Sat May 4 17:51:48 UTC 2024 I: starting to build assembly-stats/unstable/amd64 on jenkins on '2024-05-04 17:51' Sat May 4 17:51:48 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_34/9620/console.log Sat May 4 17:51:48 UTC 2024 I: Downloading source for unstable/assembly-stats=1.0.1+ds-6 --2024-05-04 17:51:48-- http://deb.debian.org/debian/pool/main/a/assembly-stats/assembly-stats_1.0.1%2bds-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2091 (2.0K) [text/prs.lines.tag] Saving to: ‘assembly-stats_1.0.1+ds-6.dsc’ 0K .. 100% 300M=0s 2024-05-04 17:51:48 (300 MB/s) - ‘assembly-stats_1.0.1+ds-6.dsc’ saved [2091/2091] Sat May 4 17:51:48 UTC 2024 I: assembly-stats_1.0.1+ds-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: assembly-stats Binary: assembly-stats Architecture: any Version: 1.0.1+ds-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/sanger-pathogens/assembly-stats Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/assembly-stats Vcs-Git: https://salsa.debian.org/med-team/assembly-stats.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libgtest-dev Package-List: assembly-stats deb science optional arch=any Checksums-Sha1: c9a0b6f7e668fe11a1cc7a012621bb64a67b9086 17648 assembly-stats_1.0.1+ds.orig.tar.xz 73aa80ec4efcb5f41ec22075157903c18791d3d4 4564 assembly-stats_1.0.1+ds-6.debian.tar.xz Checksums-Sha256: e0d7a14e3e22ab3d1b8b6d8698722e240eb1b5c2e9ef433a952eda55ccb098b5 17648 assembly-stats_1.0.1+ds.orig.tar.xz b0d7cc0efe9805aff2bd7f826cbe591cf701939cf8eb7e516fdeb6dc9782e0e8 4564 assembly-stats_1.0.1+ds-6.debian.tar.xz Files: 73b1b8d8f124752df0bae708e7ab14ec 17648 assembly-stats_1.0.1+ds.orig.tar.xz b438ed60308b017981a3fb1466ce5751 4564 assembly-stats_1.0.1+ds-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmN1TFERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtG/8w//bxk+WmX0wWMEuxRT+onz18K+ylzQddg0 pV1PxDliwbNOKThfMdofjYwWXpdWLmOrab0TMQaYdMTChObB7ExaPVNNnMayu0Ux MWlKd8es9RM+HmIV8v5x0fOfnMNq4Dlb6P5yw9lB8j8kJ/+AAIgj8XGuT9QPHi0R er0kpJwmjTN4K3OOndfaRbfJ3F6Vb/lxSDiGYEocz5URZ4qUbWeBMcND1DtcB3tN H8oefaHQatu4XS9MAbGtj5lLgvcV1jevCOuIMm0FEsrs0mosCW7NNRX55hDhYpbB IbF+2s3YdotfYkHgJ/xi3AJX0FZRqokfUe4PUBallGEgmjzfAM9vOy8IS76lvnxv bTlh8LR9nbXp3cV3/vj7OUKoqcQpYpI4gu6JBMjmMMa3Off014d5AZ9193ev6r/a OFWwjM4MIhl2LQkOA1rhyuUfcpuA5P4xDq2TrFPdxCZJfy7Pf9gJNLYZglfseycO rReeRJF8xOKfFMkY8PY1dsGPZhx//IsP6at2mfdAcU6X6Vfd1vfn3IXR15PhiVB3 A4VjxyT8dg60Zk/87MlaoW5Xt99mcxy+XHdWCNsIquJuUyRnVLLEP18XtLXcbdj3 lX3qzuGksDX2Y6MdYF7YNU63gpfsQ08g72MW7f2rfXz2ryI7Y3pf9mPI6Yp0rWkX ajX8idRRy/s= =XtXw -----END PGP SIGNATURE----- Sat May 4 17:51:48 UTC 2024 I: Checking whether the package is not for us Sat May 4 17:51:48 UTC 2024 I: Starting 1st build on remote node infom02-amd64.debian.net. Sat May 4 17:51:48 UTC 2024 I: Preparing to do remote build '1' on infom02-amd64.debian.net. Sat May 4 17:52:42 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jun 6 12:14:50 -12 2025 I: pbuilder-time-stamp: 1749255290 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [assembly-stats_1.0.1+ds-6.dsc] I: copying [./assembly-stats_1.0.1+ds.orig.tar.xz] I: copying [./assembly-stats_1.0.1+ds-6.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Nov 16 20:47:13 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./assembly-stats_1.0.1+ds-6.dsc: no acceptable signature found dpkg-source: info: extracting assembly-stats in assembly-stats-1.0.1+ds dpkg-source: info: unpacking assembly-stats_1.0.1+ds.orig.tar.xz dpkg-source: info: unpacking assembly-stats_1.0.1+ds-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packages_gtest.patch dpkg-source: info: applying do-not-test-forcefully.patch dpkg-source: info: applying add-debug-flag.patch dpkg-source: info: applying gcc11.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/587631/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='b86271726acc466980eba0f90c1c8e10' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='587631' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gImeiHFc/pbuilderrc_5Zi6 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gImeiHFc/b1 --logfile b1/build.log assembly-stats_1.0.1+ds-6.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom02-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 6 14:05 /bin -> usr/bin I: user script /srv/workspace/pbuilder/587631/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 56 newly installed, 0 to remove and 0 not upgraded. Need to get 36.5 MB of archives. After unpacking 139 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.2-2 [346 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1~rc2-1 [22.6 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 26 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.7.1-5 [441 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.48.0-1.1 [147 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.29.2-2 [2167 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.29.2-2 [10.7 MB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 49 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 googletest all 1.14.0-1 [512 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libgtest-dev amd64 1.14.0-1+b1 [250 kB] Fetched 36.5 MB in 0s (107 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_amd64.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-4_amd64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40-8_amd64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.12.1-1_amd64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../17-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../18-libxml2_2.9.14+dfsg-1.3+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../19-libarchive13t64_3.7.2-2_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.2-2) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../20-libbrotli1_1.1.0-2+b3_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../21-libkrb5support0_1.20.1-6+b1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../22-libcom-err2_1.47.1~rc2-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1~rc2-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../23-libk5crypto3_1.20.1-6+b1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../24-libkeyutils1_1.6.3-3_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../25-libkrb5-3_1.20.1-6+b1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../26-libgssapi-krb5-2_1.20.1-6+b1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libsasl2-modules-db:amd64. 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Setting up autopoint (0.21-14) ... Setting up libjsoncpp25:amd64 (1.9.5-6+b2) ... Setting up libk5crypto3:amd64 (1.20.1-6+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up librhash0:amd64 (1.4.3-3+b1) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-4) ... Setting up libsub-override-perl (0.10-1) ... Setting up cmake-data (3.29.2-2) ... Setting up libkrb5-3:amd64 (1.20.1-6+b1) ... Setting up libssh2-1t64:amd64 (1.11.0-4.1+b2) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libgtest-dev:amd64 (1.14.0-1+b1) ... Setting up libtool (2.4.7-7) ... Setting up libldap-2.5-0:amd64 (2.5.17+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up libarchive13t64:amd64 (3.7.2-2) ... Setting up libcurl4t64:amd64 (8.7.1-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up cmake (3.29.2-2) ... Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.38-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/assembly-stats-1.0.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../assembly-stats_1.0.1+ds-6_source.changes dpkg-buildpackage: info: source package assembly-stats dpkg-buildpackage: info: source version 1.0.1+ds-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/assembly-stats-1.0.1+ds' dh_auto_configure -- -DBUILD_TESTS=ON cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTS=ON .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. 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'/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/assembly-stats.dir/build.make CMakeFiles/assembly-stats.dir/build make[3]: Leaving directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/runUnitTests.dir/build.make CMakeFiles/runUnitTests.dir/build make[3]: Entering directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' [ 60%] Building CXX object CMakeFiles/assembly-stats.dir/assembly-stats.cpp.o [ 66%] Building CXX object CMakeFiles/runUnitTests.dir/fastq_unittest.cpp.o /usr/bin/c++ -I/usr/include/gtest -Wall -g -O3 -pthread -MD -MT CMakeFiles/assembly-stats.dir/assembly-stats.cpp.o -MF CMakeFiles/assembly-stats.dir/assembly-stats.cpp.o.d -o CMakeFiles/assembly-stats.dir/assembly-stats.cpp.o -c /build/reproducible-path/assembly-stats-1.0.1+ds/assembly-stats.cpp [ 73%] Building CXX object CMakeFiles/runUnitTests.dir/fasta_unittest.cpp.o [ 80%] Building CXX object CMakeFiles/runUnitTests.dir/filetype_unittest.cpp.o /usr/bin/c++ -I/usr/include/gtest -Wall -g -O3 -pthread -MD -MT CMakeFiles/runUnitTests.dir/fastq_unittest.cpp.o -MF CMakeFiles/runUnitTests.dir/fastq_unittest.cpp.o.d -o CMakeFiles/runUnitTests.dir/fastq_unittest.cpp.o -c /build/reproducible-path/assembly-stats-1.0.1+ds/fastq_unittest.cpp [ 86%] Building CXX object CMakeFiles/runUnitTests.dir/stats_unittest.cpp.o /usr/bin/c++ -I/usr/include/gtest -Wall -g -O3 -pthread -MD -MT CMakeFiles/runUnitTests.dir/fasta_unittest.cpp.o -MF CMakeFiles/runUnitTests.dir/fasta_unittest.cpp.o.d -o CMakeFiles/runUnitTests.dir/fasta_unittest.cpp.o -c /build/reproducible-path/assembly-stats-1.0.1+ds/fasta_unittest.cpp /usr/bin/c++ -I/usr/include/gtest -Wall -g -O3 -pthread -MD -MT CMakeFiles/runUnitTests.dir/filetype_unittest.cpp.o -MF CMakeFiles/runUnitTests.dir/filetype_unittest.cpp.o.d -o CMakeFiles/runUnitTests.dir/filetype_unittest.cpp.o -c /build/reproducible-path/assembly-stats-1.0.1+ds/filetype_unittest.cpp /usr/bin/c++ -I/usr/include/gtest -Wall -g -O3 -pthread -MD -MT CMakeFiles/runUnitTests.dir/stats_unittest.cpp.o -MF CMakeFiles/runUnitTests.dir/stats_unittest.cpp.o.d -o CMakeFiles/runUnitTests.dir/stats_unittest.cpp.o -c /build/reproducible-path/assembly-stats-1.0.1+ds/stats_unittest.cpp [ 93%] Linking CXX executable assembly-stats /usr/bin/cmake -E cmake_link_script CMakeFiles/assembly-stats.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O3 -pthread -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/assembly-stats.dir/assembly-stats.cpp.o" -o assembly-stats libstats.a libfasta.a libfastq.a libfiletype.a make[3]: Leaving directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' [ 93%] Built target assembly-stats [100%] Linking CXX executable runUnitTests /usr/bin/cmake -E cmake_link_script CMakeFiles/runUnitTests.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O3 -pthread -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/runUnitTests.dir/fasta_unittest.cpp.o CMakeFiles/runUnitTests.dir/fastq_unittest.cpp.o CMakeFiles/runUnitTests.dir/filetype_unittest.cpp.o CMakeFiles/runUnitTests.dir/stats_unittest.cpp.o -o runUnitTests -lgtest -lgtest_main libfasta.a libfastq.a libfiletype.a libstats.a libfasta.a libfastq.a libfiletype.a make[3]: Leaving directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' [100%] Built target runUnitTests make[2]: Leaving directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' dh_auto_test cd obj-x86_64-linux-gnu && make -j12 test ARGS\+=--verbose ARGS\+=-j12 make[1]: Entering directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j12 UpdateCTestConfiguration from :/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: runUnitTests 1: Test command: /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu/runUnitTests 1: Working Directory: /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu 1: Test timeout computed to be: 10000000 1: Running main() from ./googletest/src/gtest_main.cc 1: [==========] Running 18 tests from 4 test suites. 1: [----------] Global test environment set-up. 1: [----------] 7 tests from Fasta 1: [ RUN ] Fasta.DefaultConstructor 1: [ OK ] Fasta.DefaultConstructor (0 ms) 1: [ RUN ] Fasta.ConstructorWithValues 1: [ OK ] Fasta.ConstructorWithValues (0 ms) 1: [ RUN ] Fasta.setValues 1: [ OK ] Fasta.setValues (0 ms) 1: [ RUN ] Fasta.LengthOfSequence 1: [ OK ] Fasta.LengthOfSequence (0 ms) 1: [ RUN ] Fasta.N_count 1: [ OK ] Fasta.N_count (0 ms) 1: [ RUN ] Fasta.Gaps 1: [ OK ] Fasta.Gaps (0 ms) 1: [ RUN ] Fasta.ReadFromFile 1: [ OK ] Fasta.ReadFromFile (0 ms) 1: [----------] 7 tests from Fasta (0 ms total) 1: 1: [----------] 4 tests from Fastq 1: [ RUN ] Fastq.DefaultConstructor 1: [ OK ] Fastq.DefaultConstructor (0 ms) 1: [ RUN ] Fastq.ConstructorWithValues 1: [ OK ] Fastq.ConstructorWithValues (0 ms) 1: [ RUN ] Fastq.setValues 1: [ OK ] Fastq.setValues (0 ms) 1: [ RUN ] Fastq.ReadFromFile 1: [ OK ] Fastq.ReadFromFile (0 ms) 1: [----------] 4 tests from Fastq (0 ms total) 1: 1: [----------] 3 tests from filetype 1: [ RUN ] filetype.FastaType 1: [ OK ] filetype.FastaType (0 ms) 1: [ RUN ] filetype.FastqType 1: [ OK ] filetype.FastqType (0 ms) 1: [ RUN ] filetype.UnknownType 1: [ OK ] filetype.UnknownType (0 ms) 1: [----------] 3 tests from filetype (0 ms total) 1: 1: [----------] 4 tests from Stats 1: [ RUN ] Stats.HumanReadable 1: [ OK ] Stats.HumanReadable (0 ms) 1: [ RUN ] Stats.Greppy 1: [ OK ] Stats.Greppy (0 ms) 1: [ RUN ] Stats.TabDelimited 1: [ OK ] Stats.TabDelimited (0 ms) 1: [ RUN ] Stats.TabDelimitedNoHeader 1: [ OK ] Stats.TabDelimitedNoHeader (0 ms) 1: [----------] 4 tests from Stats (0 ms total) 1: 1: [----------] Global test environment tear-down 1: [==========] 18 tests from 4 test suites ran. (0 ms total) 1: [ PASSED ] 18 tests. 1/1 Test #1: runUnitTests ..................... Passed 0.01 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 0.01 sec make[1]: Leaving directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/assembly-stats-1.0.1+ds' dh_install obj-x86_64-linux-gnu/assembly-stats usr/bin make[1]: Leaving directory '/build/reproducible-path/assembly-stats-1.0.1+ds' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'assembly-stats-dbgsym' in '../assembly-stats-dbgsym_1.0.1+ds-6_amd64.deb'. dpkg-deb: building package 'assembly-stats' in '../assembly-stats_1.0.1+ds-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../assembly-stats_1.0.1+ds-6_amd64.buildinfo dpkg-genchanges --build=binary -O../assembly-stats_1.0.1+ds-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/587631 and its subdirectories I: Current time: Fri Jun 6 12:15:41 -12 2025 I: pbuilder-time-stamp: 1749255341 Sat May 4 17:52:43 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom01-amd64.debian.net. Sat May 4 17:52:43 UTC 2024 I: Preparing to do remote build '2' on infom01-amd64.debian.net. Sat May 4 17:54:07 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. Sat May 4 17:54:08 UTC 2024 I: assembly-stats_1.0.1+ds-6_amd64.changes: Format: 1.8 Date: Wed, 16 Nov 2022 21:42:14 +0100 Source: assembly-stats Binary: assembly-stats assembly-stats-dbgsym Architecture: amd64 Version: 1.0.1+ds-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: assembly-stats - get assembly statistics from FASTA and FASTQ files Changes: assembly-stats (1.0.1+ds-6) unstable; urgency=medium . * Fix watch file * Standards-Version: 4.6.1 (routine-update) Checksums-Sha1: 1f21babb246cb408e231aad69ecd10cec5da8a2c 185592 assembly-stats-dbgsym_1.0.1+ds-6_amd64.deb b85a20e70f4d7cedc3cd4491b57aa2dbb88a004d 6224 assembly-stats_1.0.1+ds-6_amd64.buildinfo 973a38284fcfeed58fb191b415c8c18f80870e92 21948 assembly-stats_1.0.1+ds-6_amd64.deb Checksums-Sha256: bed1663e42eab75b7dd41cb65e328ca79d034430a0214621b62adb79345d6480 185592 assembly-stats-dbgsym_1.0.1+ds-6_amd64.deb 7e0d91efa57fc8fea2b2f006e084e84d12927aa3cc0abeb5d08a17960cb8212f 6224 assembly-stats_1.0.1+ds-6_amd64.buildinfo 702d27ba3787aee32e3ce96e27c463f026c5a9e52426448f9ecf0f77c339ce3c 21948 assembly-stats_1.0.1+ds-6_amd64.deb Files: 669e210179a47e50152c958570a3b2db 185592 debug optional assembly-stats-dbgsym_1.0.1+ds-6_amd64.deb a17401abf6d94555dbb7104dd47c3cf1 6224 science optional assembly-stats_1.0.1+ds-6_amd64.buildinfo 8531dcaa9912b88b4b1725fb3946f815 21948 science optional assembly-stats_1.0.1+ds-6_amd64.deb Sat May 4 17:54:09 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_34-9620.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.gImeiHFc/assembly-stats_1.0.1+ds-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.gImeiHFc/assembly-stats_1.0.1+ds-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.gImeiHFc/assembly-stats_1.0.1+ds-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.gImeiHFc/b1/assembly-stats_1.0.1+ds-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.gImeiHFc/b2/assembly-stats_1.0.1+ds-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.358s) 0.358s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.017s) 0.017s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 686ms CPU time consumed: 687ms Sat May 4 17:54:10 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Sat May 4 17:54:10 UTC 2024 I: assembly-stats from unstable built successfully and reproducibly on amd64. Sat May 4 17:54:11 UTC 2024 I: Submitting .buildinfo files to external archives: Sat May 4 17:54:11 UTC 2024 I: Submitting 8.0K b1/assembly-stats_1.0.1+ds-6_amd64.buildinfo.asc Sat May 4 17:54:12 UTC 2024 I: Submitting 8.0K b2/assembly-stats_1.0.1+ds-6_amd64.buildinfo.asc Sat May 4 17:54:14 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat May 4 17:54:14 UTC 2024 I: Done submitting .buildinfo files. Sat May 4 17:54:14 UTC 2024 I: Removing signed assembly-stats_1.0.1+ds-6_amd64.buildinfo.asc files: removed './b1/assembly-stats_1.0.1+ds-6_amd64.buildinfo.asc' removed './b2/assembly-stats_1.0.1+ds-6_amd64.buildinfo.asc'