Sun Dec 1 15:24:28 UTC 2024 I: starting to build cutesv/unstable/amd64 on jenkins on '2024-12-01 15:24' Sun Dec 1 15:24:28 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_20/38085/console.log Sun Dec 1 15:24:28 UTC 2024 I: Downloading source for unstable/cutesv=2.1.1-1 --2024-12-01 15:24:29-- http://deb.debian.org/debian/pool/main/c/cutesv/cutesv_2.1.1-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2175 (2.1K) [text/prs.lines.tag] Saving to: ‘cutesv_2.1.1-1.dsc’ 0K .. 100% 330M=0s 2024-12-01 15:24:29 (330 MB/s) - ‘cutesv_2.1.1-1.dsc’ saved [2175/2175] Sun Dec 1 15:24:29 UTC 2024 I: cutesv_2.1.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: cutesv Binary: cutesv Architecture: all Version: 2.1.1-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Steffen Moeller Homepage: https://github.com/tjiangHIT/cuteSV Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/cutesv Vcs-Git: https://salsa.debian.org/med-team/cutesv.git Testsuite: autopkgtest Testsuite-Triggers: freebayes Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools Package-List: cutesv deb science optional arch=all Checksums-Sha1: 4b06e6b40a8001ab7943d29da88c5c00b208ae95 1917271 cutesv_2.1.1.orig.tar.gz 6957807bcaff43fc8e7119536323af64f73e563e 8120 cutesv_2.1.1-1.debian.tar.xz Checksums-Sha256: ebba8ffe0943626a9c1606adeed37bec3a4c0816c4fb7af8d6d219d7bee2acd2 1917271 cutesv_2.1.1.orig.tar.gz 89b4d3075ee1d6d157a7452bf16d9c23c93bd38c74ea91c5ad3c6e668d17ceca 8120 cutesv_2.1.1-1.debian.tar.xz Files: a2372dc3cc6df433681cea4c12a99d5f 1917271 cutesv_2.1.1.orig.tar.gz 8af9b1264d418d781f3031baf22b179f 8120 cutesv_2.1.1-1.debian.tar.xz Dgit: 0847739541281e64f51582ebe553ceb6ec50fbfa debian archive/debian/2.1.1-1 https://git.dgit.debian.org/cutesv -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmbHZl0UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdog3xAAsXOtLzYW4t9xAg+QtD3tqOczukKo /axUoJF4Mq521XpkC/U1Fdxmf0BTWGWRmU9jD8CQri5VXm5kQI/YWi3B2bPoCjHo cjYfEOMTu/ax3Z5cYd7jsn9W7r7Ot7Sg5fWOw3eFt2maj66owXN1e2Rq8F0iDpNA OGp5FBQpvlerOLrC1mXWXAYTDFCf0fy8ZRM0nw+cZLWNAg/M9dPcf64jA1fZWe/J c9uAIfc5D9uklhsr0zDd/MW0NFbzpZ5W/AD/cpwQ/JQoWwD94ZsGIcxnHiaXQWiV aOA/w23Wcus6puMb+HQYtcoK7U8UFBEcR4RYqwSTgm0gS7EVo1aXBqj8GuejbFI5 ill0hE3q7ERB4w+BZOFb4m6RapBacNfWzF/V5j4cUhtv10KEhZuL6WU5XWEB7Puf VHzI0LOPkxiMSY3TSV5ywgqJuwmwc/MFI7LKcTdVqqT2QgaaXXj+GPu0WwKilXHX SCqUul3GAGgJZJx6dYJPO5eWCPfPUoai8IKTAwLwvRsAGr5imL5YgFcVNaF0T2IQ fzOk0qhlnpTwy/FKS1aKUTi8OEQSMfjgHpYRkw0f9NvhwsfbPvx4pkF65NRh2XGh HTbx1+MmDLPOn19SfxPQEs6M4S3MIaH1wSDEMo+zyWYbzAX+ZULZhXG7tCMBErXu 7EkLbVwASERA+WY= =p/jd -----END PGP SIGNATURE----- Sun Dec 1 15:24:29 UTC 2024 I: Checking whether the package is not for us Sun Dec 1 15:24:29 UTC 2024 I: Starting 1st build on remote node ionos15-amd64.debian.net. Sun Dec 1 15:24:29 UTC 2024 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Sun Dec 1 15:25:16 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Jan 3 09:47:29 -12 2026 I: pbuilder-time-stamp: 1767476849 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [cutesv_2.1.1-1.dsc] I: copying [./cutesv_2.1.1.orig.tar.gz] I: copying [./cutesv_2.1.1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Aug 22 16:25:01 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./cutesv_2.1.1-1.dsc: no acceptable signature found dpkg-source: info: extracting cutesv in cutesv-2.1.1 dpkg-source: info: unpacking cutesv_2.1.1.orig.tar.gz dpkg-source: info: unpacking cutesv_2.1.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying PythonPath.patch dpkg-source: info: applying typo.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/581887/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='4182b02dfeb04d5492b0688dd31f1ba9' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='581887' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.34a1eMPI/pbuilderrc_uQax --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.34a1eMPI/b1 --logfile b1/build.log cutesv_2.1.1-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/581887/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 28.2 MB of archives. After unpacking 111 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2~rc1-1 [23.6 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.7-1 [9712 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 44 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.2.0-1 [731 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20241024 [109 kB] Fetched 28.2 MB in 4s (8031 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_amd64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:amd64 (3.12.7-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20289 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_amd64.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.2~rc1-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2~rc1-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_amd64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21350 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.7-1_amd64.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../09-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... 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Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../22-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../24-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... 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Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../32-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../33-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../34-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../35-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../36-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. 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Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:amd64 (1.47.2~rc1-1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Jan 3 21:48:01 UTC 2026. Universal Time is now: Sat Jan 3 21:48:01 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up readline-common (8.2-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:amd64 (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up dh-python (6.20241024) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/cutesv-2.1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cutesv_2.1.1-1_source.changes dpkg-buildpackage: info: source package cutesv dpkg-buildpackage: info: source version 2.1.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/cutesv-2.1.1' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf src/cuteSV.egg-info make[1]: Leaving directory '/build/reproducible-path/cutesv-2.1.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/benchmarks copying src/benchmarks/eval_forcecalling.py -> /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/benchmarks copying src/benchmarks/vcf2bedpe.py -> /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/benchmarks copying src/benchmarks/multi_platform.py -> /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/benchmarks copying src/benchmarks/cmp_NA19240.py -> /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/benchmarks copying src/benchmarks/eval_BND.py -> /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/benchmarks copying src/benchmarks/__init__.py -> /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/benchmarks copying src/benchmarks/eval_sim.py -> /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/benchmarks copying src/benchmarks/sta_venn.py -> /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/benchmarks copying src/benchmarks/eval_trio.py -> /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/benchmarks creating /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/cuteSV copying src/cuteSV/cuteSV_resolveINDEL.py -> /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/cuteSV copying src/cuteSV/diploid_calling.py -> /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/cuteSV copying src/cuteSV/cuteSV_resolveTRA.py -> /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/cuteSV copying src/cuteSV/cuteSV_forcecalling.py -> /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/cuteSV copying src/cuteSV/__init__.py -> /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/cuteSV copying src/cuteSV/cuteSV_Description.py -> /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/cuteSV copying src/cuteSV/cuteSV_genotype.py -> /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/cuteSV copying src/cuteSV/CommandRunner.py -> /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/cuteSV copying src/cuteSV/cuteSV_resolveDUP.py -> /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/cuteSV copying src/cuteSV/cuteSV_resolveINV.py -> /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/cuteSV running build_scripts creating build/scripts-3.12 copying and adjusting src/cuteSV/cuteSV -> build/scripts-3.12 changing mode of build/scripts-3.12/cuteSV from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build; python3.12 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/cutesv/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/cutesv-2.1.1/debian/cutesv running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_scripts running install_lib creating /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages creating /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/benchmarks copying /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/benchmarks/eval_forcecalling.py -> /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/benchmarks creating /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/benchmarks/__pycache__ copying /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/benchmarks/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/benchmarks/__pycache__ copying /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/benchmarks/vcf2bedpe.py -> /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/benchmarks copying /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/benchmarks/multi_platform.py -> /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/benchmarks copying /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/benchmarks/cmp_NA19240.py -> /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/benchmarks copying /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/benchmarks/eval_BND.py -> /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/benchmarks copying /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/benchmarks/__init__.py -> /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/benchmarks copying /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/benchmarks/eval_sim.py -> /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/benchmarks copying /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/benchmarks/sta_venn.py -> /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/benchmarks copying /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/benchmarks/eval_trio.py -> /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/benchmarks creating /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/cuteSV creating /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/cuteSV/__pycache__ copying /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/cuteSV/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/cuteSV/__pycache__ copying /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/cuteSV/cuteSV_resolveINDEL.py -> /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/cuteSV copying /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/cuteSV/diploid_calling.py -> /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/cuteSV copying /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/cuteSV/cuteSV_resolveTRA.py -> /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/cuteSV copying /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/cuteSV/cuteSV_forcecalling.py -> /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/cuteSV copying /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/cuteSV/__init__.py -> /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/cuteSV copying /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/cuteSV/cuteSV_Description.py -> /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/cuteSV copying /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/cuteSV/cuteSV_genotype.py -> /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/cuteSV copying /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/cuteSV/CommandRunner.py -> /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/cuteSV copying /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/cuteSV/cuteSV_resolveDUP.py -> /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/cuteSV copying /build/reproducible-path/cutesv-2.1.1/.pybuild/cpython3_3.12/build/cuteSV/cuteSV_resolveINV.py -> /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/cuteSV byte-compiling /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/benchmarks/eval_forcecalling.py to eval_forcecalling.cpython-312.pyc byte-compiling /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/benchmarks/vcf2bedpe.py to vcf2bedpe.cpython-312.pyc byte-compiling /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/benchmarks/multi_platform.py to multi_platform.cpython-312.pyc byte-compiling /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/benchmarks/cmp_NA19240.py to cmp_NA19240.cpython-312.pyc byte-compiling /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/benchmarks/eval_BND.py to eval_BND.cpython-312.pyc byte-compiling /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/benchmarks/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/benchmarks/eval_sim.py to eval_sim.cpython-312.pyc byte-compiling /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/benchmarks/sta_venn.py to sta_venn.cpython-312.pyc byte-compiling /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/benchmarks/eval_trio.py to eval_trio.cpython-312.pyc byte-compiling /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/cuteSV/cuteSV_resolveINDEL.py to cuteSV_resolveINDEL.cpython-312.pyc byte-compiling /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/cuteSV/diploid_calling.py to diploid_calling.cpython-312.pyc byte-compiling /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/cuteSV/cuteSV_resolveTRA.py to cuteSV_resolveTRA.cpython-312.pyc byte-compiling /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/cuteSV/cuteSV_forcecalling.py to cuteSV_forcecalling.cpython-312.pyc byte-compiling /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/cuteSV/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/cuteSV/cuteSV_Description.py to cuteSV_Description.cpython-312.pyc byte-compiling /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/cuteSV/cuteSV_genotype.py to cuteSV_genotype.cpython-312.pyc byte-compiling /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/cuteSV/CommandRunner.py to CommandRunner.cpython-312.pyc byte-compiling /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/cuteSV/cuteSV_resolveDUP.py to cuteSV_resolveDUP.cpython-312.pyc byte-compiling /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/cuteSV/cuteSV_resolveINV.py to cuteSV_resolveINV.cpython-312.pyc running install_data copying LICENSE -> /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/. running install_egg_info running egg_info creating src/cuteSV.egg-info writing src/cuteSV.egg-info/PKG-INFO writing dependency_links to src/cuteSV.egg-info/dependency_links.txt writing requirements to src/cuteSV.egg-info/requires.txt writing top-level names to src/cuteSV.egg-info/top_level.txt writing manifest file 'src/cuteSV.egg-info/SOURCES.txt' reading manifest file 'src/cuteSV.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'src/cuteSV.egg-info/SOURCES.txt' Copying src/cuteSV.egg-info to /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/lib/python3.12/dist-packages/cuteSV-2.1.1.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/bin copying build/scripts-3.12/cuteSV -> /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/bin changing mode of /build/reproducible-path/cutesv-2.1.1/debian/cutesv/usr/bin/cuteSV to 755 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/cutesv-2.1.1' dh_install find debian -name LICENSE -delete make[1]: Leaving directory '/build/reproducible-path/cutesv-2.1.1' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:316: Cannot find package that provides pyvcf3. Please add package that provides it to Build-Depends or add "pyvcf3 python3-pyvcf3" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild debian/rules override_dh_installdeb make[1]: Entering directory '/build/reproducible-path/cutesv-2.1.1' # either remove or create non-conflicting location / separate package for testing rm -fr debian/cutesv/usr/lib/python3/dist-packages/benchmarks dh_installdeb make[1]: Leaving directory '/build/reproducible-path/cutesv-2.1.1' dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'cutesv' in '../cutesv_2.1.1-1_all.deb'. dpkg-genbuildinfo --build=binary -O../cutesv_2.1.1-1_amd64.buildinfo dpkg-genchanges --build=binary -O../cutesv_2.1.1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/581887 and its subdirectories I: Current time: Sat Jan 3 09:48:14 -12 2026 I: pbuilder-time-stamp: 1767476894 Sun Dec 1 15:25:16 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Sun Dec 1 15:25:16 UTC 2024 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Sun Dec 1 15:29:01 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Sun Dec 1 15:29:01 UTC 2024 I: cutesv_2.1.1-1_amd64.changes: Format: 1.8 Date: Thu, 22 Aug 2024 18:10:46 +0200 Source: cutesv Binary: cutesv Architecture: all Version: 2.1.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: cutesv - comprehensive discovery of structural variations of genomic seque Changes: cutesv (2.1.1-1) unstable; urgency=medium . * Team upload. . [ Andreas Tille ] * [skip ci] Forwarded . [ Étienne Mollier ] * New upstream version 2.1.1 * no_install_depends_cython.patch: delete: applied upstream. * d/control: declare compliance to standards version 4.7.0. * PythonPath.patch: declare forwarding not-needed. * typo.patch: new: fix a typo caught by lintian. * d/cuteSV.1: also fix the typo in the maintainer manual page. * d/t/{control,run-basic-tests}: new: superficial autopkgtest. Checksums-Sha1: f8d607e69a225d39d07c4332684272b786fe4835 37364 cutesv_2.1.1-1_all.deb 7e5ae04032f1fe867c01853b09ae718c0d61e5e5 5854 cutesv_2.1.1-1_amd64.buildinfo Checksums-Sha256: 2d1784f6e00def897b58760f05e547b53ec3bd1c19a015e166a5d2a2f638458f 37364 cutesv_2.1.1-1_all.deb c9b8f008ace5ea4cab850a6a8d556304e2d8f22a678d21c6bcb458fbfad8cec1 5854 cutesv_2.1.1-1_amd64.buildinfo Files: c3e5f836522a04d64dbcad4043960d15 37364 science optional cutesv_2.1.1-1_all.deb 0192c53e1e23ea73a59d7ffca6794e67 5854 science optional cutesv_2.1.1-1_amd64.buildinfo Sun Dec 1 15:29:02 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_20-38085.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.34a1eMPI/cutesv_2.1.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.34a1eMPI/cutesv_2.1.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.34a1eMPI/cutesv_2.1.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.34a1eMPI/b1/cutesv_2.1.1-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.34a1eMPI/b2/cutesv_2.1.1-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.333s) 0.333s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.015s) 0.015s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 632ms CPU time consumed: 631ms Sun Dec 1 15:29:03 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Sun Dec 1 15:29:03 UTC 2024 I: cutesv from unstable built successfully and reproducibly on amd64. Sun Dec 1 15:29:04 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Dec 1 15:29:04 UTC 2024 I: Submitting 8.0K b1/cutesv_2.1.1-1_amd64.buildinfo.asc Sun Dec 1 15:29:05 UTC 2024 I: Submitting 8.0K b2/cutesv_2.1.1-1_amd64.buildinfo.asc Sun Dec 1 15:29:06 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Dec 1 15:29:06 UTC 2024 I: Done submitting .buildinfo files. Sun Dec 1 15:29:06 UTC 2024 I: Removing signed cutesv_2.1.1-1_amd64.buildinfo.asc files: removed './b1/cutesv_2.1.1-1_amd64.buildinfo.asc' removed './b2/cutesv_2.1.1-1_amd64.buildinfo.asc'