Sat Apr 27 00:34:57 UTC 2024 I: starting to build r-bioc-genomicfeatures/trixie/i386 on jenkins on '2024-04-27 00:34' Sat Apr 27 00:34:57 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_3/23461/console.log Sat Apr 27 00:34:57 UTC 2024 I: Downloading source for trixie/r-bioc-genomicfeatures=1.54.3+dfsg-1 --2024-04-27 00:34:58-- http://deb.debian.org/debian/pool/main/r/r-bioc-genomicfeatures/r-bioc-genomicfeatures_1.54.3%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2543 (2.5K) [text/prs.lines.tag] Saving to: ‘r-bioc-genomicfeatures_1.54.3+dfsg-1.dsc’ 0K .. 100% 327M=0s 2024-04-27 00:34:58 (327 MB/s) - ‘r-bioc-genomicfeatures_1.54.3+dfsg-1.dsc’ saved [2543/2543] Sat Apr 27 00:34:58 UTC 2024 I: r-bioc-genomicfeatures_1.54.3+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-genomicfeatures Binary: r-bioc-genomicfeatures Architecture: all Version: 1.54.3+dfsg-1 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/GenomicFeatures/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-genomicfeatures Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-genomicfeatures.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-iranges, r-bioc-genomeinfodb (>= 1.35.8), r-bioc-genomicranges, r-bioc-annotationdbi, r-cran-dbi, r-cran-rsqlite, r-cran-rcurl, r-bioc-xvector, r-bioc-biostrings, r-bioc-biocio, r-bioc-rtracklayer (>= 1.51.5), r-bioc-biomart (>= 2.58.2), r-bioc-biobase, r-cran-knitr, r-cran-markdown, r-bioc-biocstyle Package-List: r-bioc-genomicfeatures deb gnu-r optional arch=all Checksums-Sha1: b6272c5290976ce236f1b0ba96df106eb20113cc 574880 r-bioc-genomicfeatures_1.54.3+dfsg.orig.tar.xz 9c5e3688b13d1e9409095c493acd574ccd678069 13044 r-bioc-genomicfeatures_1.54.3+dfsg-1.debian.tar.xz Checksums-Sha256: 7c22f120ee5862364b7e38a11a0edc10686e6d03f0b3b78aaa772b93dce13534 574880 r-bioc-genomicfeatures_1.54.3+dfsg.orig.tar.xz 70bd96520dc89467cc7529677cc5b221cb764f35adb4646ce55b375653e8cf74 13044 r-bioc-genomicfeatures_1.54.3+dfsg-1.debian.tar.xz Files: 06f7e132817ac3a47323b0e2ce33d26a 574880 r-bioc-genomicfeatures_1.54.3+dfsg.orig.tar.xz d0e00ca10f514621082353f7c0542500 13044 r-bioc-genomicfeatures_1.54.3+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmXAqz4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH+Jw/7BgMXL4+93kfJc+XxIOw3fogUkNa5SOBC mi29j8yjIMgn4mp1Ck31z3FDZB2C6AHyB7u1v0ipLut+195jKfU5GvYRNlOughyk r52aSDzmgQWlq6Bdvru1eYqg4MLfUU96Ue88ikvIxmfG6Sr0yxH/hJtlRQhiCrXK d4vv5+aHG3amZx/csjPfe6gapipVpQN6W2eoaaeMfX6OL3gscWt+jw0RtTOPrhDs 3ONoyxW7lmikuS0dAQLEBtt1mBxsdO0DDGErMd+UpnoY+bbnH+2G/hJUvMr+dZkz cQXeAo15SeJqQKmLmn2GwGksaD8rJRD2AI0wvYB+mEArBAYXQTlQhnd8vFL4M2hf TSJbW+DrlP5q54H8X3aE7GoDm2wzjp7txXhJcNb4MHtyKvN5gliSOfb5+6aSV1dA rJzq8i+wZPgyg5i6Z/l/xtuxz1RhP9ctqNYQsqZQyb6PDFopQwP6gMkxvTLxvP9I k/ZrbQhaLZVn3i/Xmi/uRM/kvqtT3stM6d9cDZYXba3QLhAHx99wOHFCuXuRRSbC 2dKz3Kjp3KVKEiZtJZj2qw+789Toa1CgBs3h5sEi9/D3UIHojYAnl1ERTbyocFWF c5XnVR16HP2SWUo2BhpiXkX687bt+Lcy0U9qdv323+ePvb9vqXi0s/NlSGuUmmvU rrSFDAyAtn4= =xD+u -----END PGP SIGNATURE----- Sat Apr 27 00:34:58 UTC 2024 I: Checking whether the package is not for us Sat Apr 27 00:34:58 UTC 2024 I: Starting 1st build on remote node ionos2-i386.debian.net. Sat Apr 27 00:34:58 UTC 2024 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Sat Apr 27 00:35:23 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Apr 26 12:34:59 -12 2024 I: pbuilder-time-stamp: 1714178099 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-bioc-genomicfeatures_1.54.3+dfsg-1.dsc] I: copying [./r-bioc-genomicfeatures_1.54.3+dfsg.orig.tar.xz] I: copying [./r-bioc-genomicfeatures_1.54.3+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Feb 5 09:32:46 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicfeatures_1.54.3+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-genomicfeatures in r-bioc-genomicfeatures-1.54.3+dfsg dpkg-source: info: unpacking r-bioc-genomicfeatures_1.54.3+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-genomicfeatures_1.54.3+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Fix_autopkgtest.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/6269/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='60aee06331fb483b90a413cdfa544036' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='6269' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fzoC5Dft/pbuilderrc_dvru --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fzoC5Dft/b1 --logfile b1/build.log r-bioc-genomicfeatures_1.54.3+dfsg-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos2-i386 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 21 07:13 /bin -> usr/bin I: user script /srv/workspace/pbuilder/6269/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-iranges, r-bioc-genomeinfodb (>= 1.35.8), r-bioc-genomicranges, r-bioc-annotationdbi, r-cran-dbi, r-cran-rsqlite, r-cran-rcurl, r-bioc-xvector, r-bioc-biostrings, r-bioc-biocio, r-bioc-rtracklayer (>= 1.51.5), r-bioc-biomart (>= 2.58.2), r-bioc-biobase, r-cran-knitr, r-cran-markdown, r-bioc-biocstyle dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19881 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics; however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors; however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-iranges; however: Package r-bioc-iranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomeinfodb (>= 1.35.8); however: Package r-bioc-genomeinfodb is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicranges; however: Package r-bioc-genomicranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-annotationdbi; however: Package r-bioc-annotationdbi is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dbi; however: Package r-cran-dbi is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rsqlite; however: Package r-cran-rsqlite is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcurl; however: Package r-cran-rcurl is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-xvector; however: Package r-bioc-xvector is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biostrings; however: Package r-bioc-biostrings is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocio; however: Package r-bioc-biocio is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rtracklayer (>= 1.51.5); however: Package r-bioc-rtracklayer is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biomart (>= 2.58.2); however: Package r-bioc-biomart is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase; however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-cran-knitr; however: Package r-cran-knitr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-markdown; however: Package r-cran-markdown is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocstyle; however: Package r-bioc-biocstyle is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 19.3 MB of archives. After unpacking 73.7 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: dh-r but it is not installable Depends: r-base-dev but it is not installable Depends: r-bioc-biocgenerics but it is not installable Depends: r-bioc-s4vectors but it is not installable Depends: r-bioc-iranges but it is not installable Depends: r-bioc-genomeinfodb (>= 1.35.8) but it is not installable Depends: r-bioc-genomicranges but it is not installable Depends: r-bioc-annotationdbi but it is not installable Depends: r-cran-dbi but it is not installable Depends: r-cran-rsqlite but it is not installable Depends: r-cran-rcurl but it is not installable Depends: r-bioc-xvector but it is not installable Depends: r-bioc-biostrings but it is not installable Depends: r-bioc-biocio but it is not installable Depends: r-bioc-rtracklayer (>= 1.51.5) which is a virtual package and is not provided by any available package Depends: r-bioc-biomart (>= 2.58.2) but it is not installable Depends: r-bioc-biobase but it is not installable Depends: r-cran-knitr but it is not installable Depends: r-cran-markdown but it is not installable Depends: r-bioc-biocstyle but it is not installable Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 19.3 MB of archives. After unpacking 73.7 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/6269 and its subdirectories Sat Apr 27 00:35:25 UTC 2024 W: No second build log, what happened? Sat Apr 27 00:35:25 UTC 2024 W: Downloading the build dependencies failed Sat Apr 27 00:35:25 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Sat Apr 27 00:35:25 UTC 2024 W: Network problems are automatically rescheduled after some hours.