deb.debian.org/debian unstable/main amd64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get: 271 http://deb.debian.org/debian unstable/main amd64 python3-sklearn-lib amd64 1.4.2+dfsg-1 [6606 kB] Get: 272 http://deb.debian.org/debian unstable/main amd64 python3-sklearn all 1.4.2+dfsg-1 [2247 kB] Get: 273 http://deb.debian.org/debian unstable/main amd64 python3-sphinx-design all 0.6.0-2 [883 kB] Get: 274 http://deb.debian.org/debian unstable/main amd64 python3-tables-lib amd64 3.9.2-2+b1 [835 kB] Get: 275 http://deb.debian.org/debian unstable/main amd64 python3-tables all 3.9.2-2 [345 kB] Get: 276 http://deb.debian.org/debian unstable/main amd64 python3-tqdm all 4.66.4-1 [90.8 kB] Get: 277 http://deb.debian.org/debian unstable/main amd64 python3-trx-python all 0.2.9-1 [40.2 kB] Get: 278 http://deb.debian.org/debian unstable/main amd64 x11-xkb-utils amd64 7.7+8+b1 [160 kB] Get: 279 http://deb.debian.org/debian unstable/main amd64 xauth amd64 1:1.1.2-1 [36.0 kB] Get: 280 http://deb.debian.org/debian unstable/main amd64 xkb-data all 2.41-2 [795 kB] Get: 281 http://deb.debian.org/debian unstable/main amd64 xserver-common all 2:21.1.12-1 [2391 kB] Get: 282 http://deb.debian.org/debian unstable/main amd64 xvfb amd64 2:21.1.12-1 [3162 kB] Fetched 256 MB in 9s (27.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19713 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20029 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21021 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../001-libpython3.12-minimal_3.12.3-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../002-python3.12-minimal_3.12.3-1_amd64.deb ... Unpacking python3.12-minimal (3.12.3-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../003-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../004-libproc2-0_2%3a4.0.4-4_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../005-procps_2%3a4.0.4-4_amd64.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../006-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../007-openssl_3.2.2-1_amd64.deb ... Unpacking openssl (3.2.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../008-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../009-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../010-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../011-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../012-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../013-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../014-groff-base_1.23.0-4_amd64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../015-bsdextrautils_2.40.1-8.1_amd64.deb ... Unpacking bsdextrautils (2.40.1-8.1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../016-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../017-man-db_2.12.1-2_amd64.deb ... Unpacking man-db (2.12.1-2) ... Selecting previously unselected package m4. Preparing to unpack .../018-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../019-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../020-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../021-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../022-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../023-libtcl8.6_8.6.14+dfsg-1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.14+dfsg-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../024-libbrotli1_1.1.0-2+b3_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b3) ... Selecting previously unselected package libpng16-16t64:amd64. Preparing to unpack .../025-libpng16-16t64_1.6.43-5_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.43-5) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../026-libfreetype6_2.13.2+dfsg-1+b4_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../029-fontconfig-config_2.15.0-1.1_amd64.deb ... Unpacking fontconfig-config (2.15.0-1.1) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../030-libfontconfig1_2.15.0-1.1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.15.0-1.1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../031-libxau6_1%3a1.0.9-1+b1_amd64.deb ... 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Unpacking xvfb (2:21.1.12-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libgraphite2-3:amd64 (1.3.14-2) ... Setting up liblcms2-2:amd64 (2.14-2+b1) ... Setting up libpixman-1-0:amd64 (0.42.2-1+b1) ... Setting up libsharpyuv0:amd64 (1.4.0-0.1) ... Setting up libpciaccess0:amd64 (0.17-3+b1) ... Setting up libxau6:amd64 (1:1.0.9-1+b1) ... Setting up libkeyutils1:amd64 (1.6.3-3) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-4+b1) ... Setting up bsdextrautils (2.40.1-8.1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglvnd0:amd64 (1.7.0-1+b1) ... Setting up fonts-lyx (2.4.0-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:amd64 (1.1.0-2+b3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up libpython3.12-minimal:amd64 (3.12.3-1) ... 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Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Jul 15 09:03:55 UTC 2025. Universal Time is now: Tue Jul 15 09:03:55 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up libfontenc1:amd64 (1:1.1.8-1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:amd64 (4.8.12-3.1+b2) ... Setting up libglib2.0-0t64:amd64 (2.80.3-1) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.6.2-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up liblzf1:amd64 (3.6-4+b1) ... 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Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up python3-jsonpickle (3.0.4+dfsg-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-joblib (1.3.2-2) ... Setting up python3-pyproject-metadata (0.8.0-1) ... Setting up python3-babel (2.14.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-lz4 (4.0.2+dfsg-1+b3) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-pytest (8.2.2-1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up x11-xkb-utils (7.7+8+b1) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3-tqdm (4.66.4-1) ... Setting up python3-threadpoolctl (3.1.0-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up meson (1.4.1-1) ... Setting up python3-all (3.11.8-1) ... Setting up python3-ordered-set (4.1.0-1) ... Setting up python3-tk:amd64 (3.12.3-3.1) ... Setting up python3-networkx (3.2.1-4) ... Setting up python3-setuptools-scm (8.1.0-1) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-pil.imagetk:amd64 (10.3.0-2) ... Setting up python3-dev (3.11.8-1) ... Setting up python3-requests (2.31.0+dfsg-2) ... Setting up python3-numpy (1:1.26.4+ds-10) ... Setting up python3-mesonpy (0.15.0-1) ... Setting up python3-contourpy (1.0.7-3) ... Setting up xserver-common (2:21.1.12-1) ... Setting up python3-imageio (2.34.1-1) ... Setting up dh-python (6.20240422) ... Setting up python3-all-dev (3.11.8-1) ... Setting up python3-deepdiff (6.7.1-2) ... Setting up python3-scipy (1.12.0-2) ... Setting up python3-skimage-lib:amd64 (0.23.2-1) ... Setting up pybuild-plugin-pyproject (6.20240422) ... Setting up python3-tables-lib (3.9.2-2+b1) ... Setting up xvfb (2:21.1.12-1) ... Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-8) ... Setting up python3-sklearn-lib:amd64 (1.4.2+dfsg-1) ... Setting up python3-h5py-serial (3.10.0-1+b3) ... Setting up python3-tifffile (20240522-1) ... Setting up python3-pandas (2.1.4+dfsg-8) ... Setting up python3-nibabel (5.2.1-2) ... Setting up python3-h5py (3.10.0-1) ... Setting up python3-sklearn (1.4.2+dfsg-1) ... Setting up python3-numexpr (2.10.0-2) ... Setting up python3-trx-python (0.2.9-1) ... Setting up python3-tables (3.9.2-2) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-fonttools (4.46.0-1) ... Setting up python3-matplotlib (3.6.3-2) ... Setting up python3-skimage (0.23.2-1) ... Processing triggers for libc-bin (2.38-13) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.20.1+dfsg-3) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.20.1+dfsg-3) ... Setting up python3-sphinx (7.2.6-8) ... Setting up python3-sphinx-design (0.6.0-2) ... Setting up python3-numpydoc (1.6.0-2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/dipy-1.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dipy_1.9.0-3_source.changes dpkg-buildpackage: info: source package dipy dpkg-buildpackage: info: source version 1.9.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from dipy-1.9.0/debian/source/options: --extend-diff-ignore=(^|/)dipy/COMMIT_INFO.txt$ debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' dh_auto_clean || true rm -rf .pybuild __pycache__ find dipy -name "*\.c" -delete make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' dh_autoreconf_clean -O--buildsystem=pybuild debian/rules execute_before_dh_clean make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' rm -rf build doc-stamp /usr/bin/make -C doc clean make[2]: Entering directory '/build/reproducible-path/dipy-1.9.0/doc' rm -rf reference/*.rst rm -rf reference_cmd/*.rst rm -rf examples_revamped cd examples_built && find . -not -name "README" -not -name ".gitignore" -exec rm -rfd {} \; || true rm: refusing to remove '.' or '..' directory: skipping '.' rm -rf _build/* rm *-stamp rm: cannot remove '*-stamp': No such file or directory make[2]: [Makefile:32: clean] Error 1 (ignored) make[2]: Leaving directory '/build/reproducible-path/dipy-1.9.0/doc' make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' chmod 0644 doc/examples/*.py dh_auto_build I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy --config-setting compile-args=--verbose --config-setting setup-args=--wrap-mode=nodownload --config-setting setup-args=--prefix=/usr --config-setting setup-args=--sysconfdir=/etc --config-setting setup-args=--localstatedir=/var --config-setting setup-args=--libdir=lib/x86_64-linux-gnu * Building wheel... + meson setup /build/reproducible-path/dipy-1.9.0 /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l -Dbuildtype=release -Db_ndebug=if-release -Db_vscrt=md --wrap-mode=nodownload --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/x86_64-linux-gnu --native-file=/build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/meson-python-native-file.ini The Meson build system Version: 1.4.1 Source dir: /build/reproducible-path/dipy-1.9.0 Build dir: /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l Build type: native build Project name: dipy Project version: 1.9.0 C compiler for the host machine: cc (gcc 13.2.0 "cc (Debian 13.2.0-25) 13.2.0") C linker for the host machine: cc ld.bfd 2.42 C++ compiler for the host machine: c++ (gcc 13.2.0 "c++ (Debian 13.2.0-25) 13.2.0") C++ linker for the host machine: c++ ld.bfd 2.42 Cython compiler for the host machine: cython (cython 3.0.10) Host machine cpu family: x86_64 Host machine cpu: x86_64 Program python found: YES (/usr/bin/python3.12) Did not find pkg-config by name 'pkg-config' Found pkg-config: NO Run-time dependency python found: YES 3.12 Program cython found: YES (/usr/bin/cython) Library m found: YES Compiler for C supports arguments -Wno-maybe-uninitialized: YES Compiler for C supports arguments -Wno-discarded-qualifiers: YES Compiler for C supports arguments -Wno-empty-body: YES Compiler for C supports arguments -Wno-implicit-function-declaration: YES Compiler for C supports arguments -Wno-parentheses: YES Compiler for C supports arguments -Wno-switch: YES Compiler for C supports arguments -Wno-unused-label: YES Compiler for C supports arguments -Wno-unused-variable: YES Compiler for C++ supports arguments -Wno-cpp: YES Compiler for C++ supports arguments -Wno-deprecated-declarations: YES Compiler for C++ supports arguments -Wno-class-memaccess: YES Compiler for C++ supports arguments -Wno-format-truncation: YES Compiler for C++ supports arguments -Wno-format-extra-args: YES Compiler for C++ supports arguments -Wno-format: NO Compiler for C++ supports arguments -Wno-non-virtual-dtor: YES Compiler for C++ supports arguments -Wno-sign-compare: YES Compiler for C++ supports arguments -Wno-switch: YES Compiler for C++ supports arguments -Wno-terminate: YES Compiler for C++ supports arguments -Wno-unused-but-set-variable: YES Compiler for C++ supports arguments -Wno-unused-function: YES Compiler for C++ supports arguments -Wno-unused-local-typedefs: YES Compiler for C++ supports arguments -Wno-unused-variable: YES Compiler for C++ supports arguments -Wno-int-in-bool-context: YES Run-time dependency OpenMP found: YES 4.5 Checking if "SSE intrinsics" compiles: YES Checking if "compiler supports SSE4.1 intrinsics" : links: NO Checking if "compiler supports AVX intrinsics" : links: NO Checking if "ARM NEON intrinsics" compiles: NO Build targets in project: 45 dipy 1.9.0 User defined options Native files : /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/meson-python-native-file.ini buildtype : release libdir : lib/x86_64-linux-gnu localstatedir: /var prefix : /usr sysconfdir : /etc wrap_mode : nodownload b_ndebug : if-release b_vscrt : md Found ninja-1.12.1 at /usr/bin/ninja Generating targets: 0%| | 0/45 eta ? Writing build.ninja: 0%| | 0/188 eta ? + /usr/bin/ninja --verbose [1/123] /usr/bin/python3.12 ../dipy/../tools/version_utils.py --source-root .. [2/123] /usr/bin/meson --internal copy ../dipy/__init__.py dipy/__init__.py [3/123] /usr/bin/meson --internal copy ../dipy/../src/conditional_omp.h dipy/conditional_omp.h [4/123] /usr/bin/meson --internal copy ../dipy/../src/cythonutils.h dipy/cythonutils.h [5/123] /usr/bin/meson --internal copy ../dipy/../src/safe_openmp.pxd dipy/safe_openmp.pxd [6/123] /usr/bin/meson --internal copy ../dipy/../src/dpy_math.h dipy/dpy_math.h [7/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/utils/omp.cpython-312-x86_64-linux-gnu.so.p/omp.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/utils/omp.pyx [8/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/utils/fast_numpy.cpython-312-x86_64-linux-gnu.so.p/fast_numpy.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/utils/fast_numpy.pyx [9/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/distances.cpython-312-x86_64-linux-gnu.so.p/distances.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/tracking/distances.pyx [10/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/reconst/quick_squash.cpython-312-x86_64-linux-gnu.so.p/quick_squash.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/reconst/quick_squash.pyx [11/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/nlmeans_block.cpython-312-x86_64-linux-gnu.so.p/nlmeans_block.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/denoise/nlmeans_block.pyx [12/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/reconst/vec_val_sum.cpython-312-x86_64-linux-gnu.so.p/vec_val_sum.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/reconst/vec_val_sum.pyx [13/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/propspeed.cpython-312-x86_64-linux-gnu.so.p/propspeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/tracking/propspeed.pyx [14/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/shift_twist_convolution.cpython-312-x86_64-linux-gnu.so.p/shift_twist_convolution.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/denoise/shift_twist_convolution.pyx [15/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/cythonutils.cpython-312-x86_64-linux-gnu.so.p/cythonutils.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/segment/cythonutils.pyx [16/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/reconst/eudx_direction_getter.cpython-312-x86_64-linux-gnu.so.p/eudx_direction_getter.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/reconst/eudx_direction_getter.pyx [17/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/probabilistic_direction_getter.cpython-312-x86_64-linux-gnu.so.p/probabilistic_direction_getter.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/direction/probabilistic_direction_getter.pyx [18/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/clustering_algorithms.cpython-312-x86_64-linux-gnu.so.p/clustering_algorithms.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/segment/clustering_algorithms.pyx [19/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/bundlemin.cpython-312-x86_64-linux-gnu.so.p/bundlemin.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/align/bundlemin.pyx [20/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/bootstrap_direction_getter.cpython-312-x86_64-linux-gnu.so.p/bootstrap_direction_getter.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/direction/bootstrap_direction_getter.pyx [21/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/fbcmeasures.cpython-312-x86_64-linux-gnu.so.p/fbcmeasures.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/tracking/fbcmeasures.pyx [22/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/enhancement_kernel.cpython-312-x86_64-linux-gnu.so.p/enhancement_kernel.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/denoise/enhancement_kernel.pyx [23/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/utils/tests/test_fast_numpy.cpython-312-x86_64-linux-gnu.so.p/test_fast_numpy.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/utils/tests/test_fast_numpy.pyx [24/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/closest_peak_direction_getter.cpython-312-x86_64-linux-gnu.so.p/closest_peak_direction_getter.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/direction/closest_peak_direction_getter.pyx [25/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/localtrack.cpython-312-x86_64-linux-gnu.so.p/localtrack.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/tracking/localtrack.pyx [26/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/direction_getter.cpython-312-x86_64-linux-gnu.so.p/direction_getter.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/tracking/direction_getter.pyx [27/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/denspeed.cpython-312-x86_64-linux-gnu.so.p/denspeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/denoise/denspeed.pyx [28/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/mrf.cpython-312-x86_64-linux-gnu.so.p/mrf.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/segment/mrf.pyx [29/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/metricspeed.cpython-312-x86_64-linux-gnu.so.p/metricspeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/segment/metricspeed.pyx [30/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/vox2track.cpython-312-x86_64-linux-gnu.so.p/vox2track.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/tracking/vox2track.pyx [31/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/ptt_direction_getter.cpython-312-x86_64-linux-gnu.so.p/ptt_direction_getter.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/direction/ptt_direction_getter.pyx [32/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so.p/stopping_criterion.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/tracking/stopping_criterion.pyx [33/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/clusteringspeed.cpython-312-x86_64-linux-gnu.so.p/clusteringspeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/segment/clusteringspeed.pyx [34/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/streamlinespeed.cpython-312-x86_64-linux-gnu.so.p/streamlinespeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/tracking/streamlinespeed.pyx [35/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/pca_noise_estimate.cpython-312-x86_64-linux-gnu.so.p/pca_noise_estimate.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/denoise/pca_noise_estimate.pyx [36/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/featurespeed.cpython-312-x86_64-linux-gnu.so.p/featurespeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/segment/featurespeed.pyx [37/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/pmf.cpython-312-x86_64-linux-gnu.so.p/pmf.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/direction/pmf.pyx [38/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/transforms.cpython-312-x86_64-linux-gnu.so.p/transforms.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/align/transforms.pyx [39/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/reconst/recspeed.cpython-312-x86_64-linux-gnu.so.p/recspeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/reconst/recspeed.pyx [40/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/parzenhist.cpython-312-x86_64-linux-gnu.so.p/parzenhist.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/align/parzenhist.pyx [41/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/expectmax.cpython-312-x86_64-linux-gnu.so.p/expectmax.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/align/expectmax.pyx [42/123] cc -Idipy/utils/omp.cpython-312-x86_64-linux-gnu.so.p -Idipy/utils -I../dipy/utils -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/utils/omp.cpython-312-x86_64-linux-gnu.so.p/meson-generated_omp.c.o -MF dipy/utils/omp.cpython-312-x86_64-linux-gnu.so.p/meson-generated_omp.c.o.d -o dipy/utils/omp.cpython-312-x86_64-linux-gnu.so.p/meson-generated_omp.c.o -c dipy/utils/omp.cpython-312-x86_64-linux-gnu.so.p/omp.c [43/123] cc -Idipy/utils/fast_numpy.cpython-312-x86_64-linux-gnu.so.p -Idipy/utils -I../dipy/utils -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/utils/fast_numpy.cpython-312-x86_64-linux-gnu.so.p/meson-generated_fast_numpy.c.o -MF dipy/utils/fast_numpy.cpython-312-x86_64-linux-gnu.so.p/meson-generated_fast_numpy.c.o.d -o dipy/utils/fast_numpy.cpython-312-x86_64-linux-gnu.so.p/meson-generated_fast_numpy.c.o -c dipy/utils/fast_numpy.cpython-312-x86_64-linux-gnu.so.p/fast_numpy.c [44/123] cc -o dipy/utils/omp.cpython-312-x86_64-linux-gnu.so dipy/utils/omp.cpython-312-x86_64-linux-gnu.so.p/meson-generated_omp.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [45/123] cc -o dipy/utils/fast_numpy.cpython-312-x86_64-linux-gnu.so dipy/utils/fast_numpy.cpython-312-x86_64-linux-gnu.so.p/meson-generated_fast_numpy.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [46/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/crosscorr.cpython-312-x86_64-linux-gnu.so.p/crosscorr.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/align/crosscorr.pyx [47/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/sumsqdiff.cpython-312-x86_64-linux-gnu.so.p/sumsqdiff.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/align/sumsqdiff.pyx [48/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/core/interpolation.cpython-312-x86_64-linux-gnu.so.p/interpolation.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/core/interpolation.pyx [49/123] cc -Idipy/segment/cythonutils.cpython-312-x86_64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/segment/cythonutils.cpython-312-x86_64-linux-gnu.so.p/meson-generated_cythonutils.c.o -MF dipy/segment/cythonutils.cpython-312-x86_64-linux-gnu.so.p/meson-generated_cythonutils.c.o.d -o dipy/segment/cythonutils.cpython-312-x86_64-linux-gnu.so.p/meson-generated_cythonutils.c.o -c dipy/segment/cythonutils.cpython-312-x86_64-linux-gnu.so.p/cythonutils.c [50/123] cc -o dipy/segment/cythonutils.cpython-312-x86_64-linux-gnu.so dipy/segment/cythonutils.cpython-312-x86_64-linux-gnu.so.p/meson-generated_cythonutils.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [51/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/vector_fields.cpython-312-x86_64-linux-gnu.so.p/vector_fields.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-_yxiar0l/dipy ../dipy/align/vector_fields.pyx [52/123] cc -Idipy/reconst/vec_val_sum.cpython-312-x86_64-linux-gnu.so.p -Idipy/reconst -I../dipy/reconst -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/reconst/vec_val_sum.cpython-312-x86_64-linux-gnu.so.p/meson-generated_vec_val_sum.c.o -MF dipy/reconst/vec_val_sum.cpython-312-x86_64-linux-gnu.so.p/meson-generated_vec_val_sum.c.o.d -o dipy/reconst/vec_val_sum.cpython-312-x86_64-linux-gnu.so.p/meson-generated_vec_val_sum.c.o -c dipy/reconst/vec_val_sum.cpython-312-x86_64-linux-gnu.so.p/vec_val_sum.c [53/123] cc -o dipy/reconst/vec_val_sum.cpython-312-x86_64-linux-gnu.so dipy/reconst/vec_val_sum.cpython-312-x86_64-linux-gnu.so.p/meson-generated_vec_val_sum.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [54/123] cc -Idipy/reconst/quick_squash.cpython-312-x86_64-linux-gnu.so.p -Idipy/reconst -I../dipy/reconst -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/reconst/quick_squash.cpython-312-x86_64-linux-gnu.so.p/meson-generated_quick_squash.c.o -MF dipy/reconst/quick_squash.cpython-312-x86_64-linux-gnu.so.p/meson-generated_quick_squash.c.o.d -o dipy/reconst/quick_squash.cpython-312-x86_64-linux-gnu.so.p/meson-generated_quick_squash.c.o -c dipy/reconst/quick_squash.cpython-312-x86_64-linux-gnu.so.p/quick_squash.c [55/123] cc -o dipy/reconst/quick_squash.cpython-312-x86_64-linux-gnu.so dipy/reconst/quick_squash.cpython-312-x86_64-linux-gnu.so.p/meson-generated_quick_squash.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [56/123] cc -Idipy/reconst/eudx_direction_getter.cpython-312-x86_64-linux-gnu.so.p -Idipy/reconst -I../dipy/reconst 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dipy/reconst/eudx_direction_getter.cpython-312-x86_64-linux-gnu.so dipy/reconst/eudx_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_eudx_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [58/123] cc -Idipy/denoise/shift_twist_convolution.cpython-312-x86_64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/denoise/shift_twist_convolution.cpython-312-x86_64-linux-gnu.so.p/meson-generated_shift_twist_convolution.c.o -MF dipy/denoise/shift_twist_convolution.cpython-312-x86_64-linux-gnu.so.p/meson-generated_shift_twist_convolution.c.o.d -o dipy/denoise/shift_twist_convolution.cpython-312-x86_64-linux-gnu.so.p/meson-generated_shift_twist_convolution.c.o -c dipy/denoise/shift_twist_convolution.cpython-312-x86_64-linux-gnu.so.p/shift_twist_convolution.c [59/123] cc -o dipy/denoise/shift_twist_convolution.cpython-312-x86_64-linux-gnu.so dipy/denoise/shift_twist_convolution.cpython-312-x86_64-linux-gnu.so.p/meson-generated_shift_twist_convolution.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [60/123] cc -Idipy/tracking/propspeed.cpython-312-x86_64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/tracking/propspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_propspeed.c.o -MF dipy/tracking/propspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_propspeed.c.o.d -o dipy/tracking/propspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_propspeed.c.o -c 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/direction/probabilistic_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o -MF dipy/direction/probabilistic_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o.d -o dipy/direction/probabilistic_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o -c dipy/direction/probabilistic_direction_getter.cpython-312-x86_64-linux-gnu.so.p/probabilistic_direction_getter.c [63/123] cc -o dipy/direction/probabilistic_direction_getter.cpython-312-x86_64-linux-gnu.so dipy/direction/probabilistic_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [64/123] cc -Idipy/align/bundlemin.cpython-312-x86_64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/align/bundlemin.cpython-312-x86_64-linux-gnu.so.p/meson-generated_bundlemin.c.o -MF dipy/align/bundlemin.cpython-312-x86_64-linux-gnu.so.p/meson-generated_bundlemin.c.o.d -o dipy/align/bundlemin.cpython-312-x86_64-linux-gnu.so.p/meson-generated_bundlemin.c.o -c dipy/align/bundlemin.cpython-312-x86_64-linux-gnu.so.p/bundlemin.c [65/123] cc -Idipy/tracking/direction_getter.cpython-312-x86_64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/tracking/direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_direction_getter.c.o -MF dipy/tracking/direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_direction_getter.c.o.d -o dipy/tracking/direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_direction_getter.c.o -c dipy/tracking/direction_getter.cpython-312-x86_64-linux-gnu.so.p/direction_getter.c [66/123] cc -o dipy/tracking/direction_getter.cpython-312-x86_64-linux-gnu.so dipy/tracking/direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [67/123] cc -o dipy/align/bundlemin.cpython-312-x86_64-linux-gnu.so dipy/align/bundlemin.cpython-312-x86_64-linux-gnu.so.p/meson-generated_bundlemin.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [68/123] cc -Idipy/segment/clustering_algorithms.cpython-312-x86_64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ 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-Idipy/direction/pmf.cpython-312-x86_64-linux-gnu.so.p -Idipy/direction -I../dipy/direction -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/direction/pmf.cpython-312-x86_64-linux-gnu.so.p/meson-generated_pmf.c.o -MF dipy/direction/pmf.cpython-312-x86_64-linux-gnu.so.p/meson-generated_pmf.c.o.d -o dipy/direction/pmf.cpython-312-x86_64-linux-gnu.so.p/meson-generated_pmf.c.o -c dipy/direction/pmf.cpython-312-x86_64-linux-gnu.so.p/pmf.c [71/123] cc -o dipy/direction/pmf.cpython-312-x86_64-linux-gnu.so dipy/direction/pmf.cpython-312-x86_64-linux-gnu.so.p/meson-generated_pmf.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [72/123] cc -Idipy/denoise/denspeed.cpython-312-x86_64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD 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-I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/tracking/localtrack.cpython-312-x86_64-linux-gnu.so.p/meson-generated_localtrack.c.o -MF dipy/tracking/localtrack.cpython-312-x86_64-linux-gnu.so.p/meson-generated_localtrack.c.o.d -o dipy/tracking/localtrack.cpython-312-x86_64-linux-gnu.so.p/meson-generated_localtrack.c.o -c dipy/tracking/localtrack.cpython-312-x86_64-linux-gnu.so.p/localtrack.c [75/123] cc -Idipy/direction/bootstrap_direction_getter.cpython-312-x86_64-linux-gnu.so.p -Idipy/direction -I../dipy/direction -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/direction/bootstrap_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_bootstrap_direction_getter.c.o -MF dipy/direction/bootstrap_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_bootstrap_direction_getter.c.o.d -o dipy/direction/bootstrap_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_bootstrap_direction_getter.c.o -c dipy/direction/bootstrap_direction_getter.cpython-312-x86_64-linux-gnu.so.p/bootstrap_direction_getter.c [76/123] cc -o 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-ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/segment/metricspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_metricspeed.c.o -MF dipy/segment/metricspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_metricspeed.c.o.d -o dipy/segment/metricspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_metricspeed.c.o -c dipy/segment/metricspeed.cpython-312-x86_64-linux-gnu.so.p/metricspeed.c [95/123] cc -o dipy/segment/metricspeed.cpython-312-x86_64-linux-gnu.so dipy/segment/metricspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_metricspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong 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dipy/tracking/fbcmeasures.cpython-312-x86_64-linux-gnu.so.p/meson-generated_fbcmeasures.c.o -c dipy/tracking/fbcmeasures.cpython-312-x86_64-linux-gnu.so.p/fbcmeasures.c [97/123] cc -o dipy/tracking/fbcmeasures.cpython-312-x86_64-linux-gnu.so dipy/tracking/fbcmeasures.cpython-312-x86_64-linux-gnu.so.p/meson-generated_fbcmeasures.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [98/123] cc -Idipy/segment/featurespeed.cpython-312-x86_64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/segment/featurespeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_featurespeed.c.o -MF dipy/segment/featurespeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_featurespeed.c.o.d -o dipy/segment/featurespeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_featurespeed.c.o -c dipy/segment/featurespeed.cpython-312-x86_64-linux-gnu.so.p/featurespeed.c [99/123] cc -o dipy/segment/featurespeed.cpython-312-x86_64-linux-gnu.so dipy/segment/featurespeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_featurespeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [100/123] cc -Idipy/denoise/pca_noise_estimate.cpython-312-x86_64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/denoise/pca_noise_estimate.cpython-312-x86_64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o -MF dipy/denoise/pca_noise_estimate.cpython-312-x86_64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o.d -o dipy/denoise/pca_noise_estimate.cpython-312-x86_64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o -c dipy/denoise/pca_noise_estimate.cpython-312-x86_64-linux-gnu.so.p/pca_noise_estimate.c [101/123] cc -Idipy/align/transforms.cpython-312-x86_64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/align/transforms.cpython-312-x86_64-linux-gnu.so.p/meson-generated_transforms.c.o -MF dipy/align/transforms.cpython-312-x86_64-linux-gnu.so.p/meson-generated_transforms.c.o.d -o dipy/align/transforms.cpython-312-x86_64-linux-gnu.so.p/meson-generated_transforms.c.o -c dipy/align/transforms.cpython-312-x86_64-linux-gnu.so.p/transforms.c [102/123] cc -o dipy/denoise/pca_noise_estimate.cpython-312-x86_64-linux-gnu.so dipy/denoise/pca_noise_estimate.cpython-312-x86_64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [103/123] cc -o dipy/align/transforms.cpython-312-x86_64-linux-gnu.so dipy/align/transforms.cpython-312-x86_64-linux-gnu.so.p/meson-generated_transforms.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [104/123] cc -Idipy/tracking/streamlinespeed.cpython-312-x86_64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/tracking/streamlinespeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_streamlinespeed.c.o -MF dipy/tracking/streamlinespeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_streamlinespeed.c.o.d -o dipy/tracking/streamlinespeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_streamlinespeed.c.o -c dipy/tracking/streamlinespeed.cpython-312-x86_64-linux-gnu.so.p/streamlinespeed.c [105/123] cc -o dipy/tracking/streamlinespeed.cpython-312-x86_64-linux-gnu.so dipy/tracking/streamlinespeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_streamlinespeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [106/123] cc -Idipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o -MF dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o.d -o dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o -c dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so.p/stopping_criterion.c In file included from /usr/include/string.h:548, from /usr/include/python3.12/Python.h:26, from dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so.p/stopping_criterion.c:16: In function 'memcpy', inlined from '__pyx_f_4dipy_8tracking_18stopping_criterion___pyx_unpickle_StoppingCriterion__set_state' at dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so.p/stopping_criterion.c:29892:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:10: warning: '*(long unsigned int *)(&__pyx_t_1[0])' may be used uninitialized [-Wmaybe-uninitialized] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so.p/stopping_criterion.c: In function '__pyx_f_4dipy_8tracking_18stopping_criterion___pyx_unpickle_StoppingCriterion__set_state': dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so.p/stopping_criterion.c:29866:10: note: '*(long unsigned int *)(&__pyx_t_1[0])' was declared here 29866 | double __pyx_t_1[1]; | ^~~~~~~~~ [107/123] cc -o dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [108/123] cc -Idipy/reconst/recspeed.cpython-312-x86_64-linux-gnu.so.p -Idipy/reconst -I../dipy/reconst -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/reconst/recspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_recspeed.c.o -MF dipy/reconst/recspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_recspeed.c.o.d -o dipy/reconst/recspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_recspeed.c.o -c dipy/reconst/recspeed.cpython-312-x86_64-linux-gnu.so.p/recspeed.c [109/123] cc -o dipy/reconst/recspeed.cpython-312-x86_64-linux-gnu.so dipy/reconst/recspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_recspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [110/123] cc -Idipy/tracking/distances.cpython-312-x86_64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/tracking/distances.cpython-312-x86_64-linux-gnu.so.p/meson-generated_distances.c.o -MF dipy/tracking/distances.cpython-312-x86_64-linux-gnu.so.p/meson-generated_distances.c.o.d -o dipy/tracking/distances.cpython-312-x86_64-linux-gnu.so.p/meson-generated_distances.c.o -c dipy/tracking/distances.cpython-312-x86_64-linux-gnu.so.p/distances.c [111/123] cc -o dipy/tracking/distances.cpython-312-x86_64-linux-gnu.so dipy/tracking/distances.cpython-312-x86_64-linux-gnu.so.p/meson-generated_distances.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [112/123] cc -Idipy/align/parzenhist.cpython-312-x86_64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/align/parzenhist.cpython-312-x86_64-linux-gnu.so.p/meson-generated_parzenhist.c.o -MF dipy/align/parzenhist.cpython-312-x86_64-linux-gnu.so.p/meson-generated_parzenhist.c.o.d -o dipy/align/parzenhist.cpython-312-x86_64-linux-gnu.so.p/meson-generated_parzenhist.c.o -c dipy/align/parzenhist.cpython-312-x86_64-linux-gnu.so.p/parzenhist.c [113/123] cc -o dipy/align/parzenhist.cpython-312-x86_64-linux-gnu.so dipy/align/parzenhist.cpython-312-x86_64-linux-gnu.so.p/meson-generated_parzenhist.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [114/123] cc -Idipy/align/expectmax.cpython-312-x86_64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/align/expectmax.cpython-312-x86_64-linux-gnu.so.p/meson-generated_expectmax.c.o -MF dipy/align/expectmax.cpython-312-x86_64-linux-gnu.so.p/meson-generated_expectmax.c.o.d -o dipy/align/expectmax.cpython-312-x86_64-linux-gnu.so.p/meson-generated_expectmax.c.o -c dipy/align/expectmax.cpython-312-x86_64-linux-gnu.so.p/expectmax.c [115/123] cc -o dipy/align/expectmax.cpython-312-x86_64-linux-gnu.so dipy/align/expectmax.cpython-312-x86_64-linux-gnu.so.p/meson-generated_expectmax.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [116/123] cc -Idipy/align/crosscorr.cpython-312-x86_64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/align/crosscorr.cpython-312-x86_64-linux-gnu.so.p/meson-generated_crosscorr.c.o -MF dipy/align/crosscorr.cpython-312-x86_64-linux-gnu.so.p/meson-generated_crosscorr.c.o.d -o dipy/align/crosscorr.cpython-312-x86_64-linux-gnu.so.p/meson-generated_crosscorr.c.o -c dipy/align/crosscorr.cpython-312-x86_64-linux-gnu.so.p/crosscorr.c [117/123] cc -o dipy/align/crosscorr.cpython-312-x86_64-linux-gnu.so dipy/align/crosscorr.cpython-312-x86_64-linux-gnu.so.p/meson-generated_crosscorr.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [118/123] cc -Idipy/align/sumsqdiff.cpython-312-x86_64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/align/sumsqdiff.cpython-312-x86_64-linux-gnu.so.p/meson-generated_sumsqdiff.c.o -MF dipy/align/sumsqdiff.cpython-312-x86_64-linux-gnu.so.p/meson-generated_sumsqdiff.c.o.d -o dipy/align/sumsqdiff.cpython-312-x86_64-linux-gnu.so.p/meson-generated_sumsqdiff.c.o -c dipy/align/sumsqdiff.cpython-312-x86_64-linux-gnu.so.p/sumsqdiff.c [119/123] cc -o dipy/align/sumsqdiff.cpython-312-x86_64-linux-gnu.so dipy/align/sumsqdiff.cpython-312-x86_64-linux-gnu.so.p/meson-generated_sumsqdiff.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro 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/build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/viz_advanced.py [523/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/viz_bundles.py [524/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/viz_roi_contour.py [525/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/viz_slice.py [526/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/workflow_creation.py Successfully built dipy-1.9.0-cp312-cp312-linux_x86_64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module I: pybuild plugin_pyproject:129: Building wheel for python3.11 with "build" module I: pybuild base:311: python3.11 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy --config-setting compile-args=--verbose --config-setting setup-args=--wrap-mode=nodownload --config-setting setup-args=--prefix=/usr --config-setting setup-args=--sysconfdir=/etc --config-setting setup-args=--localstatedir=/var --config-setting setup-args=--libdir=lib/x86_64-linux-gnu * Building wheel... + meson setup /build/reproducible-path/dipy-1.9.0 /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9 -Dbuildtype=release -Db_ndebug=if-release -Db_vscrt=md --wrap-mode=nodownload --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/x86_64-linux-gnu --native-file=/build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/meson-python-native-file.ini The Meson build system Version: 1.4.1 Source dir: /build/reproducible-path/dipy-1.9.0 Build dir: /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9 Build type: native build Project name: dipy Project version: 1.9.0 C compiler for the host machine: cc (gcc 13.2.0 "cc (Debian 13.2.0-25) 13.2.0") C linker for the host machine: cc ld.bfd 2.42 C++ compiler for the host machine: c++ (gcc 13.2.0 "c++ (Debian 13.2.0-25) 13.2.0") C++ linker for the host machine: c++ ld.bfd 2.42 Cython compiler for the host machine: cython (cython 3.0.10) Host machine cpu family: x86_64 Host machine cpu: x86_64 Program python found: YES (/usr/bin/python3.11) Did not find pkg-config by name 'pkg-config' Found pkg-config: NO Run-time dependency python found: YES 3.11 Program cython found: YES (/usr/bin/cython) Library m found: YES Compiler for C supports arguments -Wno-maybe-uninitialized: YES Compiler for C supports arguments -Wno-discarded-qualifiers: YES Compiler for C supports arguments -Wno-empty-body: YES Compiler for C supports arguments -Wno-implicit-function-declaration: YES Compiler for C supports arguments -Wno-parentheses: YES Compiler for C supports arguments -Wno-switch: YES Compiler for C supports arguments -Wno-unused-label: YES Compiler for C supports arguments -Wno-unused-variable: YES Compiler for C++ supports arguments -Wno-cpp: YES Compiler for C++ supports arguments -Wno-deprecated-declarations: YES Compiler for C++ supports arguments -Wno-class-memaccess: YES Compiler for C++ supports arguments -Wno-format-truncation: YES Compiler for C++ supports arguments -Wno-format-extra-args: YES Compiler for C++ supports arguments -Wno-format: NO Compiler for C++ supports arguments -Wno-non-virtual-dtor: YES Compiler for C++ supports arguments -Wno-sign-compare: YES Compiler for C++ supports arguments -Wno-switch: YES Compiler for C++ supports arguments -Wno-terminate: YES Compiler for C++ supports arguments -Wno-unused-but-set-variable: YES Compiler for C++ supports arguments -Wno-unused-function: YES Compiler for C++ supports arguments -Wno-unused-local-typedefs: YES Compiler for C++ supports arguments -Wno-unused-variable: YES Compiler for C++ supports arguments -Wno-int-in-bool-context: YES Run-time dependency OpenMP found: YES 4.5 Checking if "SSE intrinsics" compiles: YES Checking if "compiler supports SSE4.1 intrinsics" : links: NO Checking if "compiler supports AVX intrinsics" : links: NO Checking if "ARM NEON intrinsics" compiles: NO Build targets in project: 45 dipy 1.9.0 User defined options Native files : /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/meson-python-native-file.ini buildtype : release libdir : lib/x86_64-linux-gnu localstatedir: /var prefix : /usr sysconfdir : /etc wrap_mode : nodownload b_ndebug : if-release b_vscrt : md Found ninja-1.12.1 at /usr/bin/ninja Generating targets: 0%| | 0/45 eta ? 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[2/123] /usr/bin/meson --internal copy ../dipy/../src/dpy_math.h dipy/dpy_math.h [3/123] /usr/bin/meson --internal copy ../dipy/../src/cythonutils.h dipy/cythonutils.h [4/123] /usr/bin/meson --internal copy ../dipy/../src/conditional_omp.h dipy/conditional_omp.h [5/123] /usr/bin/meson --internal copy ../dipy/__init__.py dipy/__init__.py [6/123] /usr/bin/meson --internal copy ../dipy/../src/safe_openmp.pxd dipy/safe_openmp.pxd [7/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/utils/omp.cpython-311-x86_64-linux-gnu.so.p/omp.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/utils/omp.pyx [8/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/utils/fast_numpy.cpython-311-x86_64-linux-gnu.so.p/fast_numpy.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/utils/fast_numpy.pyx [9/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/distances.cpython-311-x86_64-linux-gnu.so.p/distances.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/tracking/distances.pyx [10/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/reconst/quick_squash.cpython-311-x86_64-linux-gnu.so.p/quick_squash.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/reconst/quick_squash.pyx [11/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/cythonutils.cpython-311-x86_64-linux-gnu.so.p/cythonutils.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/segment/cythonutils.pyx [12/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/nlmeans_block.cpython-311-x86_64-linux-gnu.so.p/nlmeans_block.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/denoise/nlmeans_block.pyx [13/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/reconst/vec_val_sum.cpython-311-x86_64-linux-gnu.so.p/vec_val_sum.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/reconst/vec_val_sum.pyx [14/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/clustering_algorithms.cpython-311-x86_64-linux-gnu.so.p/clustering_algorithms.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/segment/clustering_algorithms.pyx [15/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/vox2track.cpython-311-x86_64-linux-gnu.so.p/vox2track.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/tracking/vox2track.pyx [16/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/shift_twist_convolution.cpython-311-x86_64-linux-gnu.so.p/shift_twist_convolution.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/denoise/shift_twist_convolution.pyx [17/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/pca_noise_estimate.cpython-311-x86_64-linux-gnu.so.p/pca_noise_estimate.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/denoise/pca_noise_estimate.pyx [18/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/enhancement_kernel.cpython-311-x86_64-linux-gnu.so.p/enhancement_kernel.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/denoise/enhancement_kernel.pyx [19/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/denspeed.cpython-311-x86_64-linux-gnu.so.p/denspeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/denoise/denspeed.pyx [20/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/propspeed.cpython-311-x86_64-linux-gnu.so.p/propspeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/tracking/propspeed.pyx [21/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/pmf.cpython-311-x86_64-linux-gnu.so.p/pmf.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/direction/pmf.pyx [22/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/fbcmeasures.cpython-311-x86_64-linux-gnu.so.p/fbcmeasures.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/tracking/fbcmeasures.pyx [23/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/metricspeed.cpython-311-x86_64-linux-gnu.so.p/metricspeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/segment/metricspeed.pyx [24/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/probabilistic_direction_getter.cpython-311-x86_64-linux-gnu.so.p/probabilistic_direction_getter.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/direction/probabilistic_direction_getter.pyx [25/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/mrf.cpython-311-x86_64-linux-gnu.so.p/mrf.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/segment/mrf.pyx [26/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/utils/tests/test_fast_numpy.cpython-311-x86_64-linux-gnu.so.p/test_fast_numpy.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/utils/tests/test_fast_numpy.pyx [27/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/streamlinespeed.cpython-311-x86_64-linux-gnu.so.p/streamlinespeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/tracking/streamlinespeed.pyx [28/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/bundlemin.cpython-311-x86_64-linux-gnu.so.p/bundlemin.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/align/bundlemin.pyx [29/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/featurespeed.cpython-311-x86_64-linux-gnu.so.p/featurespeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/segment/featurespeed.pyx [30/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/reconst/eudx_direction_getter.cpython-311-x86_64-linux-gnu.so.p/eudx_direction_getter.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/reconst/eudx_direction_getter.pyx [31/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/localtrack.cpython-311-x86_64-linux-gnu.so.p/localtrack.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/tracking/localtrack.pyx [32/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/direction_getter.cpython-311-x86_64-linux-gnu.so.p/direction_getter.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/tracking/direction_getter.pyx [33/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/stopping_criterion.cpython-311-x86_64-linux-gnu.so.p/stopping_criterion.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/tracking/stopping_criterion.pyx [34/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/reconst/recspeed.cpython-311-x86_64-linux-gnu.so.p/recspeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/reconst/recspeed.pyx [35/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/bootstrap_direction_getter.cpython-311-x86_64-linux-gnu.so.p/bootstrap_direction_getter.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/direction/bootstrap_direction_getter.pyx [36/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/clusteringspeed.cpython-311-x86_64-linux-gnu.so.p/clusteringspeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/segment/clusteringspeed.pyx [37/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/ptt_direction_getter.cpython-311-x86_64-linux-gnu.so.p/ptt_direction_getter.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/direction/ptt_direction_getter.pyx [38/123] cc -Idipy/utils/fast_numpy.cpython-311-x86_64-linux-gnu.so.p -Idipy/utils -I../dipy/utils -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.11 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/utils/fast_numpy.cpython-311-x86_64-linux-gnu.so.p/meson-generated_fast_numpy.c.o -MF dipy/utils/fast_numpy.cpython-311-x86_64-linux-gnu.so.p/meson-generated_fast_numpy.c.o.d -o dipy/utils/fast_numpy.cpython-311-x86_64-linux-gnu.so.p/meson-generated_fast_numpy.c.o -c dipy/utils/fast_numpy.cpython-311-x86_64-linux-gnu.so.p/fast_numpy.c [39/123] cc -o dipy/utils/fast_numpy.cpython-311-x86_64-linux-gnu.so dipy/utils/fast_numpy.cpython-311-x86_64-linux-gnu.so.p/meson-generated_fast_numpy.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [40/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/closest_peak_direction_getter.cpython-311-x86_64-linux-gnu.so.p/closest_peak_direction_getter.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/direction/closest_peak_direction_getter.pyx [41/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/transforms.cpython-311-x86_64-linux-gnu.so.p/transforms.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/align/transforms.pyx [42/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/parzenhist.cpython-311-x86_64-linux-gnu.so.p/parzenhist.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/align/parzenhist.pyx [43/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/expectmax.cpython-311-x86_64-linux-gnu.so.p/expectmax.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/align/expectmax.pyx [44/123] cc -Idipy/utils/omp.cpython-311-x86_64-linux-gnu.so.p -Idipy/utils -I../dipy/utils -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.11 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/utils/omp.cpython-311-x86_64-linux-gnu.so.p/meson-generated_omp.c.o -MF dipy/utils/omp.cpython-311-x86_64-linux-gnu.so.p/meson-generated_omp.c.o.d -o dipy/utils/omp.cpython-311-x86_64-linux-gnu.so.p/meson-generated_omp.c.o -c dipy/utils/omp.cpython-311-x86_64-linux-gnu.so.p/omp.c [45/123] cc -o dipy/utils/omp.cpython-311-x86_64-linux-gnu.so dipy/utils/omp.cpython-311-x86_64-linux-gnu.so.p/meson-generated_omp.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [46/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/crosscorr.cpython-311-x86_64-linux-gnu.so.p/crosscorr.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/align/crosscorr.pyx [47/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/core/interpolation.cpython-311-x86_64-linux-gnu.so.p/interpolation.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/core/interpolation.pyx [48/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/sumsqdiff.cpython-311-x86_64-linux-gnu.so.p/sumsqdiff.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/align/sumsqdiff.pyx [49/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/vector_fields.cpython-311-x86_64-linux-gnu.so.p/vector_fields.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-7nzh9kc9/dipy ../dipy/align/vector_fields.pyx [50/123] cc -Idipy/segment/cythonutils.cpython-311-x86_64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.11 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp 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dipy/reconst/quick_squash.cpython-311-x86_64-linux-gnu.so.p/meson-generated_quick_squash.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [54/123] cc -Idipy/reconst/eudx_direction_getter.cpython-311-x86_64-linux-gnu.so.p -Idipy/reconst -I../dipy/reconst -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.11 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/reconst/eudx_direction_getter.cpython-311-x86_64-linux-gnu.so.p/meson-generated_eudx_direction_getter.c.o -MF dipy/reconst/eudx_direction_getter.cpython-311-x86_64-linux-gnu.so.p/meson-generated_eudx_direction_getter.c.o.d -o dipy/reconst/eudx_direction_getter.cpython-311-x86_64-linux-gnu.so.p/meson-generated_eudx_direction_getter.c.o -c dipy/reconst/eudx_direction_getter.cpython-311-x86_64-linux-gnu.so.p/eudx_direction_getter.c [55/123] cc -o dipy/reconst/eudx_direction_getter.cpython-311-x86_64-linux-gnu.so dipy/reconst/eudx_direction_getter.cpython-311-x86_64-linux-gnu.so.p/meson-generated_eudx_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [56/123] cc -Idipy/direction/probabilistic_direction_getter.cpython-311-x86_64-linux-gnu.so.p -Idipy/direction -I../dipy/direction -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.11 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/direction/probabilistic_direction_getter.cpython-311-x86_64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o -MF dipy/direction/probabilistic_direction_getter.cpython-311-x86_64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o.d -o dipy/direction/probabilistic_direction_getter.cpython-311-x86_64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o -c dipy/direction/probabilistic_direction_getter.cpython-311-x86_64-linux-gnu.so.p/probabilistic_direction_getter.c [57/123] cc -Idipy/tracking/propspeed.cpython-311-x86_64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.11 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/tracking/propspeed.cpython-311-x86_64-linux-gnu.so.p/meson-generated_propspeed.c.o -MF 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dipy/reconst/vec_val_sum.cpython-311-x86_64-linux-gnu.so.p/meson-generated_vec_val_sum.c.o.d -o dipy/reconst/vec_val_sum.cpython-311-x86_64-linux-gnu.so.p/meson-generated_vec_val_sum.c.o -c dipy/reconst/vec_val_sum.cpython-311-x86_64-linux-gnu.so.p/vec_val_sum.c [59/123] cc -o dipy/direction/probabilistic_direction_getter.cpython-311-x86_64-linux-gnu.so dipy/direction/probabilistic_direction_getter.cpython-311-x86_64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [60/123] cc -o dipy/reconst/vec_val_sum.cpython-311-x86_64-linux-gnu.so dipy/reconst/vec_val_sum.cpython-311-x86_64-linux-gnu.so.p/meson-generated_vec_val_sum.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [61/123] cc -o dipy/tracking/propspeed.cpython-311-x86_64-linux-gnu.so dipy/tracking/propspeed.cpython-311-x86_64-linux-gnu.so.p/meson-generated_propspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [62/123] cc -Idipy/denoise/shift_twist_convolution.cpython-311-x86_64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.11 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/denoise/shift_twist_convolution.cpython-311-x86_64-linux-gnu.so.p/meson-generated_shift_twist_convolution.c.o -MF dipy/denoise/shift_twist_convolution.cpython-311-x86_64-linux-gnu.so.p/meson-generated_shift_twist_convolution.c.o.d -o dipy/denoise/shift_twist_convolution.cpython-311-x86_64-linux-gnu.so.p/meson-generated_shift_twist_convolution.c.o -c dipy/denoise/shift_twist_convolution.cpython-311-x86_64-linux-gnu.so.p/shift_twist_convolution.c [63/123] cc -o dipy/denoise/shift_twist_convolution.cpython-311-x86_64-linux-gnu.so 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-fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/segment/clustering_algorithms.cpython-311-x86_64-linux-gnu.so.p/meson-generated_clustering_algorithms.c.o -MF dipy/segment/clustering_algorithms.cpython-311-x86_64-linux-gnu.so.p/meson-generated_clustering_algorithms.c.o.d -o dipy/segment/clustering_algorithms.cpython-311-x86_64-linux-gnu.so.p/meson-generated_clustering_algorithms.c.o -c dipy/segment/clustering_algorithms.cpython-311-x86_64-linux-gnu.so.p/clustering_algorithms.c [65/123] cc -Idipy/denoise/denspeed.cpython-311-x86_64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.11 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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dipy/utils/tests/test_fast_numpy.cpython-311-x86_64-linux-gnu.so.p/meson-generated_test_fast_numpy.c.o -MF dipy/utils/tests/test_fast_numpy.cpython-311-x86_64-linux-gnu.so.p/meson-generated_test_fast_numpy.c.o.d -o dipy/utils/tests/test_fast_numpy.cpython-311-x86_64-linux-gnu.so.p/meson-generated_test_fast_numpy.c.o -c dipy/utils/tests/test_fast_numpy.cpython-311-x86_64-linux-gnu.so.p/test_fast_numpy.c [70/123] cc -Idipy/tracking/direction_getter.cpython-311-x86_64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.11 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse 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dipy/utils/tests/test_fast_numpy.cpython-311-x86_64-linux-gnu.so.p/meson-generated_test_fast_numpy.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [73/123] cc -o dipy/segment/clustering_algorithms.cpython-311-x86_64-linux-gnu.so dipy/segment/clustering_algorithms.cpython-311-x86_64-linux-gnu.so.p/meson-generated_clustering_algorithms.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [74/123] cc -o dipy/tracking/localtrack.cpython-311-x86_64-linux-gnu.so dipy/tracking/localtrack.cpython-311-x86_64-linux-gnu.so.p/meson-generated_localtrack.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [75/123] cc -o dipy/tracking/direction_getter.cpython-311-x86_64-linux-gnu.so dipy/tracking/direction_getter.cpython-311-x86_64-linux-gnu.so.p/meson-generated_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [76/123] cc -o dipy/denoise/denspeed.cpython-311-x86_64-linux-gnu.so dipy/denoise/denspeed.cpython-311-x86_64-linux-gnu.so.p/meson-generated_denspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [77/123] cc -o dipy/align/bundlemin.cpython-311-x86_64-linux-gnu.so dipy/align/bundlemin.cpython-311-x86_64-linux-gnu.so.p/meson-generated_bundlemin.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [78/123] cc -Idipy/denoise/pca_noise_estimate.cpython-311-x86_64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.11 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/denoise/pca_noise_estimate.cpython-311-x86_64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o -MF dipy/denoise/pca_noise_estimate.cpython-311-x86_64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o.d -o dipy/denoise/pca_noise_estimate.cpython-311-x86_64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o -c 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dipy/direction/ptt_direction_getter.cpython-311-x86_64-linux-gnu.so.p/meson-generated_ptt_direction_getter.c.o -c dipy/direction/ptt_direction_getter.cpython-311-x86_64-linux-gnu.so.p/ptt_direction_getter.c [88/123] cc -Idipy/denoise/enhancement_kernel.cpython-311-x86_64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.11 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/denoise/enhancement_kernel.cpython-311-x86_64-linux-gnu.so.p/meson-generated_enhancement_kernel.c.o -MF 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-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/segment/mrf.cpython-311-x86_64-linux-gnu.so.p/meson-generated_mrf.c.o -MF dipy/segment/mrf.cpython-311-x86_64-linux-gnu.so.p/meson-generated_mrf.c.o.d -o dipy/segment/mrf.cpython-311-x86_64-linux-gnu.so.p/meson-generated_mrf.c.o -c dipy/segment/mrf.cpython-311-x86_64-linux-gnu.so.p/mrf.c [91/123] cc -Idipy/direction/bootstrap_direction_getter.cpython-311-x86_64-linux-gnu.so.p -Idipy/direction -I../dipy/direction -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.11 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/direction/bootstrap_direction_getter.cpython-311-x86_64-linux-gnu.so.p/meson-generated_bootstrap_direction_getter.c.o -MF dipy/direction/bootstrap_direction_getter.cpython-311-x86_64-linux-gnu.so.p/meson-generated_bootstrap_direction_getter.c.o.d -o dipy/direction/bootstrap_direction_getter.cpython-311-x86_64-linux-gnu.so.p/meson-generated_bootstrap_direction_getter.c.o -c dipy/direction/bootstrap_direction_getter.cpython-311-x86_64-linux-gnu.so.p/bootstrap_direction_getter.c [92/123] cc -o dipy/segment/clusteringspeed.cpython-311-x86_64-linux-gnu.so dipy/segment/clusteringspeed.cpython-311-x86_64-linux-gnu.so.p/meson-generated_clusteringspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [93/123] cc -o dipy/direction/closest_peak_direction_getter.cpython-311-x86_64-linux-gnu.so dipy/direction/closest_peak_direction_getter.cpython-311-x86_64-linux-gnu.so.p/meson-generated_closest_peak_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [94/123] cc -o dipy/direction/ptt_direction_getter.cpython-311-x86_64-linux-gnu.so dipy/direction/ptt_direction_getter.cpython-311-x86_64-linux-gnu.so.p/meson-generated_ptt_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [95/123] cc -o dipy/denoise/enhancement_kernel.cpython-311-x86_64-linux-gnu.so dipy/denoise/enhancement_kernel.cpython-311-x86_64-linux-gnu.so.p/meson-generated_enhancement_kernel.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [96/123] cc -o dipy/segment/mrf.cpython-311-x86_64-linux-gnu.so dipy/segment/mrf.cpython-311-x86_64-linux-gnu.so.p/meson-generated_mrf.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [97/123] cc -o dipy/direction/bootstrap_direction_getter.cpython-311-x86_64-linux-gnu.so dipy/direction/bootstrap_direction_getter.cpython-311-x86_64-linux-gnu.so.p/meson-generated_bootstrap_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [98/123] cc -Idipy/tracking/fbcmeasures.cpython-311-x86_64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.11 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/tracking/fbcmeasures.cpython-311-x86_64-linux-gnu.so.p/meson-generated_fbcmeasures.c.o -MF dipy/tracking/fbcmeasures.cpython-311-x86_64-linux-gnu.so.p/meson-generated_fbcmeasures.c.o.d -o dipy/tracking/fbcmeasures.cpython-311-x86_64-linux-gnu.so.p/meson-generated_fbcmeasures.c.o -c dipy/tracking/fbcmeasures.cpython-311-x86_64-linux-gnu.so.p/fbcmeasures.c [99/123] cc -o dipy/tracking/fbcmeasures.cpython-311-x86_64-linux-gnu.so dipy/tracking/fbcmeasures.cpython-311-x86_64-linux-gnu.so.p/meson-generated_fbcmeasures.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [100/123] cc -Idipy/align/transforms.cpython-311-x86_64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.11 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/align/transforms.cpython-311-x86_64-linux-gnu.so.p/meson-generated_transforms.c.o -MF dipy/align/transforms.cpython-311-x86_64-linux-gnu.so.p/meson-generated_transforms.c.o.d -o dipy/align/transforms.cpython-311-x86_64-linux-gnu.so.p/meson-generated_transforms.c.o -c dipy/align/transforms.cpython-311-x86_64-linux-gnu.so.p/transforms.c [101/123] cc -Idipy/tracking/stopping_criterion.cpython-311-x86_64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.11 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/tracking/stopping_criterion.cpython-311-x86_64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o -MF dipy/tracking/stopping_criterion.cpython-311-x86_64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o.d -o dipy/tracking/stopping_criterion.cpython-311-x86_64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o -c dipy/tracking/stopping_criterion.cpython-311-x86_64-linux-gnu.so.p/stopping_criterion.c In file included from /usr/include/string.h:548, from /usr/include/python3.11/Python.h:26, from dipy/tracking/stopping_criterion.cpython-311-x86_64-linux-gnu.so.p/stopping_criterion.c:16: In function 'memcpy', inlined from '__pyx_f_4dipy_8tracking_18stopping_criterion___pyx_unpickle_StoppingCriterion__set_state' at dipy/tracking/stopping_criterion.cpython-311-x86_64-linux-gnu.so.p/stopping_criterion.c:29892:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:10: warning: '*(long unsigned int *)(&__pyx_t_1[0])' may be used uninitialized [-Wmaybe-uninitialized] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ dipy/tracking/stopping_criterion.cpython-311-x86_64-linux-gnu.so.p/stopping_criterion.c: In function '__pyx_f_4dipy_8tracking_18stopping_criterion___pyx_unpickle_StoppingCriterion__set_state': dipy/tracking/stopping_criterion.cpython-311-x86_64-linux-gnu.so.p/stopping_criterion.c:29866:10: note: '*(long unsigned int *)(&__pyx_t_1[0])' was declared here 29866 | double __pyx_t_1[1]; | ^~~~~~~~~ [102/123] cc -o dipy/align/transforms.cpython-311-x86_64-linux-gnu.so dipy/align/transforms.cpython-311-x86_64-linux-gnu.so.p/meson-generated_transforms.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [103/123] cc -o dipy/tracking/stopping_criterion.cpython-311-x86_64-linux-gnu.so dipy/tracking/stopping_criterion.cpython-311-x86_64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [104/123] cc -Idipy/segment/featurespeed.cpython-311-x86_64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.11 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/segment/featurespeed.cpython-311-x86_64-linux-gnu.so.p/meson-generated_featurespeed.c.o -MF dipy/segment/featurespeed.cpython-311-x86_64-linux-gnu.so.p/meson-generated_featurespeed.c.o.d -o dipy/segment/featurespeed.cpython-311-x86_64-linux-gnu.so.p/meson-generated_featurespeed.c.o -c dipy/segment/featurespeed.cpython-311-x86_64-linux-gnu.so.p/featurespeed.c [105/123] cc -o dipy/segment/featurespeed.cpython-311-x86_64-linux-gnu.so dipy/segment/featurespeed.cpython-311-x86_64-linux-gnu.so.p/meson-generated_featurespeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [106/123] cc -Idipy/tracking/distances.cpython-311-x86_64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.11 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/tracking/distances.cpython-311-x86_64-linux-gnu.so.p/meson-generated_distances.c.o -MF dipy/tracking/distances.cpython-311-x86_64-linux-gnu.so.p/meson-generated_distances.c.o.d -o dipy/tracking/distances.cpython-311-x86_64-linux-gnu.so.p/meson-generated_distances.c.o -c dipy/tracking/distances.cpython-311-x86_64-linux-gnu.so.p/distances.c [107/123] cc -o dipy/tracking/distances.cpython-311-x86_64-linux-gnu.so dipy/tracking/distances.cpython-311-x86_64-linux-gnu.so.p/meson-generated_distances.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [108/123] cc -Idipy/segment/metricspeed.cpython-311-x86_64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.11 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/segment/metricspeed.cpython-311-x86_64-linux-gnu.so.p/meson-generated_metricspeed.c.o -MF dipy/segment/metricspeed.cpython-311-x86_64-linux-gnu.so.p/meson-generated_metricspeed.c.o.d -o dipy/segment/metricspeed.cpython-311-x86_64-linux-gnu.so.p/meson-generated_metricspeed.c.o -c dipy/segment/metricspeed.cpython-311-x86_64-linux-gnu.so.p/metricspeed.c [109/123] cc -o dipy/segment/metricspeed.cpython-311-x86_64-linux-gnu.so dipy/segment/metricspeed.cpython-311-x86_64-linux-gnu.so.p/meson-generated_metricspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [110/123] cc -Idipy/reconst/recspeed.cpython-311-x86_64-linux-gnu.so.p -Idipy/reconst -I../dipy/reconst -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.11 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/reconst/recspeed.cpython-311-x86_64-linux-gnu.so.p/meson-generated_recspeed.c.o -MF dipy/reconst/recspeed.cpython-311-x86_64-linux-gnu.so.p/meson-generated_recspeed.c.o.d -o dipy/reconst/recspeed.cpython-311-x86_64-linux-gnu.so.p/meson-generated_recspeed.c.o -c dipy/reconst/recspeed.cpython-311-x86_64-linux-gnu.so.p/recspeed.c [111/123] cc -o dipy/reconst/recspeed.cpython-311-x86_64-linux-gnu.so dipy/reconst/recspeed.cpython-311-x86_64-linux-gnu.so.p/meson-generated_recspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [112/123] cc -Idipy/align/parzenhist.cpython-311-x86_64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.11 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/align/parzenhist.cpython-311-x86_64-linux-gnu.so.p/meson-generated_parzenhist.c.o -MF dipy/align/parzenhist.cpython-311-x86_64-linux-gnu.so.p/meson-generated_parzenhist.c.o.d -o dipy/align/parzenhist.cpython-311-x86_64-linux-gnu.so.p/meson-generated_parzenhist.c.o -c dipy/align/parzenhist.cpython-311-x86_64-linux-gnu.so.p/parzenhist.c [113/123] cc -o dipy/align/parzenhist.cpython-311-x86_64-linux-gnu.so dipy/align/parzenhist.cpython-311-x86_64-linux-gnu.so.p/meson-generated_parzenhist.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [114/123] cc -Idipy/align/expectmax.cpython-311-x86_64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.11 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/align/expectmax.cpython-311-x86_64-linux-gnu.so.p/meson-generated_expectmax.c.o -MF dipy/align/expectmax.cpython-311-x86_64-linux-gnu.so.p/meson-generated_expectmax.c.o.d -o dipy/align/expectmax.cpython-311-x86_64-linux-gnu.so.p/meson-generated_expectmax.c.o -c dipy/align/expectmax.cpython-311-x86_64-linux-gnu.so.p/expectmax.c [115/123] cc -o dipy/align/expectmax.cpython-311-x86_64-linux-gnu.so dipy/align/expectmax.cpython-311-x86_64-linux-gnu.so.p/meson-generated_expectmax.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [116/123] cc -Idipy/align/sumsqdiff.cpython-311-x86_64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.11 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/align/sumsqdiff.cpython-311-x86_64-linux-gnu.so.p/meson-generated_sumsqdiff.c.o -MF 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/build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_bootstrap_peaks.py [514/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_deterministic.py [515/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_introduction_eudx.py [516/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_pft.py [517/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_probabilistic.py [518/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_ptt.py [519/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_rumba.py [520/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_sfm.py [521/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_stopping_criterion.py [522/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/viz_advanced.py [523/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/viz_bundles.py [524/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/viz_roi_contour.py [525/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/viz_slice.py [526/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/workflow_creation.py Successfully built dipy-1.9.0-cp311-cp311-linux_x86_64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.11 with "installer" module find -name func_coef.nii.gz -print -exec chmod 0644 '{}' ';' ./.pybuild/cpython3_3.12_dipy/build/dipy/data/files/func_coef.nii.gz ./.pybuild/cpython3_3.11_dipy/build/dipy/data/files/func_coef.nii.gz ./dipy/data/files/func_coef.nii.gz make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' # Do not test just after build, lets install and then test make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir I: pybuild plugin_pyproject:178: Copying package built for python3.11 to destdir debian/rules execute_after_dh_auto_install make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' py3versions: no X-Python3-Version in control file, using supported versions # Prune duplicate LICENSE file find debian/ -name LICENSE -delete # Only now lets build docs cd doc/ \ && PYTHONPATH=/build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build \ /usr/bin/make html SPHINXOPTS="-D today=\"May 22, 2024\"" make[2]: Entering directory '/build/reproducible-path/dipy-1.9.0/doc' tools/build_modref_templates.py dipy reference /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/viz/__init__.py:22: UserWarning: You do not have FURY installed. Therefore, 3D visualization functions will not work for you. Please install or upgrade FURY using pip install -U furyFor detailed installation instructions visit: https://fury.gl/ warnings.warn( WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos Generating docs for dipy: -> dipy Generating docs for dipy.align: -> dipy.align -> dipy.align._public /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/_public.py 718 -> dipy.align.cpd -> dipy.align.imaffine -> dipy.align.imwarp -> dipy.align.metrics -> dipy.align.reslice -> dipy.align.scalespace -> dipy.align.streamlinear -> dipy.align.streamwarp Generating docs for dipy.core: -> dipy.core WARNING: Empty - dipy.core -> dipy.core.geometry -> dipy.core.gradients -> dipy.core.graph -> dipy.core.histeq -> dipy.core.ndindex -> dipy.core.onetime -> dipy.core.optimize -> dipy.core.profile -> dipy.core.rng -> dipy.core.sphere -> dipy.core.sphere_stats -> dipy.core.subdivide_octahedron -> dipy.core.wavelet Generating docs for dipy.data: -> dipy.data -> dipy.data.fetcher Generating docs for dipy.denoise: -> dipy.denoise WARNING: Empty - dipy.denoise -> dipy.denoise.adaptive_soft_matching -> dipy.denoise.gibbs -> dipy.denoise.localpca -> dipy.denoise.nlmeans -> dipy.denoise.noise_estimate -> dipy.denoise.non_local_means -> dipy.denoise.patch2self Generating docs for dipy.direction: -> dipy.direction WARNING: Empty - dipy.direction -> dipy.direction.peaks Generating docs for dipy.io: -> dipy.io WARNING: Empty - dipy.io -> dipy.io.dpy -> dipy.io.gradients -> dipy.io.image -> dipy.io.peaks -> dipy.io.pickles -> dipy.io.stateful_tractogram -> dipy.io.streamline -> dipy.io.surface -> dipy.io.utils -> dipy.io.vtk Generating docs for dipy.nn: -> dipy.nn WARNING: Empty - dipy.nn -> dipy.nn.cnn_1d_denoising -> dipy.nn.deepn4 -> dipy.nn.evac -> dipy.nn.histo_resdnn -> dipy.nn.model -> dipy.nn.synb0 -> dipy.nn.utils Generating docs for dipy.reconst: -> dipy.reconst WARNING: Empty - dipy.reconst -> dipy.reconst.base -> dipy.reconst.cache -> dipy.reconst.cross_validation -> dipy.reconst.csdeconv -> dipy.reconst.cti -> dipy.reconst.dki -> dipy.reconst.dki_micro -> dipy.reconst.dsi -> dipy.reconst.dti -> dipy.reconst.forecast -> dipy.reconst.fwdti -> dipy.reconst.gqi -> dipy.reconst.ivim -> dipy.reconst.mapmri -> dipy.reconst.mcsd -> dipy.reconst.msdki -> dipy.reconst.multi_voxel -> dipy.reconst.odf -> dipy.reconst.qtdmri -> dipy.reconst.qti -> dipy.reconst.rumba -> dipy.reconst.sfm -> dipy.reconst.shm -> dipy.reconst.shore -> dipy.reconst.utils Generating docs for dipy.segment: -> dipy.segment WARNING: Empty - dipy.segment -> dipy.segment.bundles -> dipy.segment.clustering -> dipy.segment.fss -> dipy.segment.mask -> dipy.segment.metric -> dipy.segment.threshold -> dipy.segment.tissue Generating docs for dipy.sims: -> dipy.sims WARNING: Empty - dipy.sims -> dipy.sims.phantom -> dipy.sims.voxel Generating docs for dipy.stats: -> dipy.stats WARNING: Empty - dipy.stats -> dipy.stats.analysis Generating docs for dipy.tracking: -> dipy.tracking WARNING: Empty - dipy.tracking -> dipy.tracking._utils WARNING: Empty - dipy.tracking._utils -> dipy.tracking.learning -> dipy.tracking.life -> dipy.tracking.local_tracking -> dipy.tracking.mesh -> dipy.tracking.metrics -> dipy.tracking.streamline -> dipy.tracking.utils Generating docs for dipy.version: -> dipy.version WARNING: Empty - dipy.version Generating docs for dipy.viz: -> dipy.viz WARNING: Empty - dipy.viz -> dipy.viz.gmem -> dipy.viz.horizon WARNING: Empty - dipy.viz.horizon -> dipy.viz.horizon.app -> dipy.viz.horizon.tab WARNING: Empty - dipy.viz.horizon.tab -> dipy.viz.horizon.tab.base -> dipy.viz.horizon.tab.cluster -> dipy.viz.horizon.tab.peak -> dipy.viz.horizon.tab.roi -> dipy.viz.horizon.tab.slice -> dipy.viz.horizon.tab.surface -> dipy.viz.horizon.util -> dipy.viz.horizon.visualizer WARNING: Empty - dipy.viz.horizon.visualizer -> dipy.viz.horizon.visualizer.cluster -> dipy.viz.horizon.visualizer.peak -> dipy.viz.horizon.visualizer.slice -> dipy.viz.horizon.visualizer.surface -> dipy.viz.panel -> dipy.viz.plotting -> dipy.viz.projections -> dipy.viz.regtools -> dipy.viz.streamline Generating docs for dipy.workflows: -> dipy.workflows WARNING: Empty - dipy.workflows -> dipy.workflows.align -> dipy.workflows.base -> dipy.workflows.cli -> dipy.workflows.combined_workflow -> dipy.workflows.denoise -> dipy.workflows.docstring_parser -> dipy.workflows.flow_runner -> dipy.workflows.io -> dipy.workflows.mask -> dipy.workflows.multi_io -> dipy.workflows.nn -> dipy.workflows.reconst -> dipy.workflows.segment -> dipy.workflows.stats -> dipy.workflows.tracking -> dipy.workflows.viz -> dipy.workflows.workflow 16 files written tools/docgen_cmd.py dipy reference_cmd WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/viz/__init__.py:22: UserWarning: You do not have FURY installed. Therefore, 3D visualization functions will not work for you. Please install or upgrade FURY using pip install -U furyFor detailed installation instructions visit: https://fury.gl/ warnings.warn( Generating docs for: dipy_align_affine (ImageRegistrationFlow) Done Generating docs for: dipy_align_syn (SynRegistrationFlow) Done Generating docs for: dipy_apply_transform (ApplyTransformFlow) Done Generating docs for: dipy_buan_lmm (LinearMixedModelsFlow) Done Generating docs for: dipy_buan_shapes (BundleShapeAnalysis) Done Generating docs for: dipy_buan_profiles (BundleAnalysisTractometryFlow) Done Generating docs for: dipy_bundlewarp (BundleWarpFlow) Done Generating docs for: dipy_correct_motion (MotionCorrectionFlow) Done Generating docs for: dipy_convert_tractogram (ConvertTractogramFlow) Done Generating docs for: dipy_convert_tensors (ConvertTensorsFlow) Done Generating docs for: dipy_denoise_nlmeans (NLMeansFlow) Done Generating docs for: dipy_denoise_lpca (LPCAFlow) Done Generating docs for: dipy_denoise_mppca (MPPCAFlow) Done Generating docs for: dipy_denoise_patch2self (Patch2SelfFlow) Done Generating docs for: dipy_evac_plus (EVACPlusFlow) Done Generating docs for: dipy_fetch (FetchFlow) Done Generating docs for: dipy_fit_csa (ReconstCSAFlow) Done Generating docs for: dipy_fit_csd (ReconstCSDFlow) Done Generating docs for: dipy_fit_dki (ReconstDkiFlow) Done Generating docs for: dipy_fit_dti (ReconstDtiFlow) Done Generating docs for: dipy_fit_dsi (ReconstDsiFlow) Done Generating docs for: dipy_fit_ivim (ReconstIvimFlow) Done Generating docs for: dipy_fit_mapmri (ReconstMAPMRIFlow) Done Generating docs for: dipy_mask (MaskFlow) Done Generating docs for: dipy_gibbs_ringing (GibbsRingingFlow) Done Generating docs for: dipy_horizon (HorizonFlow) Done Generating docs for: dipy_info (IoInfoFlow) Done Generating docs for: dipy_concatenate_tractograms (ConcatenateTractogramFlow) Done Generating docs for: dipy_labelsbundles (LabelsBundlesFlow) Done Generating docs for: dipy_median_otsu (MedianOtsuFlow) Done Generating docs for: dipy_recobundles (RecoBundlesFlow) Done Generating docs for: dipy_reslice (ResliceFlow) Done Generating docs for: dipy_sh_convert_mrtrix (ConvertSHFlow) Done Generating docs for: dipy_snr_in_cc (SNRinCCFlow) Done Generating docs for: dipy_split (SplitFlow) Done Generating docs for: dipy_track (LocalFiberTrackingPAMFlow) Done Generating docs for: dipy_track_pft (PFTrackingPAMFlow) Done Generating docs for: dipy_slr (SlrWithQbxFlow) Done Generating index.rst Done Build API docs...done. # Standard html build after examples have been prepared sphinx-build -b html -d _build/doctrees -D today="May 22, 2024" . _build/html Running Sphinx v7.2.6 Initializing Examples folder revamp plugin... Initializing GitHub plugin making output directory... done [autosummary] generating autosummary for: api_changes.rst, cite.rst, devel/benchmarking.rst, devel/coding_style_guideline.rst, devel/commit_codes.rst, devel/gitwash/configure_git.rst, devel/gitwash/development_workflow.rst, devel/gitwash/dot2_dot3.rst, devel/gitwash/following_latest.rst, devel/gitwash/forking_hell.rst, ..., theory/sh_basis.rst, theory/spherical.rst, user_guide/data.rst, user_guide/dataset_list.rst, user_guide/dependencies.rst, user_guide/getting_started.rst, user_guide/index.rst, user_guide/installation.rst, user_guide/introduction.rst, user_guide/mission.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/viz/__init__.py:22: UserWarning: You do not have FURY installed. Therefore, 3D visualization functions will not work for you. Please install or upgrade FURY using pip install -U furyFor detailed installation instructions visit: https://fury.gl/ warnings.warn( WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 138 source files that are out of date updating environment: [new config] 138 added, 0 changed, 0 removed reading sources... [ 1%] api_changes reading sources... [ 1%] cite reading sources... [ 2%] devel/benchmarking reading sources... [ 3%] devel/coding_style_guideline reading sources... [ 4%] devel/commit_codes reading sources... [ 4%] devel/gitwash/configure_git reading sources... [ 5%] devel/gitwash/development_workflow reading sources... [ 6%] devel/gitwash/dot2_dot3 reading sources... [ 7%] devel/gitwash/following_latest reading sources... [ 7%] devel/gitwash/forking_hell reading sources... [ 8%] devel/gitwash/git_development reading sources... [ 9%] devel/gitwash/git_install reading sources... [ 9%] devel/gitwash/git_intro reading sources... 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See "backrefs" attribute for IDs. links_names.inc:80: WARNING: Duplicate explicit target name: "cython". /build/reproducible-path/dipy-1.9.0/doc/devel/make_release.rst:123: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/doc/devel/toolchain.rst:39: WARNING: Mismatch: both interpreted text role prefix and reference suffix. /build/reproducible-path/dipy-1.9.0/doc/gimbal_lock.rst:27: WARNING: image file not readable: images/spitfire_0.png /build/reproducible-path/dipy-1.9.0/doc/gimbal_lock.rst:32: WARNING: image file not readable: images/spitfire_x.png /build/reproducible-path/dipy-1.9.0/doc/gimbal_lock.rst:37: WARNING: image file not readable: images/spitfire_y.png /build/reproducible-path/dipy-1.9.0/doc/gimbal_lock.rst:42: WARNING: image file not readable: images/spitfire_hoped.png /build/reproducible-path/dipy-1.9.0/doc/index.rst:99: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/index.rst:119: WARNING: toctree contains reference to nonexisting document 'examples_built/index' /build/reproducible-path/dipy-1.9.0/doc/interfaces/buan_flow.rst:290: WARNING: duplicate citation Garyfallidis14, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/basic_flow.rst /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundle_segmentation_flow.rst:118: WARNING: duplicate citation Yeh18, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/buan_flow.rst /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundle_segmentation_flow.rst:128: WARNING: duplicate citation Garyfallidis14, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/buan_flow.rst /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundlewarp_registration_flow.rst:52: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundlewarp_registration_flow.rst:113: WARNING: duplicate citation Garyfallidis14, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundle_segmentation_flow.rst /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:62: ERROR: Error in "image" directive: no content permitted. image:: https://github.com/dipy/dipy_data/blob/master/stanford_hardi_original.png?raw=true :align: middle /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:62: WARNING: Substitution definition "image1" empty or invalid. .. |image1| image:: https://github.com/dipy/dipy_data/blob/master/stanford_hardi_original.png?raw=true :align: middle /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:65: ERROR: Error in "image" directive: no content permitted. image:: https://github.com/dipy/dipy_data/blob/master/stanford_hardi_denoise_LPCA.png?raw=true :align: middle /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:65: WARNING: Substitution definition "image2" empty or invalid. .. |image2| image:: https://github.com/dipy/dipy_data/blob/master/stanford_hardi_denoise_LPCA.png?raw=true :align: middle /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:142: WARNING: Literal block expected; none found. /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:72: ERROR: Undefined substitution referenced: "image1". /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:72: ERROR: Undefined substitution referenced: "image2". /build/reproducible-path/dipy-1.9.0/doc/interfaces/registration_flow.rst:106: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/interfaces/registration_flow.rst:163: WARNING: duplicate citation Garyfallidis15, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundle_segmentation_flow.rst /build/reproducible-path/dipy-1.9.0/doc/interfaces/tracking_flow.rst:204: WARNING: duplicate citation Garyfallidis12, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/basic_flow.rst /build/reproducible-path/dipy-1.9.0/doc/recipes.rst:31: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/recipes.rst:41: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:: ERROR: Anonymous hyperlink mismatch: 1 references but 0 targets. See "backrefs" attribute for IDs. /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst:39::1: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst:73::1: WARNING: Inline strong start-string without end-string. WARNING: Failed to get a function signature for dipy.align.VerbosityLevels: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/_public.py:docstring of dipy.align._public.write_mapping:7: ERROR: Unexpected indentation. WARNING: Failed to get a function signature for dipy.align._public._METHOD_DICT: {'center_of_mass': (functools.partial(, pipeline=['center_of_mass']), None), 'translation': (functools.partial(, pipeline=['translation']), ), 'rigid_isoscaling': (functools.partial(, pipeline=['rigid_isoscaling']), ), 'rigid_scaling': (functools.partial(, pipeline=['rigid_scaling']), ), 'rigid': (functools.partial(, pipeline=['rigid']), ), 'affine': (functools.partial(, pipeline=['affine']), )} is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/_public.py:docstring of dipy.align._public._METHOD_DICT:3: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/_public.py:docstring of dipy.align._public._METHOD_DICT:4: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/_public.py:docstring of dipy.align._public._METHOD_DICT:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/_public.py:docstring of dipy.align._public._METHOD_DICT:8: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/imaffine.py:docstring of dipy.align.imaffine.AffineMap.transform:37: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/imaffine.py:docstring of dipy.align.imaffine.AffineMap.transform_inverse:37: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/imaffine.py:docstring of dipy.align.imaffine.AffineRegistration.optimize:38: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.align.imaffine._transform_method: {(2, 'nearest'): , (3, 'nearest'): , (2, 'linear'): , (3, 'linear'): } is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/imaffine.py:docstring of dipy.align.imaffine._transform_method:3: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/imaffine.py:docstring of dipy.align.imaffine._transform_method:4: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/imaffine.py:docstring of dipy.align.imaffine._transform_method:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/imaffine.py:docstring of dipy.align.imaffine._transform_method:8: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/imwarp.py:docstring of dipy.align.imwarp.SymmetricDiffeomorphicRegistration.update:29: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.align.imwarp.RegistrationStages: is not a callable object WARNING: Failed to get a function signature for dipy.align.imwarp.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/metrics.py:docstring of dipy.align.metrics.v_cycle_3d:9: ERROR: Unexpected indentation. WARNING: Failed to get a function signature for dipy.align.scalespace.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineLinearRegistration.__init__:50: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineLinearRegistration.__init__:51: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineLinearRegistration.__init__:79: WARNING: Duplicate explicit target name: "garyfallidis14". WARNING: Failed to get a function signature for dipy.align.streamlinear.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.progressive_slr:18: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.progressive_slr:20: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.progressive_slr:37: WARNING: Duplicate explicit target name: "garyfallidis15". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:62: WARNING: Duplicate explicit target name: "garyfallidis15". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:63: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:66: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:67: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:67: WARNING: Duplicate explicit target name: "garyfallidis17". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:68: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.groupwise_slr:43: WARNING: Duplicate explicit target name: "garyfallidis15". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.groupwise_slr:44: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.groupwise_slr:47: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.groupwise_slr:48: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.groupwise_slr:48: WARNING: Duplicate explicit target name: "garyfallidis17". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.groupwise_slr:49: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamwarp.py:docstring of dipy.align.streamwarp.bundlewarp_vector_filed:19: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineDistanceMetric.__init__:9: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineDistanceMetric.__init__:9: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineDistanceMetric.__init__:9: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineDistanceMetric.__init__:9: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineDistanceMetric.__init__:9: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineDistanceMetric.__init__:9: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineLinearRegistration.__init__:66: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.bundle_min_distance_fast:32: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.progressive_slr:28: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:47: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.BundleMinDistanceMetric:12: WARNING: duplicate citation Garyfallidis14, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundlewarp_registration_flow.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineLinearRegistration.__init__:75: WARNING: duplicate citation Garyfallidis15, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/registration_flow.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineLinearRegistration.__init__:79: WARNING: duplicate citation Garyfallidis14, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineLinearRegistration.__init__:82: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundle_segmentation_flow.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.progressive_slr:37: WARNING: duplicate citation Garyfallidis15, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:62: WARNING: duplicate citation Garyfallidis15, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:67: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.groupwise_slr:43: WARNING: duplicate citation Garyfallidis15, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.groupwise_slr:48: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/align/streamwarp.py:docstring of dipy.align.streamwarp.bundlewarp:49: WARNING: duplicate citation Chandio2023, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundlewarp_registration_flow.rst /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.core.rst:42::1: WARNING: Inline strong start-string without end-string. WARNING: Failed to get a function signature for dipy.core.geometry._TUPLE2AXES: {(0, 0, 0, 0): 'sxyz', (0, 0, 1, 0): 'sxyx', (0, 1, 0, 0): 'sxzy', (0, 1, 1, 0): 'sxzx', (1, 0, 0, 0): 'syzx', (1, 0, 1, 0): 'syzy', (1, 1, 0, 0): 'syxz', (1, 1, 1, 0): 'syxy', (2, 0, 0, 0): 'szxy', (2, 0, 1, 0): 'szxz', (2, 1, 0, 0): 'szyx', (2, 1, 1, 0): 'szyz', (0, 0, 0, 1): 'rzyx', (0, 0, 1, 1): 'rxyx', (0, 1, 0, 1): 'ryzx', (0, 1, 1, 1): 'rxzx', (1, 0, 0, 1): 'rxzy', (1, 0, 1, 1): 'ryzy', (1, 1, 0, 1): 'rzxy', (1, 1, 1, 1): 'ryxy', (2, 0, 0, 1): 'ryxz', (2, 0, 1, 1): 'rzxz', (2, 1, 0, 1): 'rxyz', (2, 1, 1, 1): 'rzyz'} is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/geometry.py:docstring of dipy.core.geometry._TUPLE2AXES:3: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/geometry.py:docstring of dipy.core.geometry._TUPLE2AXES:4: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/geometry.py:docstring of dipy.core.geometry._TUPLE2AXES:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/geometry.py:docstring of dipy.core.geometry._TUPLE2AXES:8: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/geometry.py:docstring of dipy.core.geometry.perpendicular_directions:32: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/geometry.py:docstring of dipy.core.geometry.perpendicular_directions:34: WARNING: Bullet list ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.core.gradients.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/gradients.py:docstring of dipy.core.gradients.gradient_table_from_bvals_bvecs:41: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/gradients.py:docstring of dipy.core.gradients.reorient_bvecs:19: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/gradients.py:docstring of dipy.core.gradients.params_to_btens:23: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/gradients.py:docstring of dipy.core.gradients.params_to_btens:24: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/optimize.py:docstring of dipy.core.optimize.Optimizer.__init__:61: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/optimize.py:docstring of dipy.core.optimize.Optimizer.__init__:69: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/optimize.py:docstring of dipy.core.optimize.Optimizer.__init__:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/optimize.py:docstring of dipy.core.optimize.Optimizer.__init__:88: WARNING: Block quote ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.core.sphere.octahedron_vertices: array([[ 1., 0., 0.], [-1., 0., 0.], [ 0., 1., 0.], [ 0., -1., 0.], [ 0., 0., 1.], [ 0., 0., -1.]]) is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.octahedron_vertices:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.octahedron_vertices:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.octahedron_vertices:87: ERROR: Unexpected indentation. WARNING: Failed to get a function signature for dipy.core.sphere.octahedron_faces: array([[0, 4, 2], [1, 5, 3], [4, 2, 1], [5, 3, 0], [1, 4, 3], [0, 5, 2], [0, 4, 3], [1, 5, 2]], dtype=uint16) is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.octahedron_faces:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.octahedron_faces:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.octahedron_faces:87: ERROR: Unexpected indentation. WARNING: Failed to get a function signature for dipy.core.sphere.icosahedron_vertices: array([[ 0.85065081, 0.52573111, 0. ], [-0.85065081, 0.52573111, 0. ], [ 0.85065081, -0.52573111, 0. ], [-0.85065081, -0.52573111, 0. ], [ 0.52573111, 0. , 0.85065081], [ 0.52573111, 0. , -0.85065081], [-0.52573111, 0. , 0.85065081], [-0.52573111, 0. , -0.85065081], [ 0. , 0.85065081, 0.52573111], [ 0. , -0.85065081, 0.52573111], [ 0. , 0.85065081, -0.52573111], [ 0. , -0.85065081, -0.52573111]]) is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.icosahedron_vertices:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.icosahedron_vertices:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.icosahedron_vertices:87: ERROR: Unexpected indentation. WARNING: Failed to get a function signature for dipy.core.sphere.icosahedron_faces: array([[ 8, 4, 0], [ 2, 5, 0], [ 2, 5, 11], [ 9, 2, 11], [ 2, 4, 0], [ 9, 2, 4], [10, 8, 1], [10, 8, 0], [10, 5, 0], [ 6, 3, 1], [ 9, 6, 3], [ 6, 8, 1], [ 6, 8, 4], [ 9, 6, 4], [ 7, 10, 1], [ 7, 10, 5], [ 7, 3, 1], [ 7, 3, 11], [ 9, 3, 11], [ 7, 5, 11]], dtype=uint16) is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.icosahedron_faces:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.icosahedron_faces:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.icosahedron_faces:87: ERROR: Unexpected indentation. WARNING: Failed to get a function signature for dipy.core.sphere.unit_octahedron: is not a callable object WARNING: Failed to get a function signature for dipy.core.sphere.unit_icosahedron: is not a callable object WARNING: Failed to get a function signature for dipy.core.sphere.hemi_icosahedron: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/optimize.py:docstring of dipy.core.optimize.PositiveDefiniteLeastSquares.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.data.rst:109::1: WARNING: Inline interpreted text or phrase reference start-string without end-string. WARNING: Failed to get a function signature for dipy.data.DATA_DIR: '/build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/data/files' is not a callable object WARNING: Failed to get a function signature for dipy.data.default_sphere: is not a callable object WARNING: Failed to get a function signature for dipy.data.small_sphere: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher.fetch_data:15: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher._make_fetcher..fetcher:10: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher.read_qtdMRI_test_retest_2subjects:1: WARNING: Inline interpreted text or phrase reference start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher.read_mni_template:34: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher.read_mni_template:39: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher.fetch_hcp:42: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher.fetch_hbn:20: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher.fetch_hbn:24: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.data.rst:28::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.data.rst:109::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/data/__init__.py:docstring of dipy.data.load_sdp_constraints:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher.fetch_hcp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/adaptive_soft_matching.py:docstring of dipy.denoise.adaptive_soft_matching.adaptive_soft_matching:10: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/adaptive_soft_matching.py:docstring of dipy.denoise.adaptive_soft_matching.adaptive_soft_matching:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/gibbs.py:docstring of dipy.denoise.gibbs.gibbs_removal:38: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/gibbs.py:docstring of dipy.denoise.gibbs.gibbs_removal:40: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.dimensionality_problem_message:5: CRITICAL: Unexpected section title. Parameters ---------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.dimensionality_problem_message:12: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.dimensionality_problem_message:14: CRITICAL: Unexpected section title. Returns ------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.genpca:56: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.localpca:63: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.localpca:67: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.mppca:40: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.mppca:44: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/nlmeans.py:docstring of dipy.denoise.nlmeans.nlmeans:7: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/nlmeans.py:docstring of dipy.denoise.nlmeans.nlmeans:9: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/nlmeans.py:docstring of dipy.denoise.nlmeans.nlmeans:10: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.piesno:56: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.piesno:57: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.piesno:61: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.piesno:62: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.estimate_sigma:38: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.estimate_sigma:39: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.estimate_sigma:42: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.estimate_sigma:43: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/non_local_means.py:docstring of dipy.denoise.non_local_means.non_local_means:8: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/non_local_means.py:docstring of dipy.denoise.non_local_means.non_local_means:10: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/non_local_means.py:docstring of dipy.denoise.non_local_means.non_local_means:11: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/non_local_means.py:docstring of dipy.denoise.non_local_means.non_local_means:32: WARNING: Duplicate explicit target name: "coupe11". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/nlmeans.py:docstring of dipy.denoise.nlmeans.nlmeans:18: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/adaptive_soft_matching.py:docstring of dipy.denoise.adaptive_soft_matching.adaptive_soft_matching:30: WARNING: duplicate citation Coupe11, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/non_local_means.py:docstring of dipy.denoise.non_local_means.non_local_means:27: WARNING: duplicate citation Coupe08, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/non_local_means.py:docstring of dipy.denoise.non_local_means.non_local_means:32: WARNING: duplicate citation Coupe11, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.denoise.rst /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.denoise.rst:50::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.denoise.rst:50::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.genpca:10: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.localpca:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.localpca:9: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.localpca:39: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.localpca:39: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.localpca:44: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.localpca:47: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.mppca:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.mppca:22: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.estimate_sigma:26: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.estimate_sigma:26: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/io/dpy.py:docstring of dipy.io.dpy.Dpy.__init__:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/io/dpy.py:docstring of dipy.io.dpy.Dpy.__init__:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/io/stateful_tractogram.py:docstring of dipy.io.stateful_tractogram.StatefulTractogram.from_sft:18: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.io.stateful_tractogram.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/io/streamline.py:docstring of dipy.io.streamline.load_generator:8: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/io/streamline.py:docstring of dipy.io.streamline.save_generator:8: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/io/utils.py:docstring of dipy.io.utils.nifti1_symmat:8: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/io/utils.py:docstring of dipy.io.utils.is_reference_info_valid:6: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/io/utils.py:docstring of dipy.io.utils.is_reference_info_valid:11: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/io/utils.py:docstring of dipy.io.utils.get_reference_info:8: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.nn.deepn4.logger: is not a callable object WARNING: Failed to get a function signature for dipy.nn.evac.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/nn/histo_resdnn.py:docstring of dipy.nn.histo_resdnn.HistoResDNN.__init__:29: WARNING: Duplicate explicit target name: "1". WARNING: Failed to get a function signature for dipy.nn.histo_resdnn.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/nn/synb0.py:docstring of dipy.nn.synb0.Synb0.__init__:18: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/nn/synb0.py:docstring of dipy.nn.synb0.Synb0.__init__:22: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/nn/synb0.py:docstring of dipy.nn.synb0.Synb0.predict:29: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.nn.synb0.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/nn/utils.py:docstring of dipy.nn.utils.normalize:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/nn/utils.py:docstring of dipy.nn.utils.normalize:11: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/nn/utils.py:docstring of dipy.nn.utils.unnormalize:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/nn/utils.py:docstring of dipy.nn.utils.unnormalize:8: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:136::1: WARNING: Inline interpreted text or phrase reference start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: WARNING: Inline substitution_reference start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/cross_validation.py:docstring of dipy.reconst.cross_validation.coeff_of_determination:5: CRITICAL: Unexpected section title. Parameters ---------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/cross_validation.py:docstring of dipy.reconst.cross_validation.coeff_of_determination:14: CRITICAL: Unexpected section title. Returns ------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/cross_validation.py:docstring of dipy.reconst.cross_validation.coeff_of_determination:19: CRITICAL: Unexpected section title. Notes ----- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/cross_validation.py:docstring of dipy.reconst.cross_validation.coeff_of_determination:27: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/cross_validation.py:docstring of dipy.reconst.cross_validation.kfold_xval:39: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:19: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:24: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:44: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:48: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:51: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:53: WARNING: Duplicate explicit target name: "4". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSDTModel.__init__:20: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSDTModel.__init__:22: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSDTModel.__init__:30: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSDTModel.__init__:35: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.auto_response:12: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.auto_response:13: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.response_from_mask:13: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.response_from_mask:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.response_from_mask:45: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.response_from_mask:46: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.estimate_response:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_deconv:1: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.mask_for_response_ssst:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.mask_for_response_ssst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.mask_for_response_ssst:34: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.mask_for_response_ssst:35: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.response_from_mask_ssst:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.response_from_mask_ssst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.response_from_mask_ssst:40: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.response_from_mask_ssst:41: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.auto_response_ssst:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.auto_response_ssst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.recursive_response:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.recursive_response:8: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.recursive_response:53: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.CorrelationTensorModel.__init__:9: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.CorrelationTensorModel.__init__:11: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.CorrelationTensorModel.predict:10: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.CorrelationTensorModel.predict:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.CorrelationTensorFit.__init__:10: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.CorrelationTensorFit.predict:11: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.multi_gaussian_k_from_c:8: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.split_cti_params:15: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.cti_prediction:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.cti_prediction:9: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.cti_prediction:13: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.ls_fit_cti:26: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.__init__:11: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.__init__:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.__init__:14: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.__init__:16: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.__init__:16: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.__init__:17: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.__init__:25: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.__init__:28: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.predict:9: WARNING: Literal block expected; none found. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.predict:10: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.__init__:16: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.__init__:17: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.ak:48: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.ak:51: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.ak:54: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.mkt:39: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.mkt:43: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.rk:67: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.rk:70: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.rk:73: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.carlson_rf:33: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_diffusion:24: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_diffusion_variance:34: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_kurtosis:41: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_kurtosis:45: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:71: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:74: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:77: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:55: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:58: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:61: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.kurtosis_maximum:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.kurtosis_maximum:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis_tensor:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis_tensor:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis_tensor:21: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis_tensor:45: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis_tensor:49: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.dki_prediction:4: CRITICAL: Unexpected section title. Parameters ---------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.dki_prediction:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.dki_prediction:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.dki_prediction:19: CRITICAL: Unexpected section title. Returns ------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.dki_prediction:26: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.ls_fit_dki:28: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.cls_fit_dki:35: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.cls_fit_dki:42: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.split_dki_param:10: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.__init__:11: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.__init__:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.__init__:14: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.__init__:17: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.__init__:17: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.__init__:24: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.predict:10: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.predict:29: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.__init__:11: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.__init__:27: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.awf:11: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.axonal_diffusivity:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.hindered_ad:10: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.hindered_evals:10: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.hindered_rd:10: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.restricted_evals:10: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.tortuosity:12: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.axonal_water_fraction:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.axonal_water_fraction:32: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.diffusion_components:9: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.diffusion_components:40: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.dkimicro_prediction:1: WARNING: Inline interpreted text or phrase reference start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.rtop_pdf:19: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.rtop_pdf:20: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.rtop_pdf:22: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.rtop_pdf:25: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.rtop_pdf:26: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.create_qspace:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.create_qtable:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.hanning_filter:12: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.LR_deconv:16: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorModel.__init__:21: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorModel.__init__:21: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorModel.__init__:48: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorModel.__init__:51: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorModel.__init__:54: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.adc:5: CRITICAL: Unexpected section title. Parameters ---------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.adc:9: CRITICAL: Unexpected section title. Returns ------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.adc:15: CRITICAL: Unexpected section title. Notes ----- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.adc:21: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.linearity:17: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.planarity:17: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.sphericity:16: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.isotropic:23: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.linearity:25: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.planarity:26: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.sphericity:25: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.wls_fit_tensor:55: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.ols_fit_tensor:42: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.restore_fit_tensor:39: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.restore_fit_tensor:40: WARNING: Explicit markup ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.reconst.dti._lt_indices: array([[0, 1, 3], [1, 2, 4], [3, 4, 5]]) is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_indices:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_indices:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_indices:87: ERROR: Unexpected indentation. WARNING: Failed to get a function signature for dipy.reconst.dti._lt_rows: array([0, 1, 1, 2, 2, 2]) is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_rows:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_rows:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_rows:87: ERROR: Unexpected indentation. WARNING: Failed to get a function signature for dipy.reconst.dti._lt_cols: array([0, 0, 1, 0, 1, 2]) is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_cols:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_cols:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_cols:87: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.quantize_evecs:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/forecast.py:docstring of dipy.reconst.forecast.ForecastModel:13: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/forecast.py:docstring of dipy.reconst.forecast.ForecastModel:17: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/forecast.py:docstring of dipy.reconst.forecast.ForecastModel:21: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorModel.__init__:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorModel.__init__:15: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorModel.__init__:15: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorModel.__init__:16: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorModel.__init__:22: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorFit.__init__:12: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorFit.__init__:19: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.lower_triangular_to_cholesky:17: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.cholesky_to_lower_triangular:17: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/gqi.py:docstring of dipy.reconst.gqi.GeneralizedQSamplingModel.__init__:21: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/gqi.py:docstring of dipy.reconst.gqi.GeneralizedQSamplingModel.__init__:23: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/gqi.py:docstring of dipy.reconst.gqi.GeneralizedQSamplingModel.__init__:24: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelTRR.__init__:16: WARNING: Literal block expected; none found. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelTRR.__init__:78: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelTRR.__init__:81: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelVP.__init__:17: WARNING: Literal block expected; none found. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelVP.__init__:31: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelVP.__init__:34: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelVP.__init__:37: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelVP.ivim_mix_cost_one:30: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelVP.ivim_mix_cost_one:34: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:16: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:20: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:24: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:28: WARNING: Duplicate explicit target name: "4". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:94: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:98: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:103: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:107: WARNING: Duplicate explicit target name: "4". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:111: WARNING: Duplicate explicit target name: "5". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:115: WARNING: Duplicate explicit target name: "6". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.msd:8: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.msd:9: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.msd:11: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.msd:12: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng:8: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng:9: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng:12: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng:13: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_parallel:8: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_parallel:9: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_parallel:12: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_parallel:13: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_perpendicular:8: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_perpendicular:9: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_perpendicular:12: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_perpendicular:13: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.norm_of_laplacian_signal:10: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.norm_of_laplacian_signal:11: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf:13: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf:14: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf_sh:9: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf_sh:10: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf_sh:13: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf_sh:14: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.qiv:8: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.qiv:9: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.qiv:13: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.qiv:14: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtap:7: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtap:8: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtap:11: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtap:12: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtop:7: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtop:8: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtop:11: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtop:12: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtpp:7: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtpp:8: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtpp:11: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtpp:12: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.isotropic_scale_factor:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.isotropic_scale_factor:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_index_matrix:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_index_matrix:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.b_mat:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.b_mat:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.b_mat_isotropic:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.b_mat_isotropic:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_phi_1d:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_phi_1d:15: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_phi_matrix:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_phi_matrix:15: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_psi_1d:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_psi_1d:15: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_psi_matrix:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_psi_matrix:15: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_odf_matrix:17: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_odf_matrix:18: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_phi_matrix:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_phi_matrix:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_radial_signal_basis:16: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_radial_signal_basis:17: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_psi_matrix:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_psi_matrix:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_radial_pdf_basis:16: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_radial_pdf_basis:17: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_matrix:23: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_matrix:24: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_matrix:27: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_matrix:28: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_sh_matrix:23: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_sh_matrix:24: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_sh_matrix:27: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_sh_matrix:28: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_laplacian_reg_matrix:18: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_laplacian_reg_matrix:19: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_laplacian_reg_matrix_from_index_matrix:18: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_laplacian_reg_matrix_from_index_matrix:19: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_index_matrix:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_index_matrix:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_u:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_u:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_t:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_t:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_s:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_s:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_STU_reg_matrices:16: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_STU_reg_matrices:17: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_laplacian_reg_matrix:22: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_laplacian_reg_matrix:23: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.generalized_crossvalidation:23: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:19: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:30: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:44: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:47: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:51: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.multi_tissue_basis:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.multi_tissue_basis:8: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.multi_shell_fiber_response:21: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.mask_for_response_msmt:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.mask_for_response_msmt:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.response_from_mask_msmt:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.response_from_mask_msmt:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.auto_response_msmt:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.auto_response_msmt:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.msd:11: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.msk:11: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2di:16: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2di:20: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2f:16: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2f:20: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2uFA:17: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2uFA:21: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.msk_from_awf:20: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.awf_from_msk:24: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.awf_from_msk:28: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.wls_fit_msdki:33: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.msd:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.msd:19: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.norm_of_laplacian_signal:14: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.odf:17: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.odf:20: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.odf_sh:17: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.odf_sh:23: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.qiv:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.qiv:22: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.qtdmri_to_mapmri_coef:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtap:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtap:20: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtop:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtop:20: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtpp:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtpp:20: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.qtdmri_to_mapmri_matrix:20: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.qtdmri_isotropic_to_mapmri_matrix:20: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.qtdmri_laplacian_reg_matrix:8: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.qtdmri_isotropic_laplacian_reg_matrix:8: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.part23_reg_matrix_q:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.part23_iso_reg_matrix_q:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.part4_reg_matrix_q:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.part4_iso_reg_matrix_q:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.part1_reg_matrix_tau:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.part23_reg_matrix_tau:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.part4_reg_matrix_tau:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.generalized_crossvalidation:5: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.GCV_cost_function:5: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.qtdmri_number_of_coefficients:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiModel.__init__:15: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiModel.__init__:21: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiModel.__init__:24: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.c_c:4: CRITICAL: Unexpected section title. Returns ------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.c_c:8: CRITICAL: Unexpected section title. Notes ----- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.c_c:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.c_m:4: CRITICAL: Unexpected section title. Returns ------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.c_m:8: CRITICAL: Unexpected section title. Notes ----- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.c_m:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.c_m:17: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.c_m:18: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.c_m:20: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.c_m:22: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.c_md:4: CRITICAL: Unexpected section title. Returns ------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.c_md:8: CRITICAL: Unexpected section title. Notes ----- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.c_md:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.c_mu:4: CRITICAL: Unexpected section title. Returns ------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.c_mu:8: CRITICAL: Unexpected section title. Notes ----- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.c_mu:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.c_mu:19: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.k_bulk:4: CRITICAL: Unexpected section title. Returns ------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.k_bulk:8: CRITICAL: Unexpected section title. Notes ----- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.k_bulk:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.k_bulk:16: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.k_bulk:18: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.k_mu:4: CRITICAL: Unexpected section title. Returns ------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.k_mu:8: CRITICAL: Unexpected section title. Notes ----- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.k_mu:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.k_mu:19: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.k_mu:20: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.k_shear:4: CRITICAL: Unexpected section title. Returns ------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.k_shear:8: CRITICAL: Unexpected section title. Notes ----- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.k_shear:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.k_shear:16: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.k_shear:17: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.k_shear:19: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.md:4: CRITICAL: Unexpected section title. Returns ------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.md:8: CRITICAL: Unexpected section title. Notes ----- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.md:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.mean_d_sq:5: CRITICAL: Unexpected section title. Returns ------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.mean_d_sq:9: CRITICAL: Unexpected section title. Notes ----- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.mean_d_sq:18: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.dtd_covariance:4: CRITICAL: Unexpected section title. Parameters ---------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.dtd_covariance:10: CRITICAL: Unexpected section title. Returns ------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.dtd_covariance:15: CRITICAL: Unexpected section title. Notes ----- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.dtd_covariance:22: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.dtd_covariance:24: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.dtd_covariance:28: CRITICAL: Unexpected section title. References ---------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.dtd_covariance:29: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.qti_signal:4: CRITICAL: Unexpected section title. Parameters ---------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.qti_signal:16: CRITICAL: Unexpected section title. Returns ------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.qti_signal:21: CRITICAL: Unexpected section title. Notes ----- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.qti_signal:27: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.qti_signal:29: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.design_matrix:4: CRITICAL: Unexpected section title. Parameters ---------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.design_matrix:9: CRITICAL: Unexpected section title. Returns ------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.design_matrix:14: CRITICAL: Unexpected section title. Notes ----- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.design_matrix:20: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.design_matrix:22: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.design_matrix:25: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.design_matrix:26: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.RumbaSDModel.__init__:23: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.RumbaSDModel.__init__:27: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.RumbaSDModel.__init__:68: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.RumbaSDModel.__init__:77: WARNING: Duplicate explicit target name: "2". WARNING: Failed to get a function signature for dipy.reconst.rumba.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.generate_kernel:11: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.generate_kernel:13: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.IsotropicFit.__init__:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.IsotropicFit.__init__:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.IsotropicFit.__init__:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.IsotropicFit.__init__:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.SparseFascicleModel.__init__:48: WARNING: Duplicate explicit target name: "rokem2014". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.SparseFascicleModel.fit:25: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.SparseFascicleModel.fit:27: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.SparseFascicleModel.fit:36: WARNING: Bullet list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.sfm_design_matrix:56: WARNING: Duplicate explicit target name: "rokem2015". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.sfm_design_matrix:61: WARNING: Duplicate explicit target name: "rokem2014". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.CsaOdfModel:5: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.OpdtModel:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.OpdtModel:9: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.QballModel:5: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_rh:33: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.bootstrap_data_array:12: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.bootstrap_data_array:14: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.bootstrap_data_array:17: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sf_to_sh:35: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sf_to_sh:38: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sf_to_sh:42: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_sf:33: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_sf:36: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_sf:40: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_sf_matrix:39: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_sf_matrix:42: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_sf_matrix:46: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.anisotropic_power:1: WARNING: Inline substitution_reference start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_from_legacy:24: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_from_legacy:27: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_from_legacy:31: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_to_legacy:24: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_to_legacy:27: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_to_legacy:31: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreFit.rtop_pdf:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreFit.rtop_pdf:7: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreFit.rtop_signal:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreFit.rtop_signal:7: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.shore_matrix_pdf:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.shore_matrix_pdf:15: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.shore_matrix_odf:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.shore_matrix_odf:15: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/utils.py:docstring of dipy.reconst.utils.dki_design_matrix:13: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:40: WARNING: Footnote [7] is not referenced. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:43: WARNING: Footnote [8] is not referenced. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:47: WARNING: Footnote [9] is not referenced. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.gen_dirac:20: ERROR: Undefined substitution referenced: "m". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sh_descoteaux_from_index:1: ERROR: Undefined substitution referenced: "m". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sh_descoteaux:1: ERROR: Undefined substitution referenced: "m". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.SparseFascicleModel.__init__:48: WARNING: duplicate citation Rokem2014, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.sfm_design_matrix:56: WARNING: duplicate citation Rokem2015, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.sfm_design_matrix:61: WARNING: duplicate citation Rokem2014, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: ERROR: Unknown target name: "lambda". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:136::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:136::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:136::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:240::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:364::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:364::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:364::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:481::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:564::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:564::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:564::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:564::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:3: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:3: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:9: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:19: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:30: ERROR: Unknown target name: "lambda". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:30: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:33: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSDTModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSDTModel.__init__:3: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSDTModel.__init__:27: ERROR: Unknown target name: "lambda". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.forward_sdt_deconv_mat:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.csdeconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_deconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_deconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_deconv:1: ERROR: Unknown target name: "lambda". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_deconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_deconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_deconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_sh_to_sharp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_sh_to_sharp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "4". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_sh_to_sharp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_sh_to_sharp:1: ERROR: Unknown target name: "lambda". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_sh_to_sharp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_sh_to_sharp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_sh_to_sharp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.mask_for_response_ssst:24: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.ak:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.ak:6: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.ak:27: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.ak:27: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.ak:30: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.kfa:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.kfa:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.kfa:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.mk:1: ERROR: Duplicate target name, cannot be used as a unique reference: "4". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.mk:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.mk:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.mkt:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.mkt:6: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.mkt:22: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.rk:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.rk:6: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.rk:27: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.rk:27: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.rk:38: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_diffusion:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_diffusion_variance:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_diffusion_variance:13: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_kurtosis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_kurtosis:20: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.apparent_kurtosis_coef:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.apparent_kurtosis_coef:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.apparent_kurtosis_coef:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "4". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:13: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:32: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:32: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:43: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:13: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:34: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:34: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:37: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis_tensor:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis_tensor:13: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis_tensor:28: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.kurtosis_fractional_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.kurtosis_fractional_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.kurtosis_fractional_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.ls_fit_dki:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.cls_fit_dki:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.predict:23: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.__init__:21: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.awf:6: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.axonal_diffusivity:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.hindered_ad:5: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.hindered_evals:5: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.hindered_rd:5: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.restricted_evals:5: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.tortuosity:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.tortuosity:7: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.axonal_water_fraction:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.diffusion_components:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.diffusion_components:34: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.dkimicro_prediction:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.msd_discrete:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.rtop_pdf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.rtop_pdf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.rtop_pdf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumDeconvModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.LR_deconv:12: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorModel.__init__:17: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.linearity:4: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.odf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.odf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.planarity:4: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.sphericity:4: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.geodesic_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.geodesic_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.geodesic_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.geodesic_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.geodesic_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.geodesic_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.geodesic_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.geodesic_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.isotropic:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.isotropic:16: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.deviatoric:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.deviatoric:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.mode:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.mode:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.linearity:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.planarity:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.sphericity:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.wls_fit_tensor:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.ols_fit_tensor:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.restore_fit_tensor:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.restore_fit_tensor:15: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/forecast.py:docstring of dipy.reconst.forecast.ForecastModel:7: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/forecast.py:docstring of dipy.reconst.forecast.ForecastModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorModel.__init__:9: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorModel.__init__:12: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.fwdti_prediction:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.wls_fit_tensor:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.lower_triangular_to_cholesky:12: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.cholesky_to_lower_triangular:6: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/gqi.py:docstring of dipy.reconst.gqi.GeneralizedQSamplingModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/gqi.py:docstring of dipy.reconst.gqi.GeneralizedQSamplingModel.__init__:6: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/gqi.py:docstring of dipy.reconst.gqi.GeneralizedQSamplingModel.__init__:6: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/gqi.py:docstring of dipy.reconst.gqi.GeneralizedQSamplingModel.__init__:28: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/gqi.py:docstring of dipy.reconst.gqi.GeneralizedQSamplingModel.__init__:28: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelVP.ivim_mix_cost_one:3: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelVP.ivim_mix_cost_one:3: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:3: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:3: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:3: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:4: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:8: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:8: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:17: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:17: ERROR: Duplicate target name, cannot be used as a unique reference: "4". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:17: ERROR: Duplicate target name, cannot be used as a unique reference: "5". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:21: ERROR: Duplicate target name, cannot be used as a unique reference: "5". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:21: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:50: ERROR: Duplicate target name, cannot be used as a unique reference: "6". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.msd:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.msd:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_parallel:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_parallel:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_perpendicular:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_perpendicular:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.norm_of_laplacian_signal:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf_sh:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf_sh:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.qiv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.qiv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtap:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtap:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtop:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtop:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtpp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtpp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_index_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.b_mat:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.b_mat_isotropic:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_phi_1d:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_phi_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_psi_1d:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_psi_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_odf_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_phi_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_radial_signal_basis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_psi_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_radial_pdf_basis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_sh_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_sh_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_sh_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_laplacian_reg_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_laplacian_reg_matrix_from_index_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_index_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_u:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_t:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_s:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_STU_reg_matrices:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_laplacian_reg_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.generalized_crossvalidation_array:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.generalized_crossvalidation:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:6: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:11: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2di:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2di:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2di:12: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2f:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2f:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2f:11: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2uFA:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2uFA:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2uFA:13: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.msk_from_awf:16: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.awf_from_msk:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.awf_from_msk:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.awf_from_msk:19: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.wls_fit_msdki:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/odf.py:docstring of dipy.reconst.odf.gfa:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriModel:1: ERROR: Unknown target name: "n". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.msd:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.msd:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.norm_of_laplacian_signal:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.odf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.odf_sh:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.odf_sh:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.qiv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.qiv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.qtdmri_to_mapmri_coef:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtap:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtap:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtop:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtop:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtpp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtpp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:1966: ERROR: Duplicate target name, cannot be used as a unique reference: "qtdmri_signal_matrix". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:1981: ERROR: Duplicate target name, cannot be used as a unique reference: "qtdmri_isotropic_signal_matrix". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:1991: ERROR: Duplicate target name, cannot be used as a unique reference: "qtdmri_eap_matrix". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:1996: ERROR: Duplicate target name, cannot be used as a unique reference: "qtdmri_isotropic_eap_matrix". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiModel.__init__:14: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.c_c:14: ERROR: Unknown target name: "c". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiFit.c_c:14: ERROR: Unknown target name: "c". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.dtd_covariance:16: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.RumbaSDModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.RumbaSDModel.__init__:13: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.rumba_deconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.rumba_deconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.rumba_deconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.mbessel_ratio:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.rumba_deconv_global:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.rumba_deconv_global:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.rumba_deconv_global:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sh_tournier_from_index:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sh_tournier_from_index:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sh_descoteaux_from_index:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sh_tournier:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sh_tournier:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sh_descoteaux:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sym_sh_mrtrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sym_sh_mrtrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sym_sh_mrtrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sym_sh_basis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sf_to_sh:15: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_sf:15: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_sf_matrix:14: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_from_legacy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_from_legacy:11: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_to_legacy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_to_legacy:11: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreModel:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreModel:1: ERROR: Duplicate target name, cannot be used as a unique reference: "5". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreFit.msd:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreFit.msd:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreFit.rtop_pdf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreFit.rtop_signal:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.shore_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.shore_matrix_pdf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.shore_matrix_odf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.evaluate_results:9: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.recognize:23: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.recognize:25: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.recognize:55: WARNING: Inline literal start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.recognize:56: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.recognize:57: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.recognize:79: WARNING: Duplicate explicit target name: "garyfallidis17". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.refine:25: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.refine:27: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.refine:57: WARNING: Inline literal start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.refine:58: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.refine:59: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.refine:81: WARNING: Duplicate explicit target name: "garyfallidis17". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.refine:86: WARNING: Explicit markup ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.segment.bundles.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.ba_analysis:24: WARNING: Duplicate explicit target name: "garyfallidis12". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.cluster_bundle:23: WARNING: Duplicate explicit target name: "garyfallidis12". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_shape_similarity:10: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_shape_similarity:12: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_shape_similarity:13: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_shape_similarity:26: WARNING: Duplicate explicit target name: "chandio2020". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_shape_similarity:27: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_shape_similarity:32: WARNING: Duplicate explicit target name: "garyfallidis12". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.Cluster.assign:5: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.ClusterMap.add_cluster:5: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.ClusterMap.remove_cluster:5: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.QuickBundlesX:17: WARNING: Duplicate explicit target name: "garyfallidis12". WARNING: Failed to get a function signature for dipy.segment.clustering.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.qbx_and_merge:13: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.qbx_and_merge:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.qbx_and_merge:31: WARNING: Duplicate explicit target name: "garyfallidis12". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.qbx_and_merge:35: WARNING: Duplicate explicit target name: "garyfallidis16". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/fss.py:docstring of dipy.segment.fss.FastStreamlineSearch.radius_search:30: WARNING: Duplicate explicit target name: "stonge2022". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/mask.py:docstring of dipy.segment.mask.median_otsu:57: WARNING: Inline literal start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/metric.py:docstring of dipy.segment.metric.mdf:20: WARNING: Duplicate explicit target name: "garyfallidis12". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.recognize:18: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.__init__:38: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.recognize:79: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.refine:81: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_adjacency:22: WARNING: duplicate citation Garyfallidis12, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/tracking_flow.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.ba_analysis:24: WARNING: duplicate citation Garyfallidis12, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.cluster_bundle:23: WARNING: duplicate citation Garyfallidis12, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_shape_similarity:26: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_shape_similarity:32: WARNING: duplicate citation Garyfallidis12, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.QuickBundlesX:17: WARNING: duplicate citation Garyfallidis12, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.qbx_and_merge:31: WARNING: duplicate citation Garyfallidis12, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.qbx_and_merge:35: WARNING: duplicate citation Garyfallidis16, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/fss.py:docstring of dipy.segment.fss.FastStreamlineSearch.radius_search:30: WARNING: duplicate citation StOnge2022, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/segment/metric.py:docstring of dipy.segment.metric.mdf:20: WARNING: duplicate citation Garyfallidis12, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst WARNING: Failed to get a function signature for dipy.sims.voxel.diffusion_evals: array([0.0015, 0.0004, 0.0004]) is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.diffusion_evals:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.diffusion_evals:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.diffusion_evals:87: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.add_noise:33: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.add_noise:35: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.sticks_and_ball:30: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.callaghan_perpendicular:19: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.cylinders_and_ball_soderman:37: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.cylinders_and_ball_soderman:40: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.single_tensor:31: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.single_tensor:34: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.multi_tensor_dki:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.multi_tensor_dki:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.multi_tensor_dki:55: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.kurtosis_element:37: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.dki_signal:29: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.single_tensor_odf:22: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.single_tensor_rtop:18: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.multi_tensor_rtop:20: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.single_tensor_pdf:25: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.multi_tensor_pdf:25: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.single_tensor_msd:18: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.multi_tensor_msd:20: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.sims.rst:54::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.sims.rst:54::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/phantom.py:docstring of dipy.sims.phantom.add_noise:27: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/phantom.py:docstring of dipy.sims.phantom.add_noise:27: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.add_noise:27: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.add_noise:27: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.callaghan_perpendicular:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.cylinders_and_ball_soderman:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.cylinders_and_ball_soderman:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.kurtosis_element:33: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/stats/analysis.py:docstring of dipy.stats.analysis.assignment_map:22: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/stats/analysis.py:docstring of dipy.stats.analysis.assignment_map:21: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/tracking/utils.py:docstring of dipy.tracking.utils.transform_tracking_output:13: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/viz/horizon/app.py:docstring of dipy.viz.horizon.app.horizon:71: WARNING: Duplicate explicit target name: "horizon_ismrm19". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/viz/horizon/tab/base.py:docstring of dipy.viz.horizon.tab.base.HorizonTab.register_elements:5: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/viz/horizon/util.py:docstring of dipy.viz.horizon.util.is_binary_image:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/viz/horizon/util.py:docstring of dipy.viz.horizon.util.check_peak_size:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/viz/horizon/util.py:docstring of dipy.viz.horizon.util.check_peak_size:8: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/viz/horizon/visualizer/peak.py:docstring of dipy.viz.horizon.visualizer.peak.PeakActor:17: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/viz/panel.py:docstring of dipy.viz.panel.slicer_panel:10: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/viz/panel.py:docstring of dipy.viz.panel.slicer_panel:14: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/viz/regtools.py:docstring of dipy.viz.regtools.overlay_images:30: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/viz/regtools.py:docstring of dipy.viz.regtools.plot_2d_diffeomorphic_map:48: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/viz/regtools.py:docstring of dipy.viz.regtools.plot_slices:19: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/viz/regtools.py:docstring of dipy.viz.regtools.overlay_slices:32: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/viz/horizon/app.py:docstring of dipy.viz.horizon.app.horizon:71: WARNING: duplicate citation Horizon_ISMRM19, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.viz.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/docstring_parser.py:docstring of dipy.workflows.docstring_parser:17: WARNING: Inline literal start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:11: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:30: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:32: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:33: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:54: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:58: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:61: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.ImageRegistrationFlow.run:29: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.ApplyTransformFlow.run:11: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.NLMeansFlow.run:29: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.LPCAFlow.run:53: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.LPCAFlow.run:58: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.LPCAFlow.run:63: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.MPPCAFlow.run:30: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.MPPCAFlow.run:31: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.MPPCAFlow.run:35: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.MPPCAFlow.run:36: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.GibbsRingingFlow.run:26: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.GibbsRingingFlow.run:27: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.GibbsRingingFlow.run:30: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.GibbsRingingFlow.run:31: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/docstring_parser.py:docstring of dipy.workflows.docstring_parser.Reader.__init__:2: CRITICAL: Unexpected section title. Parameters ---------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/docstring_parser.py:docstring of dipy.workflows.docstring_parser.Reader.__init__:5: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/io.py:docstring of dipy.workflows.io.SplitFlow.run:7: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/io.py:docstring of dipy.workflows.io.SplitFlow.run:9: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/io.py:docstring of dipy.workflows.io.SplitFlow.run:10: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/nn.py:docstring of dipy.workflows.nn.EVACPlusFlow.run:20: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstDtiFlow.run:77: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstDtiFlow.run:81: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstDtiFlow.run:85: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstCSDFlow.run:66: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstCSAFlow.run:53: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstDkiFlow.run:66: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstDkiFlow.run:70: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstDkiFlow.run:75: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstRUMBAFlow.run:106: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/segment.py:docstring of dipy.workflows.segment.RecoBundlesFlow.run:54: WARNING: Duplicate explicit target name: "garyfallidis17". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/segment.py:docstring of dipy.workflows.segment.RecoBundlesFlow.run:59: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/segment.py:docstring of dipy.workflows.segment.LabelsBundlesFlow.run:16: WARNING: Duplicate explicit target name: "garyfallidis17". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.BundleAnalysisTractometryFlow.run:25: WARNING: Duplicate explicit target name: "chandio2020". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.BundleAnalysisTractometryFlow.run:26: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.LinearMixedModelsFlow.save_lmm_plot:11: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.LinearMixedModelsFlow.save_lmm_plot:13: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.LinearMixedModelsFlow.save_lmm_plot:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.BundleShapeAnalysis.run:24: WARNING: Duplicate explicit target name: "chandio2020". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.BundleShapeAnalysis.run:25: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.buan_bundle_profiles:29: WARNING: Duplicate explicit target name: "chandio2020". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.buan_bundle_profiles:30: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/viz.py:docstring of dipy.workflows.viz.HorizonFlow.run:10: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/viz.py:docstring of dipy.workflows.viz.HorizonFlow.run:11: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstDtiFlow.run:88: WARNING: Footnote [4] is not referenced. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:17: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:53: WARNING: duplicate citation Garyfallidis15, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:57: WARNING: duplicate citation Garyfallidis14, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:60: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.BundleWarpFlow.run:47: WARNING: duplicate citation Chandio2023, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.NLMeansFlow.run:28: WARNING: duplicate citation Descoteaux08, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.denoise.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstIvimFlow.run:44: WARNING: duplicate citation Stejskal65, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/reconstruction_flow.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstIvimFlow.run:50: WARNING: duplicate citation LeBihan84, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/reconstruction_flow.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/segment.py:docstring of dipy.workflows.segment.RecoBundlesFlow.run:54: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/segment.py:docstring of dipy.workflows.segment.RecoBundlesFlow.run:58: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.stats.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/segment.py:docstring of dipy.workflows.segment.LabelsBundlesFlow.run:16: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.BundleAnalysisTractometryFlow.run:25: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.BundleShapeAnalysis.run:24: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.buan_bundle_profiles:29: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/viz.py:docstring of dipy.workflows.viz.HorizonFlow.run:71: WARNING: duplicate citation Horizon_ISMRM19, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.viz.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.LPCAFlow.run:15: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.LPCAFlow.run:41: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.MPPCAFlow.run:19: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst:640: ERROR: Duplicate target name, cannot be used as a unique reference: "io_iterator". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstDkiFlow.run:27: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstRUMBAFlow.run:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_align_affine.rst:30: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_align_affine.rst:32: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_align_affine.rst:34: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_align_affine.rst:35: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_align_syn.rst:32: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_align_syn.rst:34: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_apply_transform.rst:17: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_buan_profiles.rst:38: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_buan_profiles.rst:37: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_buan_shapes.rst:25: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_buan_shapes.rst:27: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_buan_shapes.rst:40: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_buan_shapes.rst:39: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_buan_profiles.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_bundlewarp.rst:57: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_bundlewarp.rst:56: WARNING: duplicate citation Chandio2023, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_lpca.rst:48: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_lpca.rst:45: WARNING: Footnote [1] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_mppca.rst:24: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_mppca.rst:26: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_mppca.rst:43: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_mppca.rst:41: WARNING: Footnote [1] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_nlmeans.rst:43: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_nlmeans.rst:42: WARNING: duplicate citation Descoteaux08, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_patch2self.rst:32: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_patch2self.rst:34: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_patch2self.rst:50: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_patch2self.rst:49: WARNING: duplicate citation Fadnavis20, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_evac_plus.rst:38: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_evac_plus.rst:37: WARNING: duplicate citation Park2022, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csa.rst:58: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csa.rst:57: WARNING: Footnote [1] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csd.rst:35: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csd.rst:37: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csd.rst:39: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csd.rst:43: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csd.rst:44: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csd.rst:66: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csd.rst:65: WARNING: Footnote [1] is not referenced. 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[100%] user_guide/mission /build/reproducible-path/dipy-1.9.0/doc/index.rst:31: WARNING: 'any' reference target not found: examples_built/index /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundlewarp_registration_flow.rst:32: WARNING: citation not found: Chandio23 /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:104: WARNING: Could not obtain image size. :scale: option is ignored. /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:107: WARNING: Could not obtain image size. :scale: option is ignored. /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:150: WARNING: Could not obtain image size. :scale: option is ignored. /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:153: WARNING: Could not obtain image size. :scale: option is ignored. /build/reproducible-path/dipy-1.9.0/doc/old_highlights.rst:296: WARNING: undefined label: 'examples' /build/reproducible-path/dipy-1.9.0/doc/old_highlights.rst:299: WARNING: undefined label: 'examples' /build/reproducible-path/dipy-1.9.0/doc/old_news.rst:37: WARNING: undefined label: 'examples' /build/reproducible-path/dipy-1.9.0/doc/recipes.rst:15: WARNING: undefined label: 'sphx_glr_examples_built_file_formats_streamline_formats.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:11: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_dti.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:17: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_restore_dti.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:23: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_fwdti.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:29: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_dki.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:35: WARNING: undefined label: 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'sphx_glr_examples_built_reconstruction_reconst_dsi.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:89: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_dsid.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:95: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_gqi.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:101: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_sfm.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:107: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_csa.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:113: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_shore.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:119: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_mapmri.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:125: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_mapmri.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:137: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_csd.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:143: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_mcsd.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:149: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_forecast.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:155: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_rumba.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:161: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_qti.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:167: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_qtiplus.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:179: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_qtdmri.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:191: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_msdki.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:197: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_cti.py' /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.octahedron_vertices:85: WARNING: term not in glossary: 'generic type' /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.octahedron_faces:85: WARNING: term not in glossary: 'generic type' /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.icosahedron_vertices:85: WARNING: term not in glossary: 'generic type' /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.icosahedron_faces:85: WARNING: term not in glossary: 'generic type' /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_indices:85: WARNING: term not in glossary: 'generic type' /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_rows:85: WARNING: term not in glossary: 'generic type' /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_cols:85: WARNING: term not in glossary: 'generic type' /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.nls_iter:1: WARNING: citation not found: Chang2005 /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.nls_fit_tensor:1: WARNING: citation not found: Chang2005 /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.11_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.diffusion_evals:85: WARNING: term not in glossary: 'generic type' /build/reproducible-path/dipy-1.9.0/doc/stateoftheart.rst:7: WARNING: undefined label: 'examples' /build/reproducible-path/dipy-1.9.0/doc/stateoftheart.rst:24: WARNING: undefined label: 'examples' /build/reproducible-path/dipy-1.9.0/doc/user_guide/getting_started.rst:41: WARNING: undefined label: 'examples' /build/reproducible-path/dipy-1.9.0/doc/user_guide/introduction.rst:11: WARNING: undefined label: 'examples' generating indices... genindex py-modindex done writing additional pages... search done copying images... [ 17%] devel/gitwash/branch_dropdown.png copying images... [ 33%] devel/gitwash/collaborators.png copying images... [ 50%] devel/gitwash/forking_button.png copying images... [ 67%] theory/spherical_coordinates.png copying images... [ 83%] _static/colorfa.png copying images... [100%] _static/pretty_tracks.png dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 1383 warnings. The HTML pages are in _build/html. Build finished. The HTML pages are in _build/html. make[2]: Leaving directory '/build/reproducible-path/dipy-1.9.0/doc' # objects inventory is of no use for the package rm doc/_build/html/objects.inv # references to cloudflare and github are privacy breaches sed 's@https://cdnjs\.cloudflare\.com/ajax/libs/mathjax/[^/]\+/@file:///usr/share/javascript/mathjax/unpacked/@' \ -i doc/_build/html/*.html \ doc/_build/html/interfaces/*.html \ doc/_build/html/theory/*.html sed 's@https://cdn\.jsdelivr\.net/npm/mathjax[@]3/es5/tex-mml-chtml\.js@file:///usr/share/nodejs/mathjax-full/es5/tex-mml-chtml.js@' \ -i doc/_build/html/*.html \ doc/_build/html/interfaces/*.html \ doc/_build/html/reference/*.html \ doc/_build/html/theory/*.html # FIXME: references to github are for images part of dipy_data, which # is not available in debian; these may need packaging to solve the # privacy breach here. # Run tests later on # cd build to prevent use of local/not-built source tree set -ex \ ; for PYTHON in 3.12 3.11 \ ; do PYPKG="/build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python$PYTHON/dist-packages" \ ; export PYTHONPATH="$PYPKG" \ ; echo "I: Running Dipy unittests using $PYTHON" \ ; cd "$PYPKG" \ ; PATH=/build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/bin:$PATH \ xvfb-run -a -s "-screen 0 1280x1024x24 -noreset" \ python$PYTHON -m pytest -v -k 'not dipy/utils/tests/test_tractogram.py and not test_io_info and not test_concatenate_flow and not test_convert_tractogram_flow and not test_spike and not test_normalization and not test_kernel_input and not test_fbc and not test_concatenate and not dipy/align/tests/test_streamwarp.py and not dipy/denoise/tests/test_lpca.py and not dipy/reconst/tests/test_sfm.py and not dipy/workflows/tests/test_reconst_csa_csd.py and not dipy/workflows/tests/test_reconst_rumba.py' dipy \ ; rm .pytest_cache -rf \ ; done + PYPKG=/build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages + export PYTHONPATH=/build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages + echo I: Running Dipy unittests using 3.12 I: Running Dipy unittests using 3.12 + cd /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages + PATH=/build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games xvfb-run -a -s -screen 0 1280x1024x24 -noreset python3.12 -m pytest -v -k not dipy/utils/tests/test_tractogram.py and not test_io_info and not test_concatenate_flow and not test_convert_tractogram_flow and not test_spike and not test_normalization and not test_kernel_input and not test_fbc and not test_concatenate and not dipy/align/tests/test_streamwarp.py and not dipy/denoise/tests/test_lpca.py and not dipy/reconst/tests/test_sfm.py and not dipy/workflows/tests/test_reconst_csa_csd.py and not dipy/workflows/tests/test_reconst_rumba.py dipy ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-8.2.2, pluggy-1.5.0 -- /usr/bin/python3.12 cachedir: .pytest_cache rootdir: /build/reproducible-path/dipy-1.9.0 configfile: pyproject.toml collecting ... collected 1000 items / 9 deselected / 991 selected dipy/align/tests/test_api.py::test_syn_registration SKIPPED (test ne...) 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[ 99%] dipy/workflows/tests/test_workflow.py::test_force_overwrite PASSED [ 99%] dipy/workflows/tests/test_workflow.py::test_get_sub_runs PASSED [ 99%] dipy/workflows/tests/test_workflow.py::test_run PASSED [ 99%] dipy/workflows/tests/test_workflow.py::test_missing_file PASSED [100%] =============================== warnings summary =============================== dipy/reconst/qti.py:19 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/qti.py:19: SyntaxWarning: invalid escape sequence '\m' """Convert symmetric 3 x 3 matrices into 6 x 1 vectors. dipy/reconst/qti.py:57 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/qti.py:57: SyntaxWarning: invalid escape sequence '\m' """Convert 6 x 1 vectors into symmetric 3 x 3 matrices. dipy/reconst/qti.py:91 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/qti.py:91: SyntaxWarning: invalid escape sequence '\m' """Convert symmetric 6 x 6 matrices into 21 x 1 vectors. dipy/reconst/qti.py:137 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/qti.py:137: SyntaxWarning: invalid escape sequence '\m' """Convert 21 x 1 vectors into symmetric 6 x 6 matrices. dipy/reconst/qti.py:187 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/qti.py:187: SyntaxWarning: invalid escape sequence '\m' """Convert a 1 x 6 vector into a symmetric 3 x 3 matrix. dipy/reconst/qti.py:222 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/qti.py:222: SyntaxWarning: invalid escape sequence '\m' """Convert 1 x 21 vector into a symmetric 6 x 6 matrix. dipy/reconst/qti.py:280 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/qti.py:280: SyntaxWarning: invalid escape sequence '\m' """Calculate covariance of a diffusion tensor distribution (DTD). dipy/reconst/qti.py:323 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/qti.py:323: SyntaxWarning: invalid escape sequence '\e' """Generate signals using the covariance tensor signal representation. dipy/reconst/qti.py:395 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/qti.py:395: SyntaxWarning: invalid escape sequence '\m' """Calculate the design matrix from the b-tensors. dipy/reconst/qti.py:761 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/qti.py:761: SyntaxWarning: invalid escape sequence '\l' """Mean diffusivity. dipy/reconst/qti.py:783 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/qti.py:783: SyntaxWarning: invalid escape sequence '\m' """Variance of microscopic mean diffusivities. dipy/reconst/qti.py:805 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/qti.py:805: SyntaxWarning: invalid escape sequence '\m' """Shear variance. dipy/reconst/qti.py:827 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/qti.py:827: SyntaxWarning: invalid escape sequence '\m' """Total isotropic variance. dipy/reconst/qti.py:863 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/qti.py:863: SyntaxWarning: invalid escape sequence '\l' """Average of microscopic diffusion tensors' outer products with dipy/reconst/qti.py:886 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/qti.py:886: SyntaxWarning: invalid escape sequence '\m' """Normalized variance of mean diffusivities. dipy/reconst/qti.py:909 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/qti.py:909: SyntaxWarning: invalid escape sequence '\m' """Normalized microscopic anisotropy. dipy/reconst/qti.py:934 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/qti.py:934: SyntaxWarning: invalid escape sequence '\m' """Microscopic fractional anisotropy. dipy/reconst/qti.py:953 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/qti.py:953: SyntaxWarning: invalid escape sequence '\l' """Normalized macroscopic anisotropy. dipy/reconst/qti.py:979 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/qti.py:979: SyntaxWarning: invalid escape sequence '\s' """Fractional anisotropy. dipy/reconst/qti.py:998 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/qti.py:998: SyntaxWarning: invalid escape sequence '\m' """Microscopic orientation coherence. dipy/reconst/qti.py:1036 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/qti.py:1036: SyntaxWarning: invalid escape sequence '\m' """Bulk kurtosis. dipy/reconst/qti.py:1061 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/qti.py:1061: SyntaxWarning: invalid escape sequence '\m' """Shear kurtosis. dipy/reconst/qti.py:1086 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/qti.py:1086: SyntaxWarning: invalid escape sequence '\m' """Microscopic kurtosis. debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/align/tests/test_reslice.py: 46 warnings debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/denoise/tests/test_gibbs.py: 57 warnings debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/direction/tests/test_peaks.py: 250 warnings debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/tests/test_sfm.py: 16 warnings debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/utils/tests/test_parallel.py: 84 warnings debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/workflows/tests/test_denoise.py: 1 warning debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/workflows/tests/test_reconst_csa_csd.py: 12 warnings debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/workflows/tests/test_reconst_rumba.py: 42 warnings /usr/lib/python3.12/multiprocessing/popen_fork.py:66: DeprecationWarning: This process (pid=78939) is multi-threaded, use of fork() may lead to deadlocks in the child. self.pid = os.fork() debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/tests/test_sfm.py::test_sfm /usr/lib/python3/dist-packages/joblib/externals/loky/backend/fork_exec.py:38: DeprecationWarning: This process (pid=78939) is multi-threaded, use of fork() may lead to deadlocks in the child. pid = os.fork() -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html == 824 passed, 167 skipped, 9 deselected, 532 warnings in 1342.86s (0:22:22) === + rm .pytest_cache -rf + PYPKG=/build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages + export PYTHONPATH=/build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages + echo I: Running Dipy unittests using 3.11 I: Running Dipy unittests using 3.11 + cd /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages + PATH=/build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games xvfb-run -a -s -screen 0 1280x1024x24 -noreset python3.11 -m pytest -v -k not dipy/utils/tests/test_tractogram.py and not test_io_info and not test_concatenate_flow and not test_convert_tractogram_flow and not test_spike and not test_normalization and not test_kernel_input and not test_fbc and not test_concatenate and not dipy/align/tests/test_streamwarp.py and not dipy/denoise/tests/test_lpca.py and not dipy/reconst/tests/test_sfm.py and not dipy/workflows/tests/test_reconst_csa_csd.py and not dipy/workflows/tests/test_reconst_rumba.py dipy ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-8.2.2, pluggy-1.5.0 -- /usr/bin/python3.11 cachedir: .pytest_cache rootdir: /build/reproducible-path/dipy-1.9.0 configfile: pyproject.toml collecting ... collected 1000 items / 9 deselected / 991 selected dipy/align/tests/test_api.py::test_syn_registration SKIPPED (test ne...) 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[ 97%] dipy/workflows/tests/test_reconst_csa_csd.py::test_reconst_csa PASSED [ 97%] dipy/workflows/tests/test_reconst_csa_csd.py::test_reconst_csd PASSED [ 97%] dipy/workflows/tests/test_reconst_dki.py::test_reconst_dki PASSED [ 97%] dipy/workflows/tests/test_reconst_dsi.py::test_reconst_dsi PASSED [ 97%] dipy/workflows/tests/test_reconst_dti.py::test_reconst_dti_wls PASSED [ 97%] dipy/workflows/tests/test_reconst_dti.py::test_reconst_dti_nlls PASSED [ 97%] dipy/workflows/tests/test_reconst_dti.py::test_reconst_dti_alt_tensor PASSED [ 97%] dipy/workflows/tests/test_reconst_ivim.py::test_reconst_ivim PASSED [ 98%] dipy/workflows/tests/test_reconst_mapmri.py::test_reconst_mmri_laplacian PASSED [ 98%] dipy/workflows/tests/test_reconst_mapmri.py::test_reconst_mmri_none PASSED [ 98%] dipy/workflows/tests/test_reconst_mapmri.py::test_reconst_mmri_both SKIPPED [ 98%] dipy/workflows/tests/test_reconst_mapmri.py::test_reconst_mmri_positivity SKIPPED [ 98%] dipy/workflows/tests/test_reconst_rumba.py::test_reconst_rumba PASSED [ 98%] dipy/workflows/tests/test_segment.py::test_median_otsu_flow PASSED [ 98%] dipy/workflows/tests/test_segment.py::test_recobundles_flow PASSED [ 98%] dipy/workflows/tests/test_stats.py::test_stats PASSED [ 98%] dipy/workflows/tests/test_stats.py::test_buan_bundle_profiles SKIPPED [ 98%] dipy/workflows/tests/test_stats.py::test_bundle_analysis_tractometry_flow SKIPPED [ 99%] dipy/workflows/tests/test_stats.py::test_linear_mixed_models_flow SKIPPED [ 99%] dipy/workflows/tests/test_stats.py::test_bundle_shape_analysis_flow SKIPPED [ 99%] dipy/workflows/tests/test_tracking.py::test_particle_filtering_tracking_workflows PASSED [ 99%] dipy/workflows/tests/test_tracking.py::test_local_fiber_tracking_workflow PASSED [ 99%] dipy/workflows/tests/test_viz.py::test_horizon_flow SKIPPED (Require...) [ 99%] dipy/workflows/tests/test_workflow.py::test_force_overwrite PASSED [ 99%] dipy/workflows/tests/test_workflow.py::test_get_sub_runs PASSED [ 99%] dipy/workflows/tests/test_workflow.py::test_run PASSED [ 99%] dipy/workflows/tests/test_workflow.py::test_missing_file PASSED [100%] =============================== warnings summary =============================== dipy/reconst/qti.py:19 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/qti.py:19: DeprecationWarning: invalid escape sequence '\m' """Convert symmetric 3 x 3 matrices into 6 x 1 vectors. dipy/reconst/qti.py:57 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/qti.py:57: DeprecationWarning: invalid escape sequence '\m' """Convert 6 x 1 vectors into symmetric 3 x 3 matrices. dipy/reconst/qti.py:91 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/qti.py:91: DeprecationWarning: invalid escape sequence '\m' """Convert symmetric 6 x 6 matrices into 21 x 1 vectors. dipy/reconst/qti.py:137 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/qti.py:137: DeprecationWarning: invalid escape sequence '\m' """Convert 21 x 1 vectors into symmetric 6 x 6 matrices. dipy/reconst/qti.py:187 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/qti.py:187: DeprecationWarning: invalid escape sequence '\m' """Convert a 1 x 6 vector into a symmetric 3 x 3 matrix. dipy/reconst/qti.py:222 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/qti.py:222: DeprecationWarning: invalid escape sequence '\m' """Convert 1 x 21 vector into a symmetric 6 x 6 matrix. dipy/reconst/qti.py:280 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/qti.py:280: DeprecationWarning: invalid escape sequence '\m' """Calculate covariance of a diffusion tensor distribution (DTD). dipy/reconst/qti.py:323 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/qti.py:323: DeprecationWarning: invalid escape sequence '\e' """Generate signals using the covariance tensor signal representation. dipy/reconst/qti.py:395 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/qti.py:395: DeprecationWarning: invalid escape sequence '\m' """Calculate the design matrix from the b-tensors. dipy/reconst/qti.py:761 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/qti.py:761: DeprecationWarning: invalid escape sequence '\l' """Mean diffusivity. dipy/reconst/qti.py:783 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/qti.py:783: DeprecationWarning: invalid escape sequence '\m' """Variance of microscopic mean diffusivities. dipy/reconst/qti.py:805 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/qti.py:805: DeprecationWarning: invalid escape sequence '\m' """Shear variance. dipy/reconst/qti.py:827 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/qti.py:827: DeprecationWarning: invalid escape sequence '\m' """Total isotropic variance. dipy/reconst/qti.py:863 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/qti.py:863: DeprecationWarning: invalid escape sequence '\l' """Average of microscopic diffusion tensors' outer products with dipy/reconst/qti.py:886 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/qti.py:886: DeprecationWarning: invalid escape sequence '\m' """Normalized variance of mean diffusivities. dipy/reconst/qti.py:909 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/qti.py:909: DeprecationWarning: invalid escape sequence '\m' """Normalized microscopic anisotropy. dipy/reconst/qti.py:934 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/qti.py:934: DeprecationWarning: invalid escape sequence '\m' """Microscopic fractional anisotropy. dipy/reconst/qti.py:953 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/qti.py:953: DeprecationWarning: invalid escape sequence '\l' """Normalized macroscopic anisotropy. dipy/reconst/qti.py:979 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/qti.py:979: DeprecationWarning: invalid escape sequence '\s' """Fractional anisotropy. dipy/reconst/qti.py:998 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/qti.py:998: DeprecationWarning: invalid escape sequence '\m' """Microscopic orientation coherence. dipy/reconst/qti.py:1036 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/qti.py:1036: DeprecationWarning: invalid escape sequence '\m' """Bulk kurtosis. dipy/reconst/qti.py:1061 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/qti.py:1061: DeprecationWarning: invalid escape sequence '\m' """Shear kurtosis. dipy/reconst/qti.py:1086 /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/qti.py:1086: DeprecationWarning: invalid escape sequence '\m' """Microscopic kurtosis. -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html === 824 passed, 167 skipped, 9 deselected, 23 warnings in 1456.56s (0:24:16) === + rm .pytest_cache -rf # Cleanup files landing unnecessarily in the python3 modules directory. rm -fv debian/python3-dipy/usr/lib/python3*/dist-packages/*.nii.gz removed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dirs.nii.gz' removed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/gfa.nii.gz' removed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/inc_static.nii.gz' removed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/indices.nii.gz' removed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/shm.nii.gz' removed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/values.nii.gz' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dirs.nii.gz' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/gfa.nii.gz' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/inc_static.nii.gz' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/indices.nii.gz' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/shm.nii.gz' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/values.nii.gz' rm -fv debian/python3-dipy/usr/lib/python3*/dist-packages/*.trk removed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/moved.trk' removed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/moved_centroids.trk' removed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/moving_centroids.trk' removed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/recognized_orig.trk' removed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/static_centroids.trk' removed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/tractogram.trk' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/moved.trk' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/moved_centroids.trk' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/moving_centroids.trk' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/recognized_orig.trk' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/static_centroids.trk' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/tractogram.trk' rm -fv debian/python3-dipy/usr/lib/python3*/dist-packages/affine.txt removed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/affine.txt' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/affine.txt' # Cleanup files landing in non-standard path rm -rfv debian/python3-dipy/usr/doc removed 'debian/python3-dipy/usr/doc/dipy/examples/fast_streamline_search.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/bundle_assignment_maps.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/bundle_group_registration.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/surface_seed.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/combined_workflow_creation.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_gqi.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/bundle_registration.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/streamline_tools.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/bundlewarp_registration.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/viz_slice.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reslice_datasets.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/segment_quickbundles.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/denoise_localpca.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/viz_roi_contour.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_deterministic.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_qtdmri.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/denoise_ascm.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_stopping_criterion.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/affine_registration_masks.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/simulate_dki.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/gradients_spheres.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_csa_parallel.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_dsid.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/streamline_length.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_dsi.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/segment_extending_clustering_framework.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_dki.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_ptt.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/affine_registration_3d.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_dsi_metrics.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/workflow_creation.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_mcsd.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/syn_registration_2d.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_introduction_eudx.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/bundle_shape_similarity.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_mapmri.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/viz_advanced.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/bundle_extraction.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_sfm.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/histology_resdnn.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/segment_clustering_features.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/denoise_gibbs.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/denoise_mppca.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_ivim.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/viz_bundles.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/brain_extraction_dwi.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_shore.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_rumba.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/streamline_formats.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_msdki.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/linear_fascicle_evaluation.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_qti.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/cluster_confidence.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/path_length_map.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tissue_classification.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/kfold_xval.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/syn_registration_3d.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/afq_tract_profiles.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_probabilistic.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_rumba.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/quick_start.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_sh.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/motion_correction.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_fwdti.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_bootstrap_peaks.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_shore_metrics.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/streamline_registration.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_qtiplus.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_csa.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/piesno.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/snr_in_cc.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_csd_parallel.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_pft.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/contextual_enhancement.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_dti.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/fiber_to_bundle_coherence.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/simulate_multi_tensor.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_csd.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_cti.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/denoise_nlmeans.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/denoise_patch2self.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/segment_clustering_metrics.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/restore_dti.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_sfm.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/register_binary_fuzzy.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_dki_micro.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_forecast.py' removed directory 'debian/python3-dipy/usr/doc/dipy/examples' removed directory 'debian/python3-dipy/usr/doc/dipy' removed directory 'debian/python3-dipy/usr/doc' make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installdocs: warning: Cannot auto-detect main package for python-dipy-doc. If the default is wrong, please use --doc-main-package dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' set -e \ ; test -d debian/python3-dipy/usr/lib || exit 0 \ ; for lib in $(find debian/python3-dipy/usr/lib -name "*.so") \ ; do sdir=$(dirname $lib) \ ; tdir=debian/python3-dipy-lib/${sdir#*python3-dipy/} \ ; mkdir -p "${tdir}" \ ; mv -v "${lib}" "${tdir}" \ ; done renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/utils/omp.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/utils/omp.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/utils/tests/test_fast_numpy.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/utils/tests/test_fast_numpy.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/utils/fast_numpy.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/utils/fast_numpy.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/direction/bootstrap_direction_getter.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/direction/bootstrap_direction_getter.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/direction/ptt_direction_getter.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/direction/ptt_direction_getter.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/direction/probabilistic_direction_getter.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/direction/probabilistic_direction_getter.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/direction/closest_peak_direction_getter.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/direction/closest_peak_direction_getter.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/direction/pmf.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/direction/pmf.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/quick_squash.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/reconst/quick_squash.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/vec_val_sum.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/reconst/vec_val_sum.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/recspeed.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/reconst/recspeed.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/reconst/eudx_direction_getter.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/reconst/eudx_direction_getter.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/segment/mrf.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/segment/mrf.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/segment/metricspeed.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/segment/metricspeed.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/segment/clusteringspeed.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/segment/clusteringspeed.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/segment/cythonutils.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/segment/cythonutils.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/segment/featurespeed.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/segment/featurespeed.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/segment/clustering_algorithms.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/segment/clustering_algorithms.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/core/interpolation.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/core/interpolation.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/align/parzenhist.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/align/parzenhist.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/align/sumsqdiff.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/align/sumsqdiff.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/align/expectmax.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/align/expectmax.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/align/crosscorr.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/align/crosscorr.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/align/bundlemin.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/align/bundlemin.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/align/vector_fields.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/align/vector_fields.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/align/transforms.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/align/transforms.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/tracking/localtrack.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/tracking/localtrack.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/tracking/propspeed.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/tracking/propspeed.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/tracking/distances.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/tracking/distances.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/tracking/direction_getter.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/tracking/direction_getter.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/tracking/streamlinespeed.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/tracking/streamlinespeed.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/tracking/fbcmeasures.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/tracking/fbcmeasures.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/tracking/vox2track.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/tracking/vox2track.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/tracking/stopping_criterion.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/tracking/stopping_criterion.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/denoise/pca_noise_estimate.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/denoise/pca_noise_estimate.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/denoise/denspeed.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/denoise/denspeed.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/denoise/shift_twist_convolution.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/denoise/shift_twist_convolution.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/denoise/enhancement_kernel.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/denoise/enhancement_kernel.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.11/dist-packages/dipy/denoise/nlmeans_block.cpython-311-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.11/dist-packages/dipy/denoise/nlmeans_block.cpython-311-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/utils/omp.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/utils/omp.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/utils/tests/test_fast_numpy.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/utils/tests/test_fast_numpy.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/utils/fast_numpy.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/utils/fast_numpy.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/direction/closest_peak_direction_getter.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/direction/closest_peak_direction_getter.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/direction/probabilistic_direction_getter.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/direction/probabilistic_direction_getter.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/direction/pmf.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/direction/pmf.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/direction/bootstrap_direction_getter.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/direction/bootstrap_direction_getter.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/direction/ptt_direction_getter.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/direction/ptt_direction_getter.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/vec_val_sum.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/reconst/vec_val_sum.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/recspeed.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/reconst/recspeed.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/quick_squash.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/reconst/quick_squash.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/eudx_direction_getter.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/reconst/eudx_direction_getter.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/segment/metricspeed.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/segment/metricspeed.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/segment/cythonutils.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/segment/cythonutils.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/segment/clustering_algorithms.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/segment/clustering_algorithms.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/segment/clusteringspeed.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/segment/clusteringspeed.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/segment/mrf.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/segment/mrf.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/segment/featurespeed.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/segment/featurespeed.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/core/interpolation.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/core/interpolation.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/align/sumsqdiff.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/align/sumsqdiff.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/align/expectmax.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/align/expectmax.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/align/bundlemin.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/align/bundlemin.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/align/vector_fields.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/align/vector_fields.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/align/transforms.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/align/transforms.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/align/crosscorr.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/align/crosscorr.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/align/parzenhist.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/align/parzenhist.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/tracking/streamlinespeed.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/tracking/streamlinespeed.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/tracking/propspeed.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/tracking/propspeed.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/tracking/distances.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/tracking/distances.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/tracking/localtrack.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/tracking/localtrack.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/tracking/direction_getter.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/tracking/direction_getter.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/tracking/fbcmeasures.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/tracking/fbcmeasures.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/tracking/vox2track.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/tracking/vox2track.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/denoise/nlmeans_block.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/denoise/nlmeans_block.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/denoise/denspeed.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/denoise/denspeed.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/denoise/shift_twist_convolution.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/denoise/shift_twist_convolution.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/denoise/enhancement_kernel.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/denoise/enhancement_kernel.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/denoise/pca_noise_estimate.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/denoise/pca_noise_estimate.cpython-312-x86_64-linux-gnu.so' dh_numpy3 -ppython3-dipy-lib dh_python3 I: dh_python3 pydist:325: Ignoring complex environment marker: tomli; python_version < "3.11" and extra == "doc" make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild debian/rules execute_before_dh_link-indep make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' rm -fv debian/python-dipy-doc/usr/share/doc/python-dipy-doc/html/_static/doctools.js removed 'debian/python-dipy-doc/usr/share/doc/python-dipy-doc/html/_static/doctools.js' rm -fv debian/python-dipy-doc/usr/share/doc/python-dipy-doc/html/_static/language_data.js removed 'debian/python-dipy-doc/usr/share/doc/python-dipy-doc/html/_static/language_data.js' rm -fv debian/python-dipy-doc/usr/share/doc/python-dipy-doc/html/_static/searchtools.js removed 'debian/python-dipy-doc/usr/share/doc/python-dipy-doc/html/_static/searchtools.js' make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' dh_compress -X.py -X.html -X.css -X.jpg -X.txt -X.js -X.json -X.rtc \ -X.par -X.bin -Xobjects.inv make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' dh_fixperms -O--buildsystem=pybuild debian/rules execute_after_dh_fixperms-arch make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' # Fix a couple of executables neither elf nor scripts. find debian/python3-dipy/usr/lib/python3*/dist-packages/ \ -name '*.py' \ -exec chmod -x '{}' '+' make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' dh_missing -O--buildsystem=pybuild debian/rules override_dh_dwz make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' dh_dwz || true make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-dipy: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Provides field of package python3-dipy: substitution variable ${python3:Provides} used, but is not defined dpkg-gencontrol: warning: Provides field of package python3-dipy-lib: substitution variable ${python3:Provides} used, but is not defined dpkg-gencontrol: warning: Provides field of package python3-dipy-lib: substitution variable ${python3:Provides} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-dipy' in '../python3-dipy_1.9.0-3_all.deb'. dpkg-deb: building package 'python3-dipy-lib-dbgsym' in '../python3-dipy-lib-dbgsym_1.9.0-3_amd64.deb'. dpkg-deb: building package 'python3-dipy-lib' in '../python3-dipy-lib_1.9.0-3_amd64.deb'. dpkg-deb: building package 'python-dipy-doc' in '../python-dipy-doc_1.9.0-3_all.deb'. dpkg-genbuildinfo --build=binary -O../dipy_1.9.0-3_amd64.buildinfo dpkg-genchanges --build=binary -O../dipy_1.9.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from dipy-1.9.0/debian/source/options: --extend-diff-ignore=(^|/)dipy/COMMIT_INFO.txt$ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4185279 and its subdirectories I: Current time: Mon Jul 14 21:57:57 -12 2025 I: pbuilder-time-stamp: 1752573477 Wed Jun 12 03:34:59 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Wed Jun 12 03:34:59 UTC 2024 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Wed Jun 12 05:51:28 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Wed Jun 12 05:51:29 UTC 2024 I: dipy_1.9.0-3_amd64.changes: Format: 1.8 Date: Wed, 22 May 2024 17:19:21 +0200 Source: dipy Binary: python-dipy-doc python3-dipy python3-dipy-lib python3-dipy-lib-dbgsym Architecture: all amd64 Version: 1.9.0-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: python-dipy-doc - Python library for the analysis of diffusion MRI datasets -- docu python3-dipy - Python library for the analysis of diffusion MRI datasets python3-dipy-lib - Python library for the analysis of diffusion MRI datasets -- Pyth Closes: 1071448 Changes: dipy (1.9.0-3) unstable; urgency=medium . * Team upload. * Skip the test_check_img_shapes on 32-bit systems. Closes: #1071448 Checksums-Sha1: 492bab20368569d706bc62a5cff7352887f45fa1 13597 dipy_1.9.0-3_amd64.buildinfo 1ee816bf0e8a0ba01b4eb9798162bd43602517a1 2792604 python-dipy-doc_1.9.0-3_all.deb 8863ab9ce294d81a053b240929bde7368fb25616 38683676 python3-dipy-lib-dbgsym_1.9.0-3_amd64.deb 58b9c3accecda805a144f0d3cab1ba06e9cc801b 3935264 python3-dipy-lib_1.9.0-3_amd64.deb 8a97e71cfcf33d0f75859aa1084e0d191a2b0e4d 3475176 python3-dipy_1.9.0-3_all.deb Checksums-Sha256: 04c6e414c2dcf9c58ad1fd83a31a33bc4306199a2f2c0108dfd45db80a14350a 13597 dipy_1.9.0-3_amd64.buildinfo 74e389d6711f0f2a5041883b1dc8264fbe27324c271b47a231bb531e3d8c7825 2792604 python-dipy-doc_1.9.0-3_all.deb 8d66217aa37f0b2958be6b16999c216a95887ac23487d9cacaa6b271e653bd4f 38683676 python3-dipy-lib-dbgsym_1.9.0-3_amd64.deb 3efd79ada0268fc359fd253a3841fa78054897d90c319db186b219ad54767ee1 3935264 python3-dipy-lib_1.9.0-3_amd64.deb 52d3af3f29cfe514b87a5264d6b1f64dd8538d032ba962aa35a2d98555b41b23 3475176 python3-dipy_1.9.0-3_all.deb Files: 4484c304290b198c3cfe7b6804206877 13597 python optional dipy_1.9.0-3_amd64.buildinfo 64dacf75abe73ae3b696c8c8044597c4 2792604 doc optional python-dipy-doc_1.9.0-3_all.deb 9adea452c0391c235ffc60fe74d41214 38683676 debug optional python3-dipy-lib-dbgsym_1.9.0-3_amd64.deb a7e171ed1ff6661f8a43e515e4c8ec66 3935264 python optional python3-dipy-lib_1.9.0-3_amd64.deb 31fae17dd27d7720aab1cc0504085600 3475176 python optional python3-dipy_1.9.0-3_all.deb Wed Jun 12 05:51:30 UTC 2024 I: diffoscope 271 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_8-24006.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.avjxISDF/dipy_1.9.0-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.avjxISDF/dipy_1.9.0-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.avjxISDF/dipy_1.9.0-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.avjxISDF/b1/dipy_1.9.0-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.avjxISDF/b2/dipy_1.9.0-3_amd64.changes ## close_archive (total time: 0.005s) 0.003s 182 calls diffoscope.comparators.xz.XzContainer 0.001s 162 calls diffoscope.comparators.deb.DebTarContainer 0.000s 14 calls diffoscope.comparators.deb.DebContainer 0.000s 20 calls diffoscope.comparators.tar.TarContainer ## command (total time: 4510.002s) 1844.986s 76806 calls readelf 1500.950s 8904 calls diff 639.167s 17160 calls objdump 270.624s 156 calls objcopy 243.035s 182 calls xz 8.453s 1727 calls strings 2.666s 1551 calls html2text 0.045s 16 calls cmp 0.045s 16 calls cmp (external) 0.030s 309 calls cmp (internal) ## compare_files (cumulative) (total time: 12107.196s) 2256.121s 1 call abc.DotChangesFile 2256.039s 3 calls abc.DebFile 2255.660s 6 calls abc.XzFile 2251.180s 3 calls abc.DebDataTarFile 2233.775s 157 calls abc.ElfFile 795.926s 780 calls diffoscope.comparators.elf.ElfCodeSection 43.707s 2419 calls diffoscope.comparators.elf.ElfSection 11.229s 141 calls abc.HtmlFile 2.085s 159 calls diffoscope.comparators.elf.ElfStringSection 1.302s 78 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.118s 3 calls abc.TarFile 0.027s 3 calls abc.Md5sumsFile 0.026s 2 calls abc.TextFile ## container_extract (total time: 262.698s) 243.049s 182 calls diffoscope.comparators.xz.XzContainer 19.214s 846 calls diffoscope.comparators.deb.DebTarContainer 0.419s 188 calls diffoscope.comparators.deb.DebContainer 0.016s 26 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 4.255s) 4.255s 1724 calls linediff ## has_same_content_as (total time: 0.135s) 0.061s 141 calls abc.HtmlFile 0.029s 157 calls abc.ElfFile 0.022s 2419 calls diffoscope.comparators.elf.ElfSection 0.008s 4 calls abc.DebFile 0.007s 780 calls diffoscope.comparators.elf.ElfCodeSection 0.002s 159 calls diffoscope.comparators.elf.ElfStringSection 0.001s 7 calls abc.TextFile 0.001s 78 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.001s 6 calls abc.Md5sumsFile 0.001s 3 calls abc.DebDataTarFile 0.001s 5 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.001s 6 calls abc.XzFile 0.000s 3 calls abc.TarFile 0.000s 1 call abc.DotChangesFile ## main (total time: 2427.083s) 2427.072s 2 calls outputs 0.010s 1 call cleanup ## open_archive (total time: 0.005s) 0.003s 182 calls diffoscope.comparators.xz.XzContainer 0.002s 162 calls diffoscope.comparators.deb.DebTarContainer 0.000s 20 calls diffoscope.comparators.tar.TarContainer 0.000s 14 calls diffoscope.comparators.deb.DebContainer ## output (total time: 170.056s) 169.990s 1 call html 0.044s 1 call text 0.022s 1 call json ## recognizes (total time: 263.221s) 239.991s 2820 calls diffoscope.comparators.utils.archive.ArchiveMember 22.566s 32324 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.540s 12 calls diffoscope.comparators.binary.FilesystemFile 0.123s 432 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 1.757s) 1.757s 3769 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 40min 27.432s CPU time consumed: 51min 42.922s Wed Jun 12 06:31:58 UTC 2024 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Wed Jun 12 06:31:58 UTC 2024 E: dipy failed to build reproducibly in unstable on amd64. Wed Jun 12 06:32:00 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Jun 12 06:32:00 UTC 2024 I: Submitting 16K b1/dipy_1.9.0-3_amd64.buildinfo.asc Wed Jun 12 06:32:01 UTC 2024 I: Submitting 16K b2/dipy_1.9.0-3_amd64.buildinfo.asc Wed Jun 12 06:32:02 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Jun 12 06:32:02 UTC 2024 I: Done submitting .buildinfo files. Wed Jun 12 06:32:02 UTC 2024 I: Removing signed dipy_1.9.0-3_amd64.buildinfo.asc files: removed './b1/dipy_1.9.0-3_amd64.buildinfo.asc' removed './b2/dipy_1.9.0-3_amd64.buildinfo.asc'