Wed May 15 07:31:53 UTC 2024 I: starting to build r-cran-hdf5r/trixie/i386 on jenkins on '2024-05-15 07:31' Wed May 15 07:31:53 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_2/23969/console.log Wed May 15 07:31:53 UTC 2024 I: Downloading source for trixie/r-cran-hdf5r=1.3.9+dfsg-1 --2024-05-15 07:31:53-- http://deb.debian.org/debian/pool/main/r/r-cran-hdf5r/r-cran-hdf5r_1.3.9%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2223 (2.2K) [text/prs.lines.tag] Saving to: ‘r-cran-hdf5r_1.3.9+dfsg-1.dsc’ 0K .. 100% 330M=0s 2024-05-15 07:31:53 (330 MB/s) - ‘r-cran-hdf5r_1.3.9+dfsg-1.dsc’ saved [2223/2223] Wed May 15 07:31:53 UTC 2024 I: r-cran-hdf5r_1.3.9+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: r-cran-hdf5r Binary: r-cran-hdf5r Architecture: any Version: 1.3.9+dfsg-1 Maintainer: Debian R Packages Maintainers Uploaders: Steffen Moeller Homepage: https://cran.r-project.org/package=hdf5r Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-cran-hdf5r Vcs-Git: https://salsa.debian.org/r-pkg-team/r-cran-hdf5r.git Testsuite: autopkgtest, autopkgtest-pkg-r Testsuite-Triggers: r-cran-formatr, r-cran-knitr, r-cran-reshape2, r-cran-rmarkdown, r-cran-testthat Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-r6, r-cran-bit64, libhdf5-dev Package-List: r-cran-hdf5r deb gnu-r optional arch=any Checksums-Sha1: 6927882eb2a01ebb89e8abf6f55fb8de62569b80 1144860 r-cran-hdf5r_1.3.9+dfsg.orig.tar.xz 331bb5cfe1a91233b3f0176681a5a69ea2bc3a42 4652 r-cran-hdf5r_1.3.9+dfsg-1.debian.tar.xz Checksums-Sha256: aeb25b2b9be8428336158ccba1dbc43065d623eec83edf261a62835ddebacaa1 1144860 r-cran-hdf5r_1.3.9+dfsg.orig.tar.xz 84949ce664f31b4eafdd3a1f50ea898e4df520299424cd65b8d134d682f569b4 4652 r-cran-hdf5r_1.3.9+dfsg-1.debian.tar.xz Files: d4393a59d33ad26f78282bdd8afb9fe1 1144860 r-cran-hdf5r_1.3.9+dfsg.orig.tar.xz e25dedb2709e2d6b4b8883ae4dda8366 4652 r-cran-hdf5r_1.3.9+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmWpGikRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH8/w//dIbtcebVkiy7kFf6cyRwPxLKuhXwRMQS aaV81T8vuyib9N2kNOiq4BQYLn8cPuOeiBdAhXawfKmrD0XgNfl+lwLK8hPPA+j0 S9LaikRFkTQkMFBiH0PrPFLgAwlgcz3dKLkI8/397bzUo5bF6gCm7fpH8SKEjvr3 IizfoXILIe7PvMPovaz+JkDLSZT0EWOBzdvt9JYCHh7LdPa65XtGkVSReRBTzxJu tNBcb0z2ENZCi7il+/f/OMnoflPgmp+Cht/cI8e/rGvS+r8o6cUQAbhWe+sP77qI QKrYwUu9xiegSJgiYKW0YVmAFce1Dxbji4niX+UAp/mNvsMvyBx/smWmQq8Nr5Xt rUL2GZNtDGgMcLwWRYiH6qhrDooFvF4oLg31xIzaGwEO5kj1hKYw3YniY9RagmQV zf6cFwlHXcr49Wk3wa0GYGuyu3KAR75fYvR7Ff0xGPoDjusp9F6rwniYqiit2xBZ MRmnYIO86wGmhdPQdDuVyo5HCICbdj9N7cuL/hiI7ZfqY/CYp6MbM24Pj85315BG fPR06zTeEoPAJhQyRfk/xlotTF4grRlPNC5bgg1EcbGegduXIBnRRaUKXoaDqHfm j2ti/dkazhS2BLoyrUmhBDCXdICnanORoXnIfA15/WYKReBm17/3cG7OVnjLBxVP lFzLvMZvZ/U= =BATe -----END PGP SIGNATURE----- Wed May 15 07:31:53 UTC 2024 I: Checking whether the package is not for us Wed May 15 07:31:53 UTC 2024 I: Starting 1st build on remote node ionos6-i386.debian.net. Wed May 15 07:31:53 UTC 2024 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Wed May 15 07:33:05 UTC 2024 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jun 17 01:54:55 -12 2025 I: pbuilder-time-stamp: 1750168495 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-cran-hdf5r_1.3.9+dfsg-1.dsc] I: copying [./r-cran-hdf5r_1.3.9+dfsg.orig.tar.xz] I: copying [./r-cran-hdf5r_1.3.9+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Jan 18 12:31:37 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-cran-hdf5r_1.3.9+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-cran-hdf5r in r-cran-hdf5r-1.3.9+dfsg dpkg-source: info: unpacking r-cran-hdf5r_1.3.9+dfsg.orig.tar.xz dpkg-source: info: unpacking r-cran-hdf5r_1.3.9+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hdf5path.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/44180/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='2faed2067fee48c6a3e444a42823a18e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='44180' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.pTeJd3r5/pbuilderrc_zsS3 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.pTeJd3r5/b1 --logfile b1/build.log r-cran-hdf5r_1.3.9+dfsg-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 16 17:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/44180/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-r6, r-cran-bit64, libhdf5-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19684 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-r6; however: Package r-cran-r6 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-bit64; however: Package r-cran-bit64 is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-13{a} gfortran-13-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-13-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-cpp-103-1t64{a} libhdf5-dev{a} libhdf5-fortran-102t64{a} libhdf5-hl-100t64{a} libhdf5-hl-cpp-100t64{a} libhdf5-hl-fortran-100t64{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libssl-dev{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libsz2{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-cran-bit{a} r-cran-bit64{a} r-cran-r6{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-testthat r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 200 newly installed, 0 to remove and 0 not upgraded. Need to get 113 MB of archives. After unpacking 350 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 tzdata all 2024a-4 [255 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-4 [69.3 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 openssl i386 3.2.1-3 [1364 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3 [42.9 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-4 [1194 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40-8 [97.2 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.1-1 [1421 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 ucf all 3.0043+nmu1 [55.2 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 dctrl-tools i386 2.24-3 [105 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 29 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.191-1+b1 [194 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b3 [727 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 zip i386 3.0-13 [236 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 unzip i386 6.0-28 [166 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libpaper1 i386 1.1.29+b1 [13.0 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libpaper-utils i386 1.1.29+b1 [9280 B] Get: 41 http://deb.debian.org/debian trixie/main i386 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.0-3 [140 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.2-1 [107 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b3 [314 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 libpng16-16t64 i386 1.6.43-5 [286 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libfreetype6 i386 2.13.2+dfsg-1+b4 [449 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-core all 2.37-8 [840 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 fontconfig-config i386 2.15.0-1.1 [317 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 libfontconfig1 i386 2.15.0-1.1 [401 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 libpixman-1-0 i386 0.42.2-1+b1 [555 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libxau6 i386 1:1.0.9-1+b1 [18.5 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 libbsd0 i386 0.12.2-1 [134 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 libxdmcp6 i386 1:1.1.2-3+b1 [24.8 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libxcb1 i386 1.15-1 [148 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libx11-data all 2:1.8.7-1 [328 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libx11-6 i386 2:1.8.7-1+b1 [822 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libxcb-render0 i386 1.15-1 [116 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libxcb-shm0 i386 1.15-1 [106 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 libxrender1 i386 1:0.9.10-1.1+b1 [28.8 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libcairo2 i386 1.18.0-3+b1 [588 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.20.1-6+b1 [36.1 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.1~rc2-1 [22.8 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.20.1-6+b1 [83.2 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] Get: 67 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.20.1-6+b1 [360 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.20.1-6+b1 [145 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-6 [20.5 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-6 [60.6 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.17+dfsg-1 [198 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.61.0-1+b1 [84.0 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.0-4.1+b2 [225 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 libcurl4t64 i386 8.7.1-5 [478 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.20-1 [46.9 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 libglib2.0-0t64 i386 2.80.2-1 [1555 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo i386 1:2.1.5-3 [169 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14-20240330-1 [735 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.0-3 [2167 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 fontconfig i386 2.15.0-1.1 [462 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 libfribidi0 i386 1.0.13-3+b1 [71.8 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 libgraphite2-3 i386 1.3.14-2 [77.7 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 libharfbuzz0b i386 8.3.0-2+b1 [2234 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 libthai-data all 0.1.29-2 [168 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 libdatrie1 i386 0.2.13-3 [39.5 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 libthai0 i386 0.1.29-2 [50.1 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 libpango-1.0-0 i386 1.52.2+ds-1 [226 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 libpangoft2-1.0-0 i386 1.52.2+ds-1 [51.2 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 libpangocairo-1.0-0 i386 1.52.2+ds-1 [35.9 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-4 [171 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 libtcl8.6 i386 8.6.14+dfsg-1 [1095 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 libjbig0 i386 2.1-6.1+b1 [31.8 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 liblerc4 i386 4.0.0+ds-4+b1 [180 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 libsharpyuv0 i386 1.4.0-0.1 [113 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 libwebp7 i386 1.4.0-0.1 [318 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 libtiff6 i386 4.5.1+git230720-4 [338 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 libtirpc3t64 i386 1.3.4+ds-1.3 [90.2 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 libxft2 i386 2.3.6-1+b1 [55.3 kB] Get: 102 http://deb.debian.org/debian trixie/main i386 x11-common all 1:7.7+23 [252 kB] Get: 103 http://deb.debian.org/debian trixie/main i386 libxss1 i386 1:1.2.3-1+b1 [17.3 kB] Get: 104 http://deb.debian.org/debian trixie/main i386 libtk8.6 i386 8.6.14-1 [826 kB] Get: 105 http://deb.debian.org/debian trixie/main i386 libice6 i386 2:1.0.10-1+b1 [58.6 kB] Get: 106 http://deb.debian.org/debian trixie/main i386 libsm6 i386 2:1.2.3-1+b1 [33.9 kB] Get: 107 http://deb.debian.org/debian trixie/main i386 libxt6t64 i386 1:1.2.1-1.2 [193 kB] Get: 108 http://deb.debian.org/debian trixie/main i386 r-base-core i386 4.4.0-2 [28.3 MB] Get: 109 http://deb.debian.org/debian trixie/main i386 libgfortran-13-dev i386 13.2.0-24 [783 kB] Get: 110 http://deb.debian.org/debian trixie/main i386 gfortran-13-i686-linux-gnu i386 13.2.0-24 [11.1 MB] Get: 111 http://deb.debian.org/debian trixie/main i386 gfortran-13 i386 13.2.0-24 [12.2 kB] Get: 112 http://deb.debian.org/debian trixie/main i386 gfortran-i686-linux-gnu i386 4:13.2.0-7 [1280 B] Get: 113 http://deb.debian.org/debian trixie/main i386 gfortran i386 4:13.2.0-7 [1432 B] Get: 114 http://deb.debian.org/debian trixie/main i386 libblas-dev i386 3.12.0-3 [152 kB] Get: 115 http://deb.debian.org/debian trixie/main i386 liblapack-dev i386 3.12.0-3 [4400 kB] Get: 116 http://deb.debian.org/debian trixie/main i386 libncurses6 i386 6.4+20240414-1 [112 kB] Get: 117 http://deb.debian.org/debian trixie/main i386 libncurses-dev i386 6.4+20240414-1 [380 kB] Get: 118 http://deb.debian.org/debian trixie/main i386 libreadline-dev i386 8.2-4 [164 kB] Get: 119 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo-dev i386 1:2.1.5-3 [303 kB] Get: 120 http://deb.debian.org/debian trixie/main i386 libjpeg-dev i386 1:2.1.5-3 [71.9 kB] Get: 121 http://deb.debian.org/debian trixie/main i386 libpcre2-16-0 i386 10.42-4+b1 [244 kB] Get: 122 http://deb.debian.org/debian trixie/main i386 libpcre2-32-0 i386 10.42-4+b1 [233 kB] Get: 123 http://deb.debian.org/debian trixie/main i386 libpcre2-posix3 i386 10.42-4+b1 [55.8 kB] Get: 124 http://deb.debian.org/debian trixie/main i386 libpcre2-dev i386 10.42-4+b1 [759 kB] Get: 125 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg-3.1 [915 kB] Get: 126 http://deb.debian.org/debian trixie/main i386 libpng-dev i386 1.6.43-5 [369 kB] Get: 127 http://deb.debian.org/debian trixie/main i386 libbz2-dev i386 1.0.8-5.1 [31.4 kB] Get: 128 http://deb.debian.org/debian trixie/main i386 liblzma-dev i386 5.6.1+really5.4.5-1 [304 kB] Get: 129 http://deb.debian.org/debian trixie/main i386 icu-devtools i386 72.1-4+b1 [216 kB] Get: 130 http://deb.debian.org/debian trixie/main i386 libicu-dev i386 72.1-4+b1 [10.6 MB] Get: 131 http://deb.debian.org/debian trixie/main i386 libxmuu1 i386 2:1.1.3-3+b2 [21.9 kB] Get: 132 http://deb.debian.org/debian trixie/main i386 xauth i386 1:1.1.2-1 [36.7 kB] Get: 133 http://deb.debian.org/debian trixie/main i386 libpkgconf3 i386 1.8.1-1+b2 [38.5 kB] Get: 134 http://deb.debian.org/debian trixie/main i386 pkgconf-bin i386 1.8.1-1+b2 [30.2 kB] Get: 135 http://deb.debian.org/debian trixie/main i386 pkgconf i386 1.8.1-1+b2 [26.2 kB] Get: 136 http://deb.debian.org/debian trixie/main i386 libtirpc-dev i386 1.3.4+ds-1.3 [199 kB] Get: 137 http://deb.debian.org/debian trixie/main i386 libdeflate-dev i386 1.20-1 [56.0 kB] Get: 138 http://deb.debian.org/debian trixie/main i386 r-base-dev all 4.4.0-2 [4512 B] Get: 139 http://deb.debian.org/debian trixie/main i386 libfile-which-perl all 1.27-2 [15.1 kB] Get: 140 http://deb.debian.org/debian trixie/main i386 libswitch-perl all 2.17-3 [20.3 kB] Get: 141 http://deb.debian.org/debian trixie/main i386 libclone-perl i386 0.46-1+b2 [13.9 kB] Get: 142 http://deb.debian.org/debian trixie/main i386 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 143 http://deb.debian.org/debian trixie/main i386 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 144 http://deb.debian.org/debian trixie/main i386 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 145 http://deb.debian.org/debian trixie/main i386 libio-html-perl all 1.004-3 [16.2 kB] Get: 146 http://deb.debian.org/debian trixie/main i386 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 147 http://deb.debian.org/debian trixie/main i386 liburi-perl all 5.28-1 [98.6 kB] Get: 148 http://deb.debian.org/debian trixie/main i386 libhttp-message-perl all 6.45-1 [82.0 kB] Get: 149 http://deb.debian.org/debian trixie/main i386 libparams-util-perl i386 1.102-3 [24.4 kB] Get: 150 http://deb.debian.org/debian trixie/main i386 libsub-install-perl all 0.929-1 [10.5 kB] Get: 151 http://deb.debian.org/debian trixie/main i386 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 152 http://deb.debian.org/debian trixie/main i386 libb-hooks-op-check-perl i386 0.22-3+b1 [10.7 kB] Get: 153 http://deb.debian.org/debian trixie/main i386 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get: 154 http://deb.debian.org/debian trixie/main i386 libdevel-callchecker-perl i386 0.009-1 [15.9 kB] Get: 155 http://deb.debian.org/debian trixie/main i386 libparams-classify-perl i386 0.015-2+b3 [23.1 kB] Get: 156 http://deb.debian.org/debian trixie/main i386 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 157 http://deb.debian.org/debian trixie/main i386 libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 158 http://deb.debian.org/debian trixie/main i386 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 159 http://deb.debian.org/debian trixie/main i386 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 160 http://deb.debian.org/debian trixie/main i386 libclass-load-perl all 0.25-2 [15.3 kB] Get: 161 http://deb.debian.org/debian trixie/main i386 libclass-load-xs-perl i386 0.10-2+b3 [14.3 kB] Get: 162 http://deb.debian.org/debian trixie/main i386 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 163 http://deb.debian.org/debian trixie/main i386 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 164 http://deb.debian.org/debian trixie/main i386 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 165 http://deb.debian.org/debian trixie/main i386 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 166 http://deb.debian.org/debian trixie/main i386 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 167 http://deb.debian.org/debian trixie/main i386 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 168 http://deb.debian.org/debian trixie/main i386 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 169 http://deb.debian.org/debian trixie/main i386 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 170 http://deb.debian.org/debian trixie/main i386 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 171 http://deb.debian.org/debian trixie/main i386 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 172 http://deb.debian.org/debian trixie/main i386 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 173 http://deb.debian.org/debian trixie/main i386 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 174 http://deb.debian.org/debian trixie/main i386 libpackage-stash-xs-perl i386 0.30-1+b3 [20.5 kB] Get: 175 http://deb.debian.org/debian trixie/main i386 libmoose-perl i386 2.2207-1+b1 [767 kB] Get: 176 http://deb.debian.org/debian trixie/main i386 libvariable-magic-perl i386 0.64-1 [45.2 kB] Get: 177 http://deb.debian.org/debian trixie/main i386 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 178 http://deb.debian.org/debian trixie/main i386 libsub-identify-perl i386 0.14-3+b2 [11.2 kB] Get: 179 http://deb.debian.org/debian trixie/main i386 libsub-name-perl i386 0.27-1+b2 [12.6 kB] Get: 180 http://deb.debian.org/debian trixie/main i386 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 181 http://deb.debian.org/debian trixie/main i386 libcurl3t64-gnutls i386 8.7.1-5 [468 kB] Get: 182 http://deb.debian.org/debian trixie/main i386 libwww-curl-perl i386 4.17-10+b2 [61.6 kB] Get: 183 http://deb.debian.org/debian trixie/main i386 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 184 http://deb.debian.org/debian trixie/main i386 dh-r all 20231212 [42.2 kB] Get: 185 http://deb.debian.org/debian trixie/main i386 hdf5-helpers i386 1.10.10+repack-3.3 [23.4 kB] Get: 186 http://deb.debian.org/debian trixie/main i386 libaec0 i386 1.1.3-1 [24.5 kB] Get: 187 http://deb.debian.org/debian trixie/main i386 libsz2 i386 1.1.3-1 [7824 B] Get: 188 http://deb.debian.org/debian trixie/main i386 libaec-dev i386 1.1.3-1 [22.4 kB] Get: 189 http://deb.debian.org/debian trixie/main i386 libcurl4-openssl-dev i386 8.7.1-5 [600 kB] Get: 190 http://deb.debian.org/debian trixie/main i386 libhdf5-103-1t64 i386 1.10.10+repack-3.3 [1178 kB] Get: 191 http://deb.debian.org/debian trixie/main i386 libhdf5-cpp-103-1t64 i386 1.10.10+repack-3.3 [138 kB] Get: 192 http://deb.debian.org/debian trixie/main i386 libhdf5-fortran-102t64 i386 1.10.10+repack-3.3 [98.2 kB] Get: 193 http://deb.debian.org/debian trixie/main i386 libhdf5-hl-100t64 i386 1.10.10+repack-3.3 [74.4 kB] Get: 194 http://deb.debian.org/debian trixie/main i386 libhdf5-hl-fortran-100t64 i386 1.10.10+repack-3.3 [41.8 kB] Get: 195 http://deb.debian.org/debian trixie/main i386 libhdf5-hl-cpp-100t64 i386 1.10.10+repack-3.3 [21.8 kB] Get: 196 http://deb.debian.org/debian trixie/main i386 libssl-dev i386 3.2.1-3 [2744 kB] Get: 197 http://deb.debian.org/debian trixie/main i386 libhdf5-dev i386 1.10.10+repack-3.3 [2772 kB] Get: 198 http://deb.debian.org/debian trixie/main i386 r-cran-bit i386 4.0.5-1 [1070 kB] Get: 199 http://deb.debian.org/debian trixie/main i386 r-cran-bit64 i386 4.0.5-1 [470 kB] Get: 200 http://deb.debian.org/debian trixie/main i386 r-cran-r6 all 2.5.1-1 [105 kB] Fetched 113 MB in 2s (46.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19684 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.2.1-3_i386.deb ... Unpacking openssl (3.2.1-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../006-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../009-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-4_i386.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.40-8_i386.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../012-libpipeline1_1.5.7-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.12.1-1_i386.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../015-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../016-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../017-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../018-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../019-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../020-dctrl-tools_2.24-3_i386.deb ... Unpacking dctrl-tools (2.24-3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../021-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... 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Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-4) ... Selecting previously unselected package libtcl8.6:i386. Preparing to unpack .../092-libtcl8.6_8.6.14+dfsg-1_i386.deb ... Unpacking libtcl8.6:i386 (8.6.14+dfsg-1) ... Selecting previously unselected package libjbig0:i386. Preparing to unpack .../093-libjbig0_2.1-6.1+b1_i386.deb ... Unpacking libjbig0:i386 (2.1-6.1+b1) ... Selecting previously unselected package liblerc4:i386. 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Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3 to /lib/i386-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3.0.0 to /lib/i386-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:i386 (1.3.4+ds-1.3) ... Selecting previously unselected package libxft2:i386. Preparing to unpack .../100-libxft2_2.3.6-1+b1_i386.deb ... Unpacking libxft2:i386 (2.3.6-1+b1) ... Selecting previously unselected package x11-common. Preparing to unpack .../101-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package libxss1:i386. Preparing to unpack .../102-libxss1_1%3a1.2.3-1+b1_i386.deb ... Unpacking libxss1:i386 (1:1.2.3-1+b1) ... Selecting previously unselected package libtk8.6:i386. Preparing to unpack .../103-libtk8.6_8.6.14-1_i386.deb ... Unpacking libtk8.6:i386 (8.6.14-1) ... Selecting previously unselected package libice6:i386. 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Setting up libclone-perl:i386 (0.46-1+b2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-3+b2) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up unzip (6.0-28) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:i386 (1.1.0-2+b3) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:i386 (1:5.45-3) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.31-2) ... Setting up libpsl5t64:i386 (0.21.2-1.1) ... Setting up libnghttp2-14:i386 (1.61.0-1+b1) ... Setting up libdeflate0:i386 (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libcom-err2:i386 (1.47.1~rc2-1) ... Setting up file (1:5.45-3) ... Setting up libjbig0:i386 (2.1-6.1+b1) ... Setting up libpcre2-16-0:i386 (10.42-4+b1) ... Setting up libaec0:i386 (1.1.3-1) ... Setting up libsub-install-perl (0.929-1) ... Setting up libelf1t64:i386 (0.191-1+b1) ... Setting up libkrb5support0:i386 (1.20.1-6+b1) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-6) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Jun 17 13:55:21 UTC 2025. Universal Time is now: Tue Jun 17 13:55:21 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-13) ... Setting up libpackage-stash-xs-perl:i386 (0.30-1+b3) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:i386 (10.42-4+b1) ... Setting up libglib2.0-0t64:i386 (2.80.2-1) ... No schema files found: doing nothing. Setting up libblas3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libpkgconf3:i386 (1.8.1-1+b2) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libjpeg62-turbo:i386 (1:2.1.5-3) ... Setting up libswitch-perl (2.17-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjpeg62-turbo-dev:i386 (1:2.1.5-3) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libncurses6:i386 (6.4+20240414-1) ... Setting up libfribidi0:i386 (1.0.13-3+b1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libssl-dev:i386 (3.2.1-3) ... Setting up libpng16-16t64:i386 (1.6.43-5) ... Setting up libvariable-magic-perl (0.64-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libtcl8.6:i386 (8.6.14+dfsg-1) ... Setting up autopoint (0.21-14) ... Setting up libb-hooks-op-check-perl:i386 (0.22-3+b1) ... Setting up icu-devtools (72.1-4+b1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up pkgconf-bin (1.8.1-1+b2) ... Setting up libk5crypto3:i386 (1.20.1-6+b1) ... Setting up libparams-util-perl (1.102-3) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-6) ... Setting up libgfortran5:i386 (14-20240330-1) ... Setting up autoconf (2.71-3) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libwebp7:i386 (1.4.0-0.1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:i386 (5.6.1+really5.4.5-1) ... Setting up libsub-name-perl:i386 (0.27-1+b2) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg-3.1) ... Setting up libpcre2-posix3:i386 (10.42-4+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libtiff6:i386 (4.5.1+git230720-4) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libthai-data (0.1.29-2) ... Setting up libdevel-globaldestruction-perl (0.14-4) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libkrb5-3:i386 (1.20.1-6+b1) ... Setting up libssh2-1t64:i386 (1.11.0-4.1+b2) ... Setting up libgfortran-13-dev:i386 (13.2.0-24) ... Setting up openssl (3.2.1-3) ... Setting up libbsd0:i386 (0.12.2-1) ... Setting up libdeflate-dev:i386 (1.20-1) ... Setting up readline-common (8.2-4) ... Setting up libicu-dev:i386 (72.1-4+b1) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3+b3) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.28-1) ... Setting up libblas-dev:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up libsz2:i386 (1.1.3-1) ... Setting up dctrl-tools (2.24-3) ... Setting up libbz2-dev:i386 (1.0.8-5.1) ... Setting up gfortran-13-i686-linux-gnu (13.2.0-24) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libice6:i386 (2:1.0.10-1+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libxdmcp6:i386 (1:1.1.2-3+b1) ... Setting up liblapack3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libncurses-dev:i386 (6.4+20240414-1) ... Setting up libxcb1:i386 (1.15-1) ... Setting up gettext (0.21-14+b1) ... Setting up libpcre2-dev:i386 (10.42-4+b1) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:i386 (1.15-1) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libpng-dev:i386 (1.6.43-5) ... Setting up libaec-dev:i386 (1.1.3-1) ... Setting up libjpeg-dev:i386 (1:2.1.5-3) ... Setting up libxcb-shm0:i386 (1.15-1) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libdevel-callchecker-perl:i386 (0.009-1) ... Setting up libldap-2.5-0:i386 (2.5.17+dfsg-1) ... Setting up pkgconf:i386 (1.8.1-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:i386 (0.1.29-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libfreetype6:i386 (2.13.2+dfsg-1+b4) ... Setting up gfortran-i686-linux-gnu (4:13.2.0-7) ... Setting up gfortran-13 (13.2.0-24) ... Setting up liblapack-dev:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up libgssapi-krb5-2:i386 (1.20.1-6+b1) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0043+nmu1) ... Setting up libreadline8t64:i386 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up libx11-6:i386 (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:i386 (8.3.0-2+b1) ... Setting up libfontconfig1:i386 (2.15.0-1.1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libsm6:i386 (2:1.2.3-1+b1) ... Setting up libxmuu1:i386 (2:1.1.3-3+b2) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libpaper1:i386 (1.1.29+b1) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libxrender1:i386 (1:0.9.10-1.1+b1) ... Setting up libcurl4t64:i386 (8.7.1-5) ... Setting up libtirpc3t64:i386 (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl:i386 (0.015-2+b3) ... Setting up libpango-1.0-0:i386 (1.52.2+ds-1) ... Setting up libcurl3t64-gnutls:i386 (8.7.1-5) ... Setting up libxext6:i386 (2:1.3.4-1+b1) ... Setting up libwww-curl-perl:i386 (4.17-10+b2) ... Setting up libpaper-utils (1.1.29+b1) ... Setting up libreadline-dev:i386 (8.2-4) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:13.2.0-7) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:i386 (1.18.0-3+b1) ... Setting up libtirpc-dev:i386 (1.3.4+ds-1.3) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libcurl4-openssl-dev:i386 (8.7.1-5) ... Setting up libxt6t64:i386 (1:1.2.1-1.2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up xauth (1:1.1.2-1) ... Setting up libxss1:i386 (1:1.2.3-1+b1) ... Setting up libpangoft2-1.0-0:i386 (1.52.2+ds-1) ... Setting up libhdf5-103-1t64:i386 (1.10.10+repack-3.3) ... Setting up libpangocairo-1.0-0:i386 (1.52.2+ds-1) ... Setting up libhdf5-hl-100t64:i386 (1.10.10+repack-3.3) ... Setting up libxft2:i386 (2.3.6-1+b1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libtk8.6:i386 (8.6.14-1) ... Setting up libhdf5-cpp-103-1t64:i386 (1.10.10+repack-3.3) ... Setting up libhdf5-fortran-102t64:i386 (1.10.10+repack-3.3) ... Setting up debhelper (13.15.3) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.4.0-2) ... Creating config file /etc/R/Renviron with new version Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b3) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up libhdf5-hl-cpp-100t64:i386 (1.10.10+repack-3.3) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up r-base-dev (4.4.0-2) ... Setting up libmoose-perl:i386 (2.2207-1+b1) ... Setting up libhdf5-hl-fortran-100t64:i386 (1.10.10+repack-3.3) ... Setting up r-cran-bit (4.0.5-1) ... Setting up r-cran-bit64 (4.0.5-1) ... Setting up libhdf5-dev (1.10.10+repack-3.3) ... update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up dh-r (20231212) ... Processing triggers for libc-bin (2.38-10) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-cran-hdf5r-1.3.9+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-cran-hdf5r_1.3.9+dfsg-1_source.changes dpkg-buildpackage: info: source package r-cran-hdf5r dpkg-buildpackage: info: source version 1.3.9+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem R debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/r-cran-hdf5r-1.3.9+dfsg' dh_auto_clean rm -f src/Wrapper_auto_* rm -f src/const_export.c src/const_export.h src/datatype_export.c src/datatype_export.h src/export_auto.h rm -f config.log config.status src/HelperStructs.h src/Makevars make[1]: Leaving directory '/build/reproducible-path/r-cran-hdf5r-1.3.9+dfsg' dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-cran-hdf5r/ -O--buildsystem=R I: R packages needed for DEP8: testthat, knitr, rmarkdown, reshape2, formatr I: R Package: hdf5r Version: 1.3.9 I: Building using R version 4.4.0-2 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Thu, 18 Jan 2024 13:24:20 +0100 mkdir -p /build/reproducible-path/r-cran-hdf5r-1.3.9\+dfsg/debian/r-cran-hdf5r/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-cran-hdf5r-1.3.9\+dfsg/debian/r-cran-hdf5r/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 18 Jan 2024 13:24:20 +0100'" * installing *source* package 'hdf5r' ... file 'inst/doc/hdf5r.html' is missing file 'src/Makevars.in' has the wrong MD5 checksum ** using staged installation checking for a sed that does not truncate output... /bin/sed checking for gawk... no checking for mawk... mawk checking for grep that handles long lines and -e... /usr/bin/grep checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for h5cc... /usr/bin/h5cc checking for HDF5 libraries... yes (version 1.10.10) checking for hdf5.h... yes checking for H5Fcreate in -lhdf5... yes checking for hdf5_hl.h... yes checking for H5LTpath_valid in -lhdf5_hl... yes checking for main in -lhdf5_hl... yes checking for matching HDF5 Fortran wrapper... /usr/bin/h5fc Found hdf5 with version: 1.10.10 checking for ggrep... /usr/bin/grep checking whether /usr/bin/grep accepts -o... yes checking for ggrep... (cached) /usr/bin/grep checking whether /usr/bin/grep accepts -o... yes Using variables: HDF5_LIBS= -L/usr/lib/i386-linux-gnu/hdf5/serial -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -L. -lhdf5_hl -lhdf5 -lz -lm HDF5_CFLAGS= HDF5_CPPFLAGS=-I/usr/include/hdf5/serial configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: 'gcc (Debian 13.2.0-24) 13.2.0' make[1]: Entering directory '/build/reproducible-path/r-cran-hdf5r-1.3.9+dfsg/src' cp 1_10_3/*.c 1_10_3/*.h . if [ "1.10.6" != "" ]; then patch -p2 < patch_1.10.6; fi patching file datatype_export.c Hunk #1 succeeded at 1901 (offset 1 line). gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c const_export.c -o const_export.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c datatype_export.c -o datatype_export.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5A.c -o Wrapper_auto_H5A.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5.c -o Wrapper_auto_H5.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5D.c -o Wrapper_auto_H5D.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5DS.c -o Wrapper_auto_H5DS.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5E.c -o Wrapper_auto_H5E.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5F.c -o Wrapper_auto_H5F.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5G.c -o Wrapper_auto_H5G.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5I.c -o Wrapper_auto_H5I.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5IM.c -o Wrapper_auto_H5IM.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5L.c -o Wrapper_auto_H5L.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5LT.c -o Wrapper_auto_H5LT.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5O.c -o Wrapper_auto_H5O.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5P.c -o Wrapper_auto_H5P.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5R.c -o Wrapper_auto_H5R.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5S.c -o Wrapper_auto_H5S.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5TB.c -o Wrapper_auto_H5TB.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5T.c -o Wrapper_auto_H5T.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5Z.c -o Wrapper_auto_H5Z.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5FDcore.c -o Wrapper_auto_H5FDcore.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5FDfamily.c -o Wrapper_auto_H5FDfamily.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5FDlog.c -o Wrapper_auto_H5FDlog.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5FDsec2.c -o Wrapper_auto_H5FDsec2.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5FDstdio.c -o Wrapper_auto_H5FDstdio.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c convert.c -o convert.o convert.c: In function 'RToH5_INTEGER': convert.c:262:11: warning: format '%lld' expects argument of type 'long long int', but argument 2 has type 'R_xlen_t' {aka 'int'} [-Wformat=] 262 | error("Length of integer vector not as expected: Actual: %" PRId64 "; Expected %" PRId64 "\n", XLENGTH(_Robj), nelem); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~ | | | R_xlen_t {aka int} In file included from /usr/include/hdf5/serial/H5public.h:53, from /usr/include/hdf5/serial/hdf5.h:21, from global.h:23, from convert.h:28, from convert.c:20: /usr/include/inttypes.h:57:41: note: format string is defined here 57 | # define PRId64 __PRI64_PREFIX "d" convert.c:262:11: warning: format '%lld' expects argument of type 'long long int', but argument 3 has type 'R_xlen_t' {aka 'int'} [-Wformat=] 262 | error("Length of integer vector not as expected: Actual: %" PRId64 "; Expected %" PRId64 "\n", XLENGTH(_Robj), nelem); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ | | | R_xlen_t {aka int} /usr/include/inttypes.h:57:41: note: format string is defined here 57 | # define PRId64 __PRI64_PREFIX "d" gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c hdf5r_init.c -o hdf5r_init.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c H5Error.c -o H5Error.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c H5ls.c -o H5ls.o gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_manual_H5T.c -o Wrapper_manual_H5T.o gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o hdf5r.so const_export.o datatype_export.o Wrapper_auto_H5A.o Wrapper_auto_H5.o Wrapper_auto_H5D.o Wrapper_auto_H5DS.o Wrapper_auto_H5E.o Wrapper_auto_H5F.o Wrapper_auto_H5G.o Wrapper_auto_H5I.o Wrapper_auto_H5IM.o Wrapper_auto_H5L.o Wrapper_auto_H5LT.o Wrapper_auto_H5O.o Wrapper_auto_H5P.o Wrapper_auto_H5R.o Wrapper_auto_H5S.o Wrapper_auto_H5TB.o Wrapper_auto_H5T.o Wrapper_auto_H5Z.o Wrapper_auto_H5FDcore.o Wrapper_auto_H5FDfamily.o Wrapper_auto_H5FDlog.o Wrapper_auto_H5FDsec2.o Wrapper_auto_H5FDstdio.o convert.o hdf5r_init.o H5Error.o H5ls.o Wrapper_manual_H5T.o -L/usr/lib/i386-linux-gnu/hdf5/serial -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -L. -lhdf5_hl -lhdf5 -lz -lm -IPKG_CPPFLAGS -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/reproducible-path/r-cran-hdf5r-1.3.9+dfsg/src' make[1]: Entering directory '/build/reproducible-path/r-cran-hdf5r-1.3.9+dfsg/src' make[1]: Leaving directory '/build/reproducible-path/r-cran-hdf5r-1.3.9+dfsg/src' installing to /build/reproducible-path/r-cran-hdf5r-1.3.9+dfsg/debian/r-cran-hdf5r/usr/lib/R/site-library/00LOCK-r-cran-hdf5r-1.3.9+dfsg/00new/hdf5r/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hdf5r) rm -f /build/reproducible-path/r-cran-hdf5r-1.3.9\+dfsg/debian/r-cran-hdf5r/usr/lib/R/site-library/hdf5r/LICENSE W: Ignoring specified R dependency: R (>= 3.2.2) I: Using r-cran-testthat for Recommends:testthat I: Using r-cran-knitr for Recommends:knitr I: Using r-cran-rmarkdown for Recommends:rmarkdown I: Using r-cran-reshape2 for Recommends:reshape2 I: Using r-cran-formatr for Recommends:formatr W: Cannot find a debian package for Suggests:nycflights13 I: Using r-cran-r6 for Imports:R6 I: Using r-cran-bit64 for Imports:bit64 I: Use r-cran-hdf5r as Debian binary package for variables substitution debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/r-cran-hdf5r-1.3.9+dfsg' dh_install find debian -name m4 -type d | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/r-cran-hdf5r-1.3.9+dfsg' dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/r-cran-hdf5r-1.3.9+dfsg' dh_fixperms find debian \( -name "*.txt" -o -name "*.R" -o -name "*.h" -o -name "*.csv" -o -name "*.brew" -o -name "*.Rmd" -o -name README \) -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/r-cran-hdf5r-1.3.9+dfsg' dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-cran-hdf5r' in '../r-cran-hdf5r_1.3.9+dfsg-1_i386.deb'. dpkg-deb: building package 'r-cran-hdf5r-dbgsym' in '../r-cran-hdf5r-dbgsym_1.3.9+dfsg-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../r-cran-hdf5r_1.3.9+dfsg-1_i386.buildinfo dpkg-genchanges --build=binary -O../r-cran-hdf5r_1.3.9+dfsg-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/44180 and its subdirectories I: Current time: Tue Jun 17 01:56:03 -12 2025 I: pbuilder-time-stamp: 1750168563 Wed May 15 07:33:06 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Wed May 15 07:33:06 UTC 2024 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Wed May 15 07:34:58 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net. Wed May 15 07:34:59 UTC 2024 I: r-cran-hdf5r_1.3.9+dfsg-1_i386.changes: Format: 1.8 Date: Thu, 18 Jan 2024 13:24:20 +0100 Source: r-cran-hdf5r Binary: r-cran-hdf5r r-cran-hdf5r-dbgsym Architecture: i386 Version: 1.3.9+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Andreas Tille Description: r-cran-hdf5r - GNU R interface to the 'HDF5' binary data format Changes: r-cran-hdf5r (1.3.9+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version Checksums-Sha1: 04afe21b1b6e1a56c632a2d2eb86cdd10c79f7a5 62280 r-cran-hdf5r-dbgsym_1.3.9+dfsg-1_i386.deb 5a1416be9a04185ad08c907cc58183a6eb32f7f3 10746 r-cran-hdf5r_1.3.9+dfsg-1_i386.buildinfo 966d95a5b565abfce42d1d50138930a11fb62bcb 1987508 r-cran-hdf5r_1.3.9+dfsg-1_i386.deb Checksums-Sha256: 9bd18fcefb75bf38f3a3ecae3814ecbdde914cc7c5724242fd005bd886ca740c 62280 r-cran-hdf5r-dbgsym_1.3.9+dfsg-1_i386.deb 1f7eb3d0cfdd1cf2c89c6f631dbbed9035a0db3558de452d11cda31f8293b364 10746 r-cran-hdf5r_1.3.9+dfsg-1_i386.buildinfo 0da077ece7fa397c6853ec744c9cce9a3ff30d3788b65cfa34cf704d6cda5924 1987508 r-cran-hdf5r_1.3.9+dfsg-1_i386.deb Files: 79eb4c8ae2a81ccf20c45cbc45218829 62280 debug optional r-cran-hdf5r-dbgsym_1.3.9+dfsg-1_i386.deb 6bb2ca02535e1cfcfd86cb69fc63715e 10746 gnu-r optional r-cran-hdf5r_1.3.9+dfsg-1_i386.buildinfo 4d050a9e48c57fbaf63ae7ab41824446 1987508 gnu-r optional r-cran-hdf5r_1.3.9+dfsg-1_i386.deb Wed May 15 07:35:00 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_2-23969.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.pTeJd3r5/r-cran-hdf5r_1.3.9+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.pTeJd3r5/r-cran-hdf5r_1.3.9+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.pTeJd3r5/r-cran-hdf5r_1.3.9+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.pTeJd3r5/b1/r-cran-hdf5r_1.3.9+dfsg-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.pTeJd3r5/b2/r-cran-hdf5r_1.3.9+dfsg-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.388s) 0.388s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.037s) 0.037s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 727ms CPU time consumed: 726ms Wed May 15 07:35:01 UTC 2024 I: diffoscope 266 found no differences in the changes files, and a .buildinfo file also exists. Wed May 15 07:35:01 UTC 2024 I: r-cran-hdf5r from trixie built successfully and reproducibly on i386. Wed May 15 07:35:02 UTC 2024 I: Submitting .buildinfo files to external archives: Wed May 15 07:35:02 UTC 2024 I: Submitting 12K b1/r-cran-hdf5r_1.3.9+dfsg-1_i386.buildinfo.asc Wed May 15 07:35:03 UTC 2024 I: Submitting 12K b2/r-cran-hdf5r_1.3.9+dfsg-1_i386.buildinfo.asc Wed May 15 07:35:04 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed May 15 07:35:04 UTC 2024 I: Done submitting .buildinfo files. Wed May 15 07:35:04 UTC 2024 I: Removing signed r-cran-hdf5r_1.3.9+dfsg-1_i386.buildinfo.asc files: removed './b1/r-cran-hdf5r_1.3.9+dfsg-1_i386.buildinfo.asc' removed './b2/r-cran-hdf5r_1.3.9+dfsg-1_i386.buildinfo.asc'