Sun Dec 15 00:05:38 UTC 2024 I: starting to build biomaj3-core/unstable/amd64 on jenkins on '2024-12-15 00:05' Sun Dec 15 00:05:38 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_15/41350/console.log Sun Dec 15 00:05:38 UTC 2024 I: Downloading source for unstable/biomaj3-core=3.0.28-3 --2024-12-15 00:05:38-- http://deb.debian.org/debian/pool/main/b/biomaj3-core/biomaj3-core_3.0.28-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2192 (2.1K) [text/prs.lines.tag] Saving to: ‘biomaj3-core_3.0.28-3.dsc’ 0K .. 100% 304M=0s 2024-12-15 00:05:38 (304 MB/s) - ‘biomaj3-core_3.0.28-3.dsc’ saved [2192/2192] Sun Dec 15 00:05:38 UTC 2024 I: biomaj3-core_3.0.28-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: biomaj3-core Binary: python3-biomaj3-core Architecture: all Version: 3.0.28-3 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou Homepage: https://github.com/genouest/biomaj-core Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/biomaj3-core Vcs-Git: https://salsa.debian.org/med-team/biomaj3-core.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-pytest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-elasticsearch, python3-pytest, python3-requests, python3-setuptools Package-List: python3-biomaj3-core deb python optional arch=all Checksums-Sha1: 74048677c92c2f141e5ab3c13b97bd56db423909 28580 biomaj3-core_3.0.28.orig.tar.xz dd3c37df29800070f46801403544291cefde334e 13488 biomaj3-core_3.0.28-3.debian.tar.xz Checksums-Sha256: 34f9c50e06c247aae25b350f00c62745406fb2c9ab89e6957777651da8f0ff2e 28580 biomaj3-core_3.0.28.orig.tar.xz a8dde66bc7b3cb72b9d024d52a9e7599547bf53a4ca18bb4d5359aa0608caf3f 13488 biomaj3-core_3.0.28-3.debian.tar.xz Files: 96c32622c68fb36f1a9d2a2730b91b71 28580 biomaj3-core_3.0.28.orig.tar.xz ad4fdf9d1b315776f87e2c86c873d42d 13488 biomaj3-core_3.0.28-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmdd2osRHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBqpXRAAg3vs4rVXFkOJFq7xk+1XrwmWhsjYmgaP 7Lf701KSmAl6O5VPh2spybPHjfS5v79mDrnLLfioLe4xX4CW4eJQqDv8FQyGKx9k TCfrmwdXpVEKExuRSHmOYfI5GB/PplgKaLYemb/tCwzFXv6udSOsmrQNJtlMystW SXrAWOdbzizL04rTX4QxK32q2reWZ3BdD16N+1P8zjcvdTJ08zi1BvAk0CLfyRSE QZaVNU0rAZTBBJWON9Dil3JWiYThAiKG5knaalnomDVF/cobdH7a101tAGNnhy8z 10AMzJP5LTbNqIFUzENVxiciRSJwgUfAamT7uwZV5SC/rcElVqO+76iUDjZwEGt4 7GHFArkyW8zUag7fv0pv938OH9uNRr+4jbmIN1aBMt7w3UJR9ZrYxf0qmSPRRIZa ZQehRLl5EH1Ef/j3pfp7z57hJQ5DDdho7Fb3YHC676qHCPrANPKPHm1wFhdAUUkN WhutB9l/0KZc0G5tRd9RhjyAKkplIrO1/CRfeqiqvWVZTyPxDw9dy/OB/AmOS1V5 HZoQQ+NkMh5LPo/o7BjsbpaodYxnyGzkpLvEcTwEykPQu+EST5/o1HiHa6BIKhcV pYE5HPjSaXe1wTojhRkVU28znzIirqn81SE0XV7S8EYINrr5A5dG+LWCHtqe2sX2 d+GqyewRKVs= =oqR7 -----END PGP SIGNATURE----- Sun Dec 15 00:05:38 UTC 2024 I: Checking whether the package is not for us Sun Dec 15 00:05:38 UTC 2024 I: Starting 1st build on remote node ionos11-amd64.debian.net. Sun Dec 15 00:05:38 UTC 2024 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Sun Dec 15 00:12:18 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Dec 14 12:05:43 -12 2024 I: pbuilder-time-stamp: 1734221143 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [biomaj3-core_3.0.28-3.dsc] I: copying [./biomaj3-core_3.0.28.orig.tar.xz] I: copying [./biomaj3-core_3.0.28-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Dec 14 19:20:43 2024 gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A gpgv: issuer "tchet@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./biomaj3-core_3.0.28-3.dsc: no acceptable signature found dpkg-source: info: extracting biomaj3-core in biomaj3-core-3.0.28 dpkg-source: info: unpacking biomaj3-core_3.0.28.orig.tar.xz dpkg-source: info: unpacking biomaj3-core_3.0.28-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1387711/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='0fb56248a90943a990f34962fc0d7f2a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1387711' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.E3mEdQrq/pbuilderrc_WkpM --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.E3mEdQrq/b1 --logfile b1/build.log biomaj3-core_3.0.28-3.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1387711/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-elasticsearch, python3-pytest, python3-requests, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-elasticsearch; however: Package python3-elasticsearch is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-elasticsearch{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-requests{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pygments wget 0 packages upgraded, 81 newly installed, 0 to remove and 0 not upgraded. Need to get 36.5 MB of archives. After unpacking 143 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.8-3 [817 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.8-3 [2162 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-4 [256 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2~rc1-2 [23.8 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.8-3 [1969 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.8-3 [677 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.7-1 [9712 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.1-2 [858 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.1-2 [2198 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-6 [1184 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-12 [92.0 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 62 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.2.0-1 [731 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20241024 [109 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.1-2 [1975 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.1-2 [740 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.12.7-1 [1052 B] Get: 71 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 72 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.0-1+b1 [140 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.2.3-4 [112 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 python3-elasticsearch all 7.17.6-1 [113 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.8-2 [41.6 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 78 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.4-1 [250 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Fetched 36.5 MB in 5s (7375 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.8-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-3_amd64.deb ... Unpacking python3.12-minimal (3.12.8-3) ... Setting up libpython3.12-minimal:amd64 (3.12.8-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20285 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_amd64.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.2~rc1-2_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2~rc1-2) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.8-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.8-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.8-3_amd64.deb ... Unpacking python3.12 (3.12.8-3) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-12) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:amd64 (1.47.2~rc1-2) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Dec 15 00:08:26 UTC 2024. Universal Time is now: Sun Dec 15 00:08:26 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:amd64 (3.13.1-2) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up python3.13-minimal (3.13.1-2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up openssl (3.3.2-2) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-6) ... Setting up libpython3.13-stdlib:amd64 (3.13.1-2) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.1-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:amd64 (3.12.8-3) ... Setting up python3.12 (3.12.8-3) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:amd64 (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-packaging (24.2-1) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-idna (3.8-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.2.3-4) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-elasticsearch (7.17.6-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3-pytest (8.3.4-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.12.7-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up dh-python (6.20241024) ... Processing triggers for libc-bin (2.40-4) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/biomaj3-core-3.0.28/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../biomaj3-core_3.0.28-3_source.changes dpkg-buildpackage: info: source package biomaj3-core dpkg-buildpackage: info: source version 3.0.28-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.12_biomaj-core/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build/biomaj_core copying biomaj_core/__init__.py -> /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build/biomaj_core copying biomaj_core/bmajindex.py -> /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build/biomaj_core copying biomaj_core/config.py -> /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build/biomaj_core copying biomaj_core/utils.py -> /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build/biomaj_core running egg_info creating biomaj_core.egg-info writing biomaj_core.egg-info/PKG-INFO writing dependency_links to biomaj_core.egg-info/dependency_links.txt writing requirements to biomaj_core.egg-info/requires.txt writing top-level names to biomaj_core.egg-info/top_level.txt writing manifest file 'biomaj_core.egg-info/SOURCES.txt' reading manifest file 'biomaj_core.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'biomaj_core.egg-info/SOURCES.txt' copying biomaj_core/mimes-bio.txt -> /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build/biomaj_core I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.12_biomaj-core/build/biomaj_core copying biomaj_core/__init__.py -> /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.12_biomaj-core/build/biomaj_core copying biomaj_core/bmajindex.py -> /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.12_biomaj-core/build/biomaj_core copying biomaj_core/config.py -> /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.12_biomaj-core/build/biomaj_core copying biomaj_core/utils.py -> /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.12_biomaj-core/build/biomaj_core running egg_info writing biomaj_core.egg-info/PKG-INFO writing dependency_links to biomaj_core.egg-info/dependency_links.txt writing requirements to biomaj_core.egg-info/requires.txt writing top-level names to biomaj_core.egg-info/top_level.txt reading manifest file 'biomaj_core.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'biomaj_core.egg-info/SOURCES.txt' copying biomaj_core/mimes-bio.txt -> /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.12_biomaj-core/build/biomaj_core dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/biomaj3-core-3.0.28 plugins: typeguard-4.4.1 collected 12 items tests/test_biomaj.py ..........ss [100%] =============================== warnings summary =============================== biomaj_core/utils.py:11 /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build/biomaj_core/utils.py:11: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =================== 10 passed, 2 skipped, 1 warning in 2.48s =================== I: pybuild base:311: cd /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.12_biomaj-core/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/biomaj3-core-3.0.28 plugins: typeguard-4.4.1 collected 12 items tests/test_biomaj.py ..........ss [100%] =============================== warnings summary =============================== biomaj_core/utils.py:11 /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.12_biomaj-core/build/biomaj_core/utils.py:11: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =================== 10 passed, 2 skipped, 1 warning in 3.46s =================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-biomaj3-core/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biomaj_core.egg-info/PKG-INFO writing dependency_links to biomaj_core.egg-info/dependency_links.txt writing requirements to biomaj_core.egg-info/requires.txt writing top-level names to biomaj_core.egg-info/top_level.txt reading manifest file 'biomaj_core.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'biomaj_core.egg-info/SOURCES.txt' running install_lib creating /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.13/dist-packages creating /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.13/dist-packages/biomaj_core copying /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build/biomaj_core/__init__.py -> /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.13/dist-packages/biomaj_core copying /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build/biomaj_core/bmajindex.py -> /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.13/dist-packages/biomaj_core copying /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build/biomaj_core/mimes-bio.txt -> /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.13/dist-packages/biomaj_core copying /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build/biomaj_core/config.py -> /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.13/dist-packages/biomaj_core creating /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.13/dist-packages/biomaj_core/__pycache__ copying /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build/biomaj_core/__pycache__/bmajindex.cpython-313.pyc -> /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.13/dist-packages/biomaj_core/__pycache__ copying /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build/biomaj_core/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.13/dist-packages/biomaj_core/__pycache__ copying /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build/biomaj_core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.13/dist-packages/biomaj_core/__pycache__ copying /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build/biomaj_core/__pycache__/config.cpython-313.pyc -> /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.13/dist-packages/biomaj_core/__pycache__ copying /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build/biomaj_core/utils.py -> /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.13/dist-packages/biomaj_core byte-compiling /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.13/dist-packages/biomaj_core/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.13/dist-packages/biomaj_core/bmajindex.py to bmajindex.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.13/dist-packages/biomaj_core/config.py to config.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.13/dist-packages/biomaj_core/utils.py to utils.cpython-313.pyc running install_egg_info Copying biomaj_core.egg-info to /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.13/dist-packages/biomaj_core-3.0.28.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biomaj_core.egg-info/PKG-INFO writing dependency_links to biomaj_core.egg-info/dependency_links.txt writing requirements to biomaj_core.egg-info/requires.txt writing top-level names to biomaj_core.egg-info/top_level.txt reading manifest file 'biomaj_core.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'biomaj_core.egg-info/SOURCES.txt' running install_lib creating /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.12/dist-packages creating /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.12/dist-packages/biomaj_core copying /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.12_biomaj-core/build/biomaj_core/__init__.py -> /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.12/dist-packages/biomaj_core copying /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.12_biomaj-core/build/biomaj_core/bmajindex.py -> /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.12/dist-packages/biomaj_core copying /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.12_biomaj-core/build/biomaj_core/mimes-bio.txt -> /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.12/dist-packages/biomaj_core copying /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.12_biomaj-core/build/biomaj_core/config.py -> /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.12/dist-packages/biomaj_core creating /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.12/dist-packages/biomaj_core/__pycache__ copying /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.12_biomaj-core/build/biomaj_core/__pycache__/bmajindex.cpython-312.pyc -> /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.12/dist-packages/biomaj_core/__pycache__ copying /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.12_biomaj-core/build/biomaj_core/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.12/dist-packages/biomaj_core/__pycache__ copying /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.12_biomaj-core/build/biomaj_core/__pycache__/config.cpython-312.pyc -> /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.12/dist-packages/biomaj_core/__pycache__ copying /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.12_biomaj-core/build/biomaj_core/__pycache__/utils.cpython-312.pyc -> /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.12/dist-packages/biomaj_core/__pycache__ copying /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.12_biomaj-core/build/biomaj_core/utils.py -> /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.12/dist-packages/biomaj_core byte-compiling /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.12/dist-packages/biomaj_core/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.12/dist-packages/biomaj_core/bmajindex.py to bmajindex.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.12/dist-packages/biomaj_core/config.py to config.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.12/dist-packages/biomaj_core/utils.py to utils.cpython-312.pyc running install_egg_info Copying biomaj_core.egg-info to /build/reproducible-path/biomaj3-core-3.0.28/debian/python3-biomaj3-core/usr/lib/python3.12/dist-packages/biomaj_core-3.0.28.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Recommends field of package python3-biomaj3-core: substitution variable ${python3:Recommends} used, but is not defined dpkg-gencontrol: warning: Suggests field of package python3-biomaj3-core: substitution variable ${python3:Suggests} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-biomaj3-core' in '../python3-biomaj3-core_3.0.28-3_all.deb'. dpkg-genbuildinfo --build=binary -O../biomaj3-core_3.0.28-3_amd64.buildinfo dpkg-genchanges --build=binary -O../biomaj3-core_3.0.28-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1387711 and its subdirectories I: Current time: Sat Dec 14 12:12:17 -12 2024 I: pbuilder-time-stamp: 1734221537 Sun Dec 15 00:12:19 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Sun Dec 15 00:12:19 UTC 2024 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Sun Dec 15 00:14:31 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Sun Dec 15 00:14:32 UTC 2024 I: biomaj3-core_3.0.28-3_amd64.changes: Format: 1.8 Date: Sat, 14 Dec 2024 20:06:30 +0100 Source: biomaj3-core Binary: python3-biomaj3-core Architecture: all Version: 3.0.28-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alexandre Detiste Description: python3-biomaj3-core - BioMAJ core library - Python 3.X Changes: biomaj3-core (3.0.28-3) unstable; urgency=medium . * Team upload. * Drop dependency on python3-mock Checksums-Sha1: eb07407e542b0467f5bd011a27e5363556fc1d95 6481 biomaj3-core_3.0.28-3_amd64.buildinfo aa6755c0fa8e0a302504ff8cb97e48744ea6281d 25100 python3-biomaj3-core_3.0.28-3_all.deb Checksums-Sha256: fbe1c8872a0bd59bc00cc18b0e17f9d7b40ea5e7b3f8ac35b02c8fe06541f053 6481 biomaj3-core_3.0.28-3_amd64.buildinfo f46061aeac6e7d2ed386b624b7a17c78f1816350afe35ba7c535808d1222647d 25100 python3-biomaj3-core_3.0.28-3_all.deb Files: 37945f5e203024eab227d834cc40fd2f 6481 python optional biomaj3-core_3.0.28-3_amd64.buildinfo ce14194f7c6ce55f90c291225ed67d2e 25100 python optional python3-biomaj3-core_3.0.28-3_all.deb Sun Dec 15 00:14:33 UTC 2024 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_15-41350.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.E3mEdQrq/biomaj3-core_3.0.28-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.E3mEdQrq/biomaj3-core_3.0.28-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.E3mEdQrq/biomaj3-core_3.0.28-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.E3mEdQrq/b1/biomaj3-core_3.0.28-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.E3mEdQrq/b2/biomaj3-core_3.0.28-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.329s) 0.329s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.013s) 0.013s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 624ms CPU time consumed: 624ms Sun Dec 15 00:14:34 UTC 2024 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Sun Dec 15 00:14:34 UTC 2024 I: biomaj3-core from unstable built successfully and reproducibly on amd64. Sun Dec 15 00:14:35 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Dec 15 00:14:35 UTC 2024 I: Submitting 8.0K b1/biomaj3-core_3.0.28-3_amd64.buildinfo.asc Sun Dec 15 00:14:35 UTC 2024 I: Submitting 8.0K b2/biomaj3-core_3.0.28-3_amd64.buildinfo.asc Sun Dec 15 00:14:36 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Dec 15 00:14:36 UTC 2024 I: Done submitting .buildinfo files. Sun Dec 15 00:14:36 UTC 2024 I: Removing signed biomaj3-core_3.0.28-3_amd64.buildinfo.asc files: removed './b1/biomaj3-core_3.0.28-3_amd64.buildinfo.asc' removed './b2/biomaj3-core_3.0.28-3_amd64.buildinfo.asc'