Fri Oct 25 02:17:50 UTC 2024 I: starting to build seer/trixie/i386 on jenkins on '2024-10-25 02:17' Fri Oct 25 02:17:50 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_18/27820/console.log Fri Oct 25 02:17:50 UTC 2024 I: Downloading source for trixie/seer=1.1.4-8 --2024-10-25 02:17:50-- http://deb.debian.org/debian/pool/main/s/seer/seer_1.1.4-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2033 (2.0K) [text/prs.lines.tag] Saving to: ‘seer_1.1.4-8.dsc’ 0K . 100% 242M=0s 2024-10-25 02:17:50 (242 MB/s) - ‘seer_1.1.4-8.dsc’ saved [2033/2033] Fri Oct 25 02:17:50 UTC 2024 I: seer_1.1.4-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: seer Binary: seer Architecture: any Version: 1.1.4-8 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/johnlees/seer Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/seer Vcs-Git: https://salsa.debian.org/med-team/seer.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libarmadillo-dev, libdlib-dev, libhdf5-dev, libgzstream-dev, libboost-dev, libboost-program-options-dev Package-List: seer deb science optional arch=any Checksums-Sha1: 01aa93df82b6e563f5e06ae47592ae0d98dce2da 972155 seer_1.1.4.orig.tar.gz 5aa0a353c526b23aa829e7334114d8dc53db98b6 9428 seer_1.1.4-8.debian.tar.xz Checksums-Sha256: 96e55b9fe2cde089ff05bbcd55088832e90f44a968a81a8dca9f9cffa6faa9c1 972155 seer_1.1.4.orig.tar.gz da8005864a8263d365688589347dde52f8b3b1b8f14815ea2b217d4a517878a7 9428 seer_1.1.4-8.debian.tar.xz Files: e4b331eaf17819aabc545b032148d8c2 972155 seer_1.1.4.orig.tar.gz cdc4d5c7115c74ca5cac6707ab79c095 9428 seer_1.1.4-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEM8soQxPpC9J9y0UjYAMWptwndHYFAmajW6IACgkQYAMWptwn dHY7Sw/+LMOjwUDySwXEGK96jxofSYObOdZ6az9neFTRNYP2ewPbVjRUE8MLtbz9 1K5wQfi8yTKaEAcgsw2srI409p5HjBmkzkf+MYyfaMdeXltyukPKwVfyuV4jcpDz xXQHd8QFOlldv9NWjIrGR/iTdBhVsDwDTaHArQzOw784lnoFRG4UtHMeKniij1Vv d+c+CKsW9khqk0ZJTJIgfsMxgCfrPIwWOZl+UZBlBaJt5C3k4q9ybZur/6pRbhY9 yTdu130Wb+SE51awz+Xzjrd9HEdwvs0PaPVWcicu7XpS+4MoIKiQ77+PG9z2Y03m nJx+1/V21qsWvfy7hJstIvNFiURdWgbylp4GSp9Dd1jitq8U9XpF1VeakFP0ljL+ aNFhLtdbMxo+C/yDn5jAseLVUYTvCKFuY3k3txs1avDUPuI4Cf6D7dn6pdgXTcuo JBTehdE1CGW0Tnra/m4MxxIuWeMFfDBul4+hMK+mFd2Zfze8ogTNPACw1d2d12ud obUK2vi+RzXH8Jn59PhuT2H3ZCQckZXUr7BJKhBB/k0X9JoBjAmtQMkm8n0fxo80 3Ch4hCMEVrxiMspu6LPyici44JwMMP+rdzyfibWb0YkZH5Jv51LC9PCrbrmMhlLN eh4GwwmIoPovbvEwnhWigZBnXfYX6Hw+qj47+DHTVZKk8YtbD+U= =wA1R -----END PGP SIGNATURE----- Fri Oct 25 02:17:50 UTC 2024 I: Checking whether the package is not for us Fri Oct 25 02:17:50 UTC 2024 I: Starting 1st build on remote node infom08-i386.debian.net. Fri Oct 25 02:17:50 UTC 2024 I: Preparing to do remote build '1' on infom08-i386.debian.net. Fri Oct 25 02:19:25 UTC 2024 I: Deleting $TMPDIR on infom08-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Nov 26 20:40:50 -12 2025 I: pbuilder-time-stamp: 1764232850 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [seer_1.1.4-8.dsc] I: copying [./seer_1.1.4.orig.tar.gz] I: copying [./seer_1.1.4-8.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Jul 26 08:17:38 2024 gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./seer_1.1.4-8.dsc: no acceptable signature found dpkg-source: info: extracting seer in seer-1.1.4 dpkg-source: info: unpacking seer_1.1.4.orig.tar.gz dpkg-source: info: unpacking seer_1.1.4-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_lib_location.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying gcc11.patch dpkg-source: info: applying typos.patch dpkg-source: info: applying cpp14.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/11859/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='b6daf74c526942a2b310688854c9c732' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='11859' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iphZJLLc/pbuilderrc_rLNo --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iphZJLLc/b1 --logfile b1/build.log seer_1.1.4-8.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom08-i386 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/11859/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libarmadillo-dev, libdlib-dev, libhdf5-dev, libgzstream-dev, libboost-dev, libboost-program-options-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 21867 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libarmadillo-dev; however: Package libarmadillo-dev is not installed. pbuilder-satisfydepends-dummy depends on libdlib-dev; however: Package libdlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libgzstream-dev; however: Package libgzstream-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarmadillo-dev{a} libarmadillo14{a} libarpack2-dev{a} libarpack2t64{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdebhelper-perl{a} libdlib-data{a} libdlib-dev{a} libdlib19.2{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgbm1{a} libgfortran5{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgzstream-dev{a} libgzstream0{a} libhdf5-103-1t64{a} libhdf5-cpp-103-1t64{a} libhdf5-dev{a} libhdf5-fortran-102t64{a} libhdf5-hl-100t64{a} libhdf5-hl-cpp-100t64{a} libhdf5-hl-fortran-100t64{a} libhwloc15{a} libicu72{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnsl2{a} libopencv-core-dev{a} libopencv-core406t64{a} libp11-kit-dev{a} libpciaccess0{a} libpipeline1{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl-dev{a} libpsl5t64{a} libpython3-dev{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsqlite3-dev{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsuperlu-dev{a} libsuperlu6{a} libsuperlu7{a} libsz2{a} libtasn1-6-dev{a} libtbb-dev{a} libtbb12{a} libtbbbind-2-5{a} libtbbmalloc2{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunbound8{a} libvulkan1{a} libwayland-server0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxml2{a} libxshmfence1{a} libxxf86vm1{a} libz3-4{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} netbase{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} pybind11-dev{a} readline-common{a} sensible-utils{a} tzdata{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libeigen3-dev libhwloc-plugins libldap-common libltdl-dev libmail-sendmail-perl libpng-tools libsasl2-modules libtasn1-doc lynx mesa-vulkan-drivers publicsuffix wget 0 packages upgraded, 174 newly installed, 0 to remove and 0 not upgraded. Need to get 198 MB of archives. After unpacking 771 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 tzdata all 2024a-4 [255 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-5 [69.3 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3 [42.9 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-9 [102 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-2 [723 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 26 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.191-2 [194 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5 [9550 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.1 [733 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 hdf5-helpers i386 1.10.10+repack-4 [23.5 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libaec0 i386 1.1.3-1 [24.5 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libsz2 i386 1.1.3-1 [7824 B] Get: 37 http://deb.debian.org/debian trixie/main i386 libaec-dev i386 1.1.3-1 [22.4 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.0-3 [140 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14.2.0-6 [735 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.0-3 [2167 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libarpack2t64 i386 3.9.1-1.1+b1 [101 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libsuperlu6 i386 6.0.1+dfsg1-1+b1 [172 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libarmadillo14 i386 1:14.0.1+dfsg-2 [107 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libblas-dev i386 3.12.0-3 [152 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 liblapack-dev i386 3.12.0-3 [4400 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libarpack2-dev i386 3.9.1-1.1+b1 [120 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b4 [309 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.1-1 [23.1 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] Get: 52 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3+b1 [200 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.63.0-1 [82.7 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 libcurl4t64 i386 8.10.1-2 [391 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libhdf5-103-1t64 i386 1.10.10+repack-4 [1186 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 libhdf5-fortran-102t64 i386 1.10.10+repack-4 [98.1 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 libhdf5-hl-100t64 i386 1.10.10+repack-4 [76.0 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libhdf5-hl-fortran-100t64 i386 1.10.10+repack-4 [41.9 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 libhdf5-cpp-103-1t64 i386 1.10.10+repack-4 [137 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libhdf5-hl-cpp-100t64 i386 1.10.10+repack-4 [21.9 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1 [915 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo i386 1:2.1.5-3 [169 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo-dev i386 1:2.1.5-3 [303 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 libjpeg-dev i386 1:2.1.5-3 [71.9 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 libbrotli-dev i386 1.1.0-2+b4 [313 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 libidn2-dev i386 2.3.7-2 [125 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 libpkgconf3 i386 1.8.1-4 [38.4 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 pkgconf-bin i386 1.8.1-4 [30.6 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 pkgconf i386 1.8.1-4 [26.2 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 libnghttp2-dev i386 1.63.0-1 [123 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 libpsl-dev i386 0.21.2-1.1 [78.2 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 libgmpxx4ldbl i386 2:6.3.0+dfsg-2+b1 [330 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 libgmp-dev i386 2:6.3.0+dfsg-2+b1 [659 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 libevent-2.1-7t64 i386 2.1.12-stable-10 [194 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 libunbound8 i386 1.22.0-1 [632 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 libgnutls-dane0t64 i386 3.8.6-2 [439 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 libgnutls-openssl27t64 i386 3.8.6-2 [439 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 libp11-kit-dev i386 0.25.5-2 [208 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 libtasn1-6-dev i386 4.19.0-3+b2 [101 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 nettle-dev i386 3.10-1 [1333 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 libgnutls28-dev i386 3.8.6-2 [1444 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 librtmp-dev i386 2.4+20151223.gitfa8646d.1-2+b4 [72.1 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 libssl-dev i386 3.3.2-1 [2790 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 libssh2-1-dev i386 1.11.1-1 [407 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 libzstd-dev i386 1.5.6+dfsg-1 [352 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 libcurl4-openssl-dev i386 8.10.1-2 [519 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 libhdf5-dev i386 1.10.10+repack-4 [2783 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 libsuperlu7 i386 7.0.0+dfsg1-2 [175 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 libsuperlu-dev i386 7.0.0+dfsg1-2 [21.9 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 libarmadillo-dev i386 1:14.0.1+dfsg-2 [413 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 libboost1.83-dev i386 1.83.0-3.2 [10.6 MB] Get: 99 http://deb.debian.org/debian trixie/main i386 libboost-dev i386 1.83.0.2+b2 [3840 B] Get: 100 http://deb.debian.org/debian trixie/main i386 libboost-program-options1.83.0 i386 1.83.0-3.2 [360 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 libboost-program-options1.83-dev i386 1.83.0-3.2 [390 kB] Get: 102 http://deb.debian.org/debian trixie/main i386 libboost-program-options-dev i386 1.83.0.2+b2 [3616 B] Get: 103 http://deb.debian.org/debian trixie/main i386 libdlib-data all 19.24.6+dfsg-1 [63.4 MB] Get: 104 http://deb.debian.org/debian trixie/main i386 libpng16-16t64 i386 1.6.44-2 [288 kB] Get: 105 http://deb.debian.org/debian trixie/main i386 libdlib19.2 i386 19.24.6+dfsg-1 [3849 kB] Get: 106 http://deb.debian.org/debian trixie/main i386 libglvnd0 i386 1.7.0-1+b1 [44.4 kB] Get: 107 http://deb.debian.org/debian trixie/main i386 libxau6 i386 1:1.0.9-1+b1 [18.5 kB] Get: 108 http://deb.debian.org/debian trixie/main i386 libxdmcp6 i386 1:1.1.2-3+b1 [24.8 kB] Get: 109 http://deb.debian.org/debian trixie/main i386 libxcb1 i386 1.17.0-2 [148 kB] Get: 110 http://deb.debian.org/debian trixie/main i386 libx11-data all 2:1.8.7-1 [328 kB] Get: 111 http://deb.debian.org/debian trixie/main i386 libx11-6 i386 2:1.8.7-1+b1 [822 kB] Get: 112 http://deb.debian.org/debian trixie/main i386 libdrm-common all 2.4.123-1 [8084 B] Get: 113 http://deb.debian.org/debian trixie/main i386 libdrm2 i386 2.4.123-1 [41.8 kB] Get: 114 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.3-1 [107 kB] Get: 115 http://deb.debian.org/debian trixie/main i386 libglapi-mesa i386 24.2.4-1 [37.8 kB] Get: 116 http://deb.debian.org/debian trixie/main i386 libx11-xcb1 i386 2:1.8.7-1+b1 [232 kB] Get: 117 http://deb.debian.org/debian trixie/main i386 libxcb-dri2-0 i386 1.17.0-2 [107 kB] Get: 118 http://deb.debian.org/debian trixie/main i386 libxcb-dri3-0 i386 1.17.0-2 [107 kB] Get: 119 http://deb.debian.org/debian trixie/main i386 libxcb-glx0 i386 1.17.0-2 [123 kB] Get: 120 http://deb.debian.org/debian trixie/main i386 libxcb-present0 i386 1.17.0-2 [105 kB] Get: 121 http://deb.debian.org/debian trixie/main i386 libxcb-randr0 i386 1.17.0-2 [118 kB] Get: 122 http://deb.debian.org/debian trixie/main i386 libxcb-shm0 i386 1.17.0-2 [105 kB] Get: 123 http://deb.debian.org/debian trixie/main i386 libxcb-sync1 i386 1.17.0-2 [109 kB] Get: 124 http://deb.debian.org/debian trixie/main i386 libxcb-xfixes0 i386 1.17.0-2 [109 kB] Get: 125 http://deb.debian.org/debian trixie/main i386 libxext6 i386 2:1.3.4-1+b2 [52.6 kB] Get: 126 http://deb.debian.org/debian trixie/main i386 libxfixes3 i386 1:6.0.0-2+b1 [20.7 kB] Get: 127 http://deb.debian.org/debian trixie/main i386 libxshmfence1 i386 1.3-1+b1 [9028 B] Get: 128 http://deb.debian.org/debian trixie/main i386 libxxf86vm1 i386 1:1.1.4-1+b3 [20.1 kB] Get: 129 http://deb.debian.org/debian trixie/main i386 libdrm-amdgpu1 i386 2.4.123-1 [25.0 kB] Get: 130 http://deb.debian.org/debian trixie/main i386 libpciaccess0 i386 0.17-3+b1 [53.8 kB] Get: 131 http://deb.debian.org/debian trixie/main i386 libdrm-intel1 i386 2.4.123-1 [66.8 kB] Get: 132 http://deb.debian.org/debian trixie/main i386 libdrm-radeon1 i386 2.4.123-1 [23.0 kB] Get: 133 http://deb.debian.org/debian trixie/main i386 libedit2 i386 3.1-20240808-1 [98.0 kB] Get: 134 http://deb.debian.org/debian trixie/main i386 libz3-4 i386 4.8.12-3.1+b2 [7989 kB] Get: 135 http://deb.debian.org/debian trixie/main i386 libllvm19 i386 1:19.1.2-1 [30.4 MB] Get: 136 http://deb.debian.org/debian trixie/main i386 libsensors-config all 1:3.6.0-10 [14.6 kB] Get: 137 http://deb.debian.org/debian trixie/main i386 libsensors5 i386 1:3.6.0-10 [35.5 kB] Get: 138 http://deb.debian.org/debian trixie/main i386 mesa-libgallium i386 24.2.4-1 [9401 kB] Get: 139 http://deb.debian.org/debian trixie/main i386 libvulkan1 i386 1.3.296.0-1 [136 kB] Get: 140 http://deb.debian.org/debian trixie/main i386 libwayland-server0 i386 1.23.0-1 [35.5 kB] Get: 141 http://deb.debian.org/debian trixie/main i386 libgbm1 i386 24.2.4-1 [43.8 kB] Get: 142 http://deb.debian.org/debian trixie/main i386 libgl1-mesa-dri i386 24.2.4-1 [42.4 kB] Get: 143 http://deb.debian.org/debian trixie/main i386 libglx-mesa0 i386 24.2.4-1 [160 kB] Get: 144 http://deb.debian.org/debian trixie/main i386 libglx0 i386 1.7.0-1+b1 [38.0 kB] Get: 145 http://deb.debian.org/debian trixie/main i386 libtbbmalloc2 i386 2021.12.0-1 [48.8 kB] Get: 146 http://deb.debian.org/debian trixie/main i386 libhwloc15 i386 2.11.2-1 [177 kB] Get: 147 http://deb.debian.org/debian trixie/main i386 libtbbbind-2-5 i386 2021.12.0-1 [14.5 kB] Get: 148 http://deb.debian.org/debian trixie/main i386 libtbb12 i386 2021.12.0-1 [89.9 kB] Get: 149 http://deb.debian.org/debian trixie/main i386 libopencv-core406t64 i386 4.6.0+dfsg-14 [1090 kB] Get: 150 http://deb.debian.org/debian trixie/main i386 libtbb-dev i386 2021.12.0-1 [193 kB] Get: 151 http://deb.debian.org/debian trixie/main i386 libopencv-core-dev i386 4.6.0+dfsg-14 [1815 kB] Get: 152 http://deb.debian.org/debian trixie/main i386 libpng-dev i386 1.6.44-2 [373 kB] Get: 153 http://deb.debian.org/debian trixie/main i386 libsqlite3-dev i386 3.46.1-1 [1193 kB] Get: 154 http://deb.debian.org/debian trixie/main i386 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 155 http://deb.debian.org/debian trixie/main i386 x11proto-dev all 2024.1-1 [603 kB] Get: 156 http://deb.debian.org/debian trixie/main i386 libxau-dev i386 1:1.0.9-1+b1 [21.6 kB] Get: 157 http://deb.debian.org/debian trixie/main i386 libxdmcp-dev i386 1:1.1.2-3+b1 [41.5 kB] Get: 158 http://deb.debian.org/debian trixie/main i386 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 159 http://deb.debian.org/debian trixie/main i386 libxcb1-dev i386 1.17.0-2 [186 kB] Get: 160 http://deb.debian.org/debian trixie/main i386 libx11-dev i386 2:1.8.7-1+b1 [904 kB] Get: 161 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.6-1 [813 kB] Get: 162 http://deb.debian.org/debian trixie/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 163 http://deb.debian.org/debian trixie/main i386 libtirpc3t64 i386 1.3.4+ds-1.3 [90.2 kB] Get: 164 http://deb.debian.org/debian trixie/main i386 libnsl2 i386 1.3.0-3+b2 [42.4 kB] Get: 165 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-5 [173 kB] Get: 166 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.6-1 [1961 kB] Get: 167 http://deb.debian.org/debian trixie/main i386 libpython3.12t64 i386 3.12.6-1 [2168 kB] Get: 168 http://deb.debian.org/debian trixie/main i386 libexpat1-dev i386 2.6.3-1 [164 kB] Get: 169 http://deb.debian.org/debian trixie/main i386 libpython3.12-dev i386 3.12.6-1 [5284 kB] Get: 170 http://deb.debian.org/debian trixie/main i386 libpython3-dev i386 3.12.6-1 [9956 B] Get: 171 http://deb.debian.org/debian trixie/main i386 pybind11-dev all 2.13.6-1 [204 kB] Get: 172 http://deb.debian.org/debian trixie/main i386 libdlib-dev i386 19.24.6+dfsg-1 [2234 kB] Get: 173 http://deb.debian.org/debian trixie/main i386 libgzstream0 i386 1.5+git20171107.9a20658-2 [7384 B] Get: 174 http://deb.debian.org/debian trixie/main i386 libgzstream-dev i386 1.5+git20171107.9a20658-2 [7576 B] Fetched 198 MB in 5s (41.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21867 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package netbase. Preparing to unpack .../001-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../002-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../008-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.2-9_i386.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../011-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package media-types. Preparing to unpack .../013-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../019-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../020-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../021-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../022-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../023-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../024-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../025-libelf1t64_0.191-2_i386.deb ... Unpacking libelf1t64:i386 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../026-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../027-libicu72_72.1-5_i386.deb ... Unpacking libicu72:i386 (72.1-5) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../028-libxml2_2.12.7+dfsg+really2.9.14-0.1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../029-gettext_0.22.5-2_i386.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../030-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../031-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../032-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../033-hdf5-helpers_1.10.10+repack-4_i386.deb ... Unpacking hdf5-helpers (1.10.10+repack-4) ... Selecting previously unselected package libaec0:i386. Preparing to unpack .../034-libaec0_1.1.3-1_i386.deb ... Unpacking libaec0:i386 (1.1.3-1) ... Selecting previously unselected package libsz2:i386. Preparing to unpack .../035-libsz2_1.1.3-1_i386.deb ... Unpacking libsz2:i386 (1.1.3-1) ... Selecting previously unselected package libaec-dev:i386. Preparing to unpack .../036-libaec-dev_1.1.3-1_i386.deb ... Unpacking libaec-dev:i386 (1.1.3-1) ... Selecting previously unselected package libblas3:i386. Preparing to unpack .../037-libblas3_3.12.0-3_i386.deb ... Unpacking libblas3:i386 (3.12.0-3) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../038-libgfortran5_14.2.0-6_i386.deb ... Unpacking libgfortran5:i386 (14.2.0-6) ... Selecting previously unselected package liblapack3:i386. Preparing to unpack .../039-liblapack3_3.12.0-3_i386.deb ... Unpacking liblapack3:i386 (3.12.0-3) ... Selecting previously unselected package libarpack2t64:i386. Preparing to unpack .../040-libarpack2t64_3.9.1-1.1+b1_i386.deb ... Unpacking libarpack2t64:i386 (3.9.1-1.1+b1) ... Selecting previously unselected package libsuperlu6:i386. Preparing to unpack .../041-libsuperlu6_6.0.1+dfsg1-1+b1_i386.deb ... Unpacking libsuperlu6:i386 (6.0.1+dfsg1-1+b1) ... Selecting previously unselected package libarmadillo14. Preparing to unpack .../042-libarmadillo14_1%3a14.0.1+dfsg-2_i386.deb ... Unpacking libarmadillo14 (1:14.0.1+dfsg-2) ... Selecting previously unselected package libblas-dev:i386. Preparing to unpack .../043-libblas-dev_3.12.0-3_i386.deb ... Unpacking libblas-dev:i386 (3.12.0-3) ... Selecting previously unselected package liblapack-dev:i386. Preparing to unpack .../044-liblapack-dev_3.12.0-3_i386.deb ... Unpacking liblapack-dev:i386 (3.12.0-3) ... Selecting previously unselected package libarpack2-dev:i386. Preparing to unpack .../045-libarpack2-dev_3.9.1-1.1+b1_i386.deb ... Unpacking libarpack2-dev:i386 (3.9.1-1.1+b1) ... 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Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3 to /lib/i386-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3.0.0 to /lib/i386-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:i386 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:i386. Preparing to unpack .../163-libnsl2_1.3.0-3+b2_i386.deb ... Unpacking libnsl2:i386 (1.3.0-3+b2) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../164-libreadline8t64_8.2-5_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:i386. Preparing to unpack .../165-libpython3.12-stdlib_3.12.6-1_i386.deb ... Unpacking libpython3.12-stdlib:i386 (3.12.6-1) ... Selecting previously unselected package libpython3.12t64:i386. Preparing to unpack .../166-libpython3.12t64_3.12.6-1_i386.deb ... Unpacking libpython3.12t64:i386 (3.12.6-1) ... 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Setting up bsdextrautils (2.40.2-9) ... Setting up hdf5-helpers (1.10.10+repack-4) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglvnd0:i386 (1.7.0-1+b1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libxcb-glx0:i386 (1.17.0-2) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:i386 (1.1.0-2+b4) ... Setting up libedit2:i386 (3.1-20240808-1) ... Setting up libmagic1t64:i386 (1:5.45-3) ... Setting up libboost-program-options1.83-dev:i386 (1.83.0-3.2) ... Setting up libpython3.12-minimal:i386 (3.12.6-1) ... Setting up libsensors-config (1:3.6.0-10) ... Setting up libpsl5t64:i386 (0.21.2-1.1) ... Setting up libnghttp2-14:i386 (1.63.0-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libevent-2.1-7t64:i386 (2.1.12-stable-10) ... Setting up libxcb-shm0:i386 (1.17.0-2) ... Setting up libcom-err2:i386 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libaec0:i386 (1.1.3-1) ... Setting up libelf1t64:i386 (0.191-2) ... Setting up libpsl-dev:i386 (0.21.2-1.1) ... Setting up libkrb5support0:i386 (1.21.3-3) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Nov 27 08:41:24 UTC 2025. Universal Time is now: Thu Nov 27 08:41:24 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:i386 (1.17.0-2) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:i386 (4.8.12-3.1+b2) ... Setting up libblas3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libunbound8:i386 (1.22.0-1) ... Setting up libpkgconf3:i386 (1.8.1-4) ... Setting up libgmpxx4ldbl:i386 (2:6.3.0+dfsg-2+b1) ... Setting up libexpat1-dev:i386 (2.6.3-1) ... Setting up libjpeg62-turbo:i386 (1:2.1.5-3) ... Setting up libgnutls-dane0t64:i386 (3.8.6-2) ... Setting up libsqlite3-dev:i386 (3.46.1-1) ... Setting up libboost-program-options-dev:i386 (1.83.0.2+b2) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjpeg62-turbo-dev:i386 (1:2.1.5-3) ... Setting up libxcb-sync1:i386 (1.17.0-2) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libssl-dev:i386 (3.3.2-1) ... Setting up libpng16-16t64:i386 (1.6.44-2) ... Setting up libhwloc15:i386 (2.11.2-1) ... Setting up autopoint (0.22.5-2) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libsensors5:i386 (1:3.6.0-10) ... Setting up libk5crypto3:i386 (1.21.3-3) ... Setting up libidn2-dev:i386 (2.3.7-2) ... Setting up libglapi-mesa:i386 (24.2.4-1) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-8) ... Setting up libgfortran5:i386 (14.2.0-6) ... Setting up libvulkan1:i386 (1.3.296.0-1) ... Setting up autoconf (2.72-3) ... 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Setting up libblas-dev:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up libsz2:i386 (1.1.3-1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libxcb-dri3-0:i386 (1.17.0-2) ... Setting up libllvm19:i386 (1:19.1.2-1) ... Setting up libx11-xcb1:i386 (2:1.8.7-1+b1) ... Setting up liblapack3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libarpack2t64:i386 (3.9.1-1.1+b1) ... Setting up libgmp-dev:i386 (2:6.3.0+dfsg-2+b1) ... Setting up libxau-dev:i386 (1:1.0.9-1+b1) ... Setting up nettle-dev:i386 (3.10-1) ... Setting up libtool (2.4.7-7) ... Setting up libpng-dev:i386 (1.6.44-2) ... Setting up libaec-dev:i386 (1.1.3-1) ... Setting up libjpeg-dev:i386 (1:2.1.5-3) ... Setting up libxext6:i386 (2:1.3.4-1+b2) ... Setting up libsuperlu6:i386 (6.0.1+dfsg1-1+b1) ... Setting up libldap-2.5-0:i386 (2.5.18+dfsg-3+b1) ... Setting up libsuperlu7:i386 (7.0.0+dfsg1-2) ... Setting up pkgconf:i386 (1.8.1-4) ... Setting up libxxf86vm1:i386 (1:1.1.4-1+b3) ... Setting up libtbbbind-2-5:i386 (2021.12.0-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libdlib19.2:i386 (19.24.6+dfsg-1) ... Setting up libgzstream-dev:i386 (1.5+git20171107.9a20658-2) ... Setting up dh-autoreconf (20) ... Setting up libxdmcp-dev:i386 (1:1.1.2-3+b1) ... Setting up libxfixes3:i386 (1:6.0.0-2+b1) ... Setting up liblapack-dev:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up libgssapi-krb5-2:i386 (1.21.3-3) ... Setting up libssh2-1-dev:i386 (1.11.1-1) ... Setting up libreadline8t64:i386 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libdrm2:i386 (2.4.123-1) ... Setting up groff-base (1.23.0-5) ... Setting up libarmadillo14 (1:14.0.1+dfsg-2) ... Setting up libsuperlu-dev:i386 (7.0.0+dfsg1-2) ... Setting up libdrm-amdgpu1:i386 (2.4.123-1) ... Setting up libgnutls28-dev:i386 (3.8.6-2) ... Setting up libnghttp2-dev:i386 (1.63.0-1) ... Setting up libarpack2-dev:i386 (3.9.1-1.1+b1) ... Setting up libxcb1-dev:i386 (1.17.0-2) ... Setting up libcurl4t64:i386 (8.10.1-2) ... Setting up libtirpc3t64:i386 (1.3.4+ds-1.3) ... Setting up libdrm-radeon1:i386 (2.4.123-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libdrm-intel1:i386 (2.4.123-1) ... Setting up libx11-dev:i386 (2:1.8.7-1+b1) ... Setting up libtbb12:i386 (2021.12.0-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp-dev:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libnsl2:i386 (1.3.0-3+b2) ... Setting up libtbb-dev:i386 (2021.12.0-1) ... Setting up libhdf5-103-1t64:i386 (1.10.10+repack-4) ... Setting up libhdf5-hl-100t64:i386 (1.10.10+repack-4) ... Setting up mesa-libgallium:i386 (24.2.4-1) ... Setting up libpython3.12-stdlib:i386 (3.12.6-1) ... Setting up libgbm1:i386 (24.2.4-1) ... Setting up libhdf5-cpp-103-1t64:i386 (1.10.10+repack-4) ... Setting up libgl1-mesa-dri:i386 (24.2.4-1) ... Setting up libhdf5-fortran-102t64:i386 (1.10.10+repack-4) ... Setting up debhelper (13.20) ... Setting up libpython3.12t64:i386 (3.12.6-1) ... Setting up libcurl4-openssl-dev:i386 (8.10.1-2) ... Setting up libhdf5-hl-cpp-100t64:i386 (1.10.10+repack-4) ... Setting up libglx-mesa0:i386 (24.2.4-1) ... Setting up libglx0:i386 (1.7.0-1+b1) ... Setting up libhdf5-hl-fortran-100t64:i386 (1.10.10+repack-4) ... Setting up libpython3.12-dev:i386 (3.12.6-1) ... Setting up libhdf5-dev (1.10.10+repack-4) ... update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libopencv-core406t64:i386 (4.6.0+dfsg-14) ... Setting up libpython3-dev:i386 (3.12.6-1) ... Setting up pybind11-dev (2.13.6-1) ... Setting up libarmadillo-dev (1:14.0.1+dfsg-2) ... Setting up libopencv-core-dev:i386 (4.6.0+dfsg-14) ... Setting up libdlib-dev:i386 (19.24.6+dfsg-1) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/seer-1.1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seer_1.1.4-8_source.changes dpkg-buildpackage: info: source package seer dpkg-buildpackage: info: source version 1.1.4-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pierre Gruet dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_auto_clean make -j6 clean make[1]: Entering directory '/build/reproducible-path/seer-1.1.4' cd src && make clean make[2]: Entering directory '/build/reproducible-path/seer-1.1.4/src' rm -f *.o ~* seer kmds map_back combineKmers filter_seer make[2]: Leaving directory '/build/reproducible-path/seer-1.1.4/src' cd test && make clean make[2]: Entering directory '/build/reproducible-path/seer-1.1.4/test' rm -f *.o ~* tests_passed make[2]: Leaving directory '/build/reproducible-path/seer-1.1.4/test' make[1]: Leaving directory '/build/reproducible-path/seer-1.1.4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/seer-1.1.4' dh_auto_build -- LDFLAGS+=-L/usr/lib/i386-linux-gnu/hdf5/serial make -j6 "INSTALL=install --strip-program=true" LDFLAGS\+=-L/usr/lib/i386-linux-gnu/hdf5/serial make[2]: Entering directory '/build/reproducible-path/seer-1.1.4' cd src && make all make[3]: Entering directory '/build/reproducible-path/seer-1.1.4/src' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o sample.o sample.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o significant_kmer.o significant_kmer.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmer.o kmer.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o covar.o covar.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerCommon.o seerCommon.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerErr.o seerErr.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerIO.o seerIO.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerBasicFilter.o seerBasicFilter.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerMain.o seerMain.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerCmdLine.o seerCmdLine.cpp seerCommon.cpp: In function 'arma::vec dlib_to_arma(const column_vector&)': seerCommon.cpp:174:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'long int' [-Wsign-compare] 174 | for (unsigned int i = 0; i < dlib_vec.nr(); ++i) | ~~^~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerStats.o seerStats.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerContinuousAssoc.o seerContinuousAssoc.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerBinaryAssoc.o seerBinaryAssoc.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o logitFunction.o logitFunction.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o linearFunction.o linearFunction.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmdsMain.o kmdsMain.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmdsStruct.o kmdsStruct.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmdsCmdLine.o kmdsCmdLine.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o fasta.o fasta.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o mapMain.o mapMain.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o mapCmdLine.o mapCmdLine.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o combineInit.o combineInit.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o combineCmdLine.o combineCmdLine.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o combineKmers.o combineKmers.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o filter_seer.o filter_seer.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o filterCmdLine.o filterCmdLine.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial sample.o significant_kmer.o kmer.o covar.o seerCommon.o seerErr.o seerIO.o seerBasicFilter.o seerMain.o seerCmdLine.o seerStats.o seerContinuousAssoc.o seerBinaryAssoc.o logitFunction.o linearFunction.o -lhdf5 -lgzstream -lz -larmadillo -lboost_program_options -llapack -lblas -lpthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial -o seer g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial fasta.o significant_kmer.o mapMain.o mapCmdLine.o -lboost_program_options -lpthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial -o map_back g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial combineInit.o combineCmdLine.o combineKmers.o -lgzstream -lz -lboost_program_options -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial -o combineKmers g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial significant_kmer.o filter_seer.o filterCmdLine.o -lboost_program_options -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial -o filter_seer g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial sample.o significant_kmer.o kmer.o covar.o seerCommon.o seerErr.o seerIO.o seerBasicFilter.o kmdsMain.o kmdsStruct.o kmdsCmdLine.o -lhdf5 -lgzstream -lz -larmadillo -lboost_program_options -llapack -lblas -lpthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial -o kmds make[3]: Leaving directory '/build/reproducible-path/seer-1.1.4/src' make[2]: Leaving directory '/build/reproducible-path/seer-1.1.4' make[1]: Leaving directory '/build/reproducible-path/seer-1.1.4' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/seer-1.1.4' if dh_auto_test ; then echo Test passed ; else echo '****************************** TEST FAILED. Please contact upstream *******************************' ; fi make -j6 test make[2]: Entering directory '/build/reproducible-path/seer-1.1.4' cd src && make all make[3]: Entering directory '/build/reproducible-path/seer-1.1.4/src' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/seer-1.1.4/src' cd test && make test make[3]: Entering directory '/build/reproducible-path/seer-1.1.4/test' ./run_test.pl && touch tests_passed PASSED test 1, basic filters PASSED test 2, binary phenotype assocation PASSED test 3, print output PASSED test 4, continuous phenotype assocation PASSED test 5, assocation with population structure PASSED test 6, assocation with covariates PASSED test 7, filter output PASSED test 8, map k-mers make[3]: Leaving directory '/build/reproducible-path/seer-1.1.4/test' make[2]: Leaving directory '/build/reproducible-path/seer-1.1.4' Test passed make[1]: Leaving directory '/build/reproducible-path/seer-1.1.4' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/seer-1.1.4' dh_auto_install -- PREFIX=/build/reproducible-path/seer-1.1.4/debian/seer/usr make -j6 install DESTDIR=/build/reproducible-path/seer-1.1.4/debian/seer AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=/build/reproducible-path/seer-1.1.4/debian/seer/usr make[2]: Entering directory '/build/reproducible-path/seer-1.1.4' cd src && make all make[3]: Entering directory '/build/reproducible-path/seer-1.1.4/src' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/seer-1.1.4/src' cd src && make install make[3]: Entering directory '/build/reproducible-path/seer-1.1.4/src' install -d /build/reproducible-path/seer-1.1.4/debian/seer/usr/bin install seer kmds map_back combineKmers filter_seer /build/reproducible-path/seer-1.1.4/debian/seer/usr/bin make[3]: Leaving directory '/build/reproducible-path/seer-1.1.4/src' make[2]: Leaving directory '/build/reproducible-path/seer-1.1.4' for pl in scripts/*.pl ; do \ plbase=`basename ${pl} .pl` ; \ sed "s+Usage: ./${plbase}.pl+Usage: ${plbase}+" ${pl} > /build/reproducible-path/seer-1.1.4/debian/seer/usr/bin/${plbase} ; \ done # Fix broken usage hint: sed -i "s+Usage: ./hits_to_matrix.pl+Usage: reformat_output+" /build/reproducible-path/seer-1.1.4/debian/seer/usr/bin/reformat_output make[1]: Leaving directory '/build/reproducible-path/seer-1.1.4' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/seer-1.1.4' dh_fixperms find debian -name Makefile -exec chmod -x \{\} \; find debian -name "*.fa" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/seer-1.1.4' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/seer/usr/bin/combineKmers was not linked against libz.so.1 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'seer-dbgsym' in '../seer-dbgsym_1.1.4-8_i386.deb'. dpkg-deb: building package 'seer' in '../seer_1.1.4-8_i386.deb'. dpkg-genbuildinfo --build=binary -O../seer_1.1.4-8_i386.buildinfo dpkg-genchanges --build=binary -O../seer_1.1.4-8_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/11859 and its subdirectories I: Current time: Wed Nov 26 20:42:21 -12 2025 I: pbuilder-time-stamp: 1764232941 Fri Oct 25 02:19:26 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom07-i386.debian.net. Fri Oct 25 02:19:26 UTC 2024 I: Preparing to do remote build '2' on infom07-i386.debian.net. Fri Oct 25 02:21:59 UTC 2024 I: Deleting $TMPDIR on infom07-i386.debian.net. Fri Oct 25 02:22:00 UTC 2024 I: seer_1.1.4-8_i386.changes: Format: 1.8 Date: Fri, 26 Jul 2024 09:57:43 +0200 Source: seer Binary: seer seer-dbgsym Architecture: i386 Version: 1.1.4-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Pierre Gruet Description: seer - genomic sequence element (kmer) enrichment analysis Closes: 1074123 Changes: seer (1.1.4-8) unstable; urgency=medium . * Team upload * Building with --std=c++14 to comply with newest dlib (Closes: #1074123) Checksums-Sha1: bc1750bf509df4bccdf12d39c9528c9291cc97fd 8874696 seer-dbgsym_1.1.4-8_i386.deb ff531d5aa6db1108aba7150d1a6b9a82b14d124b 9623 seer_1.1.4-8_i386.buildinfo 5c2689ac56e180de58bcb73c02b1ba32f8a71e1f 1221528 seer_1.1.4-8_i386.deb Checksums-Sha256: 7196e1667e7b09e37105fe9ddb3f2ca7a4b0a5f21f299d919901b8c1cb318e6a 8874696 seer-dbgsym_1.1.4-8_i386.deb 1a4fb22feb29b0bb79ee4d32ae139957f7d018cbf6c7ef6d8fa2d3e71954f1c4 9623 seer_1.1.4-8_i386.buildinfo 730ecb6e90cfa9ca0abfca2545df9ded25d591afde6cfec13251bf2b024fcdf5 1221528 seer_1.1.4-8_i386.deb Files: 366eaa5dc443a023f92be3f983ffc17f 8874696 debug optional seer-dbgsym_1.1.4-8_i386.deb 05f5e956a9165fe5c8a8e1564fec9945 9623 science optional seer_1.1.4-8_i386.buildinfo 0b4c2f470a941b425c34587b8fc06822 1221528 science optional seer_1.1.4-8_i386.deb Fri Oct 25 02:22:01 UTC 2024 I: diffoscope 281 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_18-27820.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.iphZJLLc/seer_1.1.4-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.iphZJLLc/seer_1.1.4-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.iphZJLLc/seer_1.1.4-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.iphZJLLc/b1/seer_1.1.4-8_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.iphZJLLc/b2/seer_1.1.4-8_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.496s) 0.496s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.123s) 0.123s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 843ms CPU time consumed: 843ms Fri Oct 25 02:22:02 UTC 2024 I: diffoscope 281 found no differences in the changes files, and a .buildinfo file also exists. Fri Oct 25 02:22:02 UTC 2024 I: seer from trixie built successfully and reproducibly on i386. Fri Oct 25 02:22:04 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Oct 25 02:22:04 UTC 2024 I: Submitting 12K b1/seer_1.1.4-8_i386.buildinfo.asc Fri Oct 25 02:22:04 UTC 2024 I: Submitting 12K b2/seer_1.1.4-8_i386.buildinfo.asc Fri Oct 25 02:22:05 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Oct 25 02:22:05 UTC 2024 I: Done submitting .buildinfo files. Fri Oct 25 02:22:05 UTC 2024 I: Removing signed seer_1.1.4-8_i386.buildinfo.asc files: removed './b1/seer_1.1.4-8_i386.buildinfo.asc' removed './b2/seer_1.1.4-8_i386.buildinfo.asc'