Thu Nov 14 02:44:52 UTC 2024 I: starting to build r-bioc-ggbio/trixie/i386 on jenkins on '2024-11-14 02:44' Thu Nov 14 02:44:52 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_1/43988/console.log Thu Nov 14 02:44:52 UTC 2024 I: Downloading source for trixie/r-bioc-ggbio=1.52.0-1 --2024-11-14 02:44:53-- http://deb.debian.org/debian/pool/main/r/r-bioc-ggbio/r-bioc-ggbio_1.52.0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2767 (2.7K) [text/prs.lines.tag] Saving to: ‘r-bioc-ggbio_1.52.0-1.dsc’ 0K .. 100% 313M=0s 2024-11-14 02:44:53 (313 MB/s) - ‘r-bioc-ggbio_1.52.0-1.dsc’ saved [2767/2767] Thu Nov 14 02:44:53 UTC 2024 I: r-bioc-ggbio_1.52.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-ggbio Binary: r-bioc-ggbio Architecture: all Version: 1.52.0-1 Maintainer: Debian R Packages Maintainers Uploaders: Steffen Moeller Homepage: https://bioconductor.org/packages/ggbio/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-ggbio Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-ggbio.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.50.0), r-cran-ggplot2, r-cran-gridextra, r-cran-scales, r-cran-reshape2, r-cran-gtable, r-cran-hmisc, r-bioc-biovizbase (>= 1.52.0), r-bioc-biobase (>= 2.64.0), r-bioc-s4vectors (>= 0.42.1), r-bioc-iranges (>= 2.38.1), r-bioc-genomeinfodb (>= 1.40.1), r-bioc-genomicranges (>= 1.56.1), r-bioc-summarizedexperiment (>= 1.34.0), r-bioc-biostrings (>= 2.72.1), r-bioc-rsamtools (>= 2.20.0), r-bioc-genomicalignments (>= 1.40.0), r-bioc-bsgenome (>= 1.72.0), r-bioc-variantannotation (>= 1.50.0), r-bioc-rtracklayer (>= 1.64.0), r-bioc-genomicfeatures (>= 1.56.0), r-bioc-organismdbi (>= 1.46.0), r-cran-ggally, r-bioc-ensembldb (>= 2.28.0), r-bioc-annotationdbi (>= 1.66.0), r-bioc-annotationfilter (>= 1.28.0), r-cran-rlang Package-List: r-bioc-ggbio deb gnu-r optional arch=all Checksums-Sha1: abd90706338034bff8b120f2e76e7b388bf6c874 3245439 r-bioc-ggbio_1.52.0.orig.tar.gz ad5f57c6fc5567d8bddd73e0715a80863096974d 5808 r-bioc-ggbio_1.52.0-1.debian.tar.xz Checksums-Sha256: 37ac8ba40da018bc7c4162198310b563dc878a3b26a107eabfe9f8af100cd03c 3245439 r-bioc-ggbio_1.52.0.orig.tar.gz fdfcc680278dc7735e333e102abe5821dc54559291e0a347bbbd63ad626484cb 5808 r-bioc-ggbio_1.52.0-1.debian.tar.xz Files: 5e949a2d25db2001f3e6832cfc5b08d0 3245439 r-bioc-ggbio_1.52.0.orig.tar.gz da3ea2e09aad0e1f876bd47dad2a2381 5808 r-bioc-ggbio_1.52.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmbB0nIACgkQPCZ2P2xn 5uJa/xAAlC1737osTDDvQc4g8KKrWYmWdGv0yJohKEdTmzextKhpd7Vm+Wm8fN1D kPDlbJD6th7o+9oviiZxSJZylMU5NMVUTcECMuUYJwvYAzZYlHtmgCSUWswxRSg6 OmAr9oItELPGYgh2S3/3o4Wp8VOEs11JOP5chuc3NZEBBsAY7YeiM7HFATu3/2jX CKCEhRWPJViRZs1+iPYaWIjOnGopMyiV+Ru5kUBrEnMxOfYJllv/FWfhWkO9GIU+ sQ2IlFcjBq+q0WP1U3FssEEQQU45Z8lHgtI6PdFieNKdHHJiJIICOA6qqEUnLYaO ebO/oilhbqE+R895YGtxbED+tYq37ZYywoCVR13K8C7Ae7mlClrm6FHcK4dM7Th+ dVpm1FKFF+YrCP6iCBObL5U0VSaAr3DVUnA2CxALcuUQtk/NKCcDMziLvvpjZEr5 ddklR2Sr7RQtfNriTkdhp37+uy93F7i8/WUeNJXDOm2H4XJZrRrhFqOP7wAKGPym JxUuO8Bf2Ql4WmlW4AZMe5fnh5g0QVpzVjvYdlLNN2EfL29s5a018iOnLn9ldWi2 FnXLikTeBlTpO15OWQ9Jb+BxXSnHiJQEzLxVwi1px+89TWXC/JNHWCOD8prDDbGN zTZxpROZHEdCv0shXJT/BPyTak3exvgGtuJzE/pDvR7KGNOZJG0= =Vbfp -----END PGP SIGNATURE----- Thu Nov 14 02:44:53 UTC 2024 I: Checking whether the package is not for us Thu Nov 14 02:44:53 UTC 2024 I: Starting 1st build on remote node ionos2-i386.debian.net. Thu Nov 14 02:44:53 UTC 2024 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Thu Nov 14 02:45:17 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Nov 13 14:44:55 -12 2024 I: pbuilder-time-stamp: 1731552295 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-bioc-ggbio_1.52.0-1.dsc] I: copying [./r-bioc-ggbio_1.52.0.orig.tar.gz] I: copying [./r-bioc-ggbio_1.52.0-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Aug 18 10:52:34 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-ggbio_1.52.0-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-ggbio in r-bioc-ggbio-1.52.0 dpkg-source: info: unpacking r-bioc-ggbio_1.52.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-ggbio_1.52.0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/55701/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='194f87c0d58b4a9e9b2755707e63a195' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='55701' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.caB1bXtX/pbuilderrc_xbTf --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.caB1bXtX/b1 --logfile b1/build.log r-bioc-ggbio_1.52.0-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos2-i386 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/55701/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.50.0), r-cran-ggplot2, r-cran-gridextra, r-cran-scales, r-cran-reshape2, r-cran-gtable, r-cran-hmisc, r-bioc-biovizbase (>= 1.52.0), r-bioc-biobase (>= 2.64.0), r-bioc-s4vectors (>= 0.42.1), r-bioc-iranges (>= 2.38.1), r-bioc-genomeinfodb (>= 1.40.1), r-bioc-genomicranges (>= 1.56.1), r-bioc-summarizedexperiment (>= 1.34.0), r-bioc-biostrings (>= 2.72.1), r-bioc-rsamtools (>= 2.20.0), r-bioc-genomicalignments (>= 1.40.0), r-bioc-bsgenome (>= 1.72.0), r-bioc-variantannotation (>= 1.50.0), r-bioc-rtracklayer (>= 1.64.0), r-bioc-genomicfeatures (>= 1.56.0), r-bioc-organismdbi (>= 1.46.0), r-cran-ggally, r-bioc-ensembldb (>= 2.28.0), r-bioc-annotationdbi (>= 1.66.0), r-bioc-annotationfilter (>= 1.28.0), r-cran-rlang dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19958 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics (>= 0.50.0); however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-gridextra; however: Package r-cran-gridextra is not installed. pbuilder-satisfydepends-dummy depends on r-cran-scales; however: Package r-cran-scales is not installed. pbuilder-satisfydepends-dummy depends on r-cran-reshape2; however: Package r-cran-reshape2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-gtable; however: Package r-cran-gtable is not installed. pbuilder-satisfydepends-dummy depends on r-cran-hmisc; however: Package r-cran-hmisc is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biovizbase (>= 1.52.0); however: Package r-bioc-biovizbase is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase (>= 2.64.0); however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors (>= 0.42.1); however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-iranges (>= 2.38.1); however: Package r-bioc-iranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomeinfodb (>= 1.40.1); however: Package r-bioc-genomeinfodb is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicranges (>= 1.56.1); however: Package r-bioc-genomicranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-summarizedexperiment (>= 1.34.0); however: Package r-bioc-summarizedexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biostrings (>= 2.72.1); however: Package r-bioc-biostrings is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rsamtools (>= 2.20.0); however: Package r-bioc-rsamtools is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicalignments (>= 1.40.0); however: Package r-bioc-genomicalignments is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-bsgenome (>= 1.72.0); however: Package r-bioc-bsgenome is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-variantannotation (>= 1.50.0); however: Package r-bioc-variantannotation is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rtracklayer (>= 1.64.0); however: Package r-bioc-rtracklayer is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicfeatures (>= 1.56.0); however: Package r-bioc-genomicfeatures is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-organismdbi (>= 1.46.0); however: Package r-bioc-organismdbi is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggally; however: Package r-cran-ggally is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-ensembldb (>= 2.28.0); however: Package r-bioc-ensembldb is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-annotationdbi (>= 1.66.0); however: Package r-bioc-annotationdbi is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-annotationfilter (>= 1.28.0); however: Package r-bioc-annotationfilter is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rlang; however: Package r-cran-rlang is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} javascript-common{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-bootstrap4{a} libjs-d3{a} libjs-es5-shim{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-selectize.js{a} libjs-jquery-ui{a} libjs-json{a} libjs-mathjax{a} libjs-microplugin.js{a} libjs-modernizr{a} libjs-popper.js{a} libjs-prettify{a} libjs-sifter.js{a} libjs-twitter-bootstrap-datepicker{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnuma1{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libuv1t64{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} libyaml-0-2{a} littler{a} m4{a} man-db{a} node-bootstrap-sass{a} node-html5shiv{a} node-normalize.css{a} openssl{a} pandoc{a} pandoc-data{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-s4vectors{a} r-cran-acepack{a} r-cran-backports{a} r-cran-base64enc{a} r-cran-bslib{a} r-cran-cachem{a} r-cran-checkmate{a} r-cran-chron{a} r-cran-cli{a} r-cran-cluster{a} r-cran-colorspace{a} r-cran-commonmark{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-data.table{a} r-cran-deldir{a} r-cran-digest{a} r-cran-dplyr{a} r-cran-ellipsis{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastmap{a} r-cran-fontawesome{a} r-cran-forcats{a} r-cran-foreign{a} r-cran-formula{a} r-cran-fs{a} r-cran-generics{a} r-cran-ggally{a} r-cran-ggplot2{a} r-cran-ggstats{a} r-cran-glue{a} r-cran-gridextra{a} r-cran-gtable{a} r-cran-highr{a} r-cran-hmisc{a} r-cran-hms{a} r-cran-htmltable{a} r-cran-htmltools{a} r-cran-htmlwidgets{a} r-cran-httpuv{a} r-cran-interp{a} r-cran-isoband{a} r-cran-jpeg{a} r-cran-jquerylib{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-later{a} r-cran-lattice{a} r-cran-latticeextra{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-nnet{a} r-cran-patchwork{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plyr{a} r-cran-png{a} r-cran-prettyunits{a} r-cran-progress{a} r-cran-promises{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcppeigen{a} r-cran-reshape2{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-rpart{a} r-cran-rstudioapi{a} r-cran-sass{a} r-cran-scales{a} r-cran-shiny{a} r-cran-sourcetools{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-survival{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-tinytex{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridis{a} r-cran-viridislite{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx node-highlight.js node-jquery publicsuffix r-cran-abind r-cran-bench r-cran-bit r-cran-bit64 r-cran-brio r-cran-broom r-cran-broom.helpers r-cran-cairo r-cran-callr r-cran-codetools r-cran-covr r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-desc r-cran-devtools r-cran-dichromat r-cran-doparallel r-cran-downlit r-cran-dt r-cran-dygraphs r-cran-emmeans r-cran-fastmatch r-cran-foreach r-cran-formatr r-cran-formattable r-cran-future r-cran-geosphere r-cran-ggforce r-cran-gridgraphics r-cran-gridsvg r-cran-hexbin r-cran-httr r-cran-igraph r-cran-intergraph r-cran-iterators r-cran-itertools r-cran-kernlab r-cran-kernsmooth r-cran-labelled r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-markdown r-cran-microbenchmark r-cran-mockery r-cran-multcomp r-cran-mvtnorm r-cran-network r-cran-pkgdown r-cran-pkgload r-cran-processx r-cran-profvis r-cran-ps r-cran-pscl r-cran-quantreg r-cran-r.rsp r-cran-r.utils r-cran-ragg r-cran-readr r-cran-remotes r-cran-renv r-cran-reshape r-cran-reticulate r-cran-rgl r-cran-rmysql r-cran-roxygen2 r-cran-rpostgresql r-cran-rprojroot r-cran-rsconnect r-cran-rsqlite r-cran-rsvg r-cran-runit r-cran-shinyjs r-cran-sna r-cran-spelling r-cran-survey r-cran-svglite r-cran-testit r-cran-testthat r-cran-thematic r-cran-tidyverse r-cran-tikzdevice r-cran-tinytest r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-waldo r-cran-webshot r-cran-whoami r-cran-xml2 r-cran-xts r-cran-zeallot r-cran-zoo r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 320 newly installed, 0 to remove and 0 not upgraded. Need to get 246 MB of archives. After unpacking 838 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-biovizbase (>= 1.52.0) which is a virtual package and is not provided by any available package Depends: r-bioc-iranges (>= 2.38.1) which is a virtual package and is not provided by any available package Depends: r-bioc-genomeinfodb (>= 1.40.1) but it is not installable Depends: r-bioc-genomicranges (>= 1.56.1) which is a virtual package and is not provided by any available package Depends: r-bioc-summarizedexperiment (>= 1.34.0) but it is not installable Depends: r-bioc-biostrings (>= 2.72.1) which is a virtual package and is not provided by any available package Depends: r-bioc-rsamtools (>= 2.20.0) which is a virtual package and is not provided by any available package Depends: r-bioc-genomicalignments (>= 1.40.0) which is a virtual package and is not provided by any available package Depends: r-bioc-bsgenome (>= 1.72.0) but it is not installable Depends: r-bioc-variantannotation (>= 1.50.0) which is a virtual package and is not provided by any available package Depends: r-bioc-rtracklayer (>= 1.64.0) which is a virtual package and is not provided by any available package Depends: r-bioc-genomicfeatures (>= 1.56.0) but it is not installable Depends: r-bioc-organismdbi (>= 1.46.0) but it is not installable Depends: r-bioc-ensembldb (>= 2.28.0) but it is not installable Depends: r-bioc-annotationdbi (>= 1.66.0) but it is not installable Depends: r-bioc-annotationfilter (>= 1.28.0) but it is not installable Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} javascript-common{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-bootstrap4{a} libjs-d3{a} libjs-es5-shim{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-selectize.js{a} libjs-jquery-ui{a} libjs-json{a} libjs-mathjax{a} libjs-microplugin.js{a} libjs-modernizr{a} libjs-popper.js{a} libjs-prettify{a} libjs-sifter.js{a} libjs-twitter-bootstrap-datepicker{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnuma1{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libuv1t64{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} libyaml-0-2{a} littler{a} m4{a} man-db{a} node-bootstrap-sass{a} node-html5shiv{a} node-normalize.css{a} openssl{a} pandoc{a} pandoc-data{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-s4vectors{a} r-cran-acepack{a} r-cran-backports{a} r-cran-base64enc{a} r-cran-bslib{a} r-cran-cachem{a} r-cran-checkmate{a} r-cran-chron{a} r-cran-cli{a} r-cran-cluster{a} r-cran-colorspace{a} r-cran-commonmark{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-data.table{a} r-cran-deldir{a} r-cran-digest{a} r-cran-dplyr{a} r-cran-ellipsis{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastmap{a} r-cran-fontawesome{a} r-cran-forcats{a} r-cran-foreign{a} r-cran-formula{a} r-cran-fs{a} r-cran-generics{a} r-cran-ggally{a} r-cran-ggplot2{a} r-cran-ggstats{a} r-cran-glue{a} r-cran-gridextra{a} r-cran-gtable{a} r-cran-highr{a} r-cran-hmisc{a} r-cran-hms{a} r-cran-htmltable{a} r-cran-htmltools{a} r-cran-htmlwidgets{a} r-cran-httpuv{a} r-cran-interp{a} r-cran-isoband{a} r-cran-jpeg{a} r-cran-jquerylib{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-later{a} r-cran-lattice{a} r-cran-latticeextra{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-nnet{a} r-cran-patchwork{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plyr{a} r-cran-png{a} r-cran-prettyunits{a} r-cran-progress{a} r-cran-promises{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcppeigen{a} r-cran-reshape2{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-rpart{a} r-cran-rstudioapi{a} r-cran-sass{a} r-cran-scales{a} r-cran-shiny{a} r-cran-sourcetools{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-survival{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-tinytex{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridis{a} r-cran-viridislite{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx node-highlight.js node-jquery publicsuffix r-cran-abind r-cran-bench r-cran-bit r-cran-bit64 r-cran-brio r-cran-broom r-cran-broom.helpers r-cran-cairo r-cran-callr r-cran-codetools r-cran-covr r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-desc r-cran-devtools r-cran-dichromat r-cran-doparallel r-cran-downlit r-cran-dt r-cran-dygraphs r-cran-emmeans r-cran-fastmatch r-cran-foreach r-cran-formatr r-cran-formattable r-cran-future r-cran-geosphere r-cran-ggforce r-cran-gridgraphics r-cran-gridsvg r-cran-hexbin r-cran-httr r-cran-igraph r-cran-intergraph r-cran-iterators r-cran-itertools r-cran-kernlab r-cran-kernsmooth r-cran-labelled r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-markdown r-cran-microbenchmark r-cran-mockery r-cran-multcomp r-cran-mvtnorm r-cran-network r-cran-pkgdown r-cran-pkgload r-cran-processx r-cran-profvis r-cran-ps r-cran-pscl r-cran-quantreg r-cran-r.rsp r-cran-r.utils r-cran-ragg r-cran-readr r-cran-remotes r-cran-renv r-cran-reshape r-cran-reticulate r-cran-rgl r-cran-rmysql r-cran-roxygen2 r-cran-rpostgresql r-cran-rprojroot r-cran-rsconnect r-cran-rsqlite r-cran-rsvg r-cran-runit r-cran-shinyjs r-cran-sna r-cran-spelling r-cran-survey r-cran-svglite r-cran-testit r-cran-testthat r-cran-thematic r-cran-tidyverse r-cran-tikzdevice r-cran-tinytest r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-waldo r-cran-webshot r-cran-whoami r-cran-xml2 r-cran-xts r-cran-zeallot r-cran-zoo r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 320 newly installed, 0 to remove and 0 not upgraded. Need to get 246 MB of archives. After unpacking 838 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/55701 and its subdirectories Thu Nov 14 02:45:18 UTC 2024 W: No second build log, what happened? Thu Nov 14 02:45:18 UTC 2024 W: Downloading the build dependencies failed Thu Nov 14 02:45:18 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Thu Nov 14 02:45:18 UTC 2024 W: Network problems are automatically rescheduled after some hours.