Sun Apr 28 23:36:57 UTC 2024 I: starting to build unifrac/trixie/i386 on jenkins on '2024-04-28 23:36' Sun Apr 28 23:36:57 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_6/22755/console.log Sun Apr 28 23:36:57 UTC 2024 I: Downloading source for trixie/unifrac=1.3-2 --2024-04-28 23:36:57-- http://deb.debian.org/debian/pool/main/u/unifrac/unifrac_1.3-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2260 (2.2K) [text/prs.lines.tag] Saving to: ‘unifrac_1.3-2.dsc’ 0K .. 100% 300M=0s 2024-04-28 23:36:57 (300 MB/s) - ‘unifrac_1.3-2.dsc’ saved [2260/2260] Sun Apr 28 23:36:58 UTC 2024 I: unifrac_1.3-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: unifrac Binary: python3-unifrac Architecture: any Version: 1.3-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/biocore/unifrac Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/unifrac Vcs-Git: https://salsa.debian.org/med-team/unifrac.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: build-essential, python3-all Build-Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, python3-all-dev, python3-setuptools, python3-numpy, cython3, libhdf5-dev, hdf5-helpers, python3-h5py, python3-biom-format, python3-skbio (>= 0.5.8-3~) , python3-iow , libssu-dev (>= 1.4-2~) Package-List: python3-unifrac deb python optional arch=any Checksums-Sha1: ce9c8b95b5567503d21902912ac222f1e7f27b28 65918 unifrac_1.3.orig.tar.gz 84e74a3ba3a7e3a18dbbb43755ea0a67d5a4b759 7420 unifrac_1.3-2.debian.tar.xz Checksums-Sha256: e8cc37c3d5aaa31494c218df8a336eae135049d6840023d057da4fda8c4a4377 65918 unifrac_1.3.orig.tar.gz 085e70c90c853e2acb9c68c3a3e9a93fc0d484b6cc6702951d605d93a4274f8e 7420 unifrac_1.3-2.debian.tar.xz Files: 5b9f4c8ff4caf738771a7c467ce6e043 65918 unifrac_1.3.orig.tar.gz c334e6f7606533f5f50b74eec252624e 7420 unifrac_1.3-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmV/VeQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtG/XA//XzV7zZtIIX6zrx/7NetIFOt4ZFRU8lOc u50DwXd+KNI2OGHIhuBJuX5E4EVCkcUU5lkJfTgdAiayzWRko0Tfxg0R/JajZyzR HBUews5jA+MZjjzBCWmNIOL9So8R7h5yXxjCx3ghlVGpMuoe1BhAfrAC1RZqaV9U cJgmXVm36arxs9Cr11yqNr6dImd5fvn7hOk/e1B1/Feolk0Bl6c5rs0jGYnKLTbZ r8deZWwM14kAj8T+zLg4Tdt7z8qRC5Kb+l206jOJi/l/6t9icGiZJrdsLZWaqXtB 26yazXerhpjvDZT8TW5J+CA0RFaekGET2D0utGk8uol4PKxff3FXQnUbUzGDosZI JUCNa/s3RRAI3bkQ9V2P+6ylyHXM6chEKm3QbFsZBGEIXSagni8lOWiBozd/uYjA CEUcMUtz1quADYI+woHKRftO2C6FsAYesTvT0iYfIhvPPtkvhqkfGCkpcZo/Hn4T ZDvRUjvyxixCCd2rWfjvBqvDBFqMvgZhgvqLnKknSxX7ZMFmtYIphyiCIC5g5aLU +q7kxquVJRVmpPQBGxAfnVo8g/osPOFPZiiHRlJe/obKL5xRVvf2QLVPm7J4cn8G DctWahpHGFjZfCWExQpeK6lZqQvC/C1KV7X8kU6JrI+DKt/Kv4TvdM6vVTxFC9GW mt6Qu4ZLLB0= =dpW/ -----END PGP SIGNATURE----- Sun Apr 28 23:36:58 UTC 2024 I: Checking whether the package is not for us Sun Apr 28 23:36:58 UTC 2024 I: Starting 1st build on remote node ionos6-i386.debian.net. Sun Apr 28 23:36:58 UTC 2024 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Sun Apr 28 23:37:30 UTC 2024 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat May 31 18:00:01 -12 2025 I: pbuilder-time-stamp: 1748757601 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [unifrac_1.3-2.dsc] I: copying [./unifrac_1.3.orig.tar.gz] I: copying [./unifrac_1.3-2.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Dec 17 20:11:16 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./unifrac_1.3-2.dsc: no acceptable signature found dpkg-source: info: extracting unifrac in unifrac-1.3 dpkg-source: info: unpacking unifrac_1.3.orig.tar.gz dpkg-source: info: unpacking unifrac_1.3-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-check-for-pkg-version.patch dpkg-source: info: applying no_conda_prefix.patch dpkg-source: info: applying relax_test_conditions.patch dpkg-source: info: applying numpy.patch dpkg-source: info: applying no_cython_in_binary_package.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/40713/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='22697296683e4896b1136a342582c385' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='40713' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3yyP7OnO/pbuilderrc_puX7 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3yyP7OnO/b1 --logfile b1/build.log unifrac_1.3-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 26 17:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/40713/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, python3-all-dev, python3-setuptools, python3-numpy, cython3, libhdf5-dev, hdf5-helpers, python3-h5py, python3-biom-format, python3-skbio (>= 0.5.8-3~), python3-iow, libssu-dev (>= 1.4-2~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19884 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on hdf5-helpers; however: Package hdf5-helpers is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-biom-format; however: Package python3-biom-format is not installed. pbuilder-satisfydepends-dummy depends on python3-skbio (>= 0.5.8-3~); however: Package python3-skbio is not installed. pbuilder-satisfydepends-dummy depends on python3-iow; however: Package python3-iow is not installed. pbuilder-satisfydepends-dummy depends on libssu-dev (>= 1.4-2~); however: Package libssu-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 19.3 MB of archives. After unpacking 73.9 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: dh-sequence-python3 which is a virtual package, provided by: - dh-python (6.20240422), but it is not installable Depends: python3-all-dev but it is not installable Depends: python3-setuptools but it is not installable Depends: python3-numpy but it is not installable Depends: cython3 but it is not installable Depends: libhdf5-dev but it is not installable Depends: python3-h5py but it is not installable Depends: python3-biom-format which is a virtual package and is not provided by any available package Depends: python3-skbio (>= 0.5.8-3~) which is a virtual package and is not provided by any available package Depends: python3-iow which is a virtual package and is not provided by any available package Depends: libssu-dev (>= 1.4-2~) but it is not installable Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 19.3 MB of archives. After unpacking 73.9 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/40713 and its subdirectories Sun Apr 28 23:37:31 UTC 2024 W: No second build log, what happened? Sun Apr 28 23:37:31 UTC 2024 W: Downloading the build dependencies failed Sun Apr 28 23:37:31 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Sun Apr 28 23:37:31 UTC 2024 W: Network problems are automatically rescheduled after some hours.