Tue Mar 26 02:30:50 UTC 2024 I: starting to build racon/trixie/i386 on jenkins on '2024-03-26 02:30' Tue Mar 26 02:30:50 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_1/19733/console.log Tue Mar 26 02:30:50 UTC 2024 I: Downloading source for trixie/racon=1.5.0-3 --2024-03-26 02:30:50-- http://deb.debian.org/debian/pool/main/r/racon/racon_1.5.0-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2106 (2.1K) [text/prs.lines.tag] Saving to: ‘racon_1.5.0-3.dsc’ 0K .. 100% 292M=0s 2024-03-26 02:30:50 (292 MB/s) - ‘racon_1.5.0-3.dsc’ saved [2106/2106] Tue Mar 26 02:30:50 UTC 2024 I: racon_1.5.0-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: racon Binary: racon Architecture: any Version: 1.5.0-3 Maintainer: Debian Med Packaging Team Uploaders: Cédric Lood , Andreas Tille Homepage: https://github.com/lbcb-sci/racon Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/racon Vcs-Git: https://salsa.debian.org/med-team/racon.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler Package-List: racon deb science optional arch=any Checksums-Sha1: c508bea6f7b627e1796f2017669a8e99ed548ddd 3084154 racon_1.5.0.orig.tar.gz 5d5d6ba7f343bf6ee3124a052eb1858b9431dbf1 20652 racon_1.5.0-3.debian.tar.xz Checksums-Sha256: 58fdbbd88f0990b18e3139280aa4fa81e138a9cf0761edd66c43982af784d395 3084154 racon_1.5.0.orig.tar.gz 87ebd723dfb828888b59a5ed30143aa24ec3798c933f41e00196dacc3874d911 20652 racon_1.5.0-3.debian.tar.xz Files: de1982c33464fc7cec8a172931a6cf00 3084154 racon_1.5.0.orig.tar.gz face5096f46b2ce6c9c836bb01cf1603 20652 racon_1.5.0-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmM1k2ERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHvaQ/+N79w1AElJT5zodwml2cN53AhsH46O5QP JzGAY+aYLx/AZ9C6VIbd6eiTsZ+qNDSWLqqd/ABykcNbZEA+dBiRpX08U4/5OCNi zhXwtP+rO9w0znNpX6S8jUHMnC9yFlwW4t/1GmNAZ42byGm1vA5/6IXTkg2icHL0 8SSvibSqiZgNhiitaMPnKs1fSQA2ymTONHczdKuSRjTzpVkADmdpQch3j0TwZmF5 /hcYo4651y2NbVVJRbTEwPNoDXUE3TaXo0UZVojz5sOYHDQBGcbrai64O7ycB7Pd w+y3JfPaHzfRm23vsnO6PbpG+GFOflG54PIlNHa0Z90QHGZSlZym2gjvU36M2fa9 t3ZMnBLcUBkvTPWJeis9H3mv1/gmFtomkxf0cMz928nSwO8P1MvhoyrCu66q7PzO sOI8KxZ4tdbz+JvwHaa/FBrwl+n1krpXMD8PwoGxsLrY0a/gErVXooD3YoeTzv6d U/xsrofS7jo8CIaWTT2aMoK5JN5YRbk12zH2hWnJw/7XOKBcnTbIhQjRpf4AwfjS X8IJf9txoPJEn1atb/Af7F4FqOmMoAwlDsJPrftzo9bPpfaUocqekHZZJsMro9Xi fbm+SfYqW1SkeLNSR2twNJG1r+eZm6dNsipnerAsTGM7ejcAoyu0LjtZnpoGgS/5 41EO1XUq4VQ= =933u -----END PGP SIGNATURE----- Tue Mar 26 02:30:50 UTC 2024 I: Checking whether the package is not for us Tue Mar 26 02:30:50 UTC 2024 I: Starting 1st build on remote node ionos2-i386.debian.net. Tue Mar 26 02:30:50 UTC 2024 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Tue Mar 26 02:56:51 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Mar 25 14:30:53 -12 2024 I: pbuilder-time-stamp: 1711420253 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [racon_1.5.0-3.dsc] I: copying [./racon_1.5.0.orig.tar.gz] I: copying [./racon_1.5.0-3.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Sep 29 12:45:21 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./racon_1.5.0-3.dsc: no acceptable signature found dpkg-source: info: extracting racon in racon-1.5.0 dpkg-source: info: unpacking racon_1.5.0.orig.tar.gz dpkg-source: info: unpacking racon_1.5.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/60059/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='bd1e44180e234e92924edc04df4e48cb' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='60059' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.kBpN1lkm/pbuilderrc_I9UN --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.kBpN1lkm/b1 --logfile b1/build.log racon_1.5.0-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos2-i386 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 25 11:27 /bin -> usr/bin I: user script /srv/workspace/pbuilder/60059/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19816 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev (>= 1.2.7-3~); however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcurl4{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgtest-dev{a} libicu72{a} libjsoncpp25{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1{a} libsub-override-perl{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 61 newly installed, 0 to remove and 0 not upgraded. Need to get 38.6 MB of archives. After unpacking 142 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libproc2-0 i386 2:4.0.4-4 [65.4 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 procps i386 2:4.0.4-4 [876 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-2+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 libmagic1 i386 1:5.45-2+b1 [114 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-2+b1 [43.0 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-3 [1195 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.39.3-6 [93.3 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-1+b2 [39.6 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.0-3 [1413 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b2 [727 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libarchive13 i386 3.7.2-1 [386 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b3 [314 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-4+b1 [20.7 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-4+b1 [60.7 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5+b3 [196 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.59.0-1 [82.5 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libpsl5 i386 0.21.2-1+b1 [59.7 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 libssh2-1 i386 1.11.0-4 [224 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 libcurl4 i386 8.5.0-2 [463 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.5.0-2+b2 [104 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 libjsoncpp25 i386 1.9.5-6+b2 [89.2 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 librhash0 i386 1.4.3-3+b1 [143 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libuv1 i386 1.48.0-1 [156 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 cmake-data all 3.28.3-1 [2128 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 cmake i386 3.28.3-1 [11.7 MB] Get: 36 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.14.1 [85.6 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 43 http://deb.debian.org/debian trixie/main i386 libelf1 i386 0.190-1+b1 [182 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1 [118 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 debhelper all 13.14.1 [890 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 googletest all 1.14.0-1 [512 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 libbiosoup-dev all 0.10.0-4 [7784 B] Get: 51 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg-3+b1 [915 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libbioparser-dev all 3.0.15-3 [9032 B] Get: 53 http://deb.debian.org/debian trixie/main i386 rapidjson-dev all 1.1.0+dfsg2-7.1 [97.7 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 libcereal-dev i386 1.3.2+dfsg-5 [221 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libedlib1 i386 1.2.7-5 [17.1 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libedlib-dev i386 1.2.7-5 [21.8 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libgtest-dev i386 1.14.0-1+b1 [263 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libspoa7.0.0 i386 4.1.4-1 [89.7 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libspoa-dev i386 4.1.4-1 [9396 B] Get: 60 http://deb.debian.org/debian trixie/main i386 libthread-pool-dev i386 4.0.0-2 [7296 B] Get: 61 http://deb.debian.org/debian trixie/main i386 rampler i386 2.1.1-1 [22.5 kB] Fetched 38.6 MB in 1s (48.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19816 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_i386.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-2+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../04-libmagic1_1%3a5.45-2+b1_i386.deb ... Unpacking libmagic1:i386 (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-2+b1_i386.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-3_i386.deb ... Unpacking groff-base (1.23.0-3) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The CXX compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu # Somehow the means in the patch for CMakeLists.txt to replace -lpthread by -pthread to not work # Just hack it here sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' dh_auto_build -O--buildsystem=cmake cd obj-i686-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu/CMakeFiles 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10%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp [ 20%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o [ 30%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp [ 40%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp [ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp /build/reproducible-path/racon-1.5.0/src/window.cpp: In member function 'bool racon::Window::generate_consensus(std::shared_ptr, bool)': /build/reproducible-path/racon-1.5.0/src/window.cpp:142:27: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 142 | "contig %lu might be chimeric in window %u!\n", id_, rank_); | ~~^ ~~~ | | | | long unsigned int uint64_t {aka long long unsigned int} | %llu /build/reproducible-path/racon-1.5.0/src/overlap.cpp: In member function 'virtual void racon::Overlap::align_overlaps(const char*, uint32_t, const char*, uint32_t)': /build/reproducible-path/racon-1.5.0/src/overlap.cpp:219:48: warning: format '%zu' expects argument of type 'size_t', but argument 3 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 219 | "edlib unable to align pair (%zu x %zu)!\n", q_id_, t_id_); | ~~^ ~~~~~ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu /build/reproducible-path/racon-1.5.0/src/overlap.cpp:219:54: warning: format '%zu' expects argument of type 'size_t', but argument 4 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 219 | "edlib unable to align pair (%zu x %zu)!\n", q_id_, t_id_); | ~~^ ~~~~~ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libracon.a CMakeFiles/racon.dir/src/logger.cpp.o CMakeFiles/racon.dir/src/polisher.cpp.o CMakeFiles/racon.dir/src/overlap.cpp.o CMakeFiles/racon.dir/src/sequence.cpp.o CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/ranlib lib/libracon.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' [ 60%] Built target racon make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/depend make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 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CMakeFiles/racon_test.dir/test/racon_test.cpp.o /usr/bin/c++ -DTEST_DATA=\"/build/reproducible-path/racon-1.5.0/test/data/\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' [ 80%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o /usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' [ 90%] Built target racon_exe [100%] Linking CXX executable bin/racon_test /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/racon_test.dir/test/racon_test.cpp.o -o bin/racon_test lib/libracon.a -ledlib -lspoa -pthread -lz /usr/lib/i386-linux-gnu/libgtest_main.a /usr/lib/i386-linux-gnu/libgtest.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' [100%] Built target racon_test make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' cd test && ../obj-*/bin/racon_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (16 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (3 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (12 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (19 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (19 ms) [----------] 5 tests from RaconInitializeTest (72 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.002388 s [racon::Polisher::initialize] loaded sequences 0.106597 s [racon::Polisher::initialize] loaded overlaps 0.004415 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.173177 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.257134 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.349166 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.429114 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.521139 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.609139 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.817138 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.925116 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.013114 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.085115 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.193135 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.233131 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.269146 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.269281 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.285140 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.293122 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.297049 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.357172 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.357307 s [racon::Polisher::initialize] aligning overlaps [====================] 1.373186 s [racon::Polisher::initialize] transformed data into windows 0.111769 s [racon::Polisher::polish] generating consensus [=> ] 0.932006 s [racon::Polisher::polish] generating consensus [==> ] 1.624044 s [racon::Polisher::polish] generating consensus [===> ] 2.128776 s [racon::Polisher::polish] generating consensus [====> ] 2.496102 s [racon::Polisher::polish] generating consensus [=====> ] 2.792054 s [racon::Polisher::polish] generating consensus [======> ] 3.036140 s [racon::Polisher::polish] generating consensus [=======> ] 3.252616 s [racon::Polisher::polish] generating consensus [========> ] 3.716094 s [racon::Polisher::polish] generating consensus [=========> ] 4.488270 s [racon::Polisher::polish] generating consensus [==========> ] 5.343966 s [racon::Polisher::polish] generating consensus [===========> ] 6.195862 s [racon::Polisher::polish] generating consensus [============> ] 6.919860 s [racon::Polisher::polish] generating consensus [=============> ] 8.783912 s [racon::Polisher::polish] generating consensus [==============> ] 9.975869 s [racon::Polisher::polish] generating consensus [===============> ] 10.711892 s [racon::Polisher::polish] generating consensus [================> ] 11.543882 s [racon::Polisher::polish] generating consensus [=================> ] 12.499862 s [racon::Polisher::polish] generating consensus [==================> ] 13.023857 s [racon::Polisher::polish] generating consensus [===================>] 13.708342 s [racon::Polisher::polish] generating consensus [====================] 15.808773 s [racon::Polisher::] total = 17.452825 s [ OK ] RaconPolishingTest.ConsensusWithQualities (17496 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.001907 s [racon::Polisher::initialize] loaded sequences 0.033135 s [racon::Polisher::initialize] loaded overlaps 0.000581 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.104629 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.197959 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.297892 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.381707 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.417646 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.429712 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.465748 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.497641 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.717823 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.805827 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.841723 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.917836 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.997775 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.998256 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.049846 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.065796 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.170732 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.224588 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.224762 s [racon::Polisher::initialize] aligning overlaps [====================] 1.238992 s [racon::Polisher::initialize] transformed data into windows 0.000821 s [racon::Polisher::polish] generating consensus [=> ] 1.277517 s [racon::Polisher::polish] generating consensus [==> ] 2.449765 s [racon::Polisher::polish] generating consensus [===> ] 2.965799 s [racon::Polisher::polish] generating consensus [====> ] 3.521978 s [racon::Polisher::polish] generating consensus [=====> ] 3.845935 s [racon::Polisher::polish] generating consensus [======> ] 4.265073 s [racon::Polisher::polish] generating consensus [=======> ] 4.585901 s [racon::Polisher::polish] generating consensus [========> ] 4.941955 s [racon::Polisher::polish] generating consensus [=========> ] 5.489484 s [racon::Polisher::polish] generating consensus [==========> ] 6.313772 s [racon::Polisher::polish] generating consensus [===========> ] 7.333478 s [racon::Polisher::polish] generating consensus [============> ] 8.405916 s [racon::Polisher::polish] generating consensus [=============> ] 10.025506 s [racon::Polisher::polish] generating consensus [==============> ] 11.125481 s [racon::Polisher::polish] generating consensus [===============> ] 12.309004 s [racon::Polisher::polish] generating consensus [================> ] 13.581552 s [racon::Polisher::polish] generating consensus [=================> ] 14.629521 s [racon::Polisher::polish] generating consensus [==================> ] 15.281824 s [racon::Polisher::polish] generating consensus [===================>] 16.165887 s [racon::Polisher::polish] generating consensus [====================] 20.166056 s [racon::Polisher::] total = 21.497522 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (21524 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.000876 s [racon::Polisher::initialize] loaded sequences 0.063028 s [racon::Polisher::initialize] loaded overlaps 0.054106 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.016273 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.016405 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.016525 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.016643 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.016760 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.016897 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.017014 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.017131 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.017248 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.017366 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.017482 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.017596 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.017711 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.017827 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.017942 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.022603 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.022725 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.022842 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.022964 s [racon::Polisher::initialize] aligning overlaps [====================] 0.023081 s [racon::Polisher::initialize] transformed data into windows 0.087781 s [racon::Polisher::polish] generating consensus [=> ] 0.745209 s [racon::Polisher::polish] generating consensus [==> ] 1.325202 s [racon::Polisher::polish] generating consensus [===> ] 2.041175 s [racon::Polisher::polish] generating consensus [====> ] 2.461223 s [racon::Polisher::polish] generating consensus [=====> ] 2.645204 s [racon::Polisher::polish] generating consensus [======> ] 2.841473 s [racon::Polisher::polish] generating consensus [=======> ] 3.165539 s [racon::Polisher::polish] generating consensus [========> ] 3.457622 s [racon::Polisher::polish] generating consensus [=========> ] 3.685511 s [racon::Polisher::polish] generating consensus [==========> ] 4.256556 s [racon::Polisher::polish] generating consensus [===========> ] 5.061517 s [racon::Polisher::polish] generating consensus [============> ] 6.025526 s [racon::Polisher::polish] generating consensus [=============> ] 7.081087 s [racon::Polisher::polish] generating consensus [==============> ] 8.529093 s [racon::Polisher::polish] generating consensus [===============> ] 9.637082 s [racon::Polisher::polish] generating consensus [================> ] 10.373117 s [racon::Polisher::polish] generating consensus [=================> ] 11.253081 s [racon::Polisher::polish] generating consensus [==================> ] 11.753086 s [racon::Polisher::polish] generating consensus [===================>] 12.221071 s [racon::Polisher::polish] generating consensus [====================] 14.146083 s [racon::Polisher::] total = 14.430012 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (14459 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.001214 s [racon::Polisher::initialize] loaded sequences 0.029469 s [racon::Polisher::initialize] loaded overlaps 0.035179 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.018626 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.019342 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.019955 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.020552 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.021138 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.021742 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.022349 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.022882 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.023410 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.023931 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.024496 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.025038 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.025638 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.026271 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.026899 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.027494 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.028210 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.028742 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.029252 s [racon::Polisher::initialize] aligning overlaps [====================] 0.029769 s [racon::Polisher::initialize] transformed data into windows 0.001104 s [racon::Polisher::polish] generating consensus [=> ] 0.699218 s [racon::Polisher::polish] generating consensus [==> ] 1.451895 s [racon::Polisher::polish] generating consensus [===> ] 2.155260 s [racon::Polisher::polish] generating consensus [====> ] 2.675195 s [racon::Polisher::polish] generating consensus [=====> ] 2.999301 s [racon::Polisher::polish] generating consensus [======> ] 3.295143 s [racon::Polisher::polish] generating consensus [=======> ] 3.615203 s [racon::Polisher::polish] generating consensus [========> ] 4.055220 s [racon::Polisher::polish] generating consensus [=========> ] 4.479050 s [racon::Polisher::polish] generating consensus [==========> ] 5.151117 s [racon::Polisher::polish] generating consensus [===========> ] 6.023063 s [racon::Polisher::polish] generating consensus [============> ] 7.115136 s [racon::Polisher::polish] generating consensus [=============> ] 8.514723 s [racon::Polisher::polish] generating consensus [==============> ] 9.935219 s [racon::Polisher::polish] generating consensus [===============> ] 11.134718 s [racon::Polisher::polish] generating consensus [================> ] 12.239232 s [racon::Polisher::polish] generating consensus [=================> ] 13.126713 s [racon::Polisher::polish] generating consensus [==================> ] 13.638715 s [racon::Polisher::polish] generating consensus [===================>] 14.202698 s [racon::Polisher::polish] generating consensus [====================] 17.485959 s [racon::Polisher::] total = 17.623345 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (17645 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.000871 s [racon::Polisher::initialize] loaded sequences 0.054388 s [racon::Polisher::initialize] loaded overlaps 0.000461 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.153826 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.253853 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.381832 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.490127 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.534113 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.574115 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.670051 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.718130 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.758126 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.794105 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.838100 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.882056 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.962058 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.982117 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.070496 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.110048 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.170077 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.206086 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.206716 s [racon::Polisher::initialize] aligning overlaps [====================] 1.234214 s [racon::Polisher::initialize] transformed data into windows 0.066916 s [racon::Polisher::polish] generating consensus [=> ] 2.296404 s [racon::Polisher::polish] generating consensus [==> ] 2.297019 s [racon::Polisher::polish] generating consensus [===> ] 4.108299 s [racon::Polisher::polish] generating consensus [====> ] 4.108983 s [racon::Polisher::polish] generating consensus [=====> ] 4.964279 s [racon::Polisher::polish] generating consensus [======> ] 4.964932 s [racon::Polisher::polish] generating consensus [=======> ] 5.788269 s [racon::Polisher::polish] generating consensus [========> ] 5.876334 s [racon::Polisher::polish] generating consensus [=========> ] 7.264266 s [racon::Polisher::polish] generating consensus [==========> ] 8.048368 s [racon::Polisher::polish] generating consensus [===========> ] 9.787921 s [racon::Polisher::polish] generating consensus [============> ] 11.343897 s [racon::Polisher::polish] generating consensus [=============> ] 15.328342 s [racon::Polisher::polish] generating consensus [==============> ] 16.560296 s [racon::Polisher::polish] generating consensus [===============> ] 18.263950 s [racon::Polisher::polish] generating consensus [================> ] 19.463989 s [racon::Polisher::polish] generating consensus [=================> ] 20.844345 s [racon::Polisher::polish] generating consensus [==================> ] 21.924287 s [racon::Polisher::polish] generating consensus [===================>] 22.971921 s [racon::Polisher::polish] generating consensus [====================] 29.123959 s [racon::Polisher::] total = 30.545704 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (30633 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.001136 s [racon::Polisher::initialize] loaded sequences 0.059056 s [racon::Polisher::initialize] loaded overlaps 0.000639 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.224953 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.356858 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.436902 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.544906 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.600909 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.624807 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.672943 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.761043 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.777036 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.813027 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.845158 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.924950 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.952924 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.040887 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.140966 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.188941 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.208994 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.260907 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.296890 s [racon::Polisher::initialize] aligning overlaps [====================] 1.347513 s [racon::Polisher::initialize] transformed data into windows 0.063397 s [racon::Polisher::polish] generating consensus [=> ] 0.941838 s [racon::Polisher::polish] generating consensus [==> ] 1.653811 s [racon::Polisher::polish] generating consensus [===> ] 2.201416 s [racon::Polisher::polish] generating consensus [====> ] 2.649750 s [racon::Polisher::polish] generating consensus [=====> ] 2.829833 s [racon::Polisher::polish] generating consensus [======> ] 3.049825 s [racon::Polisher::polish] generating consensus [=======> ] 3.409850 s [racon::Polisher::polish] generating consensus [========> ] 3.762432 s [racon::Polisher::polish] generating consensus [=========> ] 4.181948 s [racon::Polisher::polish] generating consensus [==========> ] 4.685870 s [racon::Polisher::polish] generating consensus [===========> ] 5.489819 s [racon::Polisher::polish] generating consensus [============> ] 6.101855 s [racon::Polisher::polish] generating consensus [=============> ] 7.285798 s [racon::Polisher::polish] generating consensus [==============> ] 8.173813 s [racon::Polisher::polish] generating consensus [===============> ] 9.289389 s [racon::Polisher::polish] generating consensus [================> ] 10.857444 s [racon::Polisher::polish] generating consensus [=================> ] 11.613449 s [racon::Polisher::polish] generating consensus [==================> ] 12.085394 s [racon::Polisher::polish] generating consensus [===================>] 12.729414 s [racon::Polisher::polish] generating consensus [====================] 14.784695 s [racon::Polisher::] total = 16.308678 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (16331 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.060482 s [racon::Polisher::initialize] loaded sequences 0.063037 s [racon::Polisher::initialize] loaded overlaps 0.042132 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.167944 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.237075 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.317058 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.393057 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.501075 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.561056 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.721047 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.793046 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.865053 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.925051 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.989061 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.085046 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.229050 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.389049 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.477083 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.561048 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.661038 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.805043 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.805069 s [racon::Polisher::initialize] aligning overlaps [====================] 1.869587 s [racon::Polisher::initialize] transformed data into windows 0.160662 s [racon::Polisher::polish] generating consensus [=> ] 0.786832 s [racon::Polisher::polish] generating consensus [==> ] 1.377069 s [racon::Polisher::polish] generating consensus [===> ] 1.993736 s [racon::Polisher::polish] generating consensus [====> ] 1.993935 s [racon::Polisher::polish] generating consensus [=====> ] 2.326329 s [racon::Polisher::polish] generating consensus [======> ] 2.520058 s [racon::Polisher::polish] generating consensus [=======> ] 2.816374 s [racon::Polisher::polish] generating consensus [========> ] 2.878738 s [racon::Polisher::polish] generating consensus [=========> ] 3.558923 s [racon::Polisher::polish] generating consensus [==========> ] 3.874922 s [racon::Polisher::polish] generating consensus [===========> ] 4.203057 s [racon::Polisher::polish] generating consensus [============> ] 4.335006 s [racon::Polisher::polish] generating consensus [=============> ] 4.718979 s [racon::Polisher::polish] generating consensus [==============> ] 4.719807 s [racon::Polisher::polish] generating consensus [===============> ] 5.294789 s [racon::Polisher::polish] generating consensus [================> ] 5.294997 s [racon::Polisher::polish] generating consensus [=================> ] 6.878702 s [racon::Polisher::polish] generating consensus [==================> ] 7.241725 s [racon::Polisher::polish] generating consensus [===================>] 7.394553 s [racon::Polisher::polish] generating consensus [====================] 7.428708 s [racon::Polisher::] total = 9.626792 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (9654 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.064108 s [racon::Polisher::initialize] loaded sequences 0.063423 s [racon::Polisher::initialize] loaded overlaps 0.017280 s [racon::Polisher::initialize] aligning overlaps [=> ] 2.064324 s [racon::Polisher::initialize] aligning overlaps [==> ] 3.360335 s [racon::Polisher::initialize] aligning overlaps [===> ] 4.500743 s [racon::Polisher::initialize] aligning overlaps [====> ] 5.936784 s [racon::Polisher::initialize] aligning overlaps [=====> ] 7.104771 s [racon::Polisher::initialize] aligning overlaps [======> ] 7.872373 s [racon::Polisher::initialize] aligning overlaps [=======> ] 9.012745 s [racon::Polisher::initialize] aligning overlaps [========> ] 10.500735 s [racon::Polisher::initialize] aligning overlaps [=========> ] 11.732633 s [racon::Polisher::initialize] aligning overlaps [==========> ] 12.993067 s [racon::Polisher::initialize] aligning overlaps [===========> ] 14.012348 s [racon::Polisher::initialize] aligning overlaps [============> ] 15.604698 s [racon::Polisher::initialize] aligning overlaps [=============> ] 17.112708 s [racon::Polisher::initialize] aligning overlaps [==============> ] 18.564321 s [racon::Polisher::initialize] aligning overlaps [===============> ] 20.076329 s [racon::Polisher::initialize] aligning overlaps [================> ] 21.380466 s [racon::Polisher::initialize] aligning overlaps [=================> ] 22.472461 s [racon::Polisher::initialize] aligning overlaps [==================> ] 23.704780 s [racon::Polisher::initialize] aligning overlaps [===================>] 25.408325 s [racon::Polisher::initialize] aligning overlaps [====================] 26.049635 s [racon::Polisher::initialize] transformed data into windows 2.213458 s [racon::Polisher::polish] generating consensus [=> ] 27.618121 s [racon::Polisher::polish] generating consensus [==> ] 44.438503 s [racon::Polisher::polish] generating consensus [===> ] 61.530185 s [racon::Polisher::polish] generating consensus [====> ] 77.684179 s [racon::Polisher::polish] generating consensus [=====> ] 97.650110 s [racon::Polisher::polish] generating consensus [======> ] 116.138086 s [racon::Polisher::polish] generating consensus [=======> ] 138.594529 s [racon::Polisher::polish] generating consensus [========> ] 152.354251 s [racon::Polisher::polish] generating consensus [=========> ] 170.430123 s [racon::Polisher::polish] generating consensus [==========> ] 194.722081 s [racon::Polisher::polish] generating consensus [===========> ] 212.202457 s [racon::Polisher::polish] generating consensus [============> ] 234.498138 s [racon::Polisher::polish] generating consensus [=============> ] 253.190107 s [racon::Polisher::polish] generating consensus [==============> ] 275.086090 s [racon::Polisher::polish] generating consensus [===============> ] 297.494491 s [racon::Polisher::polish] generating consensus [================> ] 309.666551 s [racon::Polisher::polish] generating consensus [=================> ] 331.794522 s [racon::Polisher::polish] generating consensus [==================> ] 356.858141 s [racon::Polisher::polish] generating consensus [===================>] 376.998095 s [racon::Polisher::polish] generating consensus [====================] 398.331719 s [racon::Polisher::] total = 426.745055 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (426776 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.029005 s [racon::Polisher::initialize] loaded sequences 0.029329 s [racon::Polisher::initialize] loaded overlaps 0.017689 s [racon::Polisher::initialize] aligning overlaps [=> ] 2.228909 s [racon::Polisher::initialize] aligning overlaps [==> ] 3.546867 s [racon::Polisher::initialize] aligning overlaps [===> ] 4.563566 s [racon::Polisher::initialize] aligning overlaps [====> ] 6.211436 s [racon::Polisher::initialize] aligning overlaps [=====> ] 7.591866 s [racon::Polisher::initialize] aligning overlaps [======> ] 8.526496 s [racon::Polisher::initialize] aligning overlaps [=======> ] 10.035429 s [racon::Polisher::initialize] aligning overlaps [========> ] 11.662821 s [racon::Polisher::initialize] aligning overlaps [=========> ] 13.395441 s [racon::Polisher::initialize] aligning overlaps [==========> ] 15.231423 s [racon::Polisher::initialize] aligning overlaps [===========> ] 16.207410 s [racon::Polisher::initialize] aligning overlaps [============> ] 17.863400 s [racon::Polisher::initialize] aligning overlaps [=============> ] 19.663832 s [racon::Polisher::initialize] aligning overlaps [==============> ] 21.234604 s [racon::Polisher::initialize] aligning overlaps [===============> ] 22.743714 s [racon::Polisher::initialize] aligning overlaps [================> ] 24.123715 s [racon::Polisher::initialize] aligning overlaps [=================> ] 26.003022 s [racon::Polisher::initialize] aligning overlaps [==================> ] 28.002123 s [racon::Polisher::initialize] aligning overlaps [===================>] 29.751407 s [racon::Polisher::initialize] aligning overlaps [====================] 31.089236 s [racon::Polisher::initialize] transformed data into windows 0.025330 s [racon::Polisher::polish] generating consensus [=> ] 39.826906 s [racon::Polisher::polish] generating consensus [==> ] 65.099412 s [racon::Polisher::polish] generating consensus [===> ] 96.443106 s [racon::Polisher::polish] generating consensus [====> ] 116.266940 s [racon::Polisher::polish] generating consensus [=====> ] 137.349464 s [racon::Polisher::polish] generating consensus [======> ] 162.017803 s [racon::Polisher::polish] generating consensus [=======> ] 189.270682 s [racon::Polisher::polish] generating consensus [========> ] 208.453693 s [racon::Polisher::polish] generating consensus [=========> ] 233.539329 s [racon::Polisher::polish] generating consensus [==========> ] 261.664480 s [racon::Polisher::polish] generating consensus [===========> ] 287.142630 s [racon::Polisher::polish] generating consensus [============> ] 315.373766 s [racon::Polisher::polish] generating consensus [=============> ] 339.971025 s [racon::Polisher::polish] generating consensus [==============> ] 371.607006 s [racon::Polisher::polish] generating consensus [===============> ] 405.655182 s [racon::Polisher::polish] generating consensus [================> ] 420.303134 s [racon::Polisher::polish] generating consensus [=================> ] 455.214948 s [racon::Polisher::polish] generating consensus [==================> ] 485.286625 s [racon::Polisher::polish] generating consensus [===================>] 511.506602 s [racon::Polisher::polish] generating consensus [====================] 523.443224 s [racon::Polisher::] total = 554.638072 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (554667 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.057365 s [racon::Polisher::initialize] loaded sequences 0.056278 s [racon::Polisher::initialize] loaded overlaps 0.024263 s [racon::Polisher::initialize] aligning overlaps [=> ] 1.189289 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.970594 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.661068 s [racon::Polisher::initialize] aligning overlaps [====> ] 3.640914 s [racon::Polisher::initialize] aligning overlaps [=====> ] 4.485918 s [racon::Polisher::initialize] aligning overlaps [======> ] 5.052563 s [racon::Polisher::initialize] aligning overlaps [=======> ] 5.867443 s [racon::Polisher::initialize] aligning overlaps [========> ] 6.927867 s [racon::Polisher::initialize] aligning overlaps [=========> ] 7.895263 s [racon::Polisher::initialize] aligning overlaps [==========> ] 8.791511 s [racon::Polisher::initialize] aligning overlaps [===========> ] 9.520092 s [racon::Polisher::initialize] aligning overlaps [============> ] 10.765507 s [racon::Polisher::initialize] aligning overlaps [=============> ] 12.004325 s [racon::Polisher::initialize] aligning overlaps [==============> ] 13.102405 s [racon::Polisher::initialize] aligning overlaps [===============> ] 14.281362 s [racon::Polisher::initialize] aligning overlaps [================> ] 15.347626 s [racon::Polisher::initialize] aligning overlaps [=================> ] 16.655707 s [racon::Polisher::initialize] aligning overlaps [==================> ] 17.796015 s [racon::Polisher::initialize] aligning overlaps [===================>] 18.786022 s [racon::Polisher::initialize] aligning overlaps [====================] 19.043787 s [racon::Polisher::initialize] transformed data into windows 1.948642 s [racon::Polisher::polish] generating consensus [=> ] 20.279446 s [racon::Polisher::polish] generating consensus [==> ] 34.650748 s [racon::Polisher::polish] generating consensus [===> ] 50.930155 s [racon::Polisher::polish] generating consensus [====> ] 64.246260 s [racon::Polisher::polish] generating consensus [=====> ] 78.529753 s [racon::Polisher::polish] generating consensus [======> ] 95.451892 s [racon::Polisher::polish] generating consensus [=======> ] 112.813918 s [racon::Polisher::polish] generating consensus [========> ] 125.372074 s [racon::Polisher::polish] generating consensus [=========> ] 141.339621 s [racon::Polisher::polish] generating consensus [==========> ] 160.495335 s [racon::Polisher::polish] generating consensus [===========> ] 176.195365 s [racon::Polisher::polish] generating consensus [============> ] 194.210976 s [racon::Polisher::polish] generating consensus [=============> ] 209.623189 s [racon::Polisher::polish] generating consensus [==============> ] 226.210844 s [racon::Polisher::polish] generating consensus [===============> ] 244.536178 s [racon::Polisher::polish] generating consensus [================> ] 255.045248 s [racon::Polisher::polish] generating consensus [=================> ] 277.013728 s [racon::Polisher::polish] generating consensus [==================> ] 303.981879 s [racon::Polisher::polish] generating consensus [===================>] 327.065229 s [racon::Polisher::polish] generating consensus [====================] 340.430017 s [racon::Polisher::] total = 361.564577 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (361591 ms) [----------] 10 tests from RaconPolishingTest (1470785 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (1470862 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake cd obj-i686-linux-gnu && make -j8 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/racon-1.5.0/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_i386.deb'. dpkg-deb: building package 'racon' in '../racon_1.5.0-3_i386.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_i386.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/60059 and its subdirectories I: Current time: Mon Mar 25 14:56:51 -12 2024 I: pbuilder-time-stamp: 1711421811 Tue Mar 26 02:56:52 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net. Tue Mar 26 02:56:52 UTC 2024 I: Preparing to do remote build '2' on ionos6-i386.debian.net. Tue Mar 26 03:16:02 UTC 2024 I: Deleting $TMPDIR on ionos6-i386.debian.net. Tue Mar 26 03:16:03 UTC 2024 I: racon_1.5.0-3_i386.changes: Format: 1.8 Date: Thu, 29 Sep 2022 14:39:55 +0200 Source: racon Binary: racon racon-dbgsym Architecture: i386 Version: 1.5.0-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: racon - consensus module for raw de novo DNA assembly of long uncorrected Changes: racon (1.5.0-3) unstable; urgency=medium . * Standards-Version: 4.6.1 (routine-update) * Drop patch making racon compatible to old libthread_pool Checksums-Sha1: 12ed06feb5a4dcc03752eeb363622c6ee4c5f3f5 987500 racon-dbgsym_1.5.0-3_i386.deb 317f06658bd2f6808765364b0277d59555f8d9a9 6464 racon_1.5.0-3_i386.buildinfo a68b08ad8cc912bf891626464cb330012e844909 3120156 racon_1.5.0-3_i386.deb Checksums-Sha256: 8930bf53e6b67533df8ee4abfa5938587b7efd1a3e01301f233c079894b3746f 987500 racon-dbgsym_1.5.0-3_i386.deb 28ce0c3517194ac255a8205206a08d3ddfa569668b5b9020bb600715502b775d 6464 racon_1.5.0-3_i386.buildinfo 50b2811d180a9d95559ab85a6fdb04fee6d67168f8896f1073421061db3dbb68 3120156 racon_1.5.0-3_i386.deb Files: 9d12efbbc82d82599e0fb37e85b4bfa2 987500 debug optional racon-dbgsym_1.5.0-3_i386.deb d5d5636335c499831c369dc88e325c54 6464 science optional racon_1.5.0-3_i386.buildinfo a0f261b0b9b0a23ab9d520a3e2c7ed82 3120156 science optional racon_1.5.0-3_i386.deb Tue Mar 26 03:16:04 UTC 2024 I: diffoscope 261 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_1-19733.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.kBpN1lkm/racon_1.5.0-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.kBpN1lkm/racon_1.5.0-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.kBpN1lkm/racon_1.5.0-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.kBpN1lkm/b1/racon_1.5.0-3_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.kBpN1lkm/b2/racon_1.5.0-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.357s) 0.357s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.057s) 0.057s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 646ms CPU time consumed: 646ms Tue Mar 26 03:16:05 UTC 2024 I: diffoscope 261 found no differences in the changes files, and a .buildinfo file also exists. Tue Mar 26 03:16:05 UTC 2024 I: racon from trixie built successfully and reproducibly on i386. Tue Mar 26 03:16:07 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Mar 26 03:16:07 UTC 2024 I: Submitting 8.0K b1/racon_1.5.0-3_i386.buildinfo.asc Tue Mar 26 03:16:07 UTC 2024 I: Submitting 8.0K b2/racon_1.5.0-3_i386.buildinfo.asc Tue Mar 26 03:16:08 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Mar 26 03:16:08 UTC 2024 I: Done submitting .buildinfo files. Tue Mar 26 03:16:08 UTC 2024 I: Removing signed racon_1.5.0-3_i386.buildinfo.asc files: removed './b1/racon_1.5.0-3_i386.buildinfo.asc' removed './b2/racon_1.5.0-3_i386.buildinfo.asc'