Thu Oct 17 09:12:43 UTC 2024 I: starting to build radiant/trixie/i386 on jenkins on '2024-10-17 09:12' Thu Oct 17 09:12:43 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_2/40595/console.log Thu Oct 17 09:12:43 UTC 2024 I: Downloading source for trixie/radiant=2.8.1+dfsg-2 --2024-10-17 09:12:43-- http://deb.debian.org/debian/pool/main/r/radiant/radiant_2.8.1%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2298 (2.2K) [text/prs.lines.tag] Saving to: ‘radiant_2.8.1+dfsg-2.dsc’ 0K .. 100% 316M=0s 2024-10-17 09:12:43 (316 MB/s) - ‘radiant_2.8.1+dfsg-2.dsc’ saved [2298/2298] Thu Oct 17 09:12:43 UTC 2024 I: radiant_2.8.1+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: radiant Binary: radiant Architecture: all Version: 2.8.1+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/marbl/Krona Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/radiant Vcs-Git: https://salsa.debian.org/med-team/radiant.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: radiant deb science optional arch=all Checksums-Sha1: ea69d63b4161546a45b85b30c1901d39925d00f4 14694492 radiant_2.8.1+dfsg.orig-debian-tests-data.tar.xz b21e699682a4894461d23bfe0e0872e990a0163f 157680 radiant_2.8.1+dfsg.orig.tar.xz b80022ee53bbbbbdb6679eba973d7cb8d68cd5b1 11952 radiant_2.8.1+dfsg-2.debian.tar.xz Checksums-Sha256: 7bb5e5228c8d808b44da69efab15eca5d01ea276df3cc7bda2c8021cb789ba93 14694492 radiant_2.8.1+dfsg.orig-debian-tests-data.tar.xz 70b70f14eb7474d4cb89caec3ec9beac239c5e3afbf718bbd2b06e3f15b00aad 157680 radiant_2.8.1+dfsg.orig.tar.xz 5d227e0fe412d3cb3b8fff961d3abe2049c2ff78bbd0bd38d31e8d797af10561 11952 radiant_2.8.1+dfsg-2.debian.tar.xz Files: e60aebf1705e1bf9790c39c086910012 14694492 radiant_2.8.1+dfsg.orig-debian-tests-data.tar.xz 1b6d4fe6d3412a6cfe2e5063f186879e 157680 radiant_2.8.1+dfsg.orig.tar.xz bd35b983a77ae20368667fa1aca4bdd0 11952 radiant_2.8.1+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOPjacRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHSAQ//RgWjKrf29e1us8PQyLsso6ouQBTQ0zmM oReNXLfp+arKP0ufbCnLEiasAuZ1W0IxE3MEXWBALZNB0GVp3b2C4Jt8YhzLhSPK Glt7Zw3ZeDUl8KPBjKw11cR5PjWe4Y/6FhgjCBZTD3dGJye8kLcHI7/85Rj9WTEs y4/nfm1VJ/osbHDHreUXZGyIMKj/SGRRiQqp4kwBnrHf3/5NvrowX3+B/PtSb/VH Z7Hqk9/uh5KBy0URBYv8/2B/wVG4ysD9htozNRVuPV+vFC5Eb165R4n+N255fbrz 7FSoimWEE+EJGDTVjXR0EaAioK50dIbi63cfO93ASxL8b7LgRSPvFj55wxQ36H/U sf+8JIYf+k9FLNvKg4powlsiZ3P6uJdRHqO0QN0sShi3NXy0tDsC0azbi3EzQa6Y ziUQCXlEgeiR9/QbPFC5tdR2SqBIdURshKhY0Dz3rBjLD9isSMNiFU4BGyW2+2eN +4xyo/UnT5kn4KyBtT6+HsNVhYLsOpngi795575TYqcvf+4v0WkI/bRZyKNUErqL Rdpku5QTv4zDDrW/XTquqQO1UCL3uVCBKCgC1kBOsYBf9a+BkPHR+gxeeTXHW+Cb q0eVGyVz889t5OWvHoP8Pk14kgP5fchHM/z7QfB8BqDbzGc7/0uiBoVlURS9PFmi plCI1OIK11o= =o8el -----END PGP SIGNATURE----- Thu Oct 17 09:12:43 UTC 2024 I: Checking whether the package is not for us Thu Oct 17 09:12:43 UTC 2024 I: Starting 1st build on remote node ionos6-i386.debian.net. Thu Oct 17 09:12:43 UTC 2024 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Thu Oct 17 09:13:11 UTC 2024 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Nov 19 03:35:44 -12 2025 I: pbuilder-time-stamp: 1763566544 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [radiant_2.8.1+dfsg-2.dsc] I: copying [./radiant_2.8.1+dfsg.orig-debian-tests-data.tar.xz] I: copying [./radiant_2.8.1+dfsg.orig.tar.xz] I: copying [./radiant_2.8.1+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Dec 6 18:44:55 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./radiant_2.8.1+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting radiant in radiant-2.8.1+dfsg dpkg-source: info: unpacking radiant_2.8.1+dfsg.orig.tar.xz dpkg-source: info: unpacking radiant_2.8.1+dfsg.orig-debian-tests-data.tar.xz dpkg-source: info: unpacking radiant_2.8.1+dfsg-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/117846/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='f0f30092f6c84553b9ae6cf865b09745' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='117846' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XtMNGF2D/pbuilderrc_R9Ha --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XtMNGF2D/b1 --logfile b1/build.log radiant_2.8.1+dfsg-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/117846/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19786 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 20.1 MB of archives. After unpacking 75.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3 [42.9 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-9 [102 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.191-2 [194 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5 [9550 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.1 [733 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Fetched 20.1 MB in 1s (31.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19786 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-9_i386.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../21-libelf1t64_0.191-2_i386.deb ... Unpacking libelf1t64:i386 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../23-libicu72_72.1-5_i386.deb ... Unpacking libicu72:i386 (72.1-5) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_i386.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libicu72:i386 (72.1-5) ... Setting up bsdextrautils (2.40.2-9) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:i386 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:i386 (0.191-2) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/radiant-2.8.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../radiant_2.8.1+dfsg-2_source.changes dpkg-buildpackage: info: source package radiant dpkg-buildpackage: info: source version 2.8.1+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/radiant/ debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/radiant-2.8.1+dfsg' dh_install debian/install.pl -prefix debian/radiant/usr -taxonomy /var/lib/radiant/taxonomy -scriptpath "../share/perl5/KronaTools/scripts" Creating links... Installation complete. Run ./updateTaxonomy.sh to use scripts that rely on NCBI taxonomy: ktClassifyBLAST ktGetLCA ktGetTaxInfo ktImportBLAST ktImportTaxonomy ktImportMETAREP-BLAST Run ./updateAccessions.sh to use scripts that get taxonomy IDs from accessions: ktClassifyBLAST ktGetTaxIDFromAcc ktImportBLAST for pl in `find debian -name "*.pl"` ; do \ sed -i '1s?^#!/usr/bin/env.*perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/reproducible-path/radiant-2.8.1+dfsg' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package radiant: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'radiant' in '../radiant_2.8.1+dfsg-2_all.deb'. dpkg-genbuildinfo --build=binary -O../radiant_2.8.1+dfsg-2_i386.buildinfo dpkg-genchanges --build=binary -O../radiant_2.8.1+dfsg-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/117846 and its subdirectories I: Current time: Wed Nov 19 03:36:08 -12 2025 I: pbuilder-time-stamp: 1763566568 Thu Oct 17 09:13:12 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Thu Oct 17 09:13:12 UTC 2024 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Thu Oct 17 09:13:57 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net. Thu Oct 17 09:13:58 UTC 2024 I: radiant_2.8.1+dfsg-2_i386.changes: Format: 1.8 Date: Tue, 06 Dec 2022 19:41:52 +0100 Source: radiant Binary: radiant Architecture: all Version: 2.8.1+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: radiant - explore hierarchical metagenomic data with zoomable pie charts Changes: radiant (2.8.1+dfsg-2) unstable; urgency=medium . * Fix watch file * Standards-Version: 4.6.1 (routine-update) * Remove trailing whitespace in debian/changelog (routine-update) Checksums-Sha1: 00214e565d0afea6a3785dd5b81cdb597e204f7f 180564 radiant_2.8.1+dfsg-2_all.deb af05d32b072c94e3e7ab91eaab52ded452f400b5 4571 radiant_2.8.1+dfsg-2_i386.buildinfo Checksums-Sha256: 1eb6f3c822fcad0b09593a0072387b089d9cd4ae516eb7f103b5f3b5a17f4507 180564 radiant_2.8.1+dfsg-2_all.deb 94c1e8da7efc82da27141786fe38fc7886c415dd7f15a66ca7b49f63bb4e9286 4571 radiant_2.8.1+dfsg-2_i386.buildinfo Files: 6a59fb4eadb7be95a2c846e516cd87cf 180564 science optional radiant_2.8.1+dfsg-2_all.deb d026f828bdff554354927257b10c9b11 4571 science optional radiant_2.8.1+dfsg-2_i386.buildinfo Thu Oct 17 09:13:59 UTC 2024 I: diffoscope 280 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_2-40595.service Warning: program compiled against libxml 212 using older 209 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.XtMNGF2D/radiant_2.8.1+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.XtMNGF2D/radiant_2.8.1+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.XtMNGF2D/radiant_2.8.1+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.XtMNGF2D/b1/radiant_2.8.1+dfsg-2_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.XtMNGF2D/b2/radiant_2.8.1+dfsg-2_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.386s) 0.386s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.018s) 0.018s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 727ms CPU time consumed: 726ms Thu Oct 17 09:14:00 UTC 2024 I: diffoscope 280 found no differences in the changes files, and a .buildinfo file also exists. Thu Oct 17 09:14:00 UTC 2024 I: radiant from trixie built successfully and reproducibly on i386. Thu Oct 17 09:14:01 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Oct 17 09:14:01 UTC 2024 I: Submitting 8.0K b1/radiant_2.8.1+dfsg-2_i386.buildinfo.asc Thu Oct 17 09:14:02 UTC 2024 I: Submitting 8.0K b2/radiant_2.8.1+dfsg-2_i386.buildinfo.asc Thu Oct 17 09:14:03 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Oct 17 09:14:03 UTC 2024 I: Done submitting .buildinfo files. Thu Oct 17 09:14:03 UTC 2024 I: Removing signed radiant_2.8.1+dfsg-2_i386.buildinfo.asc files: removed './b1/radiant_2.8.1+dfsg-2_i386.buildinfo.asc' removed './b2/radiant_2.8.1+dfsg-2_i386.buildinfo.asc'